ataqv →
1.1.1+ds-2 →
armhf → 2020-04-06 09:21:56
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| ataqv 1.1.1+ds-2 (armhf) Mon, 06 Apr 2020 08:40:30 +0000 |
+==============================================================================+
Package: ataqv
Version: 1.1.1+ds-2
Source Version: 1.1.1+ds-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-7a457e4d-b57f-4759-b0ca-18a1ebf72d09' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.6 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.4 MB in 28s (880 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ataqv' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/ataqv.git
Please use:
git clone https://salsa.debian.org/med-team/ataqv.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 4077 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main ataqv 1.1.1+ds-2 (dsc) [2252 B]
Get:2 http://172.17.0.1/private bullseye-staging/main ataqv 1.1.1+ds-2 (tar) [4067 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main ataqv 1.1.1+ds-2 (diff) [8508 B]
Fetched 4077 kB in 1s (2730 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/ataqv-6wh3LC/ataqv-1.1.1+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ataqv-6wh3LC' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Fkv79X/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Fkv79X/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Fkv79X/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2858 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12225 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), libboost-filesystem-dev, libboost-iostreams-dev, libboost-system-dev, libboost-chrono-dev, libhts-dev, libncurses5-dev, libtinfo-dev, zlib1g-dev, libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, help2man, python3, node-d3
Filtered Build-Depends: debhelper-compat (= 12), libboost-filesystem-dev, libboost-iostreams-dev, libboost-system-dev, libboost-chrono-dev, libhts-dev, libncurses5-dev, libtinfo-dev, zlib1g-dev, libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, help2man, python3, node-d3
dpkg-deb: building package 'sbuild-build-depends-ataqv-dummy' in '/<<BUILDDIR>>/resolver-Fkv79X/apt_archive/sbuild-build-depends-ataqv-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-ataqv-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ Sources [615 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ Packages [697 B]
Fetched 2645 B in 1s (3529 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install ataqv build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fonts-font-awesome gettext
gettext-base groff-base help2man icu-devtools intltool-debian
libarchive-zip-perl libboost-chrono-dev libboost-chrono1.67-dev
libboost-chrono1.67.0 libboost-filesystem-dev libboost-filesystem1.67-dev
libboost-filesystem1.67.0 libboost-iostreams-dev libboost-iostreams1.67-dev
libboost-iostreams1.67.0 libboost-regex1.67-dev libboost-regex1.67.0
libboost-system-dev libboost-system1.67-dev libboost-system1.67.0
libboost1.67-dev libbrotli1 libbsd0 libc-ares2 libcroco3 libcurl3-gnutls
libdebhelper-perl libdeflate0 libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev
libhts3 libicu-dev libicu63 libjs-d3-format libjs-jquery
libjs-jquery-datatables libjs-jquery-datatables-extensions libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblzma-dev libmagic-mgc libmagic1
libmpdec2 libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libnode64
libpipeline1 libpsl5 libpython3-stdlib libpython3.8-minimal
libpython3.8-stdlib librtmp1 libsigsegv2 libssh2-1 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libuv1 libxml2 m4 man-db
mime-support node-commander node-d3 node-d3-array node-d3-axis node-d3-brush
node-d3-chord node-d3-collection node-d3-color node-d3-contour
node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch
node-d3-force node-d3-format node-d3-geo node-d3-hierarchy
node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree
node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection
node-d3-shape node-d3-time node-d3-time-format node-d3-timer
node-d3-transition node-d3-voronoi node-d3-zoom node-iconv
node-normalize.css node-rw nodejs po-debconf python3 python3-minimal
python3.8 python3.8-minimal sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libboost1.67-doc libboost-atomic1.67-dev libboost-container1.67-dev
libboost-context1.67-dev libboost-contract1.67-dev
libboost-coroutine1.67-dev libboost-date-time1.67-dev
libboost-exception1.67-dev libboost-fiber1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-locale1.67-dev libboost-log1.67-dev
libboost-math1.67-dev libboost-mpi1.67-dev libboost-mpi-python1.67-dev
libboost-numpy1.67-dev libboost-program-options1.67-dev
libboost-python1.67-dev libboost-random1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-test1.67-dev libboost-thread1.67-dev
libboost-timer1.67-dev libboost-type-erasure1.67-dev libboost-wave1.67-dev
libboost1.67-tools-dev libmpfrc++-dev libntl-dev krb5-doc krb5-user icu-doc
liblzma-doc ncurses-doc libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libjs-html5shiv npm libmail-box-perl
python3-doc python3-tk python3-venv python3.8-venv python3.8-doc
binfmt-support
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common krb5-locales libgpm2
publicsuffix libltdl-dev nodejs-doc libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file fonts-font-awesome gettext
gettext-base groff-base help2man icu-devtools intltool-debian
libarchive-zip-perl libboost-chrono-dev libboost-chrono1.67-dev
libboost-chrono1.67.0 libboost-filesystem-dev libboost-filesystem1.67-dev
libboost-filesystem1.67.0 libboost-iostreams-dev libboost-iostreams1.67-dev
libboost-iostreams1.67.0 libboost-regex1.67-dev libboost-regex1.67.0
libboost-system-dev libboost-system1.67-dev libboost-system1.67.0
libboost1.67-dev libbrotli1 libbsd0 libc-ares2 libcroco3 libcurl3-gnutls
libdebhelper-perl libdeflate0 libelf1 libexpat1
libfile-stripnondeterminism-perl libglib2.0-0 libgssapi-krb5-2 libhts-dev
libhts3 libicu-dev libicu63 libjs-d3-format libjs-jquery
libjs-jquery-datatables libjs-jquery-datatables-extensions libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblzma-dev libmagic-mgc libmagic1
libmpdec2 libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libnode64
libpipeline1 libpsl5 libpython3-stdlib libpython3.8-minimal
libpython3.8-stdlib librtmp1 libsigsegv2 libssh2-1 libssl1.1
libsub-override-perl libtinfo5 libtool libuchardet0 libuv1 libxml2 m4 man-db
mime-support node-commander node-d3 node-d3-array node-d3-axis node-d3-brush
node-d3-chord node-d3-collection node-d3-color node-d3-contour
node-d3-dispatch node-d3-drag node-d3-dsv node-d3-ease node-d3-fetch
node-d3-force node-d3-format node-d3-geo node-d3-hierarchy
node-d3-interpolate node-d3-path node-d3-polygon node-d3-quadtree
node-d3-random node-d3-scale node-d3-scale-chromatic node-d3-selection
node-d3-shape node-d3-time node-d3-time-format node-d3-timer
node-d3-transition node-d3-voronoi node-d3-zoom node-iconv
node-normalize.css node-rw nodejs po-debconf python3 python3-minimal
python3.8 python3.8-minimal sbuild-build-depends-ataqv-dummy sensible-utils
zlib1g-dev
0 upgraded, 129 newly installed, 0 to remove and 0 not upgraded.
Need to get 67.8 MB of archives.
After this operation, 339 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Fkv79X/apt_archive ./ sbuild-build-depends-ataqv-dummy 0.invalid.0 [984 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf node-normalize.css all 8.0.1-3 [12.5 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.2-1 [744 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.2-1 [1628 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-2 [37.5 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.2-1 [1597 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.2-1 [410 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-2 [20.7 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-2 [62.6 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.10 [184 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.1-1 [1157 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-4 [592 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.10 [1003 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [515 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf help2man armhf 1.47.13 [180 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-3 [163 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-17 [8389 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.67.0 armhf 1.67.0-17 [229 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono1.67.0 armhf 1.67.0-17 [232 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono1.67-dev armhf 1.67.0-17 [234 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libboost-chrono-dev armhf 1.67.0.2+b11 [4872 B]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.67.0 armhf 1.67.0-17 [255 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libboost-system1.67-dev armhf 1.67.0-17 [231 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem1.67-dev armhf 1.67.0-17 [261 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libboost-filesystem-dev armhf 1.67.0.2+b11 [4284 B]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.67.0 armhf 1.67.0-17 [452 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-3 [8860 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libboost-regex1.67-dev armhf 1.67.0-17 [555 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams1.67.0 armhf 1.67.0-17 [246 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams1.67-dev armhf 1.67.0-17 [254 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libboost-iostreams-dev armhf 1.67.0.2+b11 [4236 B]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libboost-system-dev armhf 1.67.0.2+b11 [4388 B]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libc-ares2 armhf 1.15.0-1 [84.0 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7 [61.4 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7 [112 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7 [320 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7 [135 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1 [53.9 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.68.0-1 [284 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.5-3 [49.0 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-3 [319 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.10.2-3 [4796 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libjs-d3-format all 1:1.4.1-2 [16.7 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-datatables all 1.10.20+dfsg-1 [136 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-2 [351 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.2-1 [284 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.2-1 [932 B]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.34.2-1 [114 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libnode64 armhf 10.19.0~dfsg-3 [5187 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf nodejs armhf 10.19.0~dfsg-3 [88.1 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf node-commander all 4.0.1+really2.20.0-2 [24.0 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf node-d3-array all 1.2.4-2 [27.8 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf node-d3-axis all 1.0.12-2 [19.4 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf node-d3-dispatch all 1.0.6-1 [7604 B]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf node-d3-selection all 1.4.0-5 [31.2 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf node-d3-drag all 1.2.5-1 [13.8 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf node-d3-color all 1.2.8-1 [14.9 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf node-d3-interpolate all 1.4.0-1 [18.4 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf node-d3-ease all 1.0.5-2 [344 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf node-d3-timer all 1.0.9-2 [8384 B]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf node-d3-transition all 1.2.0-4 [21.9 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf node-d3-brush all 1.1.5-1 [181 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf node-d3-path all 1.0.9-1 [7964 B]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf node-d3-chord all 1.0.6-2 [130 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf node-d3-collection all 1.0.7-2 [11.5 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf node-d3-contour all 1.3.2-3 [5968 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf node-iconv armhf 2.3.5-3 [130 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf node-rw all 1.3.3-1 [6798 B]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf node-d3-dsv all 1.1.1-2 [14.1 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf node-d3-fetch all 1.1.2+dfsg-2 [15.8 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf node-d3-quadtree all 1.0.7-1 [12.9 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf node-d3-force all 1.2.1-2 [368 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf node-d3-format all 1:1.4.1-2 [8756 B]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf node-d3-geo all 1.11.9-1 [54.6 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf node-d3-hierarchy all 1.1.8-1 [302 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf node-d3-polygon all 1.0.5-2 [18.0 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf node-d3-random all 1.1.2-2 [6952 B]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf node-d3-time all 1.0.11-3 [14.5 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf node-d3-time-format all 2.1.3-2 [18.9 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf node-d3-scale all 2.2.2-2 [50.3 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf node-d3-scale-chromatic all 1.5.0-1 [18.3 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf node-d3-shape all 1.3.7-1 [40.8 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf node-d3-voronoi all 1.1.4-2 [17.4 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf node-d3-zoom all 1.8.3-1 [235 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf node-d3 all 5.12.0-2 [212 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 67.8 MB in 21s (3186 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 12225 files and directories currently installed.)
Preparing to unpack .../00-libbsd0_0.10.0-1_armhf.deb ...
Unpacking libbsd0:armhf (0.10.0-1) ...
Selecting previously unselected package libtinfo5:armhf.
Preparing to unpack .../01-libtinfo5_6.2-1_armhf.deb ...
Unpacking libtinfo5:armhf (6.2-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../02-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../03-libuchardet0_0.0.6-3_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.6-3) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../04-groff-base_1.22.4-4_armhf.deb ...
Unpacking groff-base (1.22.4-4) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../05-libpipeline1_1.5.2-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.2-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../06-man-db_2.9.1-1_armhf.deb ...
Unpacking man-db (2.9.1-1) ...
Selecting previously unselected package node-normalize.css.
Preparing to unpack .../07-node-normalize.css_8.0.1-3_all.deb ...
Unpacking node-normalize.css (8.0.1-3) ...
Selecting previously unselected package libssl1.1:armhf.
Preparing to unpack .../08-libssl1.1_1.1.1d-2_armhf.deb ...
Unpacking libssl1.1:armhf (1.1.1d-2) ...
Selecting previously unselected package libpython3.8-minimal:armhf.
Preparing to unpack .../09-libpython3.8-minimal_3.8.2-1_armhf.deb ...
Unpacking libpython3.8-minimal:armhf (3.8.2-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../10-libexpat1_2.2.9-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.9-1) ...
Selecting previously unselected package python3.8-minimal.
Preparing to unpack .../11-python3.8-minimal_3.8.2-1_armhf.deb ...
Unpacking python3.8-minimal (3.8.2-1) ...
Setting up libssl1.1:armhf (1.1.1d-2) ...
Setting up libpython3.8-minimal:armhf (3.8.2-1) ...
Setting up libexpat1:armhf (2.2.9-1) ...
Setting up python3.8-minimal (3.8.2-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13204 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.8.2-2_armhf.deb ...
Unpacking python3-minimal (3.8.2-2) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../1-mime-support_3.64_all.deb ...
Unpacking mime-support (3.64) ...
Selecting previously unselected package libmpdec2:armhf.
Preparing to unpack .../2-libmpdec2_2.4.2-3_armhf.deb ...
Unpacking libmpdec2:armhf (2.4.2-3) ...
Selecting previously unselected package libpython3.8-stdlib:armhf.
Preparing to unpack .../3-libpython3.8-stdlib_3.8.2-1_armhf.deb ...
Unpacking libpython3.8-stdlib:armhf (3.8.2-1) ...
Selecting previously unselected package python3.8.
