augustus →
3.2.2+dfsg-2 →
armhf → 2016-10-01 10:58:50
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on bm-wb-04
+==============================================================================+
| augustus 3.2.2+dfsg-2 (armhf) 01 Oct 2016 10:28 |
+==============================================================================+
Package: augustus
Version: 3.2.2+dfsg-2
Source Version: 3.2.2+dfsg-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/augustus-KAf4H9/augustus-3.2.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/augustus-KAf4H9' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-0e6abed7-b7fe-4f43-bdd9-b3279e352a09' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9319 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.3 MB]
Fetched 20.6 MB in 22s (929 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'augustus' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/augustus.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/augustus.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 44.9 MB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main augustus 3.2.2+dfsg-2 (dsc) [2241 B]
Get:2 http://172.17.0.1/private stretch-staging/main augustus 3.2.2+dfsg-2 (tar) [44.9 MB]
Get:3 http://172.17.0.1/private stretch-staging/main augustus 3.2.2+dfsg-2 (diff) [18.2 kB]
Fetched 44.9 MB in 4s (10.7 MB/s)
Download complete and in download only mode
Check architectures
-------------------
Check dependencies
------------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-T8L79_/apt_archive/sbuild-build-depends-core-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-T8L79_/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-T8L79_/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-T8L79_/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-T8L79_/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-T8L79_/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-T8L79_/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-T8L79_/apt_archive ./ Sources [214 B]
Get:5 file:/<<BUILDDIR>>/resolver-T8L79_/apt_archive ./ Packages [527 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-T8L79_/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 27 not upgraded.
Need to get 0 B/760 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-T8L79_/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [760 B]
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 13807 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
Merged Build-Depends: debhelper (>= 9), libsqlite3-dev, libboost-iostreams-dev, zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbam-dev, libhts-dev, libncurses5-dev, asciidoctor
Filtered Build-Depends: debhelper (>= 9), libsqlite3-dev, libboost-iostreams-dev, zlib1g-dev, libgsl-dev, liblpsolve55-dev, libbamtools-dev, libbam-dev, libhts-dev, libncurses5-dev, asciidoctor
dpkg-deb: building package 'sbuild-build-depends-augustus-dummy' in '/<<BUILDDIR>>/resolver-Z4FatB/apt_archive/sbuild-build-depends-augustus-dummy.deb'.
Warning: apt-key output should not be parsed (stdout is not a terminal)
OK
Get:1 file:/<<BUILDDIR>>/resolver-Z4FatB/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-Z4FatB/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-Z4FatB/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-Z4FatB/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-Z4FatB/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-Z4FatB/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-Z4FatB/apt_archive ./ Sources [277 B]
Get:5 file:/<<BUILDDIR>>/resolver-Z4FatB/apt_archive ./ Packages [596 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-Z4FatB/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install augustus build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils
ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian
libamd2 libarchive-zip-perl libbam-dev libbamtools-dev libbamtools2.4.0
libblas-common libblas-dev libblas3 libboost-iostreams-dev
libboost-iostreams1.61-dev libboost-iostreams1.61.0 libboost-regex1.61-dev
libboost-regex1.61.0 libboost1.61-dev libbsd0 libbtf1 libcamd2 libccolamd2
libcholmod3 libcolamd2 libcroco3 libcurl3-gnutls libcxsparse3 libffi6
libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0
libgnutls30 libgsl-dev libgsl2 libgssapi-krb5-2 libhogweed4 libhts-dev
libhts1 libicu-dev libicu57 libk5crypto3 libkeyutils1 libklu1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldl2
liblpsolve55-dev libmagic-mgc libmagic1 libmetis5 libncurses5
libncurses5-dev libncursesw5 libnettle6 libnghttp2-14 libp11-kit0
libpipeline1 librbio2 librtmp1 libruby2.3 libsasl2-2 libsasl2-modules-db
libsigsegv2 libspqr2 libsqlite3-0 libsqlite3-dev libssh2-1 libssl1.0.2
libsuitesparse-dev libsuitesparseconfig4 libtasn1-6 libtinfo-dev libtinfo5
libtool libumfpack5 libunistring0 libxml2 libyaml-0-2 m4 man-db openssl
po-debconf rake ruby ruby-did-you-mean ruby-minitest ruby-net-telnet
ruby-power-assert ruby-test-unit ruby2.3 rubygems-integration zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc
gfortran-6-doc libgfortran3-dbg libcoarrays-dev groff libbamtools-doc
liblapack-doc-man liblapack-doc libboost1.61-doc libboost-atomic1.61-dev
libboost-chrono1.61-dev libboost-context1.61-dev libboost-coroutine1.61-dev
libboost-date-time1.61-dev libboost-exception1.61-dev
libboost-filesystem1.61-dev libboost-graph1.61-dev
libboost-graph-parallel1.61-dev libboost-locale1.61-dev libboost-log1.61-dev
libboost-math1.61-dev libboost-mpi1.61-dev libboost-mpi-python1.61-dev
libboost-program-options1.61-dev libboost-python1.61-dev
libboost-random1.61-dev libboost-serialization1.61-dev
libboost-signals1.61-dev libboost-system1.61-dev libboost-test1.61-dev
libboost-thread1.61-dev libboost-timer1.61-dev libboost-wave1.61-dev
libboost1.61-tools-dev libmpfrc++-dev libntl-dev gnutls-bin gsl-ref-psdoc
| gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user icu-doc
ncurses-doc sqlite3-doc libtool-doc gcj-jdk less www-browser
libmail-box-perl ri ruby-dev bundler
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
krb5-locales libgpm2 libsasl2-modules libltdl-dev xml-core
libmail-sendmail-perl zip fonts-lato libjs-jquery
The following NEW packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bsdmainutils
ca-certificates debhelper dh-autoreconf dh-strip-nondeterminism file gettext
gettext-base gfortran gfortran-6 groff-base icu-devtools intltool-debian
libamd2 libarchive-zip-perl libbam-dev libbamtools-dev libbamtools2.4.0
libblas-common libblas-dev libblas3 libboost-iostreams-dev
libboost-iostreams1.61-dev libboost-iostreams1.61.0 libboost-regex1.61-dev
libboost-regex1.61.0 libboost1.61-dev libbsd0 libbtf1 libcamd2 libccolamd2
libcholmod3 libcolamd2 libcroco3 libcurl3-gnutls libcxsparse3 libffi6
libfile-stripnondeterminism-perl libgfortran-6-dev libgfortran3 libglib2.0-0
libgnutls30 libgsl-dev libgsl2 libgssapi-krb5-2 libhogweed4 libhts-dev
libhts1 libicu-dev libicu57 libk5crypto3 libkeyutils1 libklu1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 libldl2
liblpsolve55-dev libmagic-mgc libmagic1 libmetis5 libncurses5-dev libnettle6
libnghttp2-14 libp11-kit0 libpipeline1 librbio2 librtmp1 libruby2.3
libsasl2-2 libsasl2-modules-db libsigsegv2 libspqr2 libsqlite3-0
libsqlite3-dev libssh2-1 libssl1.0.2 libsuitesparse-dev
libsuitesparseconfig4 libtasn1-6 libtinfo-dev libtool libumfpack5
libunistring0 libxml2 libyaml-0-2 m4 man-db openssl po-debconf rake ruby
ruby-did-you-mean ruby-minitest ruby-net-telnet ruby-power-assert
ruby-test-unit ruby2.3 rubygems-integration
sbuild-build-depends-augustus-dummy zlib1g-dev
The following packages will be upgraded:
libncurses5 libncursesw5 libtinfo5
3 upgraded, 108 newly installed, 0 to remove and 24 not upgraded.
Need to get 87.7 MB/87.7 MB of archives.
