ataqv →
1.2.1+ds-2 →
armhf → 2021-10-09 06:47:12
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| ataqv 1.2.1+ds-2 (armhf) Sat, 09 Oct 2021 06:19:17 +0000 |
+==============================================================================+
Package: ataqv
Version: 1.2.1+ds-2
Source Version: 1.2.1+ds-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-28ee02d3-3b81-42b2-a218-3f1da2a736ea' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.8 MB in 25s (1015 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ataqv' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/ataqv.git
Please use:
git clone https://salsa.debian.org/med-team/ataqv.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 4079 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main ataqv 1.2.1+ds-2 (dsc) [2245 B]
Get:2 http://172.17.0.1/private bookworm-staging/main ataqv 1.2.1+ds-2 (tar) [4067 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main ataqv 1.2.1+ds-2 (diff) [8996 B]
Fetched 4079 kB in 0s (9299 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/ataqv-oMkAqo/ataqv-1.2.1+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ataqv-oMkAqo' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Kg6uw9/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Kg6uw9/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2838 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (21.8 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libboost-filesystem-dev, libboost-iostreams-dev, libboost-system-dev, libboost-chrono-dev, libhts-dev, libncurses5-dev, libtinfo-dev, zlib1g-dev, libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, help2man, python3, node-d3
Filtered Build-Depends: debhelper-compat (= 13), libboost-filesystem-dev, libboost-iostreams-dev, libboost-system-dev, libboost-chrono-dev, libhts-dev, libncurses5-dev, libtinfo-dev, zlib1g-dev, libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, help2man, python3, node-d3
dpkg-deb: building package 'sbuild-build-depends-ataqv-dummy' in '/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive/sbuild-build-depends-ataqv-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-ataqv-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ Sources [615 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ Packages [699 B]
Fetched 2647 B in 1s (3170 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install ataqv build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fonts-font-awesome gettext
gettext-base groff-base help2man icu-devtools intltool-debian
libarchive-zip-perl libboost-chrono-dev libboost-chrono1.74-dev
libboost-chrono1.74.0 libboost-filesystem-dev libboost-filesystem1.74-dev
libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev
libboost-iostreams1.74.0 libboost-regex1.74-dev libboost-regex1.74.0
libboost-system-dev libboost-system1.74-dev libboost-system1.74.0
libboost1.74-dev libbrotli1 libc-ares2 libcurl3-gnutls libcurl4-gnutls-dev
libdebhelper-perl libdeflate-dev libdeflate0 libelf1 libexpat1 libffi8
libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev
libicu67 libjs-d3-format libjs-jquery libjs-jquery-datatables
libjs-jquery-datatables-extensions liblzma-dev libmagic-mgc libmagic1
libmpdec3 libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libnode72
libpipeline1 libpsl5 libpython3-stdlib libpython3.9-minimal
libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
libtool libuchardet0 libuv1 libxml2 m4 man-db media-types node-commander
node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord
node-d3-collection node-d3-color node-d3-contour node-d3-dispatch
node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force
node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate
node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random
node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape
node-d3-time node-d3-time-format node-d3-timer node-d3-transition
node-d3-voronoi node-d3-zoom node-iconv-lite node-normalize.css node-rw
nodejs po-debconf python3 python3-minimal python3.9 python3.9-minimal
sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libboost1.74-doc
libboost-atomic1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-graph1.74-dev libboost-graph-parallel1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-serialization1.74-dev
libboost-stacktrace1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev pkg-config icu-doc liblzma-doc ncurses-doc
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libjs-html5shiv npm libmail-box-perl python3-doc python3-tk
python3-venv python3.9-venv python3.9-doc binfmt-support
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl javascript-common
libgpm2 publicsuffix libltdl-dev nodejs-doc libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fonts-font-awesome gettext
gettext-base groff-base help2man icu-devtools intltool-debian
libarchive-zip-perl libboost-chrono-dev libboost-chrono1.74-dev
libboost-chrono1.74.0 libboost-filesystem-dev libboost-filesystem1.74-dev
libboost-filesystem1.74.0 libboost-iostreams-dev libboost-iostreams1.74-dev
libboost-iostreams1.74.0 libboost-regex1.74-dev libboost-regex1.74.0
libboost-system-dev libboost-system1.74-dev libboost-system1.74.0
libboost1.74-dev libbrotli1 libc-ares2 libcurl3-gnutls libcurl4-gnutls-dev
libdebhelper-perl libdeflate-dev libdeflate0 libelf1 libexpat1 libffi8
libfile-stripnondeterminism-perl libhts-dev libhts3 libhtscodecs2 libicu-dev
libicu67 libjs-d3-format libjs-jquery libjs-jquery-datatables
libjs-jquery-datatables-extensions liblzma-dev libmagic-mgc libmagic1
libmpdec3 libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libnode72
libpipeline1 libpsl5 libpython3-stdlib libpython3.9-minimal
libpython3.9-stdlib librtmp1 libsigsegv2 libssh2-1 libsub-override-perl
libtool libuchardet0 libuv1 libxml2 m4 man-db media-types node-commander
node-d3 node-d3-array node-d3-axis node-d3-brush node-d3-chord
node-d3-collection node-d3-color node-d3-contour node-d3-dispatch
node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch node-d3-force
node-d3-format node-d3-geo node-d3-hierarchy node-d3-interpolate
node-d3-path node-d3-polygon node-d3-quadtree node-d3-queue node-d3-random
node-d3-scale node-d3-scale-chromatic node-d3-selection node-d3-shape
node-d3-time node-d3-time-format node-d3-timer node-d3-transition
node-d3-voronoi node-d3-zoom node-iconv-lite node-normalize.css node-rw
nodejs po-debconf python3 python3-minimal python3.9 python3.9-minimal
sbuild-build-depends-ataqv-dummy sensible-utils zlib1g-dev
0 upgraded, 124 newly installed, 0 to remove and 22 not upgraded.
Need to get 61.8 MB of archives.