Preparing to unpack .../4-python3.8_3.8.2-1_armhf.deb ...
Unpacking python3.8 (3.8.2-1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../5-libpython3-stdlib_3.8.2-2_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.8.2-2) ...
Setting up python3-minimal (3.8.2-2) ...
Selecting previously unselected package python3.
(Reading database ... 13606 files and directories currently installed.)
Preparing to unpack .../000-python3_3.8.2-2_armhf.deb ...
Unpacking python3 (3.8.2-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../001-sensible-utils_0.0.12+nmu1_all.deb ...
Unpacking sensible-utils (0.0.12+nmu1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../002-libmagic-mgc_1%3a5.38-4_armhf.deb ...
Unpacking libmagic-mgc (1:5.38-4) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../003-libmagic1_1%3a5.38-4_armhf.deb ...
Unpacking libmagic1:armhf (1:5.38-4) ...
Selecting previously unselected package file.
Preparing to unpack .../004-file_1%3a5.38-4_armhf.deb ...
Unpacking file (1:5.38-4) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../005-gettext-base_0.19.8.1-10_armhf.deb ...
Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../006-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../007-m4_1.4.18-4_armhf.deb ...
Unpacking m4 (1.4.18-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../008-autoconf_2.69-11.1_all.deb ...
Unpacking autoconf (2.69-11.1) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../009-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../010-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../011-autopoint_0.19.8.1-10_all.deb ...
Unpacking autopoint (0.19.8.1-10) ...
Selecting previously unselected package libtool.
Preparing to unpack .../012-libtool_2.4.6-14_all.deb ...
Unpacking libtool (2.4.6-14) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../013-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../014-libdebhelper-perl_12.10_all.deb ...
Unpacking libdebhelper-perl (12.10) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../015-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../016-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../017-libfile-stripnondeterminism-perl_1.6.3-2_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.6.3-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../018-dh-strip-nondeterminism_1.6.3-2_all.deb ...
Unpacking dh-strip-nondeterminism (1.6.3-2) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../019-libelf1_0.176-1.1_armhf.deb ...
Unpacking libelf1:armhf (0.176-1.1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../020-dwz_0.13-5_armhf.deb ...
Unpacking dwz (0.13-5) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../021-libglib2.0-0_2.64.1-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.64.1-1) ...
Selecting previously unselected package libicu63:armhf.
Preparing to unpack .../022-libicu63_63.2-3_armhf.deb ...
Unpacking libicu63:armhf (63.2-3) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../023-libxml2_2.9.10+dfsg-4_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-4) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../024-libcroco3_0.6.13-1_armhf.deb ...
Unpacking libcroco3:armhf (0.6.13-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../025-gettext_0.19.8.1-10_armhf.deb ...
Unpacking gettext (0.19.8.1-10) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../026-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../027-po-debconf_1.0.21_all.deb ...
Unpacking po-debconf (1.0.21) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../028-debhelper_12.10_all.deb ...
Unpacking debhelper (12.10) ...
Selecting previously unselected package fonts-font-awesome.
Preparing to unpack .../029-fonts-font-awesome_5.0.10+really4.7.0~dfsg-1_all.deb ...
Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ...
Selecting previously unselected package help2man.
Preparing to unpack .../030-help2man_1.47.13_armhf.deb ...
Unpacking help2man (1.47.13) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../031-icu-devtools_63.2-3_armhf.deb ...
Unpacking icu-devtools (63.2-3) ...
Selecting previously unselected package libboost1.67-dev:armhf.
Preparing to unpack .../032-libboost1.67-dev_1.67.0-17_armhf.deb ...
Unpacking libboost1.67-dev:armhf (1.67.0-17) ...
Selecting previously unselected package libboost-system1.67.0:armhf.
Preparing to unpack .../033-libboost-system1.67.0_1.67.0-17_armhf.deb ...
Unpacking libboost-system1.67.0:armhf (1.67.0-17) ...
Selecting previously unselected package libboost-chrono1.67.0:armhf.
Preparing to unpack .../034-libboost-chrono1.67.0_1.67.0-17_armhf.deb ...
Unpacking libboost-chrono1.67.0:armhf (1.67.0-17) ...
Selecting previously unselected package libboost-chrono1.67-dev:armhf.
Preparing to unpack .../035-libboost-chrono1.67-dev_1.67.0-17_armhf.deb ...
Unpacking libboost-chrono1.67-dev:armhf (1.67.0-17) ...
Selecting previously unselected package libboost-chrono-dev:armhf.
Preparing to unpack .../036-libboost-chrono-dev_1.67.0.2+b11_armhf.deb ...
Unpacking libboost-chrono-dev:armhf (1.67.0.2+b11) ...
Selecting previously unselected package libboost-filesystem1.67.0:armhf.
Preparing to unpack .../037-libboost-filesystem1.67.0_1.67.0-17_armhf.deb ...
Unpacking libboost-filesystem1.67.0:armhf (1.67.0-17) ...
Selecting previously unselected package libboost-system1.67-dev:armhf.
Preparing to unpack .../038-libboost-system1.67-dev_1.67.0-17_armhf.deb ...
Unpacking libboost-system1.67-dev:armhf (1.67.0-17) ...
Selecting previously unselected package libboost-filesystem1.67-dev:armhf.
Preparing to unpack .../039-libboost-filesystem1.67-dev_1.67.0-17_armhf.deb ...
Unpacking libboost-filesystem1.67-dev:armhf (1.67.0-17) ...
Selecting previously unselected package libboost-filesystem-dev:armhf.
Preparing to unpack .../040-libboost-filesystem-dev_1.67.0.2+b11_armhf.deb ...
Unpacking libboost-filesystem-dev:armhf (1.67.0.2+b11) ...
Selecting previously unselected package libboost-regex1.67.0:armhf.
Preparing to unpack .../041-libboost-regex1.67.0_1.67.0-17_armhf.deb ...
Unpacking libboost-regex1.67.0:armhf (1.67.0-17) ...
Selecting previously unselected package libicu-dev:armhf.
Preparing to unpack .../042-libicu-dev_63.2-3_armhf.deb ...
Unpacking libicu-dev:armhf (63.2-3) ...
Selecting previously unselected package libboost-regex1.67-dev:armhf.
Preparing to unpack .../043-libboost-regex1.67-dev_1.67.0-17_armhf.deb ...
Unpacking libboost-regex1.67-dev:armhf (1.67.0-17) ...
Selecting previously unselected package libboost-iostreams1.67.0:armhf.
Preparing to unpack .../044-libboost-iostreams1.67.0_1.67.0-17_armhf.deb ...
Unpacking libboost-iostreams1.67.0:armhf (1.67.0-17) ...
Selecting previously unselected package libboost-iostreams1.67-dev:armhf.
Preparing to unpack .../045-libboost-iostreams1.67-dev_1.67.0-17_armhf.deb ...
Unpacking libboost-iostreams1.67-dev:armhf (1.67.0-17) ...
Selecting previously unselected package libboost-iostreams-dev:armhf.
Preparing to unpack .../046-libboost-iostreams-dev_1.67.0.2+b11_armhf.deb ...
Unpacking libboost-iostreams-dev:armhf (1.67.0.2+b11) ...
Selecting previously unselected package libboost-system-dev:armhf.
Preparing to unpack .../047-libboost-system-dev_1.67.0.2+b11_armhf.deb ...
Unpacking libboost-system-dev:armhf (1.67.0.2+b11) ...
Selecting previously unselected package libbrotli1:armhf.
Preparing to unpack .../048-libbrotli1_1.0.7-6_armhf.deb ...
Unpacking libbrotli1:armhf (1.0.7-6) ...
Selecting previously unselected package libc-ares2:armhf.
Preparing to unpack .../049-libc-ares2_1.15.0-1_armhf.deb ...
Unpacking libc-ares2:armhf (1.15.0-1) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../050-libkrb5support0_1.17-7_armhf.deb ...
Unpacking libkrb5support0:armhf (1.17-7) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../051-libk5crypto3_1.17-7_armhf.deb ...
Unpacking libk5crypto3:armhf (1.17-7) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../052-libkeyutils1_1.6.1-2_armhf.deb ...
Unpacking libkeyutils1:armhf (1.6.1-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../053-libkrb5-3_1.17-7_armhf.deb ...
Unpacking libkrb5-3:armhf (1.17-7) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../054-libgssapi-krb5-2_1.17-7_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.17-7) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../055-libnghttp2-14_1.40.0-1+b2_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.40.0-1+b2) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../056-libpsl5_0.21.0-1_armhf.deb ...
Unpacking libpsl5:armhf (0.21.0-1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../057-librtmp1_2.4+20151223.gitfa8646d.1-2+b1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../058-libssh2-1_1.8.0-2.1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-2.1) ...
Selecting previously unselected package libcurl3-gnutls:armhf.
Preparing to unpack .../059-libcurl3-gnutls_7.68.0-1_armhf.deb ...
Unpacking libcurl3-gnutls:armhf (7.68.0-1) ...
Selecting previously unselected package libdeflate0.
Preparing to unpack .../060-libdeflate0_1.5-3_armhf.deb ...
Unpacking libdeflate0 (1.5-3) ...
Selecting previously unselected package libhts3:armhf.
Preparing to unpack .../061-libhts3_1.10.2-3_armhf.deb ...
Unpacking libhts3:armhf (1.10.2-3) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../062-liblzma-dev_5.2.4-1_armhf.deb ...
Unpacking liblzma-dev:armhf (5.2.4-1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../063-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package libhts-dev:armhf.
Preparing to unpack .../064-libhts-dev_1.10.2-3_armhf.deb ...
Unpacking libhts-dev:armhf (1.10.2-3) ...
Selecting previously unselected package libjs-d3-format.
Preparing to unpack .../065-libjs-d3-format_1%3a1.4.1-2_all.deb ...
Unpacking libjs-d3-format (1:1.4.1-2) ...
Selecting previously unselected package libjs-jquery.
Preparing to unpack .../066-libjs-jquery_3.3.1~dfsg-3_all.deb ...
Unpacking libjs-jquery (3.3.1~dfsg-3) ...
Selecting previously unselected package libjs-jquery-datatables.
Preparing to unpack .../067-libjs-jquery-datatables_1.10.20+dfsg-1_all.deb ...
Unpacking libjs-jquery-datatables (1.10.20+dfsg-1) ...
Selecting previously unselected package libjs-jquery-datatables-extensions.
Preparing to unpack .../068-libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-2_all.deb ...
Unpacking libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-2) ...
Selecting previously unselected package libncurses6:armhf.
Preparing to unpack .../069-libncurses6_6.2-1_armhf.deb ...
Unpacking libncurses6:armhf (6.2-1) ...
Selecting previously unselected package libncurses-dev:armhf.
Preparing to unpack .../070-libncurses-dev_6.2-1_armhf.deb ...
Unpacking libncurses-dev:armhf (6.2-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
Preparing to unpack .../071-libncurses5-dev_6.2-1_armhf.deb ...
Unpacking libncurses5-dev:armhf (6.2-1) ...
Selecting previously unselected package libuv1:armhf.
Preparing to unpack .../072-libuv1_1.34.2-1_armhf.deb ...
Unpacking libuv1:armhf (1.34.2-1) ...
Selecting previously unselected package libnode64:armhf.
Preparing to unpack .../073-libnode64_10.19.0~dfsg-3_armhf.deb ...
Unpacking libnode64:armhf (10.19.0~dfsg-3) ...
Selecting previously unselected package nodejs.
Preparing to unpack .../074-nodejs_10.19.0~dfsg-3_armhf.deb ...
Unpacking nodejs (10.19.0~dfsg-3) ...
Selecting previously unselected package node-commander.
Preparing to unpack .../075-node-commander_4.0.1+really2.20.0-2_all.deb ...
Unpacking node-commander (4.0.1+really2.20.0-2) ...
Selecting previously unselected package node-d3-array.
Preparing to unpack .../076-node-d3-array_1.2.4-2_all.deb ...
Unpacking node-d3-array (1.2.4-2) ...
Selecting previously unselected package node-d3-axis.
Preparing to unpack .../077-node-d3-axis_1.0.12-2_all.deb ...
Unpacking node-d3-axis (1.0.12-2) ...
Selecting previously unselected package node-d3-dispatch.
Preparing to unpack .../078-node-d3-dispatch_1.0.6-1_all.deb ...
Unpacking node-d3-dispatch (1.0.6-1) ...
Selecting previously unselected package node-d3-selection.
Preparing to unpack .../079-node-d3-selection_1.4.0-5_all.deb ...
Unpacking node-d3-selection (1.4.0-5) ...
Selecting previously unselected package node-d3-drag.
Preparing to unpack .../080-node-d3-drag_1.2.5-1_all.deb ...
Unpacking node-d3-drag (1.2.5-1) ...
Selecting previously unselected package node-d3-color.
Preparing to unpack .../081-node-d3-color_1.2.8-1_all.deb ...
Unpacking node-d3-color (1.2.8-1) ...
Selecting previously unselected package node-d3-interpolate.
Preparing to unpack .../082-node-d3-interpolate_1.4.0-1_all.deb ...
Unpacking node-d3-interpolate (1.4.0-1) ...
Selecting previously unselected package node-d3-ease.
Preparing to unpack .../083-node-d3-ease_1.0.5-2_all.deb ...
Unpacking node-d3-ease (1.0.5-2) ...
Selecting previously unselected package node-d3-timer.
Preparing to unpack .../084-node-d3-timer_1.0.9-2_all.deb ...
Unpacking node-d3-timer (1.0.9-2) ...
Selecting previously unselected package node-d3-transition.
Preparing to unpack .../085-node-d3-transition_1.2.0-4_all.deb ...