After this operation, 434 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-Z4FatB/apt_archive ./ sbuild-build-depends-augustus-dummy 0.invalid.0 [836 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf libncurses5 armhf 6.0+20160917-1 [74.0 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libtinfo5 armhf 6.0+20160917-1 [287 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf libncursesw5 armhf 6.0+20160917-1 [92.7 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams1.61.0 armhf 1.61.0+dfsg-2.1 [48.8 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf libssl1.0.2 armhf 1.0.2j-1 [890 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.28-4 [210 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-4 [104 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-4 [62.7 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libnettle6 armhf 3.2-1 [202 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libhogweed4 armhf 3.2-1 [126 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libffi6 armhf 3.2.1-6 [18.7 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libp11-kit0 armhf 0.23.2-5 [93.9 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libtasn1-6 armhf 4.9-4 [44.9 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.5.4-2 [740 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.14.3+dfsg-2 [57.5 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.14.3+dfsg-2 [110 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.14.3+dfsg-2 [262 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.14.3+dfsg-2 [131 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.26.dfsg1-15 [65.6 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.26.dfsg1-15 [96.7 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.42+dfsg-2+rpi1+b2 [198 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-0 armhf 3.14.2-1 [482 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-4 [7407 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2 [805 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf openssl armhf 1.0.2j-1 [671 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf ca-certificates all 20160104 [200 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf rubygems-integration all 1.10 [4882 B]
Get:38 http://172.17.0.1/private stretch-staging/main armhf rake all 10.5.0-2 [49.4 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf ruby-did-you-mean all 1.0.0-2 [11.2 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf ruby-minitest all 5.9.0-1 [51.1 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf ruby-power-assert all 0.3.0-1 [7902 B]
Get:43 http://172.17.0.1/private stretch-staging/main armhf ruby-test-unit all 3.1.7-2 [69.6 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libyaml-0-2 armhf 0.1.7-1 [39.4 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf libruby2.3 armhf 2.3.1-5 [2847 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf ruby2.3 armhf 2.3.1-5 [178 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf ruby armhf 1:2.3.0+4 [10.6 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf asciidoctor all 1.5.4-2 [163 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.0-1 [2520 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10 [823 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.1.1-11+rpi1 [166 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libgfortran-6-dev armhf 6.1.1-11+rpi1 [200 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf gfortran-6 armhf 6.1.1-11+rpi1 [27.9 MB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:6.1.1-1 [1370 B]
Get:69 http://172.17.0.1/private stretch-staging/main armhf icu-devtools armhf 57.1-4 [156 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libsuitesparseconfig4 armhf 1:4.5.3-1 [18.4 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libamd2 armhf 1:4.5.3-1 [30.0 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libbam-dev armhf 0.1.19-2 [109 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.1-2 [13.9 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.1-2 [112 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.1-2 [18.9 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libboost1.61-dev armhf 1.61.0+dfsg-2.1 [6851 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.61.0 armhf 1.61.0+dfsg-2.1 [232 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libicu-dev armhf 57.1-4 [15.7 MB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libboost-regex1.61-dev armhf 1.61.0+dfsg-2.1 [324 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams1.61-dev armhf 1.61.0+dfsg-2.1 [58.2 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libboost-iostreams-dev armhf 1.61.0.2 [3392 B]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libbtf1 armhf 1:4.5.3-1 [18.8 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libcamd2 armhf 1:4.5.3-1 [25.3 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libccolamd2 armhf 1:4.5.3-1 [26.2 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libcolamd2 armhf 1:4.5.3-1 [23.2 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.1-2 [1392 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libmetis5 armhf 5.1.0.dfsg-5 [131 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libcholmod3 armhf 1:4.5.3-1 [201 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.14.1-1 [67.7 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.7.0-1 [125 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libcurl3-gnutls armhf 7.50.1-1 [248 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libcxsparse3 armhf 1:4.5.3-1 [46.6 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libgsl2 armhf 2.2.1+dfsg-1 [717 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libgsl-dev armhf 2.2.1+dfsg-1 [843 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf libhts1 armhf 1.3.1-3+rpi1 [216 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf libhts-dev armhf 1.3.1-3+rpi1 [270 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libklu1 armhf 1:4.5.3-1 [47.7 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.1-2 [1379 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libldl2 armhf 1:4.5.3-1 [18.6 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf libumfpack5 armhf 1:4.5.3-1 [125 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf librbio2 armhf 1:4.5.3-1 [27.2 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf libspqr2 armhf 1:4.5.3-1 [62.3 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf libsuitesparse-dev armhf 1:4.5.3-1 [550 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf liblpsolve55-dev armhf 5.5.0.15-4 [350 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf libtinfo-dev armhf 6.0+20160917-1 [65.4 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf libncurses5-dev armhf 6.0+20160917-1 [245 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf libsqlite3-dev armhf 3.14.2-1 [626 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf libbamtools2.4.0 armhf 2.4.0+dfsg-6 [159 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf libbamtools-dev armhf 2.4.0+dfsg-6 [212 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 87.7 MB in 8s (9869 kB/s)
Selecting previously unselected package groff-base.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 13807 files and directories currently installed.)
Preparing to unpack .../0-groff-base_1.22.3-8_armhf.deb ...
Unpacking groff-base (1.22.3-8) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../1-libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Preparing to unpack .../2-libncurses5_6.0+20160917-1_armhf.deb ...
Unpacking libncurses5:armhf (6.0+20160917-1) over (6.0+20160625-1) ...
Preparing to unpack .../3-libtinfo5_6.0+20160917-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.0+20160917-1) over (6.0+20160625-1) ...
Setting up libtinfo5:armhf (6.0+20160917-1) ...
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 13998 files and directories currently installed.)
Preparing to unpack .../libncursesw5_6.0+20160917-1_armhf.deb ...
Unpacking libncursesw5:armhf (6.0+20160917-1) over (6.0+20160625-1) ...
Setting up libncursesw5:armhf (6.0+20160917-1) ...
Selecting previously unselected package bsdmainutils.
(Reading database ...
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 13998 files and directories currently installed.)
Preparing to unpack .../000-bsdmainutils_9.0.10_armhf.deb ...
Unpacking bsdmainutils (9.0.10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../001-libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../002-man-db_2.7.5-1_armhf.deb ...
Unpacking man-db (2.7.5-1) ...
Selecting previously unselected package libboost-iostreams1.61.0:armhf.
Preparing to unpack .../003-libboost-iostreams1.61.0_1.61.0+dfsg-2.1_armhf.deb ...
Unpacking libboost-iostreams1.61.0:armhf (1.61.0+dfsg-2.1) ...
Selecting previously unselected package libssl1.0.2:armhf.
Preparing to unpack .../004-libssl1.0.2_1.0.2j-1_armhf.deb ...
Unpacking libssl1.0.2:armhf (1.0.2j-1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../005-libmagic-mgc_1%3a5.28-4_armhf.deb ...
Unpacking libmagic-mgc (1:5.28-4) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../006-libmagic1_1%3a5.28-4_armhf.deb ...
Unpacking libmagic1:armhf (1:5.28-4) ...
Selecting previously unselected package file.
Preparing to unpack .../007-file_1%3a5.28-4_armhf.deb ...
Unpacking file (1:5.28-4) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../008-gettext-base_0.19.8.1-1_armhf.deb ...
Unpacking gettext-base (0.19.8.1-1) ...
Selecting previously unselected package libnettle6:armhf.
Preparing to unpack .../009-libnettle6_3.2-1_armhf.deb ...
Unpacking libnettle6:armhf (3.2-1) ...
Selecting previously unselected package libhogweed4:armhf.
Preparing to unpack .../010-libhogweed4_3.2-1_armhf.deb ...
Unpacking libhogweed4:armhf (3.2-1) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../011-libffi6_3.2.1-6_armhf.deb ...
Unpacking libffi6:armhf (3.2.1-6) ...
Selecting previously unselected package libp11-kit0:armhf.
Preparing to unpack .../012-libp11-kit0_0.23.2-5_armhf.deb ...
Unpacking libp11-kit0:armhf (0.23.2-5) ...
Selecting previously unselected package libtasn1-6:armhf.
Preparing to unpack .../013-libtasn1-6_4.9-4_armhf.deb ...
Unpacking libtasn1-6:armhf (4.9-4) ...
Selecting previously unselected package libgnutls30:armhf.
Preparing to unpack .../014-libgnutls30_3.5.4-2_armhf.deb ...
Unpacking libgnutls30:armhf (3.5.4-2) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../015-libkeyutils1_1.5.9-9_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-9) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../016-libkrb5support0_1.14.3+dfsg-2_armhf.deb ...
Unpacking libkrb5support0:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../017-libk5crypto3_1.14.3+dfsg-2_armhf.deb ...
Unpacking libk5crypto3:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../018-libkrb5-3_1.14.3+dfsg-2_armhf.deb ...
Unpacking libkrb5-3:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../019-libgssapi-krb5-2_1.14.3+dfsg-2_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libsasl2-modules-db:armhf.
Preparing to unpack .../020-libsasl2-modules-db_2.1.26.dfsg1-15_armhf.deb ...
Unpacking libsasl2-modules-db:armhf (2.1.26.dfsg1-15) ...
Selecting previously unselected package libsasl2-2:armhf.
Preparing to unpack .../021-libsasl2-2_2.1.26.dfsg1-15_armhf.deb ...
Unpacking libsasl2-2:armhf (2.1.26.dfsg1-15) ...
Selecting previously unselected package libldap-2.4-2:armhf.
Preparing to unpack .../022-libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2_armhf.deb ...
Unpacking libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Selecting previously unselected package libsqlite3-0:armhf.
Preparing to unpack .../023-libsqlite3-0_3.14.2-1_armhf.deb ...
Unpacking libsqlite3-0:armhf (3.14.2-1) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../024-libicu57_57.1-4_armhf.deb ...
Unpacking libicu57:armhf (57.1-4) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../025-libxml2_2.9.4+dfsg1-2_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-2) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../026-libsigsegv2_2.10-5_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-5) ...
Selecting previously unselected package m4.
Preparing to unpack .../027-m4_1.4.17-5_armhf.deb ...
Unpacking m4 (1.4.17-5) ...
Selecting previously unselected package openssl.
Preparing to unpack .../028-openssl_1.0.2j-1_armhf.deb ...
Unpacking openssl (1.0.2j-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../029-ca-certificates_20160104_all.deb ...
Unpacking ca-certificates (20160104) ...
Selecting previously unselected package rubygems-integration.
Preparing to unpack .../030-rubygems-integration_1.10_all.deb ...
Unpacking rubygems-integration (1.10) ...
Selecting previously unselected package rake.
Preparing to unpack .../031-rake_10.5.0-2_all.deb ...
Unpacking rake (10.5.0-2) ...
Selecting previously unselected package ruby-did-you-mean.
Preparing to unpack .../032-ruby-did-you-mean_1.0.0-2_all.deb ...
Unpacking ruby-did-you-mean (1.0.0-2) ...
Selecting previously unselected package ruby-minitest.
Preparing to unpack .../033-ruby-minitest_5.9.0-1_all.deb ...
Unpacking ruby-minitest (5.9.0-1) ...
Selecting previously unselected package ruby-net-telnet.
Preparing to unpack .../034-ruby-net-telnet_0.1.1-2_all.deb ...
Unpacking ruby-net-telnet (0.1.1-2) ...
Selecting previously unselected package ruby-power-assert.
Preparing to unpack .../035-ruby-power-assert_0.3.0-1_all.deb ...
Unpacking ruby-power-assert (0.3.0-1) ...
Selecting previously unselected package ruby-test-unit.
Preparing to unpack .../036-ruby-test-unit_3.1.7-2_all.deb ...
Unpacking ruby-test-unit (3.1.7-2) ...
Selecting previously unselected package libyaml-0-2:armhf.
Preparing to unpack .../037-libyaml-0-2_0.1.7-1_armhf.deb ...
Unpacking libyaml-0-2:armhf (0.1.7-1) ...
Selecting previously unselected package libruby2.3:armhf.