After this operation, 351 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Kg6uw9/apt_archive ./ sbuild-build-depends-ataqv-dummy 0.invalid.0 [988 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf node-normalize.css all 8.0.1-3 [12.5 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.7-4+rpi1 [794 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.7-4+rpi1 [1632 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-2 [21.2 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.7-4+rpi1 [1618 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.7-4+rpi1 [480 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf help2man armhf 1.48.5 [143 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libboost-chrono1.74.0 armhf 1.74.0-9 [248 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libboost-chrono1.74-dev armhf 1.74.0-9 [254 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libboost-chrono-dev armhf 1.74.0.3+b1 [5232 B]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libboost-filesystem1.74.0 armhf 1.74.0-9 [274 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libboost-system1.74.0 armhf 1.74.0-9 [242 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libboost-system1.74-dev armhf 1.74.0-9 [243 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libboost-filesystem1.74-dev armhf 1.74.0-9 [285 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libboost-filesystem-dev armhf 1.74.0.3+b1 [4636 B]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libboost-regex1.74.0 armhf 1.74.0-9 [448 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libboost-regex1.74-dev armhf 1.74.0-9 [553 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libboost-iostreams1.74.0 armhf 1.74.0-9 [260 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libboost-iostreams1.74-dev armhf 1.74.0-9 [269 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libboost-iostreams-dev armhf 1.74.0.3+b1 [4588 B]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libboost-system-dev armhf 1.74.0.3+b1 [4744 B]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libc-ares2 armhf 1.17.2-1 [97.5 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.74.0-1.3 [301 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libcurl4-gnutls-dev armhf 7.74.0-1.3 [375 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.7-2 [44.1 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libdeflate-dev armhf 1.7-2 [40.5 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libhtscodecs2 armhf 1.1.1-3 [49.8 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf libhts3 armhf 1.13+ds-2 [339 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libhts-dev armhf 1.13+ds-2 [4049 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf libjs-d3-format all 1:1.4.1-4 [17.0 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery-datatables all 1.10.21+dfsg-3 [138 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-5 [648 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libncurses6 armhf 6.2+20201114-4 [79.7 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libncurses-dev armhf 6.2+20201114-4 [288 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.2+20201114-4 [940 B]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libuv1 armhf 1.42.0-1 [121 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libnode72 armhf 12.22.5~dfsg-5 [7262 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf nodejs armhf 12.22.5~dfsg-5 [147 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf node-commander all 6.2.1-2 [38.3 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf node-d3-array all 1.2.4-5 [19.4 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf node-d3-axis all 1.0.12-3 [10.1 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf node-d3-dispatch all 1.0.6-2 [7856 B]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf node-d3-selection all 1.4.0-6 [30.7 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf node-d3-drag all 1.2.5-2 [13.9 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf node-d3-color all 1.2.8-2 [15.0 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf node-d3-interpolate all 1.4.0-2 [18.5 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf node-d3-ease all 1.0.5-3 [9932 B]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf node-d3-timer all 1.0.10-1 [8608 B]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf node-d3-transition all 1.3.2-3 [22.2 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf node-d3-brush all 1.1.5-2 [181 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf node-d3-path all 1.0.9-2 [8212 B]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf node-d3-chord all 1.0.6-4 [10.1 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf node-d3-collection all 1.0.7-3 [11.7 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf node-d3-contour all 1.3.2-4 [13.6 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf node-iconv-lite all 0.5.1-3 [128 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf node-d3-queue all 3.0.7-11 [9828 B]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf node-rw all 1.3.3-4 [7296 B]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf node-d3-dsv all 1.1.1-5 [14.5 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf node-d3-fetch all 1.2.0-1 [7344 B]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf node-d3-quadtree all 1.0.7-2 [13.1 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf node-d3-force all 1.2.1-2 [368 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf node-d3-format all 1:1.4.1-4 [9072 B]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf node-d3-geo all 1.11.9-4 [53.6 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf node-d3-hierarchy all 1.1.8-3 [28.6 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf node-d3-polygon all 1.0.5-3 [7396 B]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf node-d3-random all 1.1.2-3 [7184 B]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf node-d3-time all 1.0.11-4 [14.6 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf node-d3-time-format all 2.1.3-3 [18.9 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf node-d3-scale all 2.2.2-3 [31.5 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf node-d3-scale-chromatic all 1.5.0-2 [18.5 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf node-d3-shape all 1.3.7-2 [40.4 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf node-d3-voronoi all 1.1.4-3 [17.1 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf node-d3-zoom all 1.8.3-2 [20.1 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf node-d3 all 5.16.0-4 [208 kB]
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.37.2-1 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 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libboost-system1.74.0_1.74.0-9 libboost1.74-dev_1.74.0-9 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libc-ares2_1.17.2-1 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-4+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libcurl3-gnutls_7.74.0-1.3 libcurl4-gnutls-dev_7.74.0-1.3 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdeflate-dev_1.7-2 libdeflate0_1.7-2 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libffi8_3.4.2-2 libfile-stripnondeterminism-perl_1.12.0-1 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-4+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-4+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhts-dev_1.13+ds-2 libhts3_1.13+ds-2 libhtscodecs2_1.1.1-3 libicu-dev_67.1-7 libicu67_67.1-7 libidn2-0_2.3.2-2 libisl23_0.23-1 libjs-d3-format_1:1.4.1-4 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-jquery-datatables_1.10.21+dfsg-3 libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-5 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma-dev_5.2.5-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncurses-dev_6.2+20201114-4 libncurses5-dev_6.2+20201114-4 libncurses6_6.2+20201114-4 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnode72_12.22.5~dfsg-5 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpsl5_0.21.0-1.2 libpython3-stdlib_3.9.2-3 libpython3.9-minimal_3.9.7-4+rpi1 libpython3.9-stdlib_3.9.7-4+rpi1 libreadline8_8.1-2 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssh2-1_1.10.0-2 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-4+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libuv1_1.42.0-1 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 node-commander_6.2.1-2 node-d3_5.16.0-4 node-d3-array_1.2.4-5 node-d3-axis_1.0.12-3 node-d3-brush_1.1.5-2 node-d3-chord_1.0.6-4 node-d3-collection_1.0.7-3 node-d3-color_1.2.8-2 node-d3-contour_1.3.2-4 node-d3-dispatch_1.0.6-2 node-d3-drag_1.2.5-2 node-d3-dsv_1.1.1-5 node-d3-ease_1.0.5-3 node-d3-fetch_1.2.0-1 node-d3-force_1.2.1-2 node-d3-format_1:1.4.1-4 node-d3-geo_1.11.9-4 node-d3-hierarchy_1.1.8-3 node-d3-interpolate_1.4.0-2 node-d3-path_1.0.9-2 node-d3-polygon_1.0.5-3 node-d3-quadtree_1.0.7-2 node-d3-queue_3.0.7-11 node-d3-random_1.1.2-3 node-d3-scale_2.2.2-3 node-d3-scale-chromatic_1.5.0-2 node-d3-selection_1.4.0-6 node-d3-shape_1.3.7-2 node-d3-time_1.0.11-4 node-d3-time-format_2.1.3-3 node-d3-timer_1.0.10-1 node-d3-transition_1.3.2-3 node-d3-voronoi_1.1.4-3 node-d3-zoom_1.8.3-2 node-iconv-lite_0.5.1-3 node-normalize.css_8.0.1-3 node-rw_1.3.3-4 nodejs_12.22.5~dfsg-5 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python3_3.9.2-3 python3-minimal_3.9.2-3 python3.9_3.9.7-4+rpi1 python3.9-minimal_3.9.7-4+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-ataqv-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.h35FQjTE/trustedkeys.kbx': General error
gpgv: Signature made Thu Oct 7 08:33:47 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ataqv_1.2.1+ds-2.dsc
dpkg-source: info: extracting ataqv in /<<BUILDDIR>>/ataqv-1.2.1+ds
dpkg-source: info: unpacking ataqv_1.2.1+ds.orig.tar.xz
dpkg-source: info: unpacking ataqv_1.2.1+ds-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying modernize
dpkg-source: info: applying no_cov
dpkg-source: info: applying python3
dpkg-source: info: applying packaged_js
dpkg-source: info: applying spelling
dpkg-source: info: applying clean_less
dpkg-source: info: applying reproducible_build
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-28ee02d3-3b81-42b2-a218-3f1da2a736ea
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package ataqv
dpkg-buildpackage: info: source version 1.2.1+ds-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
cp -sf /usr/share/nodejs/d3/dist/d3.min.js src/web/js/d3.min.js
cp -sf /usr/share/javascript/jquery-datatables-extensions/JSZip/jszip.min.js src/web/js/jszip.min.js
cp -sf /usr/share/javascript/jquery-datatables-extensions/Buttons/css/buttons.dataTables.min.css src/web/css/datatables.buttons.min.css
cp -sf /usr/share/javascript/jquery-datatables/css/jquery.dataTables.min.css src/web/css/datatables.min.css
cp -sf /usr/share/fonts-font-awesome/css/font-awesome.min.css src/web/css/font-awesome.min.css
cp -sf /usr/share/javascript/normalize.css/normalize.css src/web/css/normalize.css
cp -sf /usr/share/fonts-font-awesome/fonts/* src/web/fonts/
cp -s /usr/share/javascript/jquery/jquery.min.js \
/usr/share/javascript/jquery-datatables-extensions/pdfmake/build/pdfmake.min.js \
/usr/share/javascript/jquery-datatables/jquery.dataTables.min.js \
/usr/share/javascript/jquery-datatables-extensions/Buttons/js/dataTables.buttons.min.js \
/usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.colVis.min.js \
/usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.html5.min.js \
/usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.print.min.js \
/usr/share/javascript/jquery-datatables-extensions/Responsive/js/dataTables.responsive.min.js \
src/web/js/
rm -f src/web/js/datatables.min.js
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
dh_auto_build -- all testing/run_ataqv_tests
make -j4 "INSTALL=install --strip-program=true" all testing/run_ataqv_tests
make[2]: Entering directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o build/ataqv.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/ataqv.cpp
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o build/Features.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o build/HTS.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.cpp
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o build/IO.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/IO.cpp
In file included from /usr/include/c++/10/map:60,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >]’:
/usr/include/c++/10/bits/stl_tree.h:2460:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1
2460 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/10/bits/stl_map.h: In member function ‘ReferenceFeatureCollection* FeatureTree::get_reference_feature_collection(const string&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::pair<long long unsigned int, std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<std::__cxx11::basic_string<char> > FeatureTree::get_references_by_feature_count()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::__cxx11::basic_string<char> >*, std::vector<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator<Feature>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Feature>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void ReferenceFeatureCollection::add(const Feature&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/10/bits/stl_map.h: In member function ‘void FeatureTree::add(Feature&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o build/Metrics.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o build/Peaks.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1824:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1824 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1844 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
In file included from /usr/include/c++/10/map:60,
from /usr/include/boost/system/detail/std_interoperability.hpp:11,
from /usr/include/boost/system/error_code.hpp:963,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >]’:
/usr/include/c++/10/bits/stl_tree.h:2460:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1
2460 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /usr/include/boost/system/detail/std_interoperability.hpp:11,
from /usr/include/boost/system/error_code.hpp:963,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11:
/usr/include/c++/10/bits/stl_map.h: In member function ‘ReferencePeakCollection* PeakTree::get_reference_peaks(const string&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Peak&}; _Tp = Peak; _Alloc = std::allocator<Peak>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Peak>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/10/bits/stl_algo.h:1824:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1824 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1844 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1950 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1964:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1964 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1979 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1980 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1981 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1896 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o build/Utils.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.cpp
/usr/include/c++/10/bits/stl_algo.h: In member function ‘void ReferencePeakCollection::sort()’:
/usr/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1979 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1980 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1981 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1896 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void ReferencePeakCollection::add(const Peak&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /usr/include/boost/system/detail/std_interoperability.hpp:11,
from /usr/include/boost/system/error_code.hpp:963,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11:
/usr/include/c++/10/bits/stl_map.h: In member function ‘void PeakTree::add(Peak&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1950 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1964:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1964 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1671:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/run_ataqv_tests.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/run_ataqv_tests.cpp
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks_by_overlapping_hqaa_descending()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1979 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1980 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1981 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1896 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks_by_size_descending()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1979 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1980 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1981 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1896 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/test_features.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_features.cpp