Unpacking node-d3-transition (1.2.0-4) ...
Selecting previously unselected package node-d3-brush.
Preparing to unpack .../086-node-d3-brush_1.1.5-1_all.deb ...
Unpacking node-d3-brush (1.1.5-1) ...
Selecting previously unselected package node-d3-path.
Preparing to unpack .../087-node-d3-path_1.0.9-1_all.deb ...
Unpacking node-d3-path (1.0.9-1) ...
Selecting previously unselected package node-d3-chord.
Preparing to unpack .../088-node-d3-chord_1.0.6-2_all.deb ...
Unpacking node-d3-chord (1.0.6-2) ...
Selecting previously unselected package node-d3-collection.
Preparing to unpack .../089-node-d3-collection_1.0.7-2_all.deb ...
Unpacking node-d3-collection (1.0.7-2) ...
Selecting previously unselected package node-d3-contour.
Preparing to unpack .../090-node-d3-contour_1.3.2-3_all.deb ...
Unpacking node-d3-contour (1.3.2-3) ...
Selecting previously unselected package node-iconv.
Preparing to unpack .../091-node-iconv_2.3.5-3_armhf.deb ...
Unpacking node-iconv (2.3.5-3) ...
Selecting previously unselected package node-rw.
Preparing to unpack .../092-node-rw_1.3.3-1_all.deb ...
Unpacking node-rw (1.3.3-1) ...
Selecting previously unselected package node-d3-dsv.
Preparing to unpack .../093-node-d3-dsv_1.1.1-2_all.deb ...
Unpacking node-d3-dsv (1.1.1-2) ...
Selecting previously unselected package node-d3-fetch.
Preparing to unpack .../094-node-d3-fetch_1.1.2+dfsg-2_all.deb ...
Unpacking node-d3-fetch (1.1.2+dfsg-2) ...
Selecting previously unselected package node-d3-quadtree.
Preparing to unpack .../095-node-d3-quadtree_1.0.7-1_all.deb ...
Unpacking node-d3-quadtree (1.0.7-1) ...
Selecting previously unselected package node-d3-force.
Preparing to unpack .../096-node-d3-force_1.2.1-2_all.deb ...
Unpacking node-d3-force (1.2.1-2) ...
Selecting previously unselected package node-d3-format.
Preparing to unpack .../097-node-d3-format_1%3a1.4.1-2_all.deb ...
Unpacking node-d3-format (1:1.4.1-2) ...
Selecting previously unselected package node-d3-geo.
Preparing to unpack .../098-node-d3-geo_1.11.9-1_all.deb ...
Unpacking node-d3-geo (1.11.9-1) ...
Selecting previously unselected package node-d3-hierarchy.
Preparing to unpack .../099-node-d3-hierarchy_1.1.8-1_all.deb ...
Unpacking node-d3-hierarchy (1.1.8-1) ...
Selecting previously unselected package node-d3-polygon.
Preparing to unpack .../100-node-d3-polygon_1.0.5-2_all.deb ...
Unpacking node-d3-polygon (1.0.5-2) ...
Selecting previously unselected package node-d3-random.
Preparing to unpack .../101-node-d3-random_1.1.2-2_all.deb ...
Unpacking node-d3-random (1.1.2-2) ...
Selecting previously unselected package node-d3-time.
Preparing to unpack .../102-node-d3-time_1.0.11-3_all.deb ...
Unpacking node-d3-time (1.0.11-3) ...
Selecting previously unselected package node-d3-time-format.
Preparing to unpack .../103-node-d3-time-format_2.1.3-2_all.deb ...
Unpacking node-d3-time-format (2.1.3-2) ...
Selecting previously unselected package node-d3-scale.
Preparing to unpack .../104-node-d3-scale_2.2.2-2_all.deb ...
Unpacking node-d3-scale (2.2.2-2) ...
Selecting previously unselected package node-d3-scale-chromatic.
Preparing to unpack .../105-node-d3-scale-chromatic_1.5.0-1_all.deb ...
Unpacking node-d3-scale-chromatic (1.5.0-1) ...
Selecting previously unselected package node-d3-shape.
Preparing to unpack .../106-node-d3-shape_1.3.7-1_all.deb ...
Unpacking node-d3-shape (1.3.7-1) ...
Selecting previously unselected package node-d3-voronoi.
Preparing to unpack .../107-node-d3-voronoi_1.1.4-2_all.deb ...
Unpacking node-d3-voronoi (1.1.4-2) ...
Selecting previously unselected package node-d3-zoom.
Preparing to unpack .../108-node-d3-zoom_1.8.3-1_all.deb ...
Unpacking node-d3-zoom (1.8.3-1) ...
Selecting previously unselected package node-d3.
Preparing to unpack .../109-node-d3_5.12.0-2_all.deb ...
Unpacking node-d3 (5.12.0-2) ...
Selecting previously unselected package sbuild-build-depends-ataqv-dummy.
Preparing to unpack .../110-sbuild-build-depends-ataqv-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-ataqv-dummy (0.invalid.0) ...
Setting up libboost1.67-dev:armhf (1.67.0-17) ...
Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libkeyutils1:armhf (1.6.1-2) ...
Setting up libpsl5:armhf (0.21.0-1) ...
Setting up mime-support (3.64) ...
Setting up libmagic-mgc (1:5.38-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.64.1-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (12.10) ...
Setting up libbrotli1:armhf (1.0.7-6) ...
Setting up libnghttp2-14:armhf (1.40.0-1+b2) ...
Setting up libmagic1:armhf (1:5.38-4) ...
Setting up libdeflate0 (1.5-3) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up libc-ares2:armhf (1.15.0-1) ...
Setting up file (1:5.38-4) ...
Setting up libicu63:armhf (63.2-3) ...
Setting up libkrb5support0:armhf (1.17-7) ...
Setting up help2man (1.47.13) ...
Setting up autotools-dev (20180224.1) ...
Setting up libuv1:armhf (1.34.2-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libncurses6:armhf (6.2-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libnode64:armhf (10.19.0~dfsg-3) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up icu-devtools (63.2-3) ...
Setting up libboost-iostreams1.67.0:armhf (1.67.0-17) ...
Setting up libk5crypto3:armhf (1.17-7) ...
Setting up liblzma-dev:armhf (5.2.4-1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libjs-d3-format (1:1.4.1-2) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up libkrb5-3:armhf (1.17-7) ...
Setting up libmpdec2:armhf (2.4.2-3) ...
Setting up libjs-jquery (3.3.1~dfsg-3) ...
Setting up libboost-system1.67.0:armhf (1.67.0-17) ...
Setting up libpython3.8-stdlib:armhf (3.8.2-1) ...
Setting up python3.8 (3.8.2-1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up node-normalize.css (8.0.1-3) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libicu-dev:armhf (63.2-3) ...
Setting up libxml2:armhf (2.9.10+dfsg-4) ...
Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-1) ...
Setting up libpython3-stdlib:armhf (3.8.2-2) ...
Setting up libjs-jquery-datatables-extensions (0.0+git20150910.28fd64e+dfsg-2) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-2) ...
Setting up libncurses-dev:armhf (6.2-1) ...
Setting up libboost-regex1.67.0:armhf (1.67.0-17) ...
Setting up libboost-chrono1.67.0:armhf (1.67.0-17) ...
Setting up libtool (2.4.6-14) ...
Setting up libboost-regex1.67-dev:armhf (1.67.0-17) ...
Setting up m4 (1.4.18-4) ...
Setting up python3 (3.8.2-2) ...
Setting up nodejs (10.19.0~dfsg-3) ...
update-alternatives: using /usr/bin/nodejs to provide /usr/bin/js (js) in auto mode
Setting up node-d3-path (1.0.9-1) ...
Setting up libjs-jquery-datatables (1.10.20+dfsg-1) ...
Setting up libboost-chrono1.67-dev:armhf (1.67.0-17) ...
Setting up node-rw (1.3.3-1) ...
Setting up node-d3-polygon (1.0.5-2) ...
Setting up node-d3-quadtree (1.0.7-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-7) ...
Setting up node-d3-collection (1.0.7-2) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up node-d3-voronoi (1.1.4-2) ...
Setting up node-d3-dispatch (1.0.6-1) ...
Setting up node-d3-time (1.0.11-3) ...
Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up node-commander (4.0.1+really2.20.0-2) ...
Setting up dwz (0.13-5) ...
Setting up node-d3-array (1.2.4-2) ...
Setting up groff-base (1.22.4-4) ...
Setting up libncurses5-dev:armhf (6.2-1) ...
Setting up libboost-filesystem1.67.0:armhf (1.67.0-17) ...
Setting up libboost-system1.67-dev:armhf (1.67.0-17) ...
Setting up node-d3-geo (1.11.9-1) ...
Setting up libboost-iostreams1.67-dev:armhf (1.67.0-17) ...
Setting up node-d3-random (1.1.2-2) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up node-iconv (2.3.5-3) ...
Setting up node-d3-timer (1.0.9-2) ...
Setting up node-d3-color (1.2.8-1) ...
Setting up node-d3-interpolate (1.4.0-1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up node-d3-format (1:1.4.1-2) ...
Setting up node-d3-hierarchy (1.1.8-1) ...
Setting up libboost-filesystem1.67-dev:armhf (1.67.0-17) ...
Setting up node-d3-ease (1.0.5-2) ...
Setting up libboost-chrono-dev:armhf (1.67.0.2+b11) ...
Setting up node-d3-time-format (2.1.3-2) ...
Setting up node-d3-scale-chromatic (1.5.0-1) ...
Setting up libboost-system-dev:armhf (1.67.0.2+b11) ...
Setting up node-d3-chord (1.0.6-2) ...
Setting up node-d3-selection (1.4.0-5) ...
Setting up libcurl3-gnutls:armhf (7.68.0-1) ...
Setting up node-d3-axis (1.0.12-2) ...
Setting up libboost-iostreams-dev:armhf (1.67.0.2+b11) ...
Setting up node-d3-shape (1.3.7-1) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up node-d3-drag (1.2.5-1) ...
Setting up node-d3-scale (2.2.2-2) ...
Setting up node-d3-force (1.2.1-2) ...
Setting up node-d3-contour (1.3.2-3) ...
Setting up node-d3-dsv (1.1.1-2) ...
Setting up node-d3-transition (1.2.0-4) ...
Setting up libboost-filesystem-dev:armhf (1.67.0.2+b11) ...
Setting up libhts3:armhf (1.10.2-3) ...
Setting up node-d3-zoom (1.8.3-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libhts-dev:armhf (1.10.2-3) ...
Setting up node-d3-fetch (1.1.2+dfsg-2) ...
Setting up node-d3-brush (1.1.5-1) ...
Setting up node-d3 (5.12.0-2) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.10) ...