Preparing to unpack .../038-libruby2.3_2.3.1-5_armhf.deb ...
Unpacking libruby2.3:armhf (2.3.1-5) ...
Selecting previously unselected package ruby2.3.
Preparing to unpack .../039-ruby2.3_2.3.1-5_armhf.deb ...
Unpacking ruby2.3 (2.3.1-5) ...
Selecting previously unselected package ruby.
Preparing to unpack .../040-ruby_1%3a2.3.0+4_armhf.deb ...
Unpacking ruby (1:2.3.0+4) ...
Selecting previously unselected package asciidoctor.
Preparing to unpack .../041-asciidoctor_1.5.4-2_all.deb ...
Unpacking asciidoctor (1.5.4-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../042-autoconf_2.69-10_all.deb ...
Unpacking autoconf (2.69-10) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../043-autotools-dev_20160430.1_all.deb ...
Unpacking autotools-dev (20160430.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../044-automake_1%3a1.15-4_all.deb ...
Unpacking automake (1:1.15-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../045-autopoint_0.19.8.1-1_all.deb ...
Unpacking autopoint (0.19.8.1-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../046-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../047-dh-autoreconf_12_all.deb ...
Unpacking dh-autoreconf (12) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../048-libarchive-zip-perl_1.59-1_all.deb ...
Unpacking libarchive-zip-perl (1.59-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../049-libfile-stripnondeterminism-perl_0.028-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.028-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../050-dh-strip-nondeterminism_0.028-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.028-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../051-libglib2.0-0_2.50.0-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.50.0-1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../052-libcroco3_0.6.11-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-2) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../053-libunistring0_0.9.6+really0.9.3-0.1_armhf.deb ...
Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../054-gettext_0.19.8.1-1_armhf.deb ...
Unpacking gettext (0.19.8.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../055-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../056-po-debconf_1.0.19_all.deb ...
Unpacking po-debconf (1.0.19) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../057-debhelper_10_all.deb ...
Unpacking debhelper (10) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../058-libgfortran3_6.1.1-11+rpi1_armhf.deb ...
Unpacking libgfortran3:armhf (6.1.1-11+rpi1) ...
Selecting previously unselected package libgfortran-6-dev:armhf.
Preparing to unpack .../059-libgfortran-6-dev_6.1.1-11+rpi1_armhf.deb ...
Unpacking libgfortran-6-dev:armhf (6.1.1-11+rpi1) ...
Selecting previously unselected package gfortran-6.
Preparing to unpack .../060-gfortran-6_6.1.1-11+rpi1_armhf.deb ...
Unpacking gfortran-6 (6.1.1-11+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../061-gfortran_4%3a6.1.1-1_armhf.deb ...
Unpacking gfortran (4:6.1.1-1) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../062-icu-devtools_57.1-4_armhf.deb ...
Unpacking icu-devtools (57.1-4) ...
Selecting previously unselected package libsuitesparseconfig4:armhf.
Preparing to unpack .../063-libsuitesparseconfig4_1%3a4.5.3-1_armhf.deb ...
Unpacking libsuitesparseconfig4:armhf (1:4.5.3-1) ...
Selecting previously unselected package libamd2:armhf.
Preparing to unpack .../064-libamd2_1%3a4.5.3-1_armhf.deb ...
Unpacking libamd2:armhf (1:4.5.3-1) ...
Selecting previously unselected package libbam-dev.
Preparing to unpack .../065-libbam-dev_0.1.19-2_armhf.deb ...
Unpacking libbam-dev (0.1.19-2) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../066-libblas-common_3.6.1-2_armhf.deb ...
Unpacking libblas-common (3.6.1-2) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../067-libblas3_3.6.1-2_armhf.deb ...
Unpacking libblas3 (3.6.1-2) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../068-libblas-dev_3.6.1-2_armhf.deb ...
Unpacking libblas-dev (3.6.1-2) ...
Selecting previously unselected package libboost1.61-dev:armhf.
Preparing to unpack .../069-libboost1.61-dev_1.61.0+dfsg-2.1_armhf.deb ...
Unpacking libboost1.61-dev:armhf (1.61.0+dfsg-2.1) ...
Selecting previously unselected package libboost-regex1.61.0:armhf.
Preparing to unpack .../070-libboost-regex1.61.0_1.61.0+dfsg-2.1_armhf.deb ...
Unpacking libboost-regex1.61.0:armhf (1.61.0+dfsg-2.1) ...
Selecting previously unselected package libicu-dev.
Preparing to unpack .../071-libicu-dev_57.1-4_armhf.deb ...
Unpacking libicu-dev (57.1-4) ...
Selecting previously unselected package libboost-regex1.61-dev:armhf.
Preparing to unpack .../072-libboost-regex1.61-dev_1.61.0+dfsg-2.1_armhf.deb ...
Unpacking libboost-regex1.61-dev:armhf (1.61.0+dfsg-2.1) ...
Selecting previously unselected package libboost-iostreams1.61-dev:armhf.
Preparing to unpack .../073-libboost-iostreams1.61-dev_1.61.0+dfsg-2.1_armhf.deb ...
Unpacking libboost-iostreams1.61-dev:armhf (1.61.0+dfsg-2.1) ...
Selecting previously unselected package libboost-iostreams-dev:armhf.
Preparing to unpack .../074-libboost-iostreams-dev_1.61.0.2_armhf.deb ...
Unpacking libboost-iostreams-dev:armhf (1.61.0.2) ...
Selecting previously unselected package libbtf1:armhf.
Preparing to unpack .../075-libbtf1_1%3a4.5.3-1_armhf.deb ...
Unpacking libbtf1:armhf (1:4.5.3-1) ...
Selecting previously unselected package libcamd2:armhf.
Preparing to unpack .../076-libcamd2_1%3a4.5.3-1_armhf.deb ...
Unpacking libcamd2:armhf (1:4.5.3-1) ...
Selecting previously unselected package libccolamd2:armhf.
Preparing to unpack .../077-libccolamd2_1%3a4.5.3-1_armhf.deb ...
Unpacking libccolamd2:armhf (1:4.5.3-1) ...
Selecting previously unselected package libcolamd2:armhf.
Preparing to unpack .../078-libcolamd2_1%3a4.5.3-1_armhf.deb ...
Unpacking libcolamd2:armhf (1:4.5.3-1) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../079-liblapack3_3.6.1-2_armhf.deb ...
Unpacking liblapack3 (3.6.1-2) ...
Selecting previously unselected package libmetis5:armhf.
Preparing to unpack .../080-libmetis5_5.1.0.dfsg-5_armhf.deb ...
Unpacking libmetis5:armhf (5.1.0.dfsg-5) ...
Selecting previously unselected package libcholmod3:armhf.
Preparing to unpack .../081-libcholmod3_1%3a4.5.3-1_armhf.deb ...
Unpacking libcholmod3:armhf (1:4.5.3-1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../082-libnghttp2-14_1.14.1-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.14.1-1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../083-librtmp1_2.4+20151223.gitfa8646d.1-1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../084-libssh2-1_1.7.0-1_armhf.deb ...
Unpacking libssh2-1:armhf (1.7.0-1) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../085-libcurl3-gnutls_7.50.1-1_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.50.1-1) ...
Selecting previously unselected package libcxsparse3:armhf.
Preparing to unpack .../086-libcxsparse3_1%3a4.5.3-1_armhf.deb ...
Unpacking libcxsparse3:armhf (1:4.5.3-1) ...
Selecting previously unselected package libgsl2:armhf.
Preparing to unpack .../087-libgsl2_2.2.1+dfsg-1_armhf.deb ...
Unpacking libgsl2:armhf (2.2.1+dfsg-1) ...
Selecting previously unselected package libgsl-dev.
Preparing to unpack .../088-libgsl-dev_2.2.1+dfsg-1_armhf.deb ...
Unpacking libgsl-dev (2.2.1+dfsg-1) ...
Selecting previously unselected package libhts1:armhf.
Preparing to unpack .../089-libhts1_1.3.1-3+rpi1_armhf.deb ...
Unpacking libhts1:armhf (1.3.1-3+rpi1) ...
Selecting previously unselected package libhts-dev:armhf.
Preparing to unpack .../090-libhts-dev_1.3.1-3+rpi1_armhf.deb ...
Unpacking libhts-dev:armhf (1.3.1-3+rpi1) ...
Selecting previously unselected package libklu1:armhf.
Preparing to unpack .../091-libklu1_1%3a4.5.3-1_armhf.deb ...
Unpacking libklu1:armhf (1:4.5.3-1) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../092-liblapack-dev_3.6.1-2_armhf.deb ...
Unpacking liblapack-dev (3.6.1-2) ...
Selecting previously unselected package libldl2:armhf.
Preparing to unpack .../093-libldl2_1%3a4.5.3-1_armhf.deb ...
Unpacking libldl2:armhf (1:4.5.3-1) ...
Selecting previously unselected package libumfpack5:armhf.
Preparing to unpack .../094-libumfpack5_1%3a4.5.3-1_armhf.deb ...
Unpacking libumfpack5:armhf (1:4.5.3-1) ...
Selecting previously unselected package librbio2:armhf.
Preparing to unpack .../095-librbio2_1%3a4.5.3-1_armhf.deb ...
Unpacking librbio2:armhf (1:4.5.3-1) ...
Selecting previously unselected package libspqr2:armhf.
Preparing to unpack .../096-libspqr2_1%3a4.5.3-1_armhf.deb ...
Unpacking libspqr2:armhf (1:4.5.3-1) ...
Selecting previously unselected package libsuitesparse-dev:armhf.
Preparing to unpack .../097-libsuitesparse-dev_1%3a4.5.3-1_armhf.deb ...
Unpacking libsuitesparse-dev:armhf (1:4.5.3-1) ...
Selecting previously unselected package liblpsolve55-dev.
Preparing to unpack .../098-liblpsolve55-dev_5.5.0.15-4_armhf.deb ...