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/test_hts.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_hts.cpp
In file included from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_features.cpp:1:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_features.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____167()’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_features.cpp:171:47: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=]
171 | REQUIRE_THROWS_AS(collection.add(f), std::out_of_range);
| ^~~~~~~~~~~~
In file included from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_hts.cpp:3:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_hts.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____169()’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_hts.cpp:200:57: warning: catching polymorphic type ‘class HTSException’ by value [-Wcatch-value=]
200 | REQUIRE_THROWS_AS(record_to_string(header, record), HTSException);
| ^~~~~~~~~~~~
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/catch.hpp:76,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_features.cpp:1:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >; _Distance = int; _Tp = Feature; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/catch.hpp:76,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_features.cpp:1:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1844 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/test_io.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_io.cpp
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__heap_select(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1667:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1667 | __heap_select(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1667:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1667:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1950 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1964:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1964 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1942:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1942 | std::__heap_select(__first, __middle, __last, __comp);
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void ____C_A_T_C_H____T_E_S_T____61()’:
/usr/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1979 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1980 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1981 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1896 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator<Feature>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Feature>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void MetricsCollector::load_excluded_regions()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long double&}; _Tp = long double; _Alloc = std::allocator<long double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/map:60,
from /usr/include/boost/system/detail/std_interoperability.hpp:11,
from /usr/include/boost/system/error_code.hpp:963,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:16:
/usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/include/c++/10/bits/stl_tree.h:2195:5: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
2195 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/test_metrics.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/test_peaks.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_peaks.cpp
In file included from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_peaks.cpp:1:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_peaks.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____172()’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_peaks.cpp:181:44: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=]
181 | REQUIRE_THROWS_AS(rpc.add(peak3), std::out_of_range);
| ^~~~~~~~~~~~
In file included from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.hpp:16,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:21:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/json.hpp: In constructor ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
2082 | basic_json(std::initializer_list<basic_json> init,
| ^~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/json.hpp: In function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp: In member function ‘nlohmann::json Library::to_json()’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
1341 | };
| ^
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
In file included from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:3:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____169()’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:172:56: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=]
172 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException);
| ^~~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:177:56: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=]
177 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException);
| ^~~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____242()’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:248:52: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=]
248 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException);
| ^~~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____251()’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:258:52: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=]
258 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException);
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Metrics::add_alignment(const bam_hdr_t*, const bam1_t*)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:881:1: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
881 | }
| ^
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/catch.hpp:569,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:3:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/catch.hpp:569,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_metrics.cpp:3:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/10/bits/stl_vector.h:1338:16: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1338 | _M_fill_insert(begin() + __offset, __n, __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/test_utils.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/test_utils.cpp
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘nlohmann::json Metrics::to_json()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
1531 | };
| ^
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/catch.hpp:569,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/run_ataqv_tests.cpp:2:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Catch::SectionEndInfo&}; _Tp = Catch::SectionEndInfo; _Alloc = std::allocator<Catch::SectionEndInfo>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Catch::SectionEndInfo>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/catch.hpp:569,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/run_ataqv_tests.cpp:2:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘virtual void Catch::RunContext::sectionEndedEarly(const Catch::SectionEndInfo&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Catch::SectionEndInfo*, std::vector<Catch::SectionEndInfo> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h: In destructor ‘Catch::Section::~Section()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Catch::SectionEndInfo*, std::vector<Catch::SectionEndInfo> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/vector.tcc: In member function ‘nlohmann::json MetricsCollector::to_json()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/Features.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/HTS.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.cpp
In file included from /usr/include/c++/10/map:60,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >]’:
/usr/include/c++/10/bits/stl_tree.h:2460:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1
2460 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/10/bits/stl_map.h: In member function ‘ReferenceFeatureCollection* FeatureTree::get_reference_feature_collection(const string&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::pair<long long unsigned int, std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector<std::__cxx11::basic_string<char> > FeatureTree::get_references_by_feature_count()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::__cxx11::basic_string<char> >*, std::vector<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator<Feature>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Feature>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/IO.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/IO.cpp
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void ReferenceFeatureCollection::add(const Feature&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/10/bits/stl_map.h: In member function ‘void FeatureTree::add(Feature&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/Metrics.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/Peaks.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1824:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1824 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1844 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
In file included from /usr/include/c++/10/map:60,
from /usr/include/boost/system/detail/std_interoperability.hpp:11,
from /usr/include/boost/system/error_code.hpp:963,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11:
/usr/include/c++/10/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >]’:
/usr/include/c++/10/bits/stl_tree.h:2460:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1
2460 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /usr/include/boost/system/detail/std_interoperability.hpp:11,
from /usr/include/boost/system/error_code.hpp:963,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11:
/usr/include/c++/10/bits/stl_map.h: In member function ‘ReferencePeakCollection* PeakTree::get_reference_peaks(const string&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Peak&}; _Tp = Peak; _Alloc = std::allocator<Peak>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Peak>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/10/bits/stl_algo.h:1824:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1824 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1844 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1844:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1950 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1964:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1964 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1979 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1980 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1981 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1896 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h: In member function ‘void ReferencePeakCollection::sort()’:
/usr/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1979 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1980 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1981 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1896 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void ReferencePeakCollection::add(const Peak&)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/map:61,
from /usr/include/boost/system/detail/std_interoperability.hpp:11,
from /usr/include/boost/system/error_code.hpp:963,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:11:
/usr/include/c++/10/bits/stl_map.h: In member function ‘void PeakTree::add(Peak&)’:
/usr/include/c++/10/bits/stl_map.h:501:37: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ changed in GCC 7.1
501 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
502 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
503 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/bits/stl_algo.h:61,
from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/Utils.o -c /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.cpp
/usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
339 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/10/bits/stl_heap.h:339:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1950 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1950:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/10/bits/stl_algo.h:1964:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1964 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1671:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks_by_overlapping_hqaa_descending()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1979 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1980 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1981 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1896 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o build/ataqv build/ataqv.o build/Features.o build/HTS.o build/IO.o build/Metrics.o build/Peaks.o build/Utils.o -Wl,-z,relro -Wl,-z,now -lboost_filesystem -lboost_iostreams -lboost_system -lboost_chrono -lhts -lz -lncurses -lpthread
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks_by_size_descending()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/10/bits/stl_algo.h:1979:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1979 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1980 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1981 | __comp);
| ~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1891:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1891 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/stl_algo.h:1896:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1896 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator<Feature>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Feature>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void MetricsCollector::load_excluded_regions()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long double&}; _Tp = long double; _Alloc = std::allocator<long double>]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long double>::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/map:60,
from /usr/include/boost/system/detail/std_interoperability.hpp:11,
from /usr/include/boost/system/error_code.hpp:963,
from /usr/include/boost/chrono/detail/system.hpp:11,
from /usr/include/boost/chrono/system_clocks.hpp:64,
from /usr/include/boost/chrono/chrono.hpp:13,
from /usr/include/boost/chrono/include.hpp:15,
from /usr/include/boost/chrono.hpp:17,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:16:
/usr/include/c++/10/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/include/c++/10/bits/stl_tree.h:2195:5: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ changed in GCC 7.1
2195 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.hpp:16,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:21:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/json.hpp: In constructor ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
2082 | basic_json(std::initializer_list<basic_json> init,
| ^~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/json.hpp: In function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp: In member function ‘nlohmann::json Library::to_json()’:
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
1341 | };
| ^
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1341:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/10/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘void Metrics::add_alignment(const bam_hdr_t*, const bam1_t*)’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:881:1: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ changed in GCC 7.1
881 | }
| ^
In file included from /usr/include/c++/10/vector:67,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/stl_vector.h: In member function ‘nlohmann::json Metrics::to_json()’:
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double> >’ changed in GCC 7.1
1198 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
1531 | };
| ^
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:1531:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
In file included from /usr/include/c++/10/vector:72,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/10/bits/vector.tcc: In member function ‘nlohmann::json MetricsCollector::to_json()’:
/usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<BUILDDIR>>/ataqv-1.2.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.2.1+ds/src/cpp -D LINUX -o testing/run_ataqv_tests testing/run_ataqv_tests.o testing/test_features.o testing/test_hts.o testing/test_io.o testing/test_metrics.o testing/test_peaks.o testing/test_utils.o testing/Features.o testing/HTS.o testing/IO.o testing/Metrics.o testing/Peaks.o testing/Utils.o -Wl,-z,relro -Wl,-z,now -lboost_filesystem -lboost_iostreams -lboost_system -lboost_chrono -lhts -lz -lncurses -lpthread
make[2]: Leaving directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
dh_auto_test -a
make -j4 test
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
[E::sam_format1_append] Corrupted aux data for read SRR891268.122333488
Reading human autosomal references from autosomal_references.gz.