Setting up sbuild-build-depends-ataqv-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-8+rpi1 gcc-9_9.3.0-8+rpi1 libc6-dev_2.30-4+rpi1 libstdc++-9-dev_9.3.0-8+rpi1 libstdc++6_10-20200324-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.0.1 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-8+rpi1 dash_0.5.10.2-7 debconf_1.5.73 debhelper_12.10 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fonts-font-awesome_5.0.10+really4.7.0~dfsg-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-8+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10-20200324-1+rpi1 gcc-6-base_6.5.0-1+rpi3 gcc-7-base_7.5.0-5 gcc-8-base_8.4.0-1+rpi1 gcc-9_9.3.0-8+rpi1 gcc-9-base_9.3.0-8+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-4 gzip_1.10-2 help2man_1.47.13 hostname_3.23 icu-devtools_63.2-3 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-6 libapt-pkg6.0_2.0.1 libarchive-zip-perl_1.68-1 libasan5_9.3.0-8+rpi1 libassuan0_2.5.3-7 libatomic1_10-20200324-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-5+rpi1 libblkid1_2.34-0.1 libboost-chrono-dev_1.67.0.2+b11 libboost-chrono1.67-dev_1.67.0-17 libboost-chrono1.67.0_1.67.0-17 libboost-filesystem-dev_1.67.0.2+b11 libboost-filesystem1.67-dev_1.67.0-17 libboost-filesystem1.67.0_1.67.0-17 libboost-iostreams-dev_1.67.0.2+b11 libboost-iostreams1.67-dev_1.67.0-17 libboost-iostreams1.67.0_1.67.0-17 libboost-regex1.67-dev_1.67.0-17 libboost-regex1.67.0_1.67.0-17 libboost-system-dev_1.67.0.2+b11 libboost-system1.67-dev_1.67.0-17 libboost-system1.67.0_1.67.0-17 libboost1.67-dev_1.67.0-17 libbrotli1_1.0.7-6 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-ares2_1.15.0-1 libc-bin_2.30-4+rpi1 libc-dev-bin_2.30-4+rpi1 libc6_2.30-4+rpi1 libc6-dev_2.30-4+rpi1 libcap-ng0_0.7.9-2.1+b1 libcc1-0_10-20200324-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.15-1 libcrypt1_1:4.4.15-1 libctf-nobfd0_2.34-5+rpi1 libctf0_2.34-5+rpi1 libcurl3-gnutls_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_12.10 libdeflate0_1.5-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.6.3-2 libgcc-9-dev_9.3.0-8+rpi1 libgcc-s1_10-20200324-1+rpi1 libgcc1_1:10-20200324-1+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.1-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.12-2 libgomp1_10-20200324-1+rpi1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-7 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.10.2-3 libhts3_1.10.2-3 libicu-dev_63.2-3 libicu63_63.2-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjs-d3-format_1:1.4.1-2 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-datatables_1.10.20+dfsg-1 libjs-jquery-datatables-extensions_0.0+git20150910.28fd64e+dfsg-2 libk5crypto3_1.17-7 libkeyutils1_1.6.1-2 libkrb5-3_1.17-7 libkrb5support0_1.17-7 libksba8_1.3.5-2 libldap-2.4-2_2.4.49+dfsg-2 libldap-common_2.4.49+dfsg-2 liblocale-gettext-perl_1.07-4 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses-dev_6.2-1 libncurses5-dev_6.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnode64_10.19.0~dfsg-3 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-2 libpsl5_0.21.0-1 libpython3-stdlib_3.8.2-2 libpython3.8-minimal_3.8.2-1 libpython3.8-stdlib_3.8.2-1 libreadline8_8.0-4 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.31.1-4 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.3.0-8+rpi1 libstdc++6_10-20200324-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_244.3-1+rpi1 libtasn1-6_4.16.0-2 libtext-charwidth-perl_0.04-10 libtext-iconv-perl_1.7-7 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10-20200324-1+rpi1 libuchardet0_0.0.6-3 libudev1_244.3-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libuv1_1.34.2-1 libxml2_2.9.10+dfsg-4 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 node-commander_4.0.1+really2.20.0-2 node-d3_5.12.0-2 node-d3-array_1.2.4-2 node-d3-axis_1.0.12-2 node-d3-brush_1.1.5-1 node-d3-chord_1.0.6-2 node-d3-collection_1.0.7-2 node-d3-color_1.2.8-1 node-d3-contour_1.3.2-3 node-d3-dispatch_1.0.6-1 node-d3-drag_1.2.5-1 node-d3-dsv_1.1.1-2 node-d3-ease_1.0.5-2 node-d3-fetch_1.1.2+dfsg-2 node-d3-force_1.2.1-2 node-d3-format_1:1.4.1-2 node-d3-geo_1.11.9-1 node-d3-hierarchy_1.1.8-1 node-d3-interpolate_1.4.0-1 node-d3-path_1.0.9-1 node-d3-polygon_1.0.5-2 node-d3-quadtree_1.0.7-1 node-d3-random_1.1.2-2 node-d3-scale_2.2.2-2 node-d3-scale-chromatic_1.5.0-1 node-d3-selection_1.4.0-5 node-d3-shape_1.3.7-1 node-d3-time_1.0.11-3 node-d3-time-format_2.1.3-2 node-d3-timer_1.0.9-2 node-d3-transition_1.2.0-4 node-d3-voronoi_1.1.4-2 node-d3-zoom_1.8.3-1 node-iconv_2.3.5-3 node-normalize.css_8.0.1-3 node-rw_1.3.3-1 nodejs_10.19.0~dfsg-3 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python3_3.8.2-2 python3-minimal_3.8.2-2 python3.8_3.8.2-1 python3.8-minimal_3.8.2-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-ataqv-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Apr 3 18:57:28 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ataqv_1.1.1+ds-2.dsc
dpkg-source: info: extracting ataqv in /<<BUILDDIR>>/ataqv-1.1.1+ds
dpkg-source: info: unpacking ataqv_1.1.1+ds.orig.tar.xz
dpkg-source: info: unpacking ataqv_1.1.1+ds-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying modernize
dpkg-source: info: applying no_cov
dpkg-source: info: applying python3
dpkg-source: info: applying packaged_js
dpkg-source: info: applying spelling
dpkg-source: info: applying clean_less
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-7a457e4d-b57f-4759-b0ca-18a1ebf72d09
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package ataqv
dpkg-buildpackage: info: source version 1.1.1+ds-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
cp -sf /usr/share/nodejs/d3/dist/d3.min.js src/web/js/d3.min.js
cp -sf /usr/share/javascript/jquery-datatables-extensions/JSZip/jszip.min.js src/web/js/jszip.min.js
cp -sf /usr/share/javascript/jquery-datatables-extensions/Buttons/css/buttons.dataTables.min.css src/web/css/datatables.buttons.min.css
cp -sf /usr/share/javascript/jquery-datatables/css/jquery.dataTables.min.css src/web/css/datatables.min.css
cp -sf /usr/share/fonts-font-awesome/css/font-awesome.min.css src/web/css/font-awesome.min.css
cp -sf /usr/share/javascript/normalize.css/normalize.css src/web/css/normalize.css
cp -sf /usr/share/fonts-font-awesome/fonts/* src/web/fonts/
cp -s /usr/share/javascript/jquery/jquery.min.js \
/usr/share/javascript/jquery-datatables-extensions/pdfmake/build/pdfmake.min.js \
/usr/share/javascript/jquery-datatables/jquery.dataTables.min.js \
/usr/share/javascript/jquery-datatables-extensions/Buttons/js/dataTables.buttons.min.js \
/usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.colVis.min.js \
/usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.html5.min.js \
/usr/share/javascript/jquery-datatables-extensions/Buttons/js/buttons.print.min.js \
/usr/share/javascript/jquery-datatables-extensions/Responsive/js/dataTables.responsive.min.js \
src/web/js/
rm -f src/web/js/datatables.min.js
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
dh_auto_build -- all testing/run_ataqv_tests
make -j4 "INSTALL=install --strip-program=true" all testing/run_ataqv_tests
make[2]: Entering directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o build/ataqv.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/ataqv.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o build/Features.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o build/HTS.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o build/IO.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/IO.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/9/bits/stl_map.h: In member function ‘ReferenceFeatureCollection* FeatureTree::get_reference_feature_collection(const string&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::pair<long long unsigned int, std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::__cxx11::basic_string<char> >*, std::vector<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<std::__cxx11::basic_string<char> > FeatureTree::get_references_by_feature_count()’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::__cxx11::basic_string<char> >*, std::vector<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator<Feature>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Feature>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void ReferenceFeatureCollection::add(const Feature&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/9/bits/stl_map.h: In member function ‘void FeatureTree::add(Feature&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o build/Metrics.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o build/Peaks.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Peak&}; _Tp = Peak; _Alloc = std::allocator<Peak>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Peak>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_map.h: In member function ‘ReferencePeakCollection* PeakTree::get_reference_peaks(const string&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o build/Utils.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function ‘void ReferencePeakCollection::sort()’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void ReferencePeakCollection::add(const Peak&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/run_ataqv_tests.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/run_ataqv_tests.cpp
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_map.h: In member function ‘void PeakTree::add(Peak&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks_by_overlapping_hqaa_descending()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/test_features.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_features.cpp
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks_by_size_descending()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_features.cpp:1:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_features.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____167()’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_features.cpp:171:47: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=]
171 | REQUIRE_THROWS_AS(collection.add(f), std::out_of_range);
| ^~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/test_hts.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_hts.cpp
In file included from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_hts.cpp:3:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_hts.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____169()’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_hts.cpp:200:57: warning: catching polymorphic type ‘class HTSException’ by value [-Wcatch-value=]
200 | REQUIRE_THROWS_AS(record_to_string(header, record), HTSException);
| ^~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/catch.hpp:76,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_features.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/catch.hpp:76,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_features.cpp:1:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >; _Distance = int; _Tp = Feature; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/catch.hpp:76,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_features.cpp:1:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator<Feature>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Feature>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void MetricsCollector::load_excluded_regions()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/test_io.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_io.cpp
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long double&}; _Tp = long double; _Alloc = std::allocator<long double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, double> >’} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void ____C_A_T_C_H____T_E_S_T____61()’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = long long unsigned int; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/test_metrics.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_metrics.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/test_peaks.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_peaks.cpp
In file included from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_peaks.cpp:1:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_peaks.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____172()’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_peaks.cpp:181:44: warning: catching polymorphic type ‘class std::out_of_range’ by value [-Wcatch-value=]
181 | REQUIRE_THROWS_AS(rpc.add(peak3), std::out_of_range);
| ^~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Metrics::add_alignment(const bam_hdr_t*, const bam1_t*)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:879:1: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
879 | }
| ^
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/catch.hpp:569,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/run_ataqv_tests.cpp:2:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Catch::SectionEndInfo&}; _Tp = Catch::SectionEndInfo; _Alloc = std::allocator<Catch::SectionEndInfo>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Catch::SectionEndInfo>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Catch::SectionEndInfo*, std::vector<Catch::SectionEndInfo> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/catch.hpp:569,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/run_ataqv_tests.cpp:2:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘virtual void Catch::RunContext::sectionEndedEarly(const Catch::SectionEndInfo&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Catch::SectionEndInfo*, std::vector<Catch::SectionEndInfo> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In destructor ‘Catch::Section::~Section()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Catch::SectionEndInfo*, std::vector<Catch::SectionEndInfo> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_metrics.cpp:3:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____169()’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_metrics.cpp:172:56: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=]
172 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException);
| ^~~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_metrics.cpp:177:56: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=]
177 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException);
| ^~~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____242()’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_metrics.cpp:248:52: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=]
248 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException);
| ^~~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_metrics.cpp: In function ‘void ____C_A_T_C_H____T_E_S_T____251()’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_metrics.cpp:258:52: warning: catching polymorphic type ‘class FileException’ by value [-Wcatch-value=]
258 | REQUIRE_THROWS_AS(collector.load_alignments(), FileException);
| ^~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.hpp:16,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:21:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/json.hpp: In function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
2082 | basic_json(std::initializer_list<basic_json> init,
| ^~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.hpp:16,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:21:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/json.hpp: In constructor ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
2082 | basic_json(std::initializer_list<basic_json> init,
| ^~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp: In member function ‘nlohmann::json Library::to_json()’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
1331 | };
| ^
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘nlohmann::json Metrics::to_json()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
1521 | };
| ^
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/catch.hpp:569,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_metrics.cpp:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/catch.hpp:569,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_metrics.cpp:3:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_type& nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::operator[](nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::size_type) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/test_utils.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/test_utils.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function ‘nlohmann::json MetricsCollector::to_json()’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/Features.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/9/bits/stl_map.h: In member function ‘ReferenceFeatureCollection* FeatureTree::get_reference_feature_collection(const string&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair<long long unsigned int, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > >}; _Tp = std::pair<long long unsigned int, std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::__cxx11::basic_string<char> >*, std::vector<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘std::vector<std::__cxx11::basic_string<char> > FeatureTree::get_references_by_feature_count()’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<long long unsigned int, std::__cxx11::basic_string<char> >*, std::vector<std::pair<long long unsigned int, std::__cxx11::basic_string<char> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/HTS.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/IO.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/IO.cpp
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator<Feature>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Feature>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void ReferenceFeatureCollection::add(const Feature&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.cpp:11:
/usr/include/c++/9/bits/stl_map.h: In member function ‘void FeatureTree::add(Feature&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferenceFeatureCollection> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/Metrics.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/Peaks.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/Utils.o -c /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Peak&}; _Tp = Peak; _Alloc = std::allocator<Peak>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Peak>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >; _Compare = numeric_string_comparator; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_map.h: In member function ‘ReferencePeakCollection* PeakTree::get_reference_peaks(const string&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Val_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Val_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1820:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1820 | __unguarded_linear_insert(_RandomAccessIterator __last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1839 | __insertion_sort(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o build/ataqv build/ataqv.o build/Features.o build/HTS.o build/IO.o build/Metrics.o build/Peaks.o build/Utils.o -Wl,-z,relro -Wl,-z,now -lboost_filesystem -lboost_iostreams -lboost_system -lboost_chrono -lhts -lz -lncurses -lpthread
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h: In member function ‘void ReferencePeakCollection::sort()’:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void ReferencePeakCollection::add(const Peak&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_map.h: In member function ‘void PeakTree::add(Peak&)’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >, numeric_string_comparator, std::allocator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, ReferencePeakCollection> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Distance = int; _Tp = Peak; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h: In function ‘void std::__make_heap(_RandomAccessIterator, _RandomAccessIterator, _Compare&) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
326 | __make_heap(_RandomAccessIterator __first, _RandomAccessIterator __last,
| ^~~~~~~~~~~
/usr/include/c++/9/bits/stl_heap.h:326:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter<bool (*)(const Peak&, const Peak&)>]’:
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1939 | __introsort_loop(_RandomAccessIterator __first,
| ^~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1939:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1953:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1953 | std::__introsort_loop(__cut, __last, __depth_limit, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1671:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1671 | std::__make_heap(__first, __middle, __comp);
| ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks_by_overlapping_hqaa_descending()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.hpp:13,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:13:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector<Peak> PeakTree::list_peaks_by_size_descending()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Peaks.cpp:7:
/usr/include/c++/9/bits/stl_algo.h:1967:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1967 | std::__introsort_loop(__first, __last,
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
1968 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1969 | __comp);
| ~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1884:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1884 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1889:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Peak*, std::vector<Peak> >’ changed in GCC 7.1
1889 | std::__insertion_sort(__first, __last, __comp);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Feature&}; _Tp = Feature; _Alloc = std::allocator<Feature>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<Feature>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void MetricsCollector::load_excluded_regions()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Feature*, std::vector<Feature> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator<long long unsigned int>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long double&}; _Tp = long double; _Alloc = std::allocator<long double>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<long double>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/map:60,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::pair<std::_Rb_tree_node_base*, std::_Rb_tree_node_base*> std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_get_insert_hint_unique_pos(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, const key_type&) [with _Key = int; _Val = std::pair<const int, double>; _KeyOfValue = std::_Select1st<std::pair<const int, double> >; _Compare = std::less<int>; _Alloc = std::allocator<std::pair<const int, double> >]’:
/usr/include/c++/9/bits/stl_tree.h:2187:5: note: parameter passing for argument of type ‘std::_Rb_tree<int, std::pair<const int, double>, std::_Select1st<std::pair<const int, double> >, std::less<int>, std::allocator<std::pair<const int, double> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const int, double> >’} changed in GCC 7.1
2187 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >&>, std::tuple<>}; _Key = std::__cxx11::basic_string<char>; _Val = std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>; _KeyOfValue = std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]’:
/usr/include/c++/9/bits/stl_tree.h:2452:7: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >’} changed in GCC 7.1
2452 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/map:61,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:10,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = std::__cxx11::basic_string<char>; _Tp = long long unsigned int; _Compare = std::less<std::__cxx11::basic_string<char> >; _Alloc = std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >]’:
/usr/include/c++/9/bits/stl_map.h:499:8: note: parameter passing for argument of type ‘std::_Rb_tree<std::__cxx11::basic_string<char>, std::pair<const std::__cxx11::basic_string<char>, long long unsigned int>, std::_Select1st<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >, std::less<std::__cxx11::basic_string<char> >, std::allocator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> > >::const_iterator’ {aka ‘std::_Rb_tree_const_iterator<std::pair<const std::__cxx11::basic_string<char>, long long unsigned int> >’} changed in GCC 7.1
499 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void Metrics::add_alignment(const bam_hdr_t*, const bam1_t*)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:879:1: note: parameter passing for argument of type ‘std::vector<long long unsigned int>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<long long unsigned int*, std::vector<long long unsigned int> >’} changed in GCC 7.1
879 | }
| ^
In file included from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.hpp:16,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:21:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/json.hpp: In function ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
2082 | basic_json(std::initializer_list<basic_json> init,
| ^~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const nlohmann::basic_json<std::map, std::vector, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >, bool, long long int, long long unsigned int, double, std::allocator, nlohmann::adl_serializer>&}; _Tp = nlohmann::basic_json<>; _Alloc = std::allocator<nlohmann::basic_json<> >]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > >::iterator’ {aka ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘void nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::push_back(const nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>&) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.hpp:16,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:21:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/json.hpp: In constructor ‘nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::basic_json(std::initializer_list<nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer> >, bool, nlohmann::basic_json<ObjectType, ArrayType, StringType, BooleanType, NumberIntegerType, NumberUnsignedType, NumberFloatType, AllocatorType, JSONSerializer>::value_t) [with ObjectType = std::map; ArrayType = std::vector; StringType = std::__cxx11::basic_string<char>; BooleanType = bool; NumberIntegerType = long long int; NumberUnsignedType = long long unsigned int; NumberFloatType = double; AllocatorType = std::allocator; JSONSerializer = nlohmann::adl_serializer]’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/json.hpp:2082:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
2082 | basic_json(std::initializer_list<basic_json> init,
| ^~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp: In member function ‘nlohmann::json Library::to_json()’:
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
1331 | };
| ^
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1331:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘nlohmann::json Metrics::to_json()’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<long double*, std::vector<long double> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
1521 | };
| ^
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:1521:5: note: parameter passing for argument of type ‘std::initializer_list<nlohmann::basic_json<> >’ changed in GCC 7.1
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Utils.hpp:6,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/HTS.hpp:19,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Features.hpp:12,
from /<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp/Metrics.cpp:18:
/usr/include/c++/9/bits/vector.tcc: In member function ‘nlohmann::json MetricsCollector::to_json()’:
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<nlohmann::basic_json<>*, std::vector<nlohmann::basic_json<>, std::allocator<nlohmann::basic_json<> > > >’ changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/ataqv-1.1.1+ds=. -fstack-protector-strong -Wformat -Werror=format-security -std=c++11 -pthread -O3 -g -Wdate-time -D_FORTIFY_SOURCE=2 -pedantic -Wall -Wextra -Wwrite-strings -Wstrict-overflow -fno-strict-aliasing -fPIC -I/<<BUILDDIR>>/ataqv-1.1.1+ds/src/cpp -D LINUX -o testing/run_ataqv_tests testing/run_ataqv_tests.o testing/test_features.o testing/test_hts.o testing/test_io.o testing/test_metrics.o testing/test_peaks.o testing/test_utils.o testing/Features.o testing/HTS.o testing/IO.o testing/Metrics.o testing/Peaks.o testing/Utils.o -Wl,-z,relro -Wl,-z,now -lboost_filesystem -lboost_iostreams -lboost_system -lboost_chrono -lhts -lz -lncurses -lpthread
make[2]: Leaving directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
dh_auto_test -a
make -j4 test
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
[E::sam_format1_append] Corrupted aux data for read SRR891268.122333488
Reading human autosomal references from autosomal_references.gz.
Autosomal references for human:
I
II
III
Reading human autosomal references from autosomal_references.gz.
Autosomal references for human:
I
II
III
Reading human autosomal references from autosomal_references.gz.
Autosomal references for human:
I
II
III
Read 411 excluded regions from exclude.dac.bed.gz.
Read 1649 excluded regions from exclude.duke.bed.gz.
Loading TSS file 'hg19.tss.refseq.bed.gz'.
Excluding TSS [chr11 10530722 10530723 MTRNR2L8 0 -] which overlaps excluded region [chr11 10529403 10531969 Low_mappability_island 1000 .]
Excluding TSS [chr12 118573688 118573689 PEBP1 0 +] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .]
Excluding TSS [chr14 105196180 105196181 ADSSL1 0 +] which overlaps excluded region [chr14 105195912 105196275 TAR1 1000 .]
Excluding TSS [chr17 22022436 22022437 MTRNR2L1 0 +] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .]
Excluding TSS [chr20 55934877 55934878 MTRNR2L3 0 -] which overlaps excluded region [chr20 55932703 55936114 chrM 1000 .]
Excluding TSS [chr5 79946853 79946854 MTRNR2L2 0 -] which overlaps excluded region [chr5 79945807 79948223 Low_mappability_island 1000 .]
Excluding TSS [chr6 62284007 62284008 MTRNR2L9 0 +] which overlaps excluded region [chr6 62283966 62284581 Low_mappability_island 1000 .]
Excluding TSS [chr7 57207570 57207571 ZNF479 0 -] which overlaps excluded region [chr7 57205319 57210318 BSR/Beta 1000 .]
Excluding TSS [chr7 63688851 63688852 ZNF679 0 +] which overlaps excluded region [chr7 63686197 63693336 BSR/Beta 1000 .]
Excluding TSS [chr7 142374130 142374131 MTRNR2L6 0 +] which overlaps excluded region [chr7 142372972 142375638 Low_mappability_island 1000 .]
Excluding TSS [chrX 55208943 55208944 MTRNR2L10 0 -] which overlaps excluded region [chrX 55204685 55210460 chrM 1000 .]
Excluding TSS [chrY 25130409 25130410 BPY2B 0 +] which overlaps excluded region [chrY 25122419 25160800 BSR/Beta 1000 .]
Excluding TSS [chrY 26764150 26764151 BPY2B 0 +] which overlaps excluded region [chrY 26756160 26794538 BSR/Beta 1000 .]
Excluding TSS [chrY 27198250 27198251 BPY2B 0 -] which overlaps excluded region [chrY 27167859 27206241 BSR/Beta 1000 .]
chr1 feature count: 2687
chr2 feature count: 1715
chr3 feature count: 1490
chr4 feature count: 1004
chr5 feature count: 1132
chr6 feature count: 1368
chr7 feature count: 1169
chr8 feature count: 913
chr9 feature count: 1025
chr10 feature count: 1039
chr11 feature count: 1642
chr12 feature count: 1350
chr13 feature count: 433
chr14 feature count: 785
chr15 feature count: 812
chr16 feature count: 1106
chr17 feature count: 1528
chr18 feature count: 398
chr19 feature count: 1785
chr20 feature count: 694
chr21 feature count: 321
chr22 feature count: 593
Loaded 24989 TSS in 21.3761 seconds. (1169.02 TSS/second).
Collecting metrics from test.bam.
Logging problematic reads to SRR891275.problems.
Loading peaks for read group SRR891275 from test.peaks.gz.
Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000 .]
Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000 .]
Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000 .]
Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000 .]
Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000 .]
Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .]
Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .]
Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000 .]
Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .]
Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .]
Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000 .]
Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000 .]
Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000 .]
Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000 .]
Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000 .]
Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000 .]
Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .]
Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .]
Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .]
Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .]
Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000 .]
Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000 .]
Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000 .]
Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .]
Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .]
Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .]
Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000 .]
Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000 .]
Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000 .]
Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000 .]
Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000 .]
Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000 .]
Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .]
Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .]
Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000 .]
Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000 .]
Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .]
Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .]
Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000 .]
Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000 .]
Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000 .]
Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000 .]
Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000 .]
Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000 .]
Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000 .]
Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000 .]
Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000 .]
Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000 .]
Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .]
Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .]
Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000 .]
Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000 .]
Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000 .]
Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000 .]
Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000 .]
Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000 .]
Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000 .]
Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000 .]
Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000 .]
Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .]
Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .]
Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000 .]
Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000 .]
Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000 .]
Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000 .]
Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .]
Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .]
Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .]
Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .]
Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000 .]
Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000 .]
Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000 .]
Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000 .]
Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000 .]
Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .]
Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .]
Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .]
Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .]
Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000 .]
Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000 .]
Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .]
Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .]
Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000 .]
Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000 .]
Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .]
Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .]
Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000 .]
Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .]
Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .]
Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000 .]
Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000 .]
Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000 .]
Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000 .]
chr1 peak count: 3667
chr2 peak count: 3154
chr3 peak count: 2528
chr4 peak count: 1814
chr5 peak count: 2042
chr6 peak count: 2483
chr7 peak count: 1999
chr8 peak count: 1647
chr9 peak count: 1475
chr10 peak count: 1815
chr11 peak count: 1878
chr12 peak count: 2078
chr13 peak count: 1026
chr14 peak count: 1275
chr15 peak count: 1140
chr16 peak count: 1211
chr17 peak count: 1664
chr18 peak count: 772
chr19 peak count: 1595
chr20 peak count: 864
chr21 peak count: 487
chr22 peak count: 662
Loaded 37276 peaks in 147.904 seconds. (252.029 peaks/second).
Logging problematic reads to SRR891278.problems.
Loading peaks for read group SRR891278 from test.peaks.gz.
Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000 .]
Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000 .]
Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000 .]
Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000 .]
Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000 .]
Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000 .]
Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .]
Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000 .]
Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000 .]
Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000 .]
Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .]
Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000 .]
Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000 .]
Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000 .]
Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000 .]
Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000 .]
Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000 .]
Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000 .]
Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000 .]
Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .]
Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000 .]
Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .]
Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000 .]
Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000 .]
Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000 .]
Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000 .]
Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000 .]
Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000 .]
Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000 .]
Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .]
Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000 .]
Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000 .]
Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000 .]
Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000 .]
Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000 .]
Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000 .]
Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000 .]
Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .]
Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000 .]
Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000 .]
Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000 .]
Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .]
Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000 .]
Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000 .]
Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000 .]
Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000 .]
Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000 .]
Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000 .]
Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000 .]
Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000 .]
Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000 .]
Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000 .]
Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000 .]
Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000 .]
Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000 .]
Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000 .]
Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000 .]
Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000 .]
Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .]
Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000 .]
Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000 .]
Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000 .]
Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000 .]
Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000 .]
Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000 .]
Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000 .]
Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000 .]
Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000 .]
Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000 .]
Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000 .]
Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000 .]
Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .]
Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000 .]
Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000 .]
Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000 .]
Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000 .]
Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000 .]
Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .]
Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000 .]
Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .]
Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000 .]
Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000 .]
Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000 .]
Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000 .]
Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000 .]
Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000 .]
Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .]
Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000 .]
Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .]
Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000 .]
Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000 .]
Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000 .]
Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000 .]
Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .]
Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000 .]
Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000 .]
Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000 .]
Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .]
Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000 .]
Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000 .]
Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .]
Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000 .]
Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000 .]
Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000 .]
Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000 .]
Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000 .]
chr1 peak count: 3667
chr2 peak count: 3154
chr3 peak count: 2528
chr4 peak count: 1814
chr5 peak count: 2042
chr6 peak count: 2483
chr7 peak count: 1999
chr8 peak count: 1647
chr9 peak count: 1475
chr10 peak count: 1815
chr11 peak count: 1878
chr12 peak count: 2078
chr13 peak count: 1026
chr14 peak count: 1275
chr15 peak count: 1140
chr16 peak count: 1211
chr17 peak count: 1664
chr18 peak count: 772
chr19 peak count: 1595
chr20 peak count: 864
chr21 peak count: 487
chr22 peak count: 662
Loaded 37276 peaks in 149.08 seconds. (250.04 peaks/second).