Unpacking liblpsolve55-dev (5.5.0.15-4) ...
Selecting previously unselected package libtinfo-dev:armhf.
Preparing to unpack .../099-libtinfo-dev_6.0+20160917-1_armhf.deb ...
Unpacking libtinfo-dev:armhf (6.0+20160917-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
Preparing to unpack .../100-libncurses5-dev_6.0+20160917-1_armhf.deb ...
Unpacking libncurses5-dev:armhf (6.0+20160917-1) ...
Selecting previously unselected package libsqlite3-dev:armhf.
Preparing to unpack .../101-libsqlite3-dev_3.14.2-1_armhf.deb ...
Unpacking libsqlite3-dev:armhf (3.14.2-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../102-zlib1g-dev_1%3a1.2.8.dfsg-2+b1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Selecting previously unselected package libbamtools2.4.0.
Preparing to unpack .../103-libbamtools2.4.0_2.4.0+dfsg-6_armhf.deb ...
Unpacking libbamtools2.4.0 (2.4.0+dfsg-6) ...
Selecting previously unselected package libbamtools-dev.
Preparing to unpack .../104-libbamtools-dev_2.4.0+dfsg-6_armhf.deb ...
Unpacking libbamtools-dev (2.4.0+dfsg-6) ...
Selecting previously unselected package sbuild-build-depends-augustus-dummy.
Preparing to unpack .../105-sbuild-build-depends-augustus-dummy.deb ...
Unpacking sbuild-build-depends-augustus-dummy (0.invalid.0) ...
Setting up libncurses5:armhf (6.0+20160917-1) ...
Setting up libnettle6:armhf (3.2-1) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libnghttp2-14:armhf (1.14.1-1) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up libbamtools2.4.0 (2.4.0+dfsg-6) ...
Setting up libblas-common (3.6.1-2) ...
Setting up libgfortran3:armhf (6.1.1-11+rpi1) ...
Setting up groff-base (1.22.3-8) ...
Setting up libboost-iostreams1.61.0:armhf (1.61.0+dfsg-2.1) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-15) ...
Setting up libgfortran-6-dev:armhf (6.1.1-11+rpi1) ...
Setting up libsasl2-2:armhf (2.1.26.dfsg1-15) ...
Setting up libtinfo-dev:armhf (6.0+20160917-1) ...
Setting up libsuitesparseconfig4:armhf (1:4.5.3-1) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up libgsl2:armhf (2.2.1+dfsg-1) ...
Setting up m4 (1.4.17-5) ...
Setting up libicu57:armhf (57.1-4) ...
Setting up libboost1.61-dev:armhf (1.61.0+dfsg-2.1) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2) ...
Setting up libtasn1-6:armhf (4.9-4) ...
Setting up libmagic-mgc (1:5.28-4) ...
Setting up libmagic1:armhf (1:5.28-4) ...
Setting up libhogweed4:armhf (3.2-1) ...
Setting up libncurses5-dev:armhf (6.0+20160917-1) ...
Setting up libssl1.0.2:armhf (1.0.2j-1) ...
Setting up libamd2:armhf (1:4.5.3-1) ...
Setting up ruby-did-you-mean (1.0.0-2) ...
Setting up libyaml-0-2:armhf (0.1.7-1) ...
Setting up libblas3 (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libssh2-1:armhf (1.7.0-1) ...
Processing triggers for libc-bin (2.23-4) ...
Setting up autotools-dev (20160430.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libmetis5:armhf (5.1.0.dfsg-5) ...
Setting up openssl (1.0.2j-1) ...
Setting up ruby-net-telnet (0.1.1-2) ...
Setting up libbam-dev (0.1.19-2) ...
Setting up libsqlite3-0:armhf (3.14.2-1) ...
Setting up libcolamd2:armhf (1:4.5.3-1) ...
Setting up libccolamd2:armhf (1:4.5.3-1) ...
Setting up libffi6:armhf (3.2.1-6) ...
Setting up icu-devtools (57.1-4) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up ruby-minitest (5.9.0-1) ...
Setting up ca-certificates (20160104) ...
Setting up autopoint (0.19.8.1-1) ...
Setting up ruby-power-assert (0.3.0-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libfile-stripnondeterminism-perl (0.028-1) ...
Setting up libbtf1:armhf (1:4.5.3-1) ...
Setting up libldl2:armhf (1:4.5.3-1) ...
Setting up libcxsparse3:armhf (1:4.5.3-1) ...
Setting up gfortran-6 (6.1.1-11+rpi1) ...
Setting up libboost-regex1.61.0:armhf (1.61.0+dfsg-2.1) ...
Setting up ruby-test-unit (3.1.7-2) ...
Setting up libsqlite3-dev:armhf (3.14.2-1) ...
Setting up libgsl-dev (2.2.1+dfsg-1) ...
Setting up liblapack3 (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libglib2.0-0:armhf (2.50.0-1) ...
No schema files found: doing nothing.
Setting up librbio2:armhf (1:4.5.3-1) ...
Setting up libcamd2:armhf (1:4.5.3-1) ...
Setting up libbamtools-dev (2.4.0+dfsg-6) ...
Setting up libklu1:armhf (1:4.5.3-1) ...
Setting up autoconf (2.69-10) ...
Setting up libicu-dev (57.1-4) ...
Setting up file (1:5.28-4) ...
Setting up libkrb5support0:armhf (1.14.3+dfsg-2) ...
Setting up libcholmod3:armhf (1:4.5.3-1) ...
Setting up libcroco3:armhf (0.6.11-2) ...
Setting up libboost-regex1.61-dev:armhf (1.61.0+dfsg-2.1) ...
Setting up libp11-kit0:armhf (0.23.2-5) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up rubygems-integration (1.10) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libspqr2:armhf (1:4.5.3-1) ...
Setting up libtool (2.4.6-2) ...
Setting up gfortran (4:6.1.1-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libboost-iostreams1.61-dev:armhf (1.61.0+dfsg-2.1) ...
Setting up libk5crypto3:armhf (1.14.3+dfsg-2) ...
Setting up gettext (0.19.8.1-1) ...
Setting up libblas-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libgnutls30:armhf (3.5.4-2) ...
Setting up libumfpack5:armhf (1:4.5.3-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libldap-2.4-2:armhf (2.4.42+dfsg-2+rpi1+b2) ...
Setting up libboost-iostreams-dev:armhf (1.61.0.2) ...
Setting up libkrb5-3:armhf (1.14.3+dfsg-2) ...
Setting up liblapack-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up po-debconf (1.0.19) ...
Setting up libgssapi-krb5-2:armhf (1.14.3+dfsg-2) ...
Setting up libsuitesparse-dev:armhf (1:4.5.3-1) ...
Setting up libcurl3-gnutls:armhf (7.50.1-1) ...
Setting up liblpsolve55-dev (5.5.0.15-4) ...
Setting up libhts1:armhf (1.3.1-3+rpi1) ...
Setting up libhts-dev:armhf (1.3.1-3+rpi1) ...
Setting up dh-autoreconf (12) ...
Setting up rake (10.5.0-2) ...
Setting up dh-strip-nondeterminism (0.028-1) ...
Setting up libruby2.3:armhf (2.3.1-5) ...
Setting up debhelper (10) ...
Setting up ruby2.3 (2.3.1-5) ...
Setting up ruby (1:2.3.0+4) ...
Setting up asciidoctor (1.5.4-2) ...
Setting up sbuild-build-depends-augustus-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.23-4) ...