Autosomal references for human:
I
II
III
Reading human autosomal references from autosomal_references.gz.
Autosomal references for human:
I
II
III
Reading human autosomal references from autosomal_references.gz.
Autosomal references for human:
I
II
III
Read 411 excluded regions from exclude.dac.bed.gz.
Read 1649 excluded regions from exclude.duke.bed.gz.
Loading TSS file 'hg19.tss.refseq.bed.gz'.
Excluding TSS [chr11 10530722 10530723 MTRNR2L8 0 -] which overlaps excluded region [chr11 10529403 10531969 Low_mappability_island 1000 .]
Excluding TSS [chr12 118573688 118573689 PEBP1 0 +] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .]
Excluding TSS [chr14 105196180 105196181 ADSSL1 0 +] which overlaps excluded region [chr14 105195912 105196275 TAR1 1000 .]
Excluding TSS [chr17 22022436 22022437 MTRNR2L1 0 +] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .]
Excluding TSS [chr20 55934877 55934878 MTRNR2L3 0 -] which overlaps excluded region [chr20 55932703 55936114 chrM 1000 .]
Excluding TSS [chr5 79946853 79946854 MTRNR2L2 0 -] which overlaps excluded region [chr5 79945807 79948223 Low_mappability_island 1000 .]
Excluding TSS [chr6 62284007 62284008 MTRNR2L9 0 +] which overlaps excluded region [chr6 62283966 62284581 Low_mappability_island 1000 .]
Excluding TSS [chr7 57207570 57207571 ZNF479 0 -] which overlaps excluded region [chr7 57205319 57210318 BSR/Beta 1000 .]
Excluding TSS [chr7 63688851 63688852 ZNF679 0 +] which overlaps excluded region [chr7 63686197 63693336 BSR/Beta 1000 .]
Excluding TSS [chr7 142374130 142374131 MTRNR2L6 0 +] which overlaps excluded region [chr7 142372972 142375638 Low_mappability_island 1000 .]
Excluding TSS [chrX 55208943 55208944 MTRNR2L10 0 -] which overlaps excluded region [chrX 55204685 55210460 chrM 1000 .]
Excluding TSS [chrY 25130409 25130410 BPY2B 0 +] which overlaps excluded region [chrY 25122419 25160800 BSR/Beta 1000 .]
Excluding TSS [chrY 26764150 26764151 BPY2B 0 +] which overlaps excluded region [chrY 26756160 26794538 BSR/Beta 1000 .]
Excluding TSS [chrY 27198250 27198251 BPY2B 0 -] which overlaps excluded region [chrY 27167859 27206241 BSR/Beta 1000 .]
chr1 feature count: 2687
chr2 feature count: 1715
chr3 feature count: 1490
chr4 feature count: 1004
chr5 feature count: 1132
chr6 feature count: 1368
chr7 feature count: 1169
chr8 feature count: 913
chr9 feature count: 1025
chr10 feature count: 1039
chr11 feature count: 1642
chr12 feature count: 1350
chr13 feature count: 433
chr14 feature count: 785
chr15 feature count: 812
chr16 feature count: 1106
chr17 feature count: 1528
chr18 feature count: 398
chr19 feature count: 1785
chr20 feature count: 694
chr21 feature count: 321
chr22 feature count: 593
Loaded 24989 TSS in 24.2002 seconds. (1032.59 TSS/second).
Collecting metrics from test.bam.
Logging problematic reads to SRR891275.problems.
Loading peaks for read group SRR891275 from test.peaks.gz.
Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000 .]
Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000 .]
Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000 .]
Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000 .]
Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000 .]
Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .]
Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .]
Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000 .]
Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .]
Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .]
Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000 .]
Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000 .]
Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000 .]
Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000 .]
Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000 .]
Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000 .]
Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .]
Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .]
Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .]
Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .]
Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000 .]
Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000 .]
Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000 .]
Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .]
Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .]
Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .]
Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000 .]
Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000 .]
Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000 .]
Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000 .]
Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000 .]
Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000 .]
Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .]
Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .]
Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000 .]
Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000 .]
Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .]
Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .]
Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000 .]
Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000 .]
Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000 .]
Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000 .]
Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000 .]
Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000 .]
Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000 .]
Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000 .]
Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000 .]
Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000 .]
Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .]
Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .]
Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000 .]
Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000 .]
Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000 .]
Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000 .]
Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000 .]
Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000 .]
Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000 .]
Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000 .]
Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000 .]
Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .]
Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .]
Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000 .]
Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000 .]
Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000 .]
Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000 .]
Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .]
Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .]
Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .]
Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .]
Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000 .]
Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000 .]
Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000 .]
Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000 .]
Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000 .]
Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .]
Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .]
Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .]
Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .]
Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000 .]
Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000 .]
Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .]
Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .]
Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000 .]
Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000 .]
Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .]
Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .]
Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000 .]
Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .]
Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .]
Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000 .]
Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000 .]
Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000 .]
Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000 .]
chr1 peak count: 3667
chr2 peak count: 3154
chr3 peak count: 2528
chr4 peak count: 1814
chr5 peak count: 2042
chr6 peak count: 2483
chr7 peak count: 1999
chr8 peak count: 1647
chr9 peak count: 1475
chr10 peak count: 1815
chr11 peak count: 1878
chr12 peak count: 2078
chr13 peak count: 1026
chr14 peak count: 1275
chr15 peak count: 1140
chr16 peak count: 1211
chr17 peak count: 1664
chr18 peak count: 772
chr19 peak count: 1595
chr20 peak count: 864
chr21 peak count: 487
chr22 peak count: 662
Loaded 37276 peaks in 156.388 seconds. (238.356 peaks/second).
Logging problematic reads to SRR891278.problems.
Loading peaks for read group SRR891278 from test.peaks.gz.
Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000 .]
Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000 .]
Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000 .]
Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000 .]
Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000 .]
Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .]
Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .]
Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000 .]
Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .]
Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .]
Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000 .]
Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000 .]
Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000 .]
Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000 .]
Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000 .]
Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000 .]
Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .]
Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .]
Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .]
Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .]
Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000 .]
Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000 .]
Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000 .]
Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .]
Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .]
Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .]
Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000 .]
Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000 .]
Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000 .]
Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000 .]
Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000 .]
Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000 .]
Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .]
Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .]
Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000 .]
Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000 .]
Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .]
Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .]
Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000 .]
Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000 .]
Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000 .]
Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000 .]
Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000 .]
Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000 .]
Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000 .]
Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000 .]
Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000 .]
Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000 .]
Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .]
Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .]
Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000 .]
Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000 .]
Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000 .]
Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000 .]
Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000 .]
Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000 .]
Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000 .]
Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000 .]
Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000 .]
Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .]
Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .]
Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000 .]
Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000 .]
Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000 .]
Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000 .]
Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .]
Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .]
Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .]
Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .]
Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000 .]
Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000 .]
Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000 .]
Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000 .]
Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000 .]
Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .]
Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .]
Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .]
Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .]
Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000 .]
Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000 .]
Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .]
Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .]
Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000 .]
Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000 .]
Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .]
Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .]
Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000 .]
Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .]
Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .]
Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000 .]
Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000 .]
Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000 .]
Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000 .]
chr1 peak count: 3667
chr2 peak count: 3154
chr3 peak count: 2528
chr4 peak count: 1814
chr5 peak count: 2042
chr6 peak count: 2483
chr7 peak count: 1999
chr8 peak count: 1647
chr9 peak count: 1475
chr10 peak count: 1815
chr11 peak count: 1878
chr12 peak count: 2078
chr13 peak count: 1026
chr14 peak count: 1275
chr15 peak count: 1140
chr16 peak count: 1211
chr17 peak count: 1664
chr18 peak count: 772
chr19 peak count: 1595
chr20 peak count: 864
chr21 peak count: 487
chr22 peak count: 662
Loaded 37276 peaks in 156.402 seconds. (238.335 peaks/second).
New maximum proper pair fragment length: 42 from [SRR891275.608 1123 chr1 569907 57 42M = 569907 42 CACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAA @@@FFFEFFDHFBHIJIEFHJIGGF:CFGEDF?FFHEG@FGG XA:Z:chrM,+9359,42M,1; MD:Z:42 NM:i:0 AS:i:42 XS:i:37 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 330 from [SRR891278.50 1123 chr1 569913 27 50M = 570193 330 NCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGC #1=DDFFFHHGHHJJJJIJJJGEGHIGGIIIJJJJIIFGGIJHIIJICHH XA:Z:chrM,+9365,50M,2; MD:Z:0C49 NM:i:1 AS:i:49 XS:i:44 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 53 from [SRR891275.421 1187 chr1 569924 15 50M = 569927 53 TGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACC CCCFFFFFGHHHHIGIJIJIEHIGIIIJJGIJJJJGGGJJJJJGIIJJFI XA:Z:chrM,+9376,50M,1; MD:Z:50 NM:i:0 AS:i:50 XS:i:47 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 67 from [SRR891275.1617 99 chr1 2059335 60 50M = 2059352 67 CACCTTAGCTCTGGACACGAATTTGCGGTCATTGCTGTTCTTGTGTCTCT ???DB?D8C:CD42C<EB))3ACDEAEAD6D><<*?DB<9?BBBD?9DD4 MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 112 from [SRR891275.176 99 chr1 2419720 60 50M = 2419782 112 ATCCCTGGGACTGTAGGTGGGAAGGGCATTGCAAGGCACAGGGGCGGGGA @BCFFDEDDHHHHHIJICGHI=GHIGIJJJJJIJIJIGHFHIJBHHDB87 MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 361 from [SRR891278.227 99 chr1 17047555 60 50M = 17047866 361 GACTCCCTCAAGGGCAGCTGAGAGGGAGGACTCAGGGCACTGGGGAAAGT @CCFFFFFHGHHHJGEHIIJGGJIIJDIIGGEHIIJJBFGGHGEHHIJFC XA:Z:chr1,+144886802,48M2S,2; MD:Z:50 NM:i:0 AS:i:50 XS:i:42 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 216 from [SRR891275.1770 163 chr1 18154381 60 50M = 18154547 216 CAACTGTTTTGCTTACTCTGACTAATACAGAGAAGGGAGCCACAATATAC C@CFFFDFGHHHHJJJJJJJJJJJJJIEIIHIJJJIGIJIJJJCHHIJJJ MD:Z:50 NM:i:0 AS:i:50 XS:i:21 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 562 from [SRR891275.385 163 chr1 43042844 60 50M = 43043356 562 AACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCTGATGCAGA CCCFFFFFHGGHGJJJJFIEHHHJJGIIJIIJJJJJIHGIJIJGIIJIII MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 609 from [SRR891275.714 99 chr1 79875808 60 50M = 79876367 609 GGCCCAGCCAAGTTGACACATAAAATAAACTTTCACAATATTGCAGGCAG @@@DDDFFFHAH<EFGGGG@EGECHIDHHAE<<*11?DB?9*?*:336?B MD:Z:50 NM:i:0 AS:i:50 XS:i:30 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 424 from [SRR891278.592 163 chr1 238449255 60 50M = 238449629 424 CCTGCAATTCTGAATAGGTCTGTGAATATACAGACTTTTTATTTGTACAT B@@BDDFFHGHGHJGEHDFHGHDHHJCEGIIGGEHIJGIGEHIIIIGEIH MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 633 from [SRR891278.342 99 chr2 4228733 60 50M = 4229316 633 CATTTAATGCAAACTAATCTAGCTATTATCATCTGGAGCTGCAGGCTATA CCCFFFFDHHGFHABDIGIIEGIIGCHCHIIIIIGHAEF):CCF;F;BDH MD:Z:50 NM:i:0 AS:i:50 XS:i:20 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 649 from [SRR891278.1592 99 chr2 55845390 60 50M = 55845989 649 GTGTGTTGACGATTTCCTGTTTCTTGCAGAGCGATTCACCGTTAAGGCTC ;1=+AB3BB<<?AC?EEAE+3A<B4CC93*:9C)?;DBD?68)?###### MD:Z:33C16 NM:i:1 AS:i:45 XS:i:0 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
Calculating TSS coverage...
Added TSS coverage for chr22; thread count=1
Added TSS coverage for chr21; thread count=1
Added TSS coverage for chr20; thread count=1
Added TSS coverage for chr19; thread count=1
Added TSS coverage for chr18; thread count=1
Added TSS coverage for chr17; thread count=1
Added TSS coverage for chr16; thread count=1
Added TSS coverage for chr15; thread count=1
Added TSS coverage for chr14; thread count=1
Added TSS coverage for chr13; thread count=1
Added TSS coverage for chr12; thread count=1
Added TSS coverage for chr11; thread count=1
Added TSS coverage for chr10; thread count=1
Added TSS coverage for chr9; thread count=1
Added TSS coverage for chr8; thread count=1
Added TSS coverage for chr7; thread count=1
Added TSS coverage for chr6; thread count=1
Added TSS coverage for chr5; thread count=1
Added TSS coverage for chr4; thread count=1
Added TSS coverage for chr3; thread count=1
Added TSS coverage for chr2; thread count=1
Added TSS coverage for chr1; thread count=1
All TSS jobs started. Waiting for last ones to complete.
Calculated TSS coverage in 1.16982 seconds.
Calculating TSS metrics...
Calculated TSS metrics in 0.00197105 seconds.
Calculating TSS metrics...
Calculated TSS metrics in 0.00195205 seconds.
Analyzed 1040 reads in 1.89635 seconds (548.423 reads/second).
ataqv 1.2.1
Operating parameters
====================
Thread limit: 1
Ignoring read groups: no
TSS extension: 1000
Experiment information
======================
Organism: human
Description: a collector for unit tests
URL: https://theparkerlab.org
Reference genome configuration
==============================
Mitochondrial reference: chrM
Autosomal references:
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
20, 21, 22, chr1, chr2, chr3, chr4, chr5, chr6, chr7, chr8, chr9,
chr10, chr11, chr12, chr13, chr14, chr15, chr16, chr17, chr18,
chr19, chr20, chr21, chr22
Read Group
==========
ID: SRR891275
Library: SRR891275
Sample: GSM1155964
Description: a library of brutal tests?