New maximum proper pair fragment length: 42 from [SRR891275.608 1123 chr1 569907 57 42M = 569907 42 CACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAA @@@FFFEFFDHFBHIJIEFHJIGGF:CFGEDF?FFHEG@FGG XA:Z:chrM,+9359,42M,1; MD:Z:42 NM:i:0 AS:i:42 XS:i:37 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 330 from [SRR891278.50 1123 chr1 569913 27 50M = 570193 330 NCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGC #1=DDFFFHHGHHJJJJIJJJGEGHIGGIIIJJJJIIFGGIJHIIJICHH XA:Z:chrM,+9365,50M,2; MD:Z:0C49 NM:i:1 AS:i:49 XS:i:44 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 53 from [SRR891275.421 1187 chr1 569924 15 50M = 569927 53 TGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGCCACCACACACC CCCFFFFFGHHHHIGIJIJIEHIGIIIJJGIJJJJGGGJJJJJGIIJJFI XA:Z:chrM,+9376,50M,1; MD:Z:50 NM:i:0 AS:i:50 XS:i:47 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 67 from [SRR891275.1617 99 chr1 2059335 60 50M = 2059352 67 CACCTTAGCTCTGGACACGAATTTGCGGTCATTGCTGTTCTTGTGTCTCT ???DB?D8C:CD42C<EB))3ACDEAEAD6D><<*?DB<9?BBBD?9DD4 MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 112 from [SRR891275.176 99 chr1 2419720 60 50M = 2419782 112 ATCCCTGGGACTGTAGGTGGGAAGGGCATTGCAAGGCACAGGGGCGGGGA @BCFFDEDDHHHHHIJICGHI=GHIGIJJJJJIJIJIGHFHIJBHHDB87 MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 361 from [SRR891278.227 99 chr1 17047555 60 50M = 17047866 361 GACTCCCTCAAGGGCAGCTGAGAGGGAGGACTCAGGGCACTGGGGAAAGT @CCFFFFFHGHHHJGEHIIJGGJIIJDIIGGEHIIJJBFGGHGEHHIJFC XA:Z:chr1,+144886802,48M2S,2; MD:Z:50 NM:i:0 AS:i:50 XS:i:42 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 216 from [SRR891275.1770 163 chr1 18154381 60 50M = 18154547 216 CAACTGTTTTGCTTACTCTGACTAATACAGAGAAGGGAGCCACAATATAC C@CFFFDFGHHHHJJJJJJJJJJJJJIEIIHIJJJIGIJIJJJCHHIJJJ MD:Z:50 NM:i:0 AS:i:50 XS:i:21 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 562 from [SRR891275.385 163 chr1 43042844 60 50M = 43043356 562 AACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCTGATGCAGA CCCFFFFFHGGHGJJJJFIEHHHJJGIIJIIJJJJJIHGIJIJGIIJIII MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 609 from [SRR891275.714 99 chr1 79875808 60 50M = 79876367 609 GGCCCAGCCAAGTTGACACATAAAATAAACTTTCACAATATTGCAGGCAG @@@DDDFFFHAH<EFGGGG@EGECHIDHHAE<<*11?DB?9*?*:336?B MD:Z:50 NM:i:0 AS:i:50 XS:i:30 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 424 from [SRR891278.592 163 chr1 238449255 60 50M = 238449629 424 CCTGCAATTCTGAATAGGTCTGTGAATATACAGACTTTTTATTTGTACAT B@@BDDFFHGHGHJGEHDFHGHDHHJCEGIIGGEHIJGIGEHIIIIGEIH MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 633 from [SRR891278.342 99 chr2 4228733 60 50M = 4229316 633 CATTTAATGCAAACTAATCTAGCTATTATCATCTGGAGCTGCAGGCTATA CCCFFFFDHHGFHABDIGIIEGIIGCHCHIIIIIGHAEF):CCF;F;BDH MD:Z:50 NM:i:0 AS:i:50 XS:i:20 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 649 from [SRR891278.1592 99 chr2 55845390 60 50M = 55845989 649 GTGTGTTGACGATTTCCTGTTTCTTGCAGAGCGATTCACCGTTAAGGCTC ;1=+AB3BB<<?AC?EEAE+3A<B4CC93*:9C)?;DBD?68)?###### MD:Z:33C16 NM:i:1 AS:i:45 XS:i:0 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
Calculating TSS coverage...
Added TSS coverage for chr22; thread count=1
Added TSS coverage for chr21; thread count=1
Added TSS coverage for chr20; thread count=1
Added TSS coverage for chr19; thread count=1
Added TSS coverage for chr18; thread count=1
Added TSS coverage for chr17; thread count=1
Added TSS coverage for chr16; thread count=1
Added TSS coverage for chr15; thread count=1
Added TSS coverage for chr14; thread count=1
Added TSS coverage for chr13; thread count=1
Added TSS coverage for chr12; thread count=1
Added TSS coverage for chr11; thread count=1
Added TSS coverage for chr10; thread count=1
Added TSS coverage for chr9; thread count=1
Added TSS coverage for chr8; thread count=1
Added TSS coverage for chr7; thread count=1
Added TSS coverage for chr6; thread count=1
Added TSS coverage for chr5; thread count=1
Added TSS coverage for chr4; thread count=1
Added TSS coverage for chr3; thread count=1
Added TSS coverage for chr2; thread count=1
Added TSS coverage for chr1; thread count=1
All TSS jobs started. Waiting for last ones to complete.
Calculated TSS coverage in 1.35322 seconds.
Calculating TSS metrics...
Calculated TSS metrics in 0.00187041 seconds.
Calculating TSS metrics...
Calculated TSS metrics in 0.00190941 seconds.
Analyzed 1040 reads in 2.08806 seconds (498.069 reads/second).
ataqv 1.1.1
Operating parameters
====================
Thread limit: 1
Ignoring read groups: no
TSS extension: 1000
Experiment information
======================
Organism: human
Description: a collector for unit tests
URL: https://theparkerlab.org
Reference genome configuration
==============================
Mitochondrial reference: chrM
Autosomal references:
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
20, 21, 22, chr1, chr2, chr3, chr4, chr5, chr6, chr7, chr8, chr9,
chr10, chr11, chr12, chr13, chr14, chr15, chr16, chr17, chr18,
chr19, chr20, chr21, chr22
Read Group
==========
ID: SRR891275
Library: SRR891275
Sample: GSM1155964
Description: a library of brutal tests?
Sequencing center:
Sequencing date:
Sequencing platform: ILLUMINA
Platform model:
Platform unit:
Flow order:
Key sequence:
Predicted median insert size:
Programs:
Metrics
-------
Read Mapping Metrics
--------------------
Total reads: 520
Total problems: 104 (20.000%)
Properly paired and mapped reads: 416 (80.000%)
Secondary reads: 10 (1.923%)
Supplementary reads: 0 (0.000%)
Duplicate reads: 155 (29.808% of all reads)
Quality Indicators
------------------
Short to mononucleosomal ratio: 1.281
High quality, nonduplicate, properly paired, uniquely mapped autosomal alignments: 200
as a percentage of autosomal reads: 91.324%
as a percentage of all reads: 38.462%
TSS enrichment: 6.000
Paired Read Metrics
-------------------
Paired reads: 520 (100.000%)
Paired and mapped reads: 424 (81.538%)
FR reads: 416 (80.000000%)
First of pair: 260 (50.000%)
Second of pair: 260 (50.000%)
Forward reads: 268 (51.538%)
Reverse reads: 252 (48.462%)
Forward mate reads: 261 (50.192%)
Reverse mate reads: 259 (49.808%)
Unmapped Read Metrics
---------------------
Unmapped reads: 9 (1.731%)
Unmapped mate reads: 2 (0.385%)
Reads not passing quality controls: 0 (0.000%)
Unpaired reads: 0 (0.000%)
Reads with zero mapping quality: 62 (11.923%)
Aberrant Mapping Metrics
------------------------
RF reads: 9 (1.730769%)
FF reads: 6 (1.153846%)
RR reads: 8 (1.538462%)
Reads that paired and mapped but...
on different chromosomes: 6 (1.154%)
probably too far from their mates: 2 (0.385%) (longest proper fragment seems to be 609)
just not properly: 0 (0.000%)
Autosomal/Mitochondrial Metrics
-------------------------------
Total autosomal reads: 219 (42.115% of all reads)
Total mitochondrial reads: 177 (34.038% of all reads)
Duplicate autosomal reads: 18 (8.219% of all autosomal reads)
Duplicate mitochondrial reads: 93 (52.542% of all mitochondrial reads)
Mapping Quality
---------------
Mean MAPQ: 47.033
Median MAPQ: 60.000
Reads with MAPQ >=...
5: 439 (84.423%)
10: 439 (84.423%)
15: 438 (84.231%)
20: 436 (83.846%)
25: 435 (83.654%)
30: 420 (80.769%)
Peak Metrics
------------
Peak count: 37276
High quality autosomal alignments that overlapped peaks: 23 (11.500% of all high quality autosomal alignments)
Number of high quality autosomal alignments overlapping the top 10,000 peaks:
Top peak: 2 (1.000% of all high quality autosomal alignments)
Top 10 peaks: 20 (10.000% of all high quality autosomal alignments)
Top 100 peaks: 23 (11.500% of all high quality autosomal alignments)
Top 1000 peaks: 23 (11.500% of all high quality autosomal alignments)
Top 10,000 peaks: 23 (11.500% of all high quality autosomal alignments)
Read Group
==========
ID: SRR891278
Library: SRR891278
Sample: GSM1155967
Description: a library of brutal tests?
Sequencing center:
Sequencing date:
Sequencing platform: ILLUMINA
Platform model:
Platform unit:
Flow order:
Key sequence:
Predicted median insert size:
Programs:
Metrics
-------
Read Mapping Metrics
--------------------
Total reads: 520
Total problems: 90 (17.308%)
Properly paired and mapped reads: 430 (82.692%)
Secondary reads: 10 (1.923%)
Supplementary reads: 0 (0.000%)
Duplicate reads: 158 (30.385% of all reads)
Quality Indicators
------------------
Short to mononucleosomal ratio: 2.357
High quality, nonduplicate, properly paired, uniquely mapped autosomal alignments: 200
as a percentage of autosomal reads: 91.743%
as a percentage of all reads: 38.462%
TSS enrichment: 3.687
Paired Read Metrics
-------------------
Paired reads: 520 (100.000%)
Paired and mapped reads: 440 (84.615%)
FR reads: 430 (82.692308%)
First of pair: 259 (49.808%)
Second of pair: 261 (50.192%)
Forward reads: 261 (50.192%)
Reverse reads: 259 (49.808%)
Forward mate reads: 260 (50.000%)
Reverse mate reads: 260 (50.000%)
Unmapped Read Metrics
---------------------
Unmapped reads: 8 (1.538%)
Unmapped mate reads: 4 (0.769%)
Reads not passing quality controls: 0 (0.000%)
Unpaired reads: 0 (0.000%)
Reads with zero mapping quality: 49 (9.423%)
Aberrant Mapping Metrics
------------------------
RF reads: 6 (1.153846%)
FF reads: 4 (0.769231%)
RR reads: 9 (1.730769%)
Reads that paired and mapped but...
on different chromosomes: 8 (1.538%)
probably too far from their mates: 2 (0.385%) (longest proper fragment seems to be 649)
just not properly: 0 (0.000%)
Autosomal/Mitochondrial Metrics
-------------------------------
Total autosomal reads: 218 (41.923% of all reads)
Total mitochondrial reads: 192 (36.923% of all reads)
Duplicate autosomal reads: 17 (7.798% of all autosomal reads)
Duplicate mitochondrial reads: 92 (47.917% of all mitochondrial reads)
Mapping Quality
---------------
Mean MAPQ: 48.044
Median MAPQ: 60.000
Reads with MAPQ >=...
5: 449 (86.346%)
10: 445 (85.577%)
15: 443 (85.192%)
20: 442 (85.000%)
25: 442 (85.000%)
30: 417 (80.192%)
Peak Metrics
------------
Peak count: 37276
High quality autosomal alignments that overlapped peaks: 92 (46.000% of all high quality autosomal alignments)
Number of high quality autosomal alignments overlapping the top 10,000 peaks:
Top peak: 2 (1.000% of all high quality autosomal alignments)
Top 10 peaks: 20 (10.000% of all high quality autosomal alignments)
Top 100 peaks: 92 (46.000% of all high quality autosomal alignments)
Top 1000 peaks: 92 (46.000% of all high quality autosomal alignments)
Top 10,000 peaks: 92 (46.000% of all high quality autosomal alignments)
[E::hts_open_format] Failed to open file "missing_alignment_file.bam" : No such file or directory
Read 411 excluded regions from exclude.dac.bed.gz.
Read 1649 excluded regions from exclude.duke.bed.gz.
Collecting metrics from test.bam.
Logging problematic reads to Test collector.problems.
Loading peaks for read group Test collector from test.peaks.gz.
Excluding peak [chr1 569780 570073 both.broad_peak_1] which overlaps excluded region [chr1 564449 570371 High_Mappability_island 1000.000 .]
Excluding peak [chr1 5727305 5727512 both.broad_peak_97] which overlaps excluded region [chr1 5725866 5736651 Low_mappability_island 1000.000 .]
Excluding peak [chr1 16840415 16841121 both.broad_peak_297] which overlaps excluded region [chr1 16839923 16841396 Low_mappability_island 1000.000 .]
Excluding peak [chr1 121354253 121354849 both.broad_peak_1896] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .]
Excluding peak [chr1 121478396 121478755 both.broad_peak_1897] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .]
Excluding peak [chr1 121484326 121485516 both.broad_peak_1898] which overlaps excluded region [chr1 121351474 121487059 centromeric_repeat 1000.000 .]
Excluding peak [chr1 142538265 142538603 both.broad_peak_1899] which overlaps excluded region [chr1 142535434 142543081 Satellite_repeat 1000.000 .]
Excluding peak [chr1 148928074 148928756 both.broad_peak_1971] which overlaps excluded region [chr1 148927799 148928362 TAR1 1000.000 .]
Excluding peak [chr10 38804202 38804431 both.broad_peak_4296] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000.000 .]
Excluding peak [chr10 38817221 38818020 both.broad_peak_4297] which overlaps excluded region [chr10 38772277 38819357 Satellite_repeat 1000.000 .]
Excluding peak [chr10 38872037 38872278 both.broad_peak_4298] which overlaps excluded region [chr10 38868892 38889025 Satellite_repeat 1000.000 .]
Excluding peak [chr10 42355450 42355650 both.broad_peak_4299] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42358135 42358433 both.broad_peak_4300] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42364634 42365245 both.broad_peak_4301] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42379790 42380383 both.broad_peak_4302] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42384574 42385679 both.broad_peak_4303] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42392602 42392861 both.broad_peak_4304] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42396775 42396995 both.broad_peak_4305] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42398498 42400769 both.broad_peak_4306] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42404317 42404537 both.broad_peak_4307] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42408166 42408438 both.broad_peak_4308] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42442445 42442676 both.broad_peak_4309] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42527244 42528189 both.broad_peak_4310] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42529217 42530048 both.broad_peak_4311] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42534598 42534872 both.broad_peak_4312] which overlaps excluded region [chr10 42354835 42548642 centromeric_repeat 1000.000 .]