Processing triggers for ca-certificates (20160104) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.10 g++-6_6.1.1-11+rpi1 gcc-6_6.1.1-11+rpi1 libc6-dev_2.23-4 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.1.1-11+rpi1 libstdc++6_6.1.1-11+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.115 apt_1.3 asciidoctor_1.5.4-2 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.40 bash_4.4-1 binutils_2.26.1-1 bsdmainutils_9.0.10 bsdutils_1:2.28.1-1 build-essential_12.2 bzip2_1.0.6-8 ca-certificates_20160104 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:6.1.1-1 cpp-6_6.1.1-11+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dmsetup_2:1.02.133-1 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-2 file_1:5.28-4 findutils_4.6.0+git+20160703-2 fuse2fs_1.43.1-1 g++_4:6.1.1-1 g++-6_6.1.1-11+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.1.1-11+rpi1 gcc-6-base_6.1.1-11+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:6.1.1-1 gfortran-6_6.1.1-11+rpi1 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 icu-devtools_57.1-4 init_1.45 init-system-helpers_1.45 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libamd2_1:4.5.3-1 libapparmor1_2.10.95-4 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.3 libarchive-zip-perl_1.59-1 libasan1_4.9.3-14 libasan3_6.1.1-11+rpi1 libatomic1_6.1.1-11+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1 libaudit1_1:2.6.6-1 libbam-dev_0.1.19-2 libbamtools-dev_2.4.0+dfsg-6 libbamtools2.4.0_2.4.0+dfsg-6 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.28.1-1 libboost-iostreams-dev_1.61.0.2 libboost-iostreams1.61-dev_1.61.0+dfsg-2.1 libboost-iostreams1.61.0_1.61.0+dfsg-2.1 libboost-regex1.61-dev_1.61.0+dfsg-2.1 libboost-regex1.61.0_1.61.0+dfsg-2.1 libboost1.61-dev_1.61.0+dfsg-2.1 libbsd0_0.8.3-1 libbtf1_1:4.5.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.23-4 libc-dev-bin_2.23-4 libc6_2.23-4 libc6-dev_2.23-4 libcamd2_1:4.5.3-1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-11+rpi1 libccolamd2_1:4.5.3-1 libcholmod3_1:4.5.3-1 libcolamd2_1:4.5.3-1 libcomerr2_1.43.1-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.0-2 libcurl3-gnutls_7.50.1-1 libcxsparse3_1:4.5.3-1 libdb5.3_5.3.28-12 libdbus-1-3_1.10.10-1 libdebconfclient0_0.215 libdevmapper1.02.1_2:1.02.133-1 libdpkg-perl_1.18.10 libdrm2_2.4.70-1 libfakeroot_1.21-2 libfdisk1_2.28.1-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-4.9-dev_4.9.3-14 libgcc-6-dev_6.1.1-11+rpi1 libgcc1_1:6.1.1-11+rpi1 libgcrypt20_1.7.3-1 libgdbm3_1.8.3-14 libgfortran-6-dev_6.1.1-11+rpi1 libgfortran3_6.1.1-11+rpi1 libglib2.0-0_2.50.0-1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.4-2 libgomp1_6.1.1-11+rpi1 libgpg-error0_1.24-1 libgsl-dev_2.2.1+dfsg-1 libgsl2_2.2.1+dfsg-1 libgssapi-krb5-2_1.14.3+dfsg-2 libhogweed4_3.2-1 libhts-dev_1.3.1-3+rpi1 libhts1_1.3.1-3+rpi1 libicu-dev_57.1-4 libicu57_57.1-4 libidn11_1.33-1 libisl15_0.17.1-1 libk5crypto3_1.14.3+dfsg-2 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libklu1_1:4.5.3-1 libkmod2_22-1.1 libkrb5-3_1.14.3+dfsg-2 libkrb5support0_1.14.3+dfsg-2 liblapack-dev_3.6.1-2 liblapack3_3.6.1-2 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 libldl2_1:4.5.3-1 liblpsolve55-dev_5.5.0.15-4 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic-mgc_1:5.28-4 libmagic1_1:5.28-4 libmetis5_5.1.0.dfsg-5 libmount1_2.28.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160917-1 libncurses5-dev_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnettle6_3.2-1 libnghttp2-14_1.14.1-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc3-3 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps3_2:3.3.9-9 libprocps6_2:3.3.12-2 librbio2_1:4.5.3-1 libreadline6_6.3-8+b3 librtmp1_2.4+20151223.gitfa8646d.1-1 libruby2.3_2.3.1-5 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-3+b1 libsmartcols1_2.28.1-1 libspqr2_1:4.5.3-1 libsqlite3-0_3.14.2-1 libsqlite3-dev_3.14.2-1 libss2_1.43.1-1 libssh2-1_1.7.0-1 libssl1.0.2_1.0.2j-1 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.1.1-11+rpi1 libstdc++6_6.1.1-11+rpi1 libsuitesparse-dev_1:4.5.3-1 libsuitesparseconfig4_1:4.5.3-1 libsystemd0_231-4 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160917-1 libtinfo5_6.0+20160917-1 libtool_2.4.6-2 libubsan0_6.1.1-11+rpi1 libudev1_231-4 libumfpack5_1:4.5.3-1 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.1-1 libxml2_2.9.4+dfsg1-2 libyaml-0-2_0.1.7-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.2 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.07-1 mawk_1.3.3-17 mount_2.28.1-1 multiarch-support_2.23-4 nano_2.6.3-1 ncurses-base_6.0+20160625-1 ncurses-bin_6.0+20160625-1 openssl_1.0.2j-1 passwd_1:4.2-3.2 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.24_5.24.1~rc3-3 po-debconf_1.0.19 procps_2:3.3.12-2 rake_10.5.0-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 ruby_1:2.3.0+4 ruby-did-you-mean_1.0.0-2 ruby-minitest_5.9.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_0.3.0-1 ruby-test-unit_3.1.7-2 ruby2.3_2.3.1-5 rubygems-integration_1.10 sbuild-build-depends-augustus-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_231-4 systemd-sysv_231-4 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 tzdata_2016g-1 udev_231-4 util-linux_2.28.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun Sep 25 13:10:39 2016 UTC using RSA key ID F09F4872
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./augustus_3.2.2+dfsg-2.dsc
dpkg-source: info: extracting augustus in augustus-3.2.2+dfsg
dpkg-source: info: unpacking augustus_3.2.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking augustus_3.2.2+dfsg-2.debian.tar.xz
dpkg-source: info: applying search_config_path
dpkg-source: info: applying set_installdir
dpkg-source: info: applying keep_cflags
dpkg-source: info: applying buildflags.patch
dpkg-source: info: applying avoid_PATH_MAX.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-0e6abed7-b7fe-4f43-bdd9-b3279e352a09
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package augustus
dpkg-buildpackage: info: source version 3.2.2+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build augustus-3.2.2+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --parallel
dh_testdir -O--parallel
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
/usr/bin/make -C auxprogs/bam2hints clean
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/bam2hints'
rm -f bam2hints.o bam2hints ../../bin/bam2hints
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/bam2hints'
/usr/bin/make -C auxprogs/homGeneMapping/src clean
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/homGeneMapping/src'
rm -f homGeneMapping gene.o genome.o
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/homGeneMapping/src'
/usr/bin/make -C auxprogs/joingenes clean
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/joingenes'
rm -rf *o joingenes; rm -rf ../../bin/joingenes
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/joingenes'
rm -rf bin
make[1]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
dh_clean -O--parallel
debian/rules build-arch
dh build-arch --parallel
dh_testdir -a -O--parallel
dh_update_autotools_config -a -O--parallel
dh_auto_configure -a -O--parallel
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
mkdir -p bin
/usr/bin/make -C auxprogs/bam2hints
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/bam2hints'
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -c bam2hints.cc -o bam2hints.o -I/usr/include/bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -O2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -o bam2hints bam2hints.o -lbamtools -lz
cp bam2hints ../../bin
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/bam2hints'
/usr/bin/make -C auxprogs/homGeneMapping/src
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/homGeneMapping/src'
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -o gene.o gene.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -o genome.o genome.cc -I../include
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -ansi -pedantic -std=c++0x -pthread -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -o homGeneMapping main.cc gene.o genome.o -I../include -fPIE -pie -Wl,-z,relro -Wl,-z,now
cp homGeneMapping ../../../bin/homGeneMapping
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/homGeneMapping/src'
/usr/bin/make -C auxprogs/checkTargetSortedness
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/checkTargetSortedness'
gcc -g -Wall -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -c checkTargetSortedness.c -o checkTargetSortedness.o -I/usr/include/samtools -I.
gcc -g -Wall -O2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now checkTargetSortedness.o -o checkTargetSortedness -lbam -lcurses -lm -lz -lpthread
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/checkTargetSortedness'
/usr/bin/make -C auxprogs/joingenes
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/joingenes'
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x joingenes.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x jg_transcript.cpp
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x jg_ios.cpp
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wall -std=gnu++0x joingenes.o jg_transcript.o jg_ios.o -o joingenes -fPIE -pie -Wl,-z,relro -Wl,-z,now
cp joingenes ../../bin/
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/joingenes'
dh_auto_build
make -j4
make[2]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
mkdir -p bin
cd src && make
make[3]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/src'
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o genbank.o genbank.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o properties.o properties.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o pp_profile.o pp_profile.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o pp_hitseq.o pp_hitseq.cc -I../include
pp_profile.cc:91:10: warning: 'std::ostream& PP::operator<<(std::ostream&, const PP::Column&)' has not been declared within PP
ostream& PP::operator<<(ostream& strm, const Column& c) {
^~
In file included from pp_profile.cc:14:0:
../include/pp_profile.hh:274:18: note: only here as a friend
friend ostream& operator<<(ostream&, const Column&);
^~~~~~~~
pp_profile.cc:97:10: warning: 'std::istream& PP::operator>>(std::istream&, PP::Column&)' has not been declared within PP
istream& PP::operator>>(istream& strm, Column& c) {
^~
In file included from pp_profile.cc:14:0:
../include/pp_profile.hh:275:18: note: only here as a friend
friend istream& operator>>(istream&, Column& c);
^~~~~~~~
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o pp_scoring.o pp_scoring.cc -I../include
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from genbank.cc:15:
/usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
# pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
^
In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from genbank.cc:15:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from genbank.cc:15:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o statemodel.o statemodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o namgene.o namgene.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o types.o types.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o gene.o gene.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o evaluation.o evaluation.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o motif.o motif.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o geneticcode.o geneticcode.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o hints.o hints.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o extrinsicinfo.o extrinsicinfo.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o projectio.o projectio.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o intronmodel.o intronmodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o exonmodel.o exonmodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o igenicmodel.o igenicmodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o utrmodel.o utrmodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o merkmal.o merkmal.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o vitmatrix.o vitmatrix.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o lldouble.o lldouble.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o mea.o mea.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o graph.o graph.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o meaPath.o meaPath.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o exoncand.o exoncand.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o randseqaccess.o randseqaccess.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o fasta.o fasta.cc -I../include
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from randseqaccess.cc:16:
/usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
# pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
^
In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from randseqaccess.cc:16:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from randseqaccess.cc:16:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/fasta.hh:18,
from fasta.cc:14:
/usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
# pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
^
In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/fasta.hh:18,
from fasta.cc:14:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/fasta.hh:18,
from fasta.cc:14:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o ncmodel.o ncmodel.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o commontrain.o commontrain.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o igenictrain.o igenictrain.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o introntrain.o introntrain.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o exontrain.o exontrain.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o utrtrain.o utrtrain.cc -I../include
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o dummy.o dummy.cc -I../include
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -fPIE -pie -Wl,-z,relro -Wl,-z,now -o prepareAlign pp_prepare_align.cc
g++ -c -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -o pp_fastBlockSearcher.o pp_fastBlockSearcher.cc -I../include
echo "-Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT" > cxxflags
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -fPIE -pie -Wl,-z,relro -Wl,-z,now -o augustus augustus.cc genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o dummy.o -I../include -lboost_iostreams
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -fPIE -pie -Wl,-z,relro -Wl,-z,now -o fastBlockSearch fastBlockSearch.cc pp_fastBlockSearcher.o types.o properties.o geneticcode.o pp_profile.o lldouble.o -I../include -lboost_iostreams
cp prepareAlign ../bin/
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from augustus.cc:16:
/usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
# pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
^
In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from augustus.cc:16:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from augustus.cc:16:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
g++ -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wno-sign-compare -Wno-strict-overflow -ansi -pedantic -O3 -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -DZIPINPUT -fPIE -pie -Wl,-z,relro -Wl,-z,now -o etraining etraining.cc commontrain.o igenictrain.o introntrain.o exontrain.o utrtrain.o genbank.o properties.o pp_profile.o pp_hitseq.o pp_scoring.o statemodel.o namgene.o types.o gene.o evaluation.o motif.o geneticcode.o hints.o extrinsicinfo.o projectio.o intronmodel.o exonmodel.o igenicmodel.o utrmodel.o merkmal.o vitmatrix.o lldouble.o mea.o graph.o meaPath.o exoncand.o randseqaccess.o fasta.o ncmodel.o -I../include -lboost_iostreams
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from etraining.cc:15:
/usr/include/boost/type_traits/detail/bool_trait_def.hpp:18:79: note: #pragma message: NOTE: Use of this header (bool_trait_def.hpp) is deprecated
# pragma message("NOTE: Use of this header (bool_trait_def.hpp) is deprecated")
^
In file included from /usr/include/boost/type_traits/detail/bool_trait_def.hpp:21:0,
from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:12,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from etraining.cc:15:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
In file included from /usr/include/boost/iostreams/detail/is_dereferenceable.hpp:13:0,
from /usr/include/boost/iostreams/detail/resolve.hpp:26,
from /usr/include/boost/iostreams/detail/push.hpp:24,
from /usr/include/boost/iostreams/filtering_stream.hpp:19,
from ../include/genbank.hh:26,
from etraining.cc:15:
/usr/include/boost/type_traits/detail/template_arity_spec.hpp:13:84: note: #pragma message: NOTE: Use of this header (template_arity_spec.hpp) is deprecated
# pragma message("NOTE: Use of this header (template_arity_spec.hpp) is deprecated")
^
cp fastBlockSearch ../bin/
cp augustus ../bin/
cp etraining ../bin/
make[3]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/src'
cd auxprogs && make
make[3]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs'
cd bam2hints; make;
make[4]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/bam2hints'
make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[4]: 'bam2hints' is up to date.