Sequencing center:
Sequencing date:
Sequencing platform: ILLUMINA
Platform model:
Platform unit:
Flow order:
Key sequence:
Predicted median insert size:
Programs:
Metrics
-------
Read Mapping Metrics
--------------------
Total reads: 520
Total problems: 104 (20.000%)
Properly paired and mapped reads: 416 (80.000%)
Secondary reads: 10 (1.923%)
Supplementary reads: 0 (0.000%)
Duplicate reads: 155 (29.808% of all reads)
Quality Indicators
------------------
Short to mononucleosomal ratio: 1.281
High quality, nonduplicate, properly paired, uniquely mapped autosomal alignments: 200
as a percentage of autosomal reads: 91.324%
as a percentage of all reads: 38.462%
TSS enrichment: 6.000
Paired Read Metrics
-------------------
Paired reads: 520 (100.000%)
Paired and mapped reads: 424 (81.538%)
FR reads: 416 (80.000000%)
First of pair: 260 (50.000%)
Second of pair: 260 (50.000%)
Forward reads: 268 (51.538%)
Reverse reads: 252 (48.462%)
Forward mate reads: 261 (50.192%)
Reverse mate reads: 259 (49.808%)
Unmapped Read Metrics
---------------------
Unmapped reads: 9 (1.731%)
Unmapped mate reads: 2 (0.385%)
Reads not passing quality controls: 0 (0.000%)
Unpaired reads: 0 (0.000%)
Reads with zero mapping quality: 62 (11.923%)
Aberrant Mapping Metrics
------------------------
RF reads: 9 (1.730769%)
FF reads: 6 (1.153846%)
RR reads: 8 (1.538462%)
Reads that paired and mapped but...
on different chromosomes: 6 (1.154%)
probably too far from their mates: 2 (0.385%) (longest proper fragment seems to be 609)
just not properly: 0 (0.000%)
Autosomal/Mitochondrial Metrics
-------------------------------
Total autosomal reads: 219 (42.115% of all reads)
Total mitochondrial reads: 177 (34.038% of all reads)
Duplicate autosomal reads: 18 (8.219% of all autosomal reads)
Duplicate mitochondrial reads: 93 (52.542% of all mitochondrial reads)
Mapping Quality
---------------
Mean MAPQ: 47.033
Median MAPQ: 60.000
Reads with MAPQ >=...
5: 439 (84.423%)
10: 439 (84.423%)
15: 438 (84.231%)
20: 436 (83.846%)
25: 435 (83.654%)
30: 420 (80.769%)
Peak Metrics
------------
Peak count: 37276
High quality autosomal alignments that overlapped peaks: 23 (11.500% of all high quality autosomal alignments)
Number of high quality autosomal alignments overlapping the top 10,000 peaks:
Top peak: 2 (1.000% of all high quality autosomal alignments)
Top 10 peaks: 20 (10.000% of all high quality autosomal alignments)
Top 100 peaks: 23 (11.500% of all high quality autosomal alignments)
Top 1000 peaks: 23 (11.500% of all high quality autosomal alignments)
Top 10,000 peaks: 23 (11.500% of all high quality autosomal alignments)
Read Group
==========
ID: SRR891278
Library: SRR891278
Sample: GSM1155967
Description: a library of brutal tests?
Sequencing center:
Sequencing date:
Sequencing platform: ILLUMINA
Platform model:
Platform unit:
Flow order:
Key sequence:
Predicted median insert size:
Programs:
Metrics
-------
Read Mapping Metrics
--------------------
Total reads: 520
Total problems: 90 (17.308%)
Properly paired and mapped reads: 430 (82.692%)
Secondary reads: 10 (1.923%)
Supplementary reads: 0 (0.000%)
Duplicate reads: 158 (30.385% of all reads)
Quality Indicators
------------------
Short to mononucleosomal ratio: 2.357
High quality, nonduplicate, properly paired, uniquely mapped autosomal alignments: 200
as a percentage of autosomal reads: 91.743%
as a percentage of all reads: 38.462%
TSS enrichment: 3.687
Paired Read Metrics
-------------------
Paired reads: 520 (100.000%)
Paired and mapped reads: 440 (84.615%)
FR reads: 430 (82.692308%)
First of pair: 259 (49.808%)
Second of pair: 261 (50.192%)
Forward reads: 261 (50.192%)
Reverse reads: 259 (49.808%)
Forward mate reads: 260 (50.000%)
Reverse mate reads: 260 (50.000%)
Unmapped Read Metrics
---------------------
Unmapped reads: 8 (1.538%)
Unmapped mate reads: 4 (0.769%)
Reads not passing quality controls: 0 (0.000%)
Unpaired reads: 0 (0.000%)
Reads with zero mapping quality: 49 (9.423%)
Aberrant Mapping Metrics
------------------------
RF reads: 6 (1.153846%)
FF reads: 4 (0.769231%)
RR reads: 9 (1.730769%)
Reads that paired and mapped but...
on different chromosomes: 8 (1.538%)
probably too far from their mates: 2 (0.385%) (longest proper fragment seems to be 649)
just not properly: 0 (0.000%)
Autosomal/Mitochondrial Metrics
-------------------------------
Total autosomal reads: 218 (41.923% of all reads)
Total mitochondrial reads: 192 (36.923% of all reads)
Duplicate autosomal reads: 17 (7.798% of all autosomal reads)
Duplicate mitochondrial reads: 92 (47.917% of all mitochondrial reads)
Mapping Quality
---------------
Mean MAPQ: 48.044
Median MAPQ: 60.000
Reads with MAPQ >=...
5: 449 (86.346%)
10: 445 (85.577%)
15: 443 (85.192%)
20: 442 (85.000%)
25: 442 (85.000%)
30: 417 (80.192%)
Peak Metrics
------------
Peak count: 37276
High quality autosomal alignments that overlapped peaks: 92 (46.000% of all high quality autosomal alignments)
Number of high quality autosomal alignments overlapping the top 10,000 peaks:
Top peak: 2 (1.000% of all high quality autosomal alignments)
Top 10 peaks: 20 (10.000% of all high quality autosomal alignments)
Top 100 peaks: 92 (46.000% of all high quality autosomal alignments)
Top 1000 peaks: 92 (46.000% of all high quality autosomal alignments)
Top 10,000 peaks: 92 (46.000% of all high quality autosomal alignments)
[E::hts_open_format] Failed to open file "missing_alignment_file.bam" : No such file or directory
Read 411 excluded regions from exclude.dac.bed.gz.
Read 1649 excluded regions from exclude.duke.bed.gz.
Collecting metrics from test.bam.
Logging problematic reads to Test collector.problems.
Loading peaks for read group Test collector from test.peaks.gz.
Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000.000 .]
Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000.000 .]
Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000.000 .]
Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .]
Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .]
Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .]
Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000.000 .]
Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000.000 .]
Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000.000 .]
Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000.000 .]
Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000.000 .]
Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000.000 .]
Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000.000 .]
Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000.000 .]
Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000.000 .]
Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000.000 .]
Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .]
Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .]
Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .]
Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000.000 .]
Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000.000 .]
Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000.000 .]
Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000.000 .]
Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000.000 .]
Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000.000 .]
Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000.000 .]
Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000.000 .]
Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000.000 .]
Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000.000 .]
Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000.000 .]
Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000.000 .]
Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .]
Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .]
Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .]
Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .]
Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .]
Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .]
Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .]
Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .]
Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000.000 .]
Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000.000 .]
Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000.000 .]
Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000.000 .]
Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000.000 .]
Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000.000 .]
Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000.000 .]
Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000.000 .]
Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000.000 .]
Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000.000 .]
Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000.000 .]
Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000.000 .]
Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000.000 .]
Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000.000 .]
Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000.000 .]
Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .]
Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .]
Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .]
Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .]
Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000.000 .]
Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000.000 .]
Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .]
Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .]
Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .]
Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000.000 .]
Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000.000 .]
Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000.000 .]
Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000.000 .]
Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000.000 .]
Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000.000 .]
Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000.000 .]
Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .]
Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .]
Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .]
Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .]
Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .]
Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000.000 .]
Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000.000 .]
Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000.000 .]
Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000.000 .]
Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000.000 .]
Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000.000 .]
Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000.000 .]
Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000.000 .]
Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .]
Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .]
Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .]
Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000.000 .]
Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000.000 .]
Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000.000 .]
Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000.000 .]
Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000.000 .]
Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .]
Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .]
Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .]
Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .]
Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000.000 .]
Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000.000 .]
Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000.000 .]
Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000.000 .]
Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000.000 .]
Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000.000 .]
Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000.000 .]
Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000.000 .]
Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000.000 .]
Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000.000 .]
Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000.000 .]
Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000.000 .]
Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000.000 .]
Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000.000 .]
Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000.000 .]
Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000.000 .]
Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000.000 .]
Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000.000 .]
Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000.000 .]
Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000.000 .]
Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000.000 .]
Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .]
Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .]
Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .]
Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .]
Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000.000 .]
Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000.000 .]
Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000.000 .]
Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000.000 .]
Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000.000 .]
Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000.000 .]
Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000.000 .]
Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000.000 .]
Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000.000 .]
Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000.000 .]
Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000.000 .]
Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000.000 .]
Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000.000 .]
chr1 peak count: 3667
chr2 peak count: 3154
chr3 peak count: 2528
chr4 peak count: 1814
chr5 peak count: 2042
chr6 peak count: 2483
chr7 peak count: 1999
chr8 peak count: 1647
chr9 peak count: 1475
chr10 peak count: 1815
chr11 peak count: 1878
chr12 peak count: 2078
chr13 peak count: 1026
chr14 peak count: 1275
chr15 peak count: 1140
chr16 peak count: 1211
chr17 peak count: 1664
chr18 peak count: 772
chr19 peak count: 1595
chr20 peak count: 864
chr21 peak count: 487
chr22 peak count: 662
Loaded 37276 peaks in 156.517 seconds. (238.159 peaks/second).
New maximum proper pair fragment length: 42 from [SRR891275.608 1123 chr1 569907 57 42M = 569907 42 CACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAA @@@FFFEFFDHFBHIJIEFHJIGGF:CFGEDF?FFHEG@FGG XA:Z:chrM,+9359,42M,1; MD:Z:42 NM:i:0 AS:i:42 XS:i:37 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 330 from [SRR891278.50 1123 chr1 569913 27 50M = 570193 330 NCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGC #1=DDFFFHHGHHJJJJIJJJGEGHIGGIIIJJJJIIFGGIJHIIJICHH XA:Z:chrM,+9365,50M,2; MD:Z:0C49 NM:i:1 AS:i:49 XS:i:44 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 361 from [SRR891278.227 99 chr1 17047555 60 50M = 17047866 361 GACTCCCTCAAGGGCAGCTGAGAGGGAGGACTCAGGGCACTGGGGAAAGT @CCFFFFFHGHHHJGEHIIJGGJIIJDIIGGEHIIJJBFGGHGEHHIJFC XA:Z:chr1,+144886802,48M2S,2; MD:Z:50 NM:i:0 AS:i:50 XS:i:42 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 562 from [SRR891275.385 163 chr1 43042844 60 50M = 43043356 562 AACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCTGATGCAGA CCCFFFFFHGGHGJJJJFIEHHHJJGIIJIIJJJJJIHGIJIJGIIJIII MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 609 from [SRR891275.714 99 chr1 79875808 60 50M = 79876367 609 GGCCCAGCCAAGTTGACACATAAAATAAACTTTCACAATATTGCAGGCAG @@@DDDFFFHAH<EFGGGG@EGECHIDHHAE<<*11?DB?9*?*:336?B MD:Z:50 NM:i:0 AS:i:50 XS:i:30 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 633 from [SRR891278.342 99 chr2 4228733 60 50M = 4229316 633 CATTTAATGCAAACTAATCTAGCTATTATCATCTGGAGCTGCAGGCTATA CCCFFFFDHHGFHABDIGIIEGIIGCHCHIIIIIGHAEF):CCF;F;BDH MD:Z:50 NM:i:0 AS:i:50 XS:i:20 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 649 from [SRR891278.1592 99 chr2 55845390 60 50M = 55845989 649 GTGTGTTGACGATTTCCTGTTTCTTGCAGAGCGATTCACCGTTAAGGCTC ;1=+AB3BB<<?AC?EEAE+3A<B4CC93*:9C)?;DBD?68)?###### MD:Z:33C16 NM:i:1 AS:i:45 XS:i:0 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
Analyzed 1040 reads in 0.341 seconds (3051.829 reads/second).
ataqv 1.2.1
Operating parameters
====================
Thread limit: 1
Ignoring read groups: yes
Experiment information
======================
Organism: human
Description: a collector for unit tests
URL: https://theparkerlab.org
Reference genome configuration
==============================
Mitochondrial reference: chrM
Autosomal references:
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
20, 21, 22, chr1, chr2, chr3, chr4, chr5, chr6, chr7, chr8, chr9,
chr10, chr11, chr12, chr13, chr14, chr15, chr16, chr17, chr18,
chr19, chr20, chr21, chr22
Read Group
==========
ID: Test collector
Library: Test collector
Sample: Test collector
Description: a library of brutal tests?
Sequencing center:
Sequencing date:
Sequencing platform:
Platform model:
Platform unit:
Flow order:
Key sequence:
Predicted median insert size:
Programs:
Metrics
-------
Read Mapping Metrics
--------------------
Total reads: 1040
Total problems: 194 (18.654%)
Properly paired and mapped reads: 846 (81.346%)
Secondary reads: 20 (1.923%)
Supplementary reads: 0 (0.000%)
Duplicate reads: 313 (30.096% of all reads)
Quality Indicators
------------------
Short to mononucleosomal ratio: 1.783
High quality, nonduplicate, properly paired, uniquely mapped autosomal alignments: 400
as a percentage of autosomal reads: 91.533%
as a percentage of all reads: 38.462%
Paired Read Metrics
-------------------
Paired reads: 1040 (100.000%)
Paired and mapped reads: 864 (83.077%)
FR reads: 846 (81.346154%)
First of pair: 519 (49.904%)
Second of pair: 521 (50.096%)
Forward reads: 529 (50.865%)
Reverse reads: 511 (49.135%)
Forward mate reads: 521 (50.096%)
Reverse mate reads: 519 (49.904%)
Unmapped Read Metrics
---------------------
Unmapped reads: 17 (1.635%)
Unmapped mate reads: 6 (0.577%)
Reads not passing quality controls: 0 (0.000%)
Unpaired reads: 0 (0.000%)
Reads with zero mapping quality: 111 (10.673%)
Aberrant Mapping Metrics
------------------------
RF reads: 15 (1.442308%)
FF reads: 10 (0.961538%)
RR reads: 17 (1.634615%)
Reads that paired and mapped but...
on different chromosomes: 14 (1.346%)
probably too far from their mates: 4 (0.385%) (longest proper fragment seems to be 649)
just not properly: 0 (0.000%)
Autosomal/Mitochondrial Metrics
-------------------------------
Total autosomal reads: 437 (42.019% of all reads)
Total mitochondrial reads: 369 (35.481% of all reads)
Duplicate autosomal reads: 35 (8.009% of all autosomal reads)
Duplicate mitochondrial reads: 185 (50.136% of all mitochondrial reads)
Mapping Quality
---------------
Mean MAPQ: 47.538
Median MAPQ: 60.000
Reads with MAPQ >=...
5: 888 (85.385%)
10: 884 (85.000%)
15: 881 (84.712%)
20: 878 (84.423%)
25: 877 (84.327%)
30: 837 (80.481%)
Peak Metrics
------------
Peak count: 37276
High quality autosomal alignments that overlapped peaks: 115 (28.750% of all high quality autosomal alignments)
Number of high quality autosomal alignments overlapping the top 10,000 peaks:
Top peak: 2 (0.500% of all high quality autosomal alignments)
Top 10 peaks: 20 (5.000% of all high quality autosomal alignments)
Top 100 peaks: 115 (28.750% of all high quality autosomal alignments)
Top 1000 peaks: 115 (28.750% of all high quality autosomal alignments)
Top 10,000 peaks: 115 (28.750% of all high quality autosomal alignments)
Read 411 excluded regions from exclude.dac.bed.gz.
Read 1649 excluded regions from exclude.duke.bed.gz.
Collecting metrics from test.bam.
Logging problematic reads to Test collector.problems.
Loading peaks for read group Test collector from notthere.peaks.gz.
Read 411 excluded regions from exclude.dac.bed.gz.
Read 1649 excluded regions from exclude.duke.bed.gz.
Loading TSS file 'notthere.bed.gz'.