Excluding peak [chr10 42596780 42597198 both.broad_peak_4313] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000.000 .]
Excluding peak [chr10 42599471 42600289 both.broad_peak_4314] which overlaps excluded region [chr10 42596676 42602082 Satellite_repeat 1000.000 .]
Excluding peak [chr10 42817448 42818278 both.broad_peak_4315] which overlaps excluded region [chr10 42790522 42818398 Satellite_repeat 1000.000 .]
Excluding peak [chr11 189746 190314 both.broad_peak_5511] which overlaps excluded region [chr11 189419 190691 TAR1 1000.000 .]
Excluding peak [chr11 50731852 50732074 both.broad_peak_6138] which overlaps excluded region [chr11 50318471 50784078 centromeric_repeat 1000.000 .]
Excluding peak [chr11 51572059 51572261 both.broad_peak_6139] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .]
Excluding peak [chr11 51579362 51580694 both.broad_peak_6140] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .]
Excluding peak [chr11 51591018 51591457 both.broad_peak_6141] which overlaps excluded region [chr11 51567242 51594226 centromeric_repeat 1000.000 .]
Excluding peak [chr11 55006615 55007430 both.broad_peak_6142] which overlaps excluded region [chr11 54694046 55027975 centromeric_repeat 1000.000 .]
Excluding peak [chr11 73221686 73221937 both.broad_peak_6590] which overlaps excluded region [chr11 73221660 73221946 Low_mappability_island 1000.000 .]
Excluding peak [chr12 94193 94658 both.broad_peak_7396] which overlaps excluded region [chr12 94147 95158 TAR1 1000.000 .]
Excluding peak [chr12 34841382 34841617 both.broad_peak_7957] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000.000 .]
Excluding peak [chr12 34846246 34846543 both.broad_peak_7958] which overlaps excluded region [chr12 34432130 34857010 centromeric_repeat 1000.000 .]
Excluding peak [chr12 38008155 38008894 both.broad_peak_7959] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000.000 .]
Excluding peak [chr12 38023173 38023373 both.broad_peak_7960] which overlaps excluded region [chr12 37989447 38441828 centromeric_repeat 1000.000 .]
Excluding peak [chr12 118573678 118574095 both.broad_peak_9235] which overlaps excluded region [chr12 118573638 118573695 LSU-rRNA_Hsa 1000.000 .]
Excluding peak [chr12 127650467 127651165 both.broad_peak_9421] which overlaps excluded region [chr12 127650407 127651075 LSU-rRNA_Hsa 1000.000 .]
Excluding peak [chr14 32953483 32953821 both.broad_peak_10712] which overlaps excluded region [chr14 32953263 32954381 Low_mappability_island 1000.000 .]
Excluding peak [chr15 80444564 80445859 both.broad_peak_12630] which overlaps excluded region [chr15 80445513 80445569 (GAGTG)n 1000.000 .]
Excluding peak [chr16 60436 61192 both.broad_peak_12924] which overlaps excluded region [chr16 60058 61142 TAR1 1000.000 .]
Excluding peak [chr16 33866265 33866524 both.broad_peak_13513] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .]
Excluding peak [chr16 33918664 33919304 both.broad_peak_13514] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .]
Excluding peak [chr16 34009313 34009561 both.broad_peak_13515] which overlaps excluded region [chr16 33864355 34023306 centromeric_repeat 1000.000 .]
Excluding peak [chr16 46386270 46386795 both.broad_peak_13516] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .]
Excluding peak [chr16 46391235 46392140 both.broad_peak_13517] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .]
Excluding peak [chr16 46403548 46403849 both.broad_peak_13518] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .]
Excluding peak [chr16 46416804 46417405 both.broad_peak_13519] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .]
Excluding peak [chr16 46427429 46427991 both.broad_peak_13520] which overlaps excluded region [chr16 46385718 46456668 Satellite_repeat 1000.000 .]
Excluding peak [chr17 22020593 22020916 both.broad_peak_14569] which overlaps excluded region [chr17 22018524 22032049 Low_mappability_island 1000.000 .]
Excluding peak [chr17 22252084 22253296 both.broad_peak_14570] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000.000 .]
Excluding peak [chr17 22261278 22261740 both.broad_peak_14571] which overlaps excluded region [chr17 22221073 22263006 centromeric_repeat 1000.000 .]
Excluding peak [chr17 25264883 25265249 both.broad_peak_14572] which overlaps excluded region [chr17 25263010 25268059 Satellite_repeat 1000.000 .]
Excluding peak [chr17 41381728 41382265 both.broad_peak_14950] which overlaps excluded region [chr17 41381502 41382591 High_Mappability_island 1000.000 .]
Excluding peak [chr17 41465631 41466936 both.broad_peak_14957] which overlaps excluded region [chr17 41465562 41467288 High_Mappability_island 1000.000 .]
Excluding peak [chr17 51183057 51183341 both.broad_peak_15172] which overlaps excluded region [chr17 51183038 51183763 Low_mappability_island 1000.000 .]
Excluding peak [chr17 58602907 58603721 both.broad_peak_15290] which overlaps excluded region [chr17 58603715 58603738 (GAGTG)n 1000.000 .]
Excluding peak [chr18 111564 112042 both.broad_peak_15816] which overlaps excluded region [chr18 105658 112233 Satellite_repeat 1000.000 .]
Excluding peak [chr18 18512827 18513193 both.broad_peak_16011] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000.000 .]
Excluding peak [chr18 18516045 18520399 both.broad_peak_16012] which overlaps excluded region [chr18 18510894 18520356 centromeric_repeat 1000.000 .]
Excluding peak [chr19 21776802 21777550 both.broad_peak_17342] which overlaps excluded region [chr19 21776132 21780768 BSR/Beta 1000.000 .]
Excluding peak [chr19 24169382 24170027 both.broad_peak_17364] which overlaps excluded region [chr19 24156856 24171961 BSR/Beta 1000.000 .]
Excluding peak [chr19 24474565 24474765 both.broad_peak_17369] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000.000 .]
Excluding peak [chr19 24526069 24526320 both.broad_peak_17370] which overlaps excluded region [chr19 24385474 24633168 centromeric_repeat 1000.000 .]
Excluding peak [chr19 27731880 27733339 both.broad_peak_17371] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .]
Excluding peak [chr19 27738359 27738668 both.broad_peak_17372] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .]
Excluding peak [chr19 27756701 27756901 both.broad_peak_17373] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .]
Excluding peak [chr19 27801311 27801531 both.broad_peak_17374] which overlaps excluded region [chr19 27730611 28262682 centromeric_repeat 1000.000 .]
Excluding peak [chr19 37784325 37784692 both.broad_peak_17536] which overlaps excluded region [chr19 37759473 37797722 centromeric_repeat 1000.000 .]
Excluding peak [chr19 42069917 42070450 both.broad_peak_17680] which overlaps excluded region [chr19 42069989 42071891 LSU-rRNA_Hsa 1000.000 .]
Excluding peak [chr2 89848588 89848836 both.broad_peak_19338] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .]
Excluding peak [chr2 89872032 89872646 both.broad_peak_19339] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .]
Excluding peak [chr2 89878336 89879257 both.broad_peak_19340] which overlaps excluded region [chr2 89830421 89880514 Satellite_repeat 1000.000 .]
Excluding peak [chr2 90449580 90449808 both.broad_peak_19342] which overlaps excluded region [chr2 90443001 90545431 Low_mappability_island 1000.000 .]
Excluding peak [chr2 91847848 91848177 both.broad_peak_19344] which overlaps excluded region [chr2 91847957 91848503 TAR1 1000.000 .]
Excluding peak [chr2 92272876 92273767 both.broad_peak_19345] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92281197 92281779 both.broad_peak_19346] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92284237 92284462 both.broad_peak_19347] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92290435 92291262 both.broad_peak_19348] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92296588 92297023 both.broad_peak_19349] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92305535 92305892 both.broad_peak_19350] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 92317234 92317870 both.broad_peak_19351] which overlaps excluded region [chr2 92267428 92326280 centromeric_repeat 1000.000 .]
Excluding peak [chr2 114361072 114362020 both.broad_peak_19697] which overlaps excluded region [chr2 114361054 114362417 TAR1 1000.000 .]
Excluding peak [chr2 132559385 132560425 both.broad_peak_19833] which overlaps excluded region [chr2 132560214 132560696 TAR1 1000.000 .]
Excluding peak [chr2 132996509 132996755 both.broad_peak_19834] which overlaps excluded region [chr2 132994855 133007983 ALR/Alpha 1000.000 .]
Excluding peak [chr2 149639210 149639450 both.broad_peak_19986] which overlaps excluded region [chr2 149639207 149639515 Low_mappability_island 1000.000 .]
Excluding peak [chr2 162135291 162136055 both.broad_peak_20150] which overlaps excluded region [chr2 162135000 162139241 Low_mappability_island 1000.000 .]
Excluding peak [chr20 26269111 26270030 both.broad_peak_21666] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .]
Excluding peak [chr20 26278258 26278484 both.broad_peak_21667] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .]
Excluding peak [chr20 26289332 26290609 both.broad_peak_21668] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .]
Excluding peak [chr20 26305634 26305887 both.broad_peak_21669] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .]
Excluding peak [chr20 26317322 26318676 both.broad_peak_21670] which overlaps excluded region [chr20 26257032 26320267 centromeric_repeat 1000.000 .]
Excluding peak [chr20 29512475 29512675 both.broad_peak_21671] which overlaps excluded region [chr20 29511127 29514978 ALR/Alpha 1000.000 .]
Excluding peak [chr20 29517798 29518922 both.broad_peak_21672] which overlaps excluded region [chr20 29517710 29521147 centromeric_repeat 1000.000 .]
Excluding peak [chr20 29813756 29813985 both.broad_peak_21678] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000.000 .]
Excluding peak [chr20 29831826 29832026 both.broad_peak_21679] which overlaps excluded region [chr20 29803876 29833334 centromeric_repeat 1000.000 .]
Excluding peak [chr20 62917250 62917592 both.broad_peak_22240] which overlaps excluded region [chr20 62916702 62918053 telomeric_repeat 1000.000 .]
Excluding peak [chr21 9825749 9827187 both.broad_peak_22241] which overlaps excluded region [chr21 9825451 9827612 High_Mappability_island 1000.000 .]
Excluding peak [chr21 10773372 10773572 both.broad_peak_22242] which overlaps excluded region [chr21 10697886 10860890 centromeric_repeat 1000.000 .]
Excluding peak [chr21 11186125 11187338 both.broad_peak_22243] which overlaps excluded region [chr21 11186054 11188131 Satellite_repeat 1000.000 .]
Excluding peak [chr22 18878342 18878659 both.broad_peak_22759] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .]
Excluding peak [chr22 18879876 18880128 both.broad_peak_22760] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .]
Excluding peak [chr22 18883583 18883799 both.broad_peak_22761] which overlaps excluded region [chr22 18876789 18884510 Satellite_repeat 1000.000 .]
Excluding peak [chr22 22652231 22653042 both.broad_peak_22847] which overlaps excluded region [chr22 22652105 22652554 TAR1 1000.000 .]
Excluding peak [chr3 25508907 25509133 both.broad_peak_23723] which overlaps excluded region [chr3 25508897 25509131 Low_mappability_island 1000.000 .]
Excluding peak [chr3 73159761 73160669 both.broad_peak_24512] which overlaps excluded region [chr3 73159606 73161131 snRNA 1000.000 .]
Excluding peak [chr3 96336804 96337073 both.broad_peak_24578] which overlaps excluded region [chr3 96335934 96337436 Low_mappability_island 1000.000 .]
Excluding peak [chr3 196625608 196625808 both.broad_peak_25903] which overlaps excluded region [chr3 196625514 196625860 Satellite_repeat 1000.000 .]
Excluding peak [chr4 49094768 49094968 both.broad_peak_26437] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .]
Excluding peak [chr4 49107449 49107766 both.broad_peak_26438] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .]
Excluding peak [chr4 49122928 49123231 both.broad_peak_26439] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .]
Excluding peak [chr4 49151102 49151911 both.broad_peak_26440] which overlaps excluded region [chr4 49085372 49342114 centromeric_repeat 1000.000 .]
Excluding peak [chr4 49645060 49645303 both.broad_peak_26441] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000.000 .]
Excluding peak [chr4 49659456 49659760 both.broad_peak_26442] which overlaps excluded region [chr4 49488472 49662085 centromeric_repeat 1000.000 .]
Excluding peak [chr4 56194226 56194485 both.broad_peak_26481] which overlaps excluded region [chr4 56194229 56194584 Low_mappability_island 1000.000 .]
Excluding peak [chr4 68264592 68266730 both.broad_peak_26530] which overlaps excluded region [chr4 68264186 68266830 centromeric_repeat 1000.000 .]
Excluding peak [chr4 191032545 191032745 both.broad_peak_27751] which overlaps excluded region [chr4 191026302 191044344 telomeric_repeat 1000.000 .]
Excluding peak [chr5 46364115 46364315 both.broad_peak_28116] which overlaps excluded region [chr5 45908253 46411114 centromeric_repeat 1000.000 .]
Excluding peak [chr5 49450550 49450756 both.broad_peak_28117] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000.000 .]
Excluding peak [chr5 49547478 49547699 both.broad_peak_28118] which overlaps excluded region [chr5 49405493 49554574 centromeric_repeat 1000.000 .]