make[4]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/bam2hints'
cd compileSpliceCands; make;
make[4]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/compileSpliceCands'
make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
gcc -Wall -pedantic -ansi -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c compileSpliceCands.c
compileSpliceCands.c: In function 'getChromosome':
compileSpliceCands.c:226:2: warning: this decimal constant is unsigned only in ISO C90
s = malloc(3500000000);
^
compileSpliceCands.c: In function 'parseList':
compileSpliceCands.c:350:32: warning: 'left' may be used uninitialized in this function [-Wmaybe-uninitialized]
findPossibleSpliceSites(left->name,actualChromosome,left->startPos,left->endPos,right->startPos,right->endPos,left->strand,right->strand);
^~~~
compileSpliceCands.c: In function 'main':
compileSpliceCands.c:563:3: warning: 'chromosomeLength' may be used uninitialized in this function [-Wmaybe-uninitialized]
parseList(&L,actualChromosome,chromosomeLength,oldname,maxSpliceSiteDiff,threshold,maxIntronLength);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cc -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c -o list.o list.c
gcc -o compileSpliceCands compileSpliceCands.o list.o -fPIE -pie -Wl,-z,relro -Wl,-z,now;
make[4]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/compileSpliceCands'
cd filterBam; make;
make[4]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/filterBam'
make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
(cd src;make)
make[5]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/filterBam/src'
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c filterBam.cc -o filterBam.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/MatePairs.cc -o MatePairs.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/getReferenceName.cc -o getReferenceName.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/initOptions.cc -o initOptions.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/SingleAlignment.cc -o SingleAlignment.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/printElapsedTime.cc -o printElapsedTime.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/sumMandIOperations.cc -o sumMandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/sumDandIOperations.cc -o sumDandIOperations.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -std=c++0x -Wdate-time -D_FORTIFY_SOURCE=2 -c functions/PairednessCoverage.cc -o PairednessCoverage.o -I/usr/include/bamtools -Iheaders -I./bamtools
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/augustus-3.2.2+dfsg=. -fPIE -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -pie -Wl,-z,relro -Wl,-z,now -std=c++0x -fPIE -pie -Wl,-z,relro -Wl,-z,now filterBam.o MatePairs.o getReferenceName.o initOptions.o SingleAlignment.o printElapsedTime.o sumMandIOperations.o sumDandIOperations.o PairednessCoverage.o -o filterBam -lbamtools -lz
filterBam compiled with BAMTOOLS=/usr/include/bamtools
cp filterBam ../../../bin/filterBam
make[5]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/filterBam/src'
make[4]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/filterBam'
cd homGeneMapping; make;
make[4]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/homGeneMapping'
make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
(cd src; make)
make[5]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/homGeneMapping/src'
make[5]: Nothing to be done for 'all'.
make[5]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/homGeneMapping/src'
make[4]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/homGeneMapping'
cd joingenes; make;
make[4]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/joingenes'
make[4]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs/joingenes'
make[3]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg/auxprogs'
make[2]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
asciidoctor -a docdate='' -b manpage debian/mansrc/*adoc
make[1]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
dh_auto_test -a -O--parallel
fakeroot debian/rules binary-arch
dh binary-arch --parallel
dh_testroot -a -O--parallel
dh_prep -a -O--parallel
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
mkdir -p debian/augustus/usr/bin
install bin/* debian/augustus/usr/bin
install auxprogs/checkTargetSortedness/checkTargetSortedness \
debian/augustus/usr/bin
install auxprogs/homGeneMapping/src/homGeneMapping \
debian/augustus/usr/bin
install auxprogs/joingenes/joingenes \
debian/augustus/usr/bin
mkdir -p debian/augustus/usr/share/augustus
cp -r scripts debian/augustus/usr/share/augustus
chmod -R -x debian/augustus/usr/share/augustus/scripts/*
chmod +x debian/augustus/usr/share/augustus/scripts/checkUTR \
debian/augustus/usr/share/augustus/scripts/*.pl
mkdir -p debian/augustus-doc/usr/share/doc/augustus
cp README* debian/augustus-doc/usr/share/doc/augustus
cp docs/*.txt debian/augustus-doc/usr/share/doc/augustus
cp -r docs/tutorial \
debian/augustus-doc/usr/share/doc/augustus
mkdir -p debian/augustus-data/usr/share/augustus
cp -r config debian/augustus-data/usr/share/augustus
find debian/augustus-data/usr/share/augustus \
-type f -exec chmod -x {} \;
make[1]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
dh_installdocs -a -O--parallel
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
dh_installchangelogs -k HISTORY.TXT
make[1]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
dh_installman -a -O--parallel
dh_perl -a -O--parallel
dh_link -a -O--parallel
dh_strip_nondeterminism -a -O--parallel
debian/rules override_dh_compress
make[1]: Entering directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
dh_compress -Xtutorial
make[1]: Leaving directory '/<<BUILDDIR>>/augustus-3.2.2+dfsg'
dh_fixperms -a -O--parallel
dh_strip -a -O--parallel
dh_makeshlibs -a -O--parallel
dh_shlibdeps -a -O--parallel
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/augustus/usr/bin/checkTargetSortedness was not linked against libtinfo.so.5 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/augustus/usr/bin/checkTargetSortedness was not linked against libncurses.so.5 (it uses none of the library's symbols)
dh_installdeb -a -O--parallel
dh_gencontrol -a -O--parallel
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package augustus: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package augustus: unused substitution variable ${perl:Depends}
dh_md5sums -a -O--parallel
dh_builddeb -a -O--parallel
dpkg-deb: building package 'augustus-dbgsym' in '../augustus-dbgsym_3.2.2+dfsg-2_armhf.deb'.
dpkg-deb: building package 'augustus' in '../augustus_3.2.2+dfsg-2_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../augustus_3.2.2+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build augustus-3.2.2+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20161001-1053
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
augustus_3.2.2+dfsg-2_armhf.changes:
------------------------------------
Format: 1.8
Date: Sun, 25 Sep 2016 13:00:07 +0000
Source: augustus
Binary: augustus augustus-data augustus-doc
Architecture: armhf
Version: 3.2.2+dfsg-2
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Sascha Steinbiss <satta@debian.org>
Description:
augustus - gene prediction in eukaryotic genomes
augustus-data - data files for AUGUSTUS
augustus-doc - documentation files for AUGUSTUS
Changes:
augustus (3.2.2+dfsg-2) unstable; urgency=medium
.
* Update uploader email address.
* Fix manpage option entry.
* Avoid use of PATH_MAX. This enables building on Hurd.
* Bump Standards-Version.
Checksums-Sha1:
0e5db21b6a9c592696090aa4e06da0f37ec8b7b3 14707936 augustus-dbgsym_3.2.2+dfsg-2_armhf.deb
7e6386c7594b693d8fe44ade2fc961371cb55fff 951880 augustus_3.2.2+dfsg-2_armhf.deb
Checksums-Sha256:
364ab4a60f033ef05ef597ab3ea6c887aef58276e25d3a243fc616c3ce113357 14707936 augustus-dbgsym_3.2.2+dfsg-2_armhf.deb
153664fcc0f9d8b568d36c595376f153b1698b1a5e2ee6d15c67a3d74a9f5cd2 951880 augustus_3.2.2+dfsg-2_armhf.deb
Files:
d73e4b94864e30136f6cc7c4a30129ea 14707936 debug extra augustus-dbgsym_3.2.2+dfsg-2_armhf.deb
1960b3a631357b303de859431c3879a5 951880 science optional augustus_3.2.2+dfsg-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
augustus-dbgsym_3.2.2+dfsg-2_armhf.deb
--------------------------------------
new debian package, version 2.0.
size 14707936 bytes: control archive=940 bytes.