===============================================================================
All tests passed (241 assertions in 54 test cases)
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
create-stamp debian/debhelper-build-stamp
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
dh_auto_install -- prefix=/usr
make -j4 install DESTDIR=/<<BUILDDIR>>/ataqv-1.2.1\+ds/debian/ataqv AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr
make[2]: Entering directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
Installing to /usr
install -d -m 0755 /<<BUILDDIR>>/ataqv-1.2.1+ds/debian/ataqv/usr/bin
install -d -m 0755 /<<BUILDDIR>>/ataqv-1.2.1+ds/debian/ataqv/usr/bin
install -d -m 0755 /<<BUILDDIR>>/ataqv-1.2.1+ds/debian/ataqv/usr/share/ataqv/web
install -m 0755 build/ataqv /<<BUILDDIR>>/ataqv-1.2.1+ds/debian/ataqv/usr/bin
for f in src/scripts/make_ataqv_pipeline src/scripts/mkarv src/scripts/run_ataqv_example src/scripts/srvarv; do sed -e 's/{{VERSION}}/1.2.1/g' $f > build/$(basename $f); install -m 0755 build/$(basename $f) /<<BUILDDIR>>/ataqv-1.2.1+ds/debian/ataqv/usr/bin; done
cp -a src/web/* /<<BUILDDIR>>/ataqv-1.2.1+ds/debian/ataqv/usr/share/ataqv/web
find /<<BUILDDIR>>/ataqv-1.2.1+ds/debian/ataqv/usr/share/ataqv/web -type d -exec chmod 755 {} \;
find /<<BUILDDIR>>/ataqv-1.2.1+ds/debian/ataqv/usr/share/ataqv/web -type f -exec chmod 644 {} \;
make[2]: Leaving directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
help2man --no-info --name="QC metrics for ATAC-seq data" build/ataqv > debian/ataqv.1
help2man --no-info --name="Turns ataqv results into a web app" src/scripts/mkarv > debian/mkarv.1
help2man --no-info --name="serve an instance of the ataqv web results viewer" --version-string 1.2.1+ds src/scripts/srvarv > debian/srvarv.1
dh_installman
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.2.1+ds'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/ataqv/usr/lib/ataqv/run_ataqv_tests contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ataqv/usr/bin/ataqv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'ataqv-dbgsym' in '../ataqv-dbgsym_1.2.1+ds-2_armhf.deb'.
dpkg-deb: building package 'ataqv' in '../ataqv_1.2.1+ds-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../ataqv_1.2.1+ds-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-09T06:47:03Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
ataqv_1.2.1+ds-2_armhf.changes:
-------------------------------
Format: 1.8
Date: Thu, 07 Oct 2021 10:23:21 +0200
Source: ataqv
Binary: ataqv ataqv-dbgsym
Architecture: armhf
Version: 1.2.1+ds-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
ataqv - ATAC-seq QC and visualization
Changes:
ataqv (1.2.1+ds-2) unstable; urgency=medium
.
* Team upload.
* Fix watchfile to detect new versions on github
* Standards-Version: 4.6.0 (routine-update)
Checksums-Sha1:
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d1468c1a6953d579b39529be61f2fd550071dde0 8244 ataqv_1.2.1+ds-2_armhf.buildinfo
742999b42799d3716a46d3554a4697f5e861dddc 3317724 ataqv_1.2.1+ds-2_armhf.deb
Checksums-Sha256:
166cd6dfb01ac10495c29d72a5e7e348d1bf613530925c9882b3d4966fd9abf2 7755076 ataqv-dbgsym_1.2.1+ds-2_armhf.deb
7ffd6caf2ed238e16241b73d9ddd5a9ed1b4b3f10d0f54697c253d4f37b01c9a 8244 ataqv_1.2.1+ds-2_armhf.buildinfo
8b3ca24e603b054a205c669b01bbb1e84d0ebfdab6cbc2fc7455a62e6e2e9f4b 3317724 ataqv_1.2.1+ds-2_armhf.deb
Files:
b25fe4cbe4590593ddf3cbbda74b1b1e 7755076 debug optional ataqv-dbgsym_1.2.1+ds-2_armhf.deb
6a55f715c7a9cbb6f3b45a4382de282d 8244 science optional ataqv_1.2.1+ds-2_armhf.buildinfo
6e1aa170c26f7f7351d52fbd8c8be80c 3317724 science optional ataqv_1.2.1+ds-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
ataqv-dbgsym_1.2.1+ds-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 7755076 bytes: control archive=644 bytes.
410 bytes, 12 lines control
297 bytes, 3 lines md5sums
Package: ataqv-dbgsym
Source: ataqv
Version: 1.2.1+ds-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 8158
Depends: ataqv (= 1.2.1+ds-2)
Section: debug
Priority: optional
Description: debug symbols for ataqv
Build-Ids: 0655435b70c668f78320b990f80946347ba64df4 8265da9a156368298d3f2f4962a81a87097f04b1
drwxr-xr-x root/root 0 2021-10-07 08:23 ./
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/.build-id/06/
-rw-r--r-- root/root 5553156 2021-10-07 08:23 ./usr/lib/debug/.build-id/06/55435b70c668f78320b990f80946347ba64df4.debug
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/.build-id/82/
-rw-r--r-- root/root 2098256 2021-10-07 08:23 ./usr/lib/debug/.build-id/82/65da9a156368298d3f2f4962a81a87097f04b1.debug
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 686296 2021-10-07 08:23 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ataqv.debug
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/share/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/doc/ataqv-dbgsym -> ataqv
ataqv_1.2.1+ds-2_armhf.deb
--------------------------
new Debian package, version 2.0.
size 3317724 bytes: control archive=1772 bytes.
963 bytes, 16 lines control
2422 bytes, 32 lines md5sums
Package: ataqv
Version: 1.2.1+ds-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 6205
Depends: libboost-chrono1.74.0 (>= 1.74.0), libboost-filesystem1.74.0 (>= 1.74.0), libboost-iostreams1.74.0 (>= 1.74.0), libc6 (>= 2.4), libgcc-s1 (>= 3.5), libhts3 (>= 1.10), libncurses6 (>= 6), libstdc++6 (>= 9), libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, python3, node-d3
Suggests: picard-tools, samtools, macs, wget
Section: science
Priority: optional
Homepage: https://github.com/ParkerLab/ataqv/
Description: ATAC-seq QC and visualization
A toolkit for measuring and comparing ATAC-seq results, made in the
Parker lab at the University of Michigan. They wrote it to help
understand how well their ATAC-seq assays had worked, and to make it
easier to spot differences that might be caused by library prep or
sequencing.
drwxr-xr-x root/root 0 2021-10-07 08:23 ./
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/bin/
-rwxr-xr-x root/root 419772 2021-10-07 08:23 ./usr/bin/ataqv
-rwxr-xr-x root/root 3020 2021-10-07 08:23 ./usr/bin/make_ataqv_pipeline
-rwxr-xr-x root/root 36049 2021-10-07 08:23 ./usr/bin/mkarv
-rwxr-xr-x root/root 1634 2021-10-07 08:23 ./usr/bin/run_ataqv_example
-rwxr-xr-x root/root 1142 2021-10-07 08:23 ./usr/bin/srvarv
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/lib/ataqv/
-rwxr-xr-x root/root 960196 2021-10-07 08:23 ./usr/lib/ataqv/run_ataqv_tests
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/share/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/share/ataqv/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/css/
-rw-r--r-- root/root 18865 2020-07-08 15:43 ./usr/share/ataqv/web/css/ataqv.css
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/css/datatables.buttons.min.css -> ../../../javascript/jquery-datatables-extensions/Buttons/css/buttons.dataTables.min.css
-rw-r--r-- root/root 3362 2020-07-08 15:43 ./usr/share/ataqv/web/css/datatables.fontawesome.css
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/css/datatables.min.css -> ../../../javascript/jquery-datatables/css/jquery.dataTables.min.css
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/css/font-awesome.min.css -> ../../../fonts-font-awesome/css/font-awesome.min.css
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/css/normalize.css -> ../../../javascript/normalize.css/normalize.css
drwxr-xr-x root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/fonts/
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/fonts/FontAwesome.otf -> ../../../fonts-font-awesome/fonts/FontAwesome.otf
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/fonts/fontawesome-webfont.eot -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.eot
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/fonts/fontawesome-webfont.svg -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.svg
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/fonts/fontawesome-webfont.ttf -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.ttf
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/fonts/fontawesome-webfont.woff -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.woff
lrwxrwxrwx root/root 0 2021-10-07 08:23 ./usr/share/ataqv/web/fonts/fontawesome-webfont.woff2 -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.woff2
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+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 127236
Build-Time: 1111
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 507
Job: ataqv_1.2.1+ds-2
Machine Architecture: armhf
Package: ataqv
Package-Time: 1666
Source-Version: 1.2.1+ds-2
Space: 127236
Status: successful
Version: 1.2.1+ds-2
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Finished at 2021-10-09T06:47:03Z
Build needed 00:27:46, 127236k disc space