763 bytes, 13 lines control
954 bytes, 9 lines md5sums
Package: augustus-dbgsym
Source: augustus
Version: 3.2.2+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 14969
Depends: augustus (= 3.2.2+dfsg-2)
Section: debug
Priority: extra
Homepage: http://bioinf.uni-greifswald.de/augustus/
Description: Debug symbols for augustus
Auto-Built-Package: debug-symbols
Build-Ids: 247c7a128c86b96f3281f15602dba338a4f82c49 4a00d6648204f02d8c48a1c8a2d1eb6b49159956 50882d8ac93c8f354b699d0556dc5aa996ff45dc 78e3a20569122b2fec9b64e591baf62734247895 8746cb1cc64f76824b18015f58f33a930770d3c3 890eb376a966ae77b245f657280028ef6e71dd86 aae5482a96c892699893ac0a5f273ed96315bbe7 af5f6d2cdff4a292a5a957ede4b3c109ea56fcaf dfeab10b3c846f3a94fe30354a5fd8b214715b64
drwxr-xr-x root/root 0 2016-09-25 13:00 ./
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/debug/.build-id/24/
-rw-r--r-- root/root 138116 2016-09-25 13:00 ./usr/lib/debug/.build-id/24/7c7a128c86b96f3281f15602dba338a4f82c49.debug
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/debug/.build-id/4a/
-rw-r--r-- root/root 5801864 2016-09-25 13:00 ./usr/lib/debug/.build-id/4a/00d6648204f02d8c48a1c8a2d1eb6b49159956.debug
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/debug/.build-id/50/
-rw-r--r-- root/root 583340 2016-09-25 13:00 ./usr/lib/debug/.build-id/50/882d8ac93c8f354b699d0556dc5aa996ff45dc.debug
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/debug/.build-id/78/
-rw-r--r-- root/root 18780 2016-09-25 13:00 ./usr/lib/debug/.build-id/78/e3a20569122b2fec9b64e591baf62734247895.debug
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/debug/.build-id/87/
-rw-r--r-- root/root 6491428 2016-09-25 13:00 ./usr/lib/debug/.build-id/87/46cb1cc64f76824b18015f58f33a930770d3c3.debug
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/debug/.build-id/89/
-rw-r--r-- root/root 944048 2016-09-25 13:00 ./usr/lib/debug/.build-id/89/0eb376a966ae77b245f657280028ef6e71dd86.debug
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/debug/.build-id/aa/
-rw-r--r-- root/root 567632 2016-09-25 13:00 ./usr/lib/debug/.build-id/aa/e5482a96c892699893ac0a5f273ed96315bbe7.debug
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/debug/.build-id/af/
-rw-r--r-- root/root 651284 2016-09-25 13:00 ./usr/lib/debug/.build-id/af/5f6d2cdff4a292a5a957ede4b3c109ea56fcaf.debug
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/lib/debug/.build-id/df/
-rw-r--r-- root/root 108816 2016-09-25 13:00 ./usr/lib/debug/.build-id/df/eab10b3c846f3a94fe30354a5fd8b214715b64.debug
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/share/
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-09-25 13:00 ./usr/share/doc/augustus-dbgsym -> augustus
augustus_3.2.2+dfsg-2_armhf.deb
-------------------------------
new debian package, version 2.0.
size 951880 bytes: control archive=4347 bytes.
1271 bytes, 21 lines control
8396 bytes, 111 lines md5sums
Package: augustus
Version: 3.2.2+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 4052
Depends: libbamtools2.4.0, libboost-iostreams1.61.0, libc6 (>= 2.15), libgcc1 (>= 1:4.0), libncurses5 (>= 6), libstdc++6 (>= 6), libtinfo5 (>= 6), zlib1g (>= 1:1.2.3.3), libgsl2, augustus-data, libhts1
Section: science
Priority: optional
Homepage: http://bioinf.uni-greifswald.de/augustus/
Description: gene prediction in eukaryotic genomes
AUGUSTUS is a software for gene prediction in eukaryotic genomic sequences
that is based on a generalized hidden Markov model (HMM), a probabilistic
model of a sequence and its gene structure. After learning gene structures
from a reference annotation, AUGUSTUS uses the HMM to recognize genes in a new
sequence and annotates it with the regions of identified genes. External hints,
e.g. from RNA sequencing, EST or protein alignments etc. can be used to guide
and improve the gene finding process. The result is the set of most likely gene
structures that comply with all given user constraints, if such gene
structures exist.
AUGUSTUS already includes prebuilt HMMs for many species, as well as scripts
to train custom models using annotated genomes.
drwxr-xr-x root/root 0 2016-09-25 13:00 ./
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/bin/
-rwxr-xr-x root/root 1224928 2016-09-25 13:00 ./usr/bin/augustus
-rwxr-xr-x root/root 30628 2016-09-25 13:00 ./usr/bin/bam2hints
-rwxr-xr-x root/root 92644 2016-09-25 13:00 ./usr/bin/checkTargetSortedness
-rwxr-xr-x root/root 1396960 2016-09-25 13:00 ./usr/bin/etraining
-rwxr-xr-x root/root 266032 2016-09-25 13:00 ./usr/bin/fastBlockSearch
-rwxr-xr-x root/root 157264 2016-09-25 13:00 ./usr/bin/filterBam
-rwxr-xr-x root/root 108260 2016-09-25 13:00 ./usr/bin/homGeneMapping
-rwxr-xr-x root/root 120372 2016-09-25 13:00 ./usr/bin/joingenes
-rwxr-xr-x root/root 30228 2016-09-25 13:00 ./usr/bin/prepareAlign
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/share/
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/share/augustus/
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/share/augustus/scripts/
-rw-r--r-- root/root 12539 2016-09-25 13:00 ./usr/share/augustus/scripts/README.autoAug
-rw-r--r-- root/root 12247 2016-09-25 13:00 ./usr/share/augustus/scripts/SplicedAlignment.pm
-rwxr-xr-x root/root 3022 2016-09-25 13:00 ./usr/share/augustus/scripts/augustus2browser.pl
-rwxr-xr-x root/root 389 2016-09-25 13:00 ./usr/share/augustus/scripts/augustus2gbrowse.pl
-rwxr-xr-x root/root 48984 2016-09-25 13:00 ./usr/share/augustus/scripts/autoAug.pl
-rwxr-xr-x root/root 20476 2016-09-25 13:00 ./usr/share/augustus/scripts/autoAugPred.pl
-rwxr-xr-x root/root 44143 2016-09-25 13:00 ./usr/share/augustus/scripts/autoAugTrain.pl
-rw-r--r-- root/root 195 2016-09-25 13:00 ./usr/share/augustus/scripts/autoRun.pathInfo
-rwxr-xr-x root/root 3370 2016-09-25 13:00 ./usr/share/augustus/scripts/bedgraph2wig.pl
-rwxr-xr-x root/root 4442 2016-09-25 13:00 ./usr/share/augustus/scripts/blat2gbrowse.pl
-rwxr-xr-x root/root 30278 2016-09-25 13:00 ./usr/share/augustus/scripts/blat2hints.pl
-rwxr-xr-x root/root 11310 2016-09-25 13:00 ./usr/share/augustus/scripts/block2prfl.pl
-rwxr-xr-x root/root 2233 2016-09-25 13:00 ./usr/share/augustus/scripts/cegma2gff.pl
-rwxr-xr-x root/root 3843 2016-09-25 13:00 ./usr/share/augustus/scripts/checkParamArchive.pl
-rwxr-xr-x root/root 1151 2016-09-25 13:00 ./usr/share/augustus/scripts/checkUTR
-rwxr-xr-x root/root 535 2016-09-25 13:00 ./usr/share/augustus/scripts/cleanDOSfasta.pl
-rwxr-xr-x root/root 7558 2016-09-25 13:00 ./usr/share/augustus/scripts/clusterAndSplitGenes.pl
-rwxr-xr-x root/root 4879 2016-09-25 13:00 ./usr/share/augustus/scripts/createAugustusJoblist.pl
-rwxr-xr-x root/root 3233 2016-09-25 13:00 ./usr/share/augustus/scripts/del_from_prfl.pl
-rwxr-xr-x root/root 9675 2016-09-25 13:00 ./usr/share/augustus/scripts/evalCGP.pl
-rwxr-xr-x root/root 3043 2016-09-25 13:00 ./usr/share/augustus/scripts/exonerate2hints.pl
-rwxr-xr-x root/root 1301 2016-09-25 13:00 ./usr/share/augustus/scripts/exoniphyDb2hints.pl
-rwxr-xr-x root/root 507 2016-09-25 13:00 ./usr/share/augustus/scripts/extractTranscriptEnds.pl
-rwxr-xr-x root/root 435 2016-09-25 13:00 ./usr/share/augustus/scripts/filter-ppx.pl
-rwxr-xr-x root/root 850 2016-09-25 13:00 ./usr/share/augustus/scripts/filterGenes.pl
-rwxr-xr-x root/root 2188 2016-09-25 13:00 ./usr/share/augustus/scripts/filterGenesIn_mRNAname.pl
-rwxr-xr-x root/root 1716 2016-09-25 13:00 ./usr/share/augustus/scripts/filterGenesOut_mRNAname.pl
-rwxr-xr-x root/root 1122 2016-09-25 13:00 ./usr/share/augustus/scripts/filterInFrameStopCodons.pl
-rwxr-xr-x root/root 2923 2016-09-25 13:00 ./usr/share/augustus/scripts/filterMaf.pl
-rwxr-xr-x root/root 17619 2016-09-25 13:00 ./usr/share/augustus/scripts/filterPSL.pl
-rwxr-xr-x root/root 4465 2016-09-25 13:00 ./usr/share/augustus/scripts/filterShrimp.pl
-rwxr-xr-x root/root 2081 2016-09-25 13:00 ./usr/share/augustus/scripts/filterSpliceHints.pl
-rwxr-xr-x root/root 3098 2016-09-25 13:00 ./usr/share/augustus/scripts/gbSmallDNA2gff.pl
-rw-r--r-- root/root 8078 2016-09-25 13:00 ./usr/share/augustus/scripts/gbrowse.conf
-rwxr-xr-x root/root 3769 2016-09-25 13:00 ./usr/share/augustus/scripts/gbrowseold2gff3.pl
-rwxr-xr-x root/root 7331 2016-09-25 13:00 ./usr/share/augustus/scripts/getAnnoFasta.pl
-rwxr-xr-x root/root 16996 2016-09-25 13:00 ./usr/share/augustus/scripts/gff2gbSmallDNA.pl
-rw-r--r-- root/root 1758 2016-09-25 13:00 ./usr/share/augustus/scripts/gff2ps_mycustom
-rwxr-xr-x root/root 4074 2016-09-25 13:00 ./usr/share/augustus/scripts/gffGetmRNA.pl
-rwxr-xr-x root/root 3109 2016-09-25 13:00 ./usr/share/augustus/scripts/gp2othergp.pl
-rwxr-xr-x root/root 13647 2016-09-25 13:00 ./usr/share/augustus/scripts/gtf2gff.pl
-rwxr-xr-x root/root 12589 2016-09-25 13:00 ./usr/share/augustus/scripts/hal2maf_split.pl
-rw-r--r-- root/root 8166 2016-09-25 13:00 ./usr/share/augustus/scripts/helpMod.pm
-rwxr-xr-x root/root 4516 2016-09-25 13:00 ./usr/share/augustus/scripts/intron2exex.pl
-rwxr-xr-x root/root 1427 2016-09-25 13:00 ./usr/share/augustus/scripts/joinPeptides.pl
-rwxr-xr-x root/root 8749 2016-09-25 13:00 ./usr/share/augustus/scripts/join_aug_pred.pl
-rwxr-xr-x root/root 1230 2016-09-25 13:00 ./usr/share/augustus/scripts/join_mult_hints.pl
-rwxr-xr-x root/root 3469 2016-09-25 13:00 ./usr/share/augustus/scripts/maf2conswig.pl
-rwxr-xr-x root/root 468 2016-09-25 13:00 ./usr/share/augustus/scripts/makeMatchLists.pl
-rwxr-xr-x root/root 16749 2016-09-25 13:00 ./usr/share/augustus/scripts/makeUtrTrainingSet.pl
-rwxr-xr-x root/root 1658 2016-09-25 13:00 ./usr/share/augustus/scripts/maskNregions.pl
-rwxr-xr-x root/root 2015 2016-09-25 13:00 ./usr/share/augustus/scripts/moveParameters.pl
-rwxr-xr-x root/root 20693 2016-09-25 13:00 ./usr/share/augustus/scripts/msa2prfl.pl
-rwxr-xr-x root/root 7113 2016-09-25 13:00 ./usr/share/augustus/scripts/new_species.pl
-rwxr-xr-x root/root 7092 2016-09-25 13:00 ./usr/share/augustus/scripts/opt_init_and_term_probs.pl
-rwxr-xr-x root/root 65114 2016-09-25 13:00 ./usr/share/augustus/scripts/optimize_augustus.pl
-rwxr-xr-x root/root 3606 2016-09-25 13:00 ./usr/share/augustus/scripts/parseSim4Output.pl
-rwxr-xr-x root/root 17132 2016-09-25 13:00 ./usr/share/augustus/scripts/partition_gtf2gb.pl
-rwxr-xr-x root/root 2108 2016-09-25 13:00 ./usr/share/augustus/scripts/pasapolyA2hints.pl
-rwxr-xr-x root/root 3369 2016-09-25 13:00 ./usr/share/augustus/scripts/peptides2alternatives.pl
-rwxr-xr-x root/root 6792 2016-09-25 13:00 ./usr/share/augustus/scripts/peptides2hints.pl
-rwxr-xr-x root/root 2761 2016-09-25 13:00 ./usr/share/augustus/scripts/phastconsDB2hints.pl
-rwxr-xr-x root/root 2330 2016-09-25 13:00 ./usr/share/augustus/scripts/polyA2hints.pl
-rwxr-xr-x root/root 10571 2016-09-25 13:00 ./usr/share/augustus/scripts/prints2prfl.pl
-rwxr-xr-x root/root 8032 2016-09-25 13:00 ./usr/share/augustus/scripts/pslMap.pl
-rwxr-xr-x root/root 1689 2016-09-25 13:00 ./usr/share/augustus/scripts/randomSplit.pl
-rwxr-xr-x root/root 584 2016-09-25 13:00 ./usr/share/augustus/scripts/ratewig.pl
-rwxr-xr-x root/root 1946 2016-09-25 13:00 ./usr/share/augustus/scripts/retroDB2hints.pl
-rwxr-xr-x root/root 1403 2016-09-25 13:00 ./usr/share/augustus/scripts/rmRedundantHints.pl
-rwxr-xr-x root/root 723 2016-09-25 13:00 ./usr/share/augustus/scripts/runAllSim4.pl
-rwxr-xr-x root/root 4992 2016-09-25 13:00 ./usr/share/augustus/scripts/samMap.pl
-rwxr-xr-x root/root 1159 2016-09-25 13:00 ./usr/share/augustus/scripts/scipiogff2gff.pl
-rwxr-xr-x root/root 531 2016-09-25 13:00 ./usr/share/augustus/scripts/selectLongestORFs.pl
-rwxr-xr-x root/root 1215 2016-09-25 13:00 ./usr/share/augustus/scripts/simpleFastaHeaders.pl
-rwxr-xr-x root/root 2598 2016-09-25 13:00 ./usr/share/augustus/scripts/simplifyFastaHeaders.pl
-rwxr-xr-x root/root 1786 2016-09-25 13:00 ./usr/share/augustus/scripts/splitMfasta.pl
-rwxr-xr-x root/root 861 2016-09-25 13:00 ./usr/share/augustus/scripts/split_wiggle.pl
-rwxr-xr-x root/root 2158 2016-09-25 13:00 ./usr/share/augustus/scripts/summarizeACGTcontent.pl
-rwxr-xr-x root/root 18606 2016-09-25 13:00 ./usr/share/augustus/scripts/transMap2hints.pl
-rwxr-xr-x root/root 1964 2016-09-25 13:00 ./usr/share/augustus/scripts/uniquePeptides.pl
-rwxr-xr-x root/root 2395 2016-09-25 13:00 ./usr/share/augustus/scripts/utrgff2gbrowse.pl
-rw-r--r-- root/root 2706 2016-09-25 13:00 ./usr/share/augustus/scripts/webserver-results.body
-rw-r--r-- root/root 2134 2016-09-25 13:00 ./usr/share/augustus/scripts/webserver-results.head
-rw-r--r-- root/root 3105 2016-09-25 13:00 ./usr/share/augustus/scripts/webserver-results.tail
-rwxr-xr-x root/root 1602 2016-09-25 13:00 ./usr/share/augustus/scripts/weedMaf.pl
-rwxr-xr-x root/root 5374 2016-09-25 13:00 ./usr/share/augustus/scripts/wig2hints.pl
-rwxr-xr-x root/root 2881 2016-09-25 13:00 ./usr/share/augustus/scripts/wigchoose.pl
-rwxr-xr-x root/root 15629 2016-09-25 13:00 ./usr/share/augustus/scripts/writeResultsPage.pl
-rwxr-xr-x root/root 9700 2016-09-25 13:00 ./usr/share/augustus/scripts/yaml2gff.1.4.pl
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/share/doc/augustus/
lrwxrwxrwx root/root 0 2016-09-25 13:00 ./usr/share/doc/augustus/HISTORY.TXT.gz -> changelog.gz
-rw-r--r-- root/root 304 2016-09-25 13:00 ./usr/share/doc/augustus/changelog.Debian.gz
-rw-r--r-- root/root 7125 2016-03-29 14:38 ./usr/share/doc/augustus/changelog.gz
-rw-r--r-- root/root 3365 2016-04-02 20:39 ./usr/share/doc/augustus/copyright
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/share/man/
drwxr-xr-x root/root 0 2016-09-25 13:00 ./usr/share/man/man1/
-rw-r--r-- root/root 1656 2016-09-25 13:00 ./usr/share/man/man1/augustus.1.gz
-rw-r--r-- root/root 1499 2016-09-25 13:00 ./usr/share/man/man1/bam2hints.1.gz
-rw-r--r-- root/root 579 2016-09-25 13:00 ./usr/share/man/man1/checkTargetSortedness.1.gz
-rw-r--r-- root/root 692 2016-09-25 13:00 ./usr/share/man/man1/consensusFinder.1.gz
-rw-r--r-- root/root 683 2016-09-25 13:00 ./usr/share/man/man1/etraining.1.gz
-rw-r--r-- root/root 1315 2016-09-25 13:00 ./usr/share/man/man1/fastBlockSearch.1.gz
-rw-r--r-- root/root 1720 2016-09-25 13:00 ./usr/share/man/man1/filterBam.1.gz
-rw-r--r-- root/root 1482 2016-09-25 13:00 ./usr/share/man/man1/homGeneMapping.1.gz
-rw-r--r-- root/root 2010 2016-09-25 13:00 ./usr/share/man/man1/joingenes.1.gz
-rw-r--r-- root/root 620 2016-09-25 13:00 ./usr/share/man/man1/prepareAlign.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 683940
Build-Time: 829
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 579
Job: augustus_3.2.2+dfsg-2
Machine Architecture: armhf
Package: augustus
Package-Time: 1491
Source-Version: 3.2.2+dfsg-2
Space: 683940
Status: successful
Version: 3.2.2+dfsg-2
--------------------------------------------------------------------------------
Finished at 20161001-1053
Build needed 00:24:51, 683940k disc space