Excluding peak [chr5 134259765 134260404 both.broad_peak_29117] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000.000 .]
Excluding peak [chr5 134262625 134262877 both.broad_peak_29118] which overlaps excluded region [chr5 134258949 134264271 Low_mappability_island 1000.000 .]
Excluding peak [chr6 58776533 58779369 both.broad_peak_30874] which overlaps excluded region [chr6 58745955 58780547 centromeric_repeat 1000.000 .]
Excluding peak [chr7 43878412 43878832 both.broad_peak_32927] which overlaps excluded region [chr7 43878355 43878530 TAR1 1000.000 .]
Excluding peak [chr7 45291476 45291676 both.broad_peak_32976] which overlaps excluded region [chr7 45291517 45291740 Low_mappability_island 1000.000 .]
Excluding peak [chr7 57549361 57549585 both.broad_peak_33054] which overlaps excluded region [chr7 57544726 57556913 Satellite_repeat 1000.000 .]
Excluding peak [chr7 57957789 57957996 both.broad_peak_33055] which overlaps excluded region [chr7 57939184 58055539 centromeric_repeat 1000.000 .]
Excluding peak [chr7 61968705 61969761 both.broad_peak_33056] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000.000 .]
Excluding peak [chr7 61986136 61986336 both.broad_peak_33057] which overlaps excluded region [chr7 61054285 62454680 centromeric_repeat 1000.000 .]
Excluding peak [chr7 64099785 64100002 both.broad_peak_33067] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000.000 .]
Excluding peak [chr7 64100838 64101105 both.broad_peak_33068] which overlaps excluded region [chr7 64090864 64105357 BSR/Beta 1000.000 .]
Excluding peak [chr7 100550706 100551292 both.broad_peak_33481] which overlaps excluded region [chr7 100550640 100551321 Low_mappability_island 1000.000 .]
Excluding peak [chr8 43092778 43097038 both.broad_peak_34830] which overlaps excluded region [chr8 43092737 43097573 Satellite_repeat 1000.000 .]
Excluding peak [chr8 43779474 43779699 both.broad_peak_34831] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .]
Excluding peak [chr8 43794100 43794746 both.broad_peak_34832] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .]
Excluding peak [chr8 43820539 43820739 both.broad_peak_34833] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .]
Excluding peak [chr8 43821992 43822192 both.broad_peak_34834] which overlaps excluded region [chr8 43399486 43843604 centromeric_repeat 1000.000 .]
Excluding peak [chr8 46845309 46845549 both.broad_peak_34835] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000.000 .]
Excluding peak [chr8 46852362 46852861 both.broad_peak_34836] which overlaps excluded region [chr8 46838215 47457541 centromeric_repeat 1000.000 .]
Excluding peak [chr8 100507997 100508253 both.broad_peak_35355] which overlaps excluded region [chr8 100508010 100508287 Low_mappability_island 1000.000 .]
Excluding peak [chr9 45356920 45357350 both.broad_peak_36413] which overlaps excluded region [chr9 45355954 45357644 telomeric_repeat 1000.000 .]
Excluding peak [chr9 45439723 45439970 both.broad_peak_36414] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000.000 .]
Excluding peak [chr9 45441747 45442443 both.broad_peak_36415] which overlaps excluded region [chr9 45435109 45443517 centromeric_repeat 1000.000 .]
Excluding peak [chr9 66494045 66494608 both.broad_peak_36419] which overlaps excluded region [chr9 66494170 66494805 TAR1 1000.000 .]
Excluding peak [chr9 66824178 66824684 both.broad_peak_36421] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000.000 .]
Excluding peak [chr9 66833083 66833633 both.broad_peak_36422] which overlaps excluded region [chr9 66767710 66864329 centromeric_repeat 1000.000 .]
Excluding peak [chr9 67339988 67340844 both.broad_peak_36425] which overlaps excluded region [chr9 67340080 67340661 TAR1 1000.000 .]
Excluding peak [chr9 68377361 68377574 both.broad_peak_36426] which overlaps excluded region [chr9 68376841 68377466 TAR1 1000.000 .]
Excluding peak [chr9 68412991 68414393 both.broad_peak_36427] which overlaps excluded region [chr9 68410775 68435115 Low_mappability_island 1000.000 .]
Excluding peak [chr9 70648541 70648768 both.broad_peak_36436] which overlaps excluded region [chr9 70648394 70648886 TAR1 1000.000 .]
chr1 peak count: 3667
chr2 peak count: 3154
chr3 peak count: 2528
chr4 peak count: 1814
chr5 peak count: 2042
chr6 peak count: 2483
chr7 peak count: 1999
chr8 peak count: 1647
chr9 peak count: 1475
chr10 peak count: 1815
chr11 peak count: 1878
chr12 peak count: 2078
chr13 peak count: 1026
chr14 peak count: 1275
chr15 peak count: 1140
chr16 peak count: 1211
chr17 peak count: 1664
chr18 peak count: 772
chr19 peak count: 1595
chr20 peak count: 864
chr21 peak count: 487
chr22 peak count: 662
Loaded 37276 peaks in 151.226 seconds. (246.493 peaks/second).
New maximum proper pair fragment length: 42 from [SRR891275.608 1123 chr1 569907 57 42M = 569907 42 CACTAACCATATACCAATGATGGCGCGATGTAACACGAGAAA @@@FFFEFFDHFBHIJIEFHJIGGF:CFGEDF?FFHEG@FGG XA:Z:chrM,+9359,42M,1; MD:Z:42 NM:i:0 AS:i:42 XS:i:37 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 330 from [SRR891278.50 1123 chr1 569913 27 50M = 570193 330 NCATATACCAATGATGGCGCGATGTAACACGAGAAAGCACATACCAAGGC #1=DDFFFHHGHHJJJJIJJJGEGHIGGIIIJJJJIIFGGIJHIIJICHH XA:Z:chrM,+9365,50M,2; MD:Z:0C49 NM:i:1 AS:i:49 XS:i:44 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 361 from [SRR891278.227 99 chr1 17047555 60 50M = 17047866 361 GACTCCCTCAAGGGCAGCTGAGAGGGAGGACTCAGGGCACTGGGGAAAGT @CCFFFFFHGHHHJGEHIIJGGJIIJDIIGGEHIIJJBFGGHGEHHIJFC XA:Z:chr1,+144886802,48M2S,2; MD:Z:50 NM:i:0 AS:i:50 XS:i:42 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 562 from [SRR891275.385 163 chr1 43042844 60 50M = 43043356 562 AACCTACAGGAAAAGCTGGTTCAGGAGAAATCTAAAGTTGCTGATGCAGA CCCFFFFFHGGHGJJJJFIEHHHJJGIIJIIJJJJJIHGIJIJGIIJIII MD:Z:50 NM:i:0 AS:i:50 XS:i:0 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 609 from [SRR891275.714 99 chr1 79875808 60 50M = 79876367 609 GGCCCAGCCAAGTTGACACATAAAATAAACTTTCACAATATTGCAGGCAG @@@DDDFFFHAH<EFGGGG@EGECHIDHHAE<<*11?DB?9*?*:336?B MD:Z:50 NM:i:0 AS:i:50 XS:i:30 RG:Z:SRR891275 PG:Z:MarkDuplicates]
New maximum proper pair fragment length: 633 from [SRR891278.342 99 chr2 4228733 60 50M = 4229316 633 CATTTAATGCAAACTAATCTAGCTATTATCATCTGGAGCTGCAGGCTATA CCCFFFFDHHGFHABDIGIIEGIIGCHCHIIIIIGHAEF):CCF;F;BDH MD:Z:50 NM:i:0 AS:i:50 XS:i:20 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
New maximum proper pair fragment length: 649 from [SRR891278.1592 99 chr2 55845390 60 50M = 55845989 649 GTGTGTTGACGATTTCCTGTTTCTTGCAGAGCGATTCACCGTTAAGGCTC ;1=+AB3BB<<?AC?EEAE+3A<B4CC93*:9C)?;DBD?68)?###### MD:Z:33C16 NM:i:1 AS:i:45 XS:i:0 RG:Z:SRR891278 PG:Z:MarkDuplicates-4FB7F45F]
Analyzed 1040 reads in 0.341 seconds (3046.496 reads/second).
ataqv 1.1.1
Operating parameters
====================
Thread limit: 1
Ignoring read groups: yes
Experiment information
======================
Organism: human
Description: a collector for unit tests
URL: https://theparkerlab.org
Reference genome configuration
==============================
Mitochondrial reference: chrM
Autosomal references:
1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19,
20, 21, 22, chr1, chr2, chr3, chr4, chr5, chr6, chr7, chr8, chr9,
chr10, chr11, chr12, chr13, chr14, chr15, chr16, chr17, chr18,
chr19, chr20, chr21, chr22
Read Group
==========
ID: Test collector
Library: Test collector
Sample: Test collector
Description: a library of brutal tests?
Sequencing center:
Sequencing date:
Sequencing platform:
Platform model:
Platform unit:
Flow order:
Key sequence:
Predicted median insert size:
Programs:
Metrics
-------
Read Mapping Metrics
--------------------
Total reads: 1040
Total problems: 194 (18.654%)
Properly paired and mapped reads: 846 (81.346%)
Secondary reads: 20 (1.923%)
Supplementary reads: 0 (0.000%)
Duplicate reads: 313 (30.096% of all reads)
Quality Indicators
------------------
Short to mononucleosomal ratio: 1.783
High quality, nonduplicate, properly paired, uniquely mapped autosomal alignments: 400
as a percentage of autosomal reads: 91.533%
as a percentage of all reads: 38.462%
Paired Read Metrics
-------------------
Paired reads: 1040 (100.000%)
Paired and mapped reads: 864 (83.077%)
FR reads: 846 (81.346154%)
First of pair: 519 (49.904%)
Second of pair: 521 (50.096%)
Forward reads: 529 (50.865%)
Reverse reads: 511 (49.135%)
Forward mate reads: 521 (50.096%)
Reverse mate reads: 519 (49.904%)
Unmapped Read Metrics
---------------------
Unmapped reads: 17 (1.635%)
Unmapped mate reads: 6 (0.577%)
Reads not passing quality controls: 0 (0.000%)
Unpaired reads: 0 (0.000%)
Reads with zero mapping quality: 111 (10.673%)
Aberrant Mapping Metrics
------------------------
RF reads: 15 (1.442308%)
FF reads: 10 (0.961538%)
RR reads: 17 (1.634615%)
Reads that paired and mapped but...
on different chromosomes: 14 (1.346%)
probably too far from their mates: 4 (0.385%) (longest proper fragment seems to be 649)
just not properly: 0 (0.000%)
Autosomal/Mitochondrial Metrics
-------------------------------
Total autosomal reads: 437 (42.019% of all reads)
Total mitochondrial reads: 369 (35.481% of all reads)
Duplicate autosomal reads: 35 (8.009% of all autosomal reads)
Duplicate mitochondrial reads: 185 (50.136% of all mitochondrial reads)
Mapping Quality
---------------
Mean MAPQ: 47.538
Median MAPQ: 60.000
Reads with MAPQ >=...
5: 888 (85.385%)
10: 884 (85.000%)
15: 881 (84.712%)
20: 878 (84.423%)
25: 877 (84.327%)
30: 837 (80.481%)
Peak Metrics
------------
Peak count: 37276
High quality autosomal alignments that overlapped peaks: 115 (28.750% of all high quality autosomal alignments)
Number of high quality autosomal alignments overlapping the top 10,000 peaks:
Top peak: 2 (0.500% of all high quality autosomal alignments)
Top 10 peaks: 20 (5.000% of all high quality autosomal alignments)
Top 100 peaks: 115 (28.750% of all high quality autosomal alignments)
Top 1000 peaks: 115 (28.750% of all high quality autosomal alignments)
Top 10,000 peaks: 115 (28.750% of all high quality autosomal alignments)
Read 411 excluded regions from exclude.dac.bed.gz.
Read 1649 excluded regions from exclude.duke.bed.gz.
Collecting metrics from test.bam.
Logging problematic reads to Test collector.problems.
Loading peaks for read group Test collector from notthere.peaks.gz.
Read 411 excluded regions from exclude.dac.bed.gz.
Read 1649 excluded regions from exclude.duke.bed.gz.
Loading TSS file 'notthere.bed.gz'.
===============================================================================
All tests passed (241 assertions in 54 test cases)
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
dh_auto_install -- prefix=/usr
make -j4 install DESTDIR=/<<BUILDDIR>>/ataqv-1.1.1\+ds/debian/ataqv AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" prefix=/usr
make[2]: Entering directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
Installing to /usr
install -d -m 0755 /<<BUILDDIR>>/ataqv-1.1.1+ds/debian/ataqv/usr/bin
install -d -m 0755 /<<BUILDDIR>>/ataqv-1.1.1+ds/debian/ataqv/usr/bin
install -d -m 0755 /<<BUILDDIR>>/ataqv-1.1.1+ds/debian/ataqv/usr/share/ataqv/web
install -m 0755 build/ataqv /<<BUILDDIR>>/ataqv-1.1.1+ds/debian/ataqv/usr/bin
for f in src/scripts/make_ataqv_pipeline src/scripts/mkarv src/scripts/srvarv src/scripts/run_ataqv_example; do sed -e 's/{{VERSION}}/1.1.1/g' $f > build/$(basename $f); install -m 0755 build/$(basename $f) /<<BUILDDIR>>/ataqv-1.1.1+ds/debian/ataqv/usr/bin; done
cp -a src/web/* /<<BUILDDIR>>/ataqv-1.1.1+ds/debian/ataqv/usr/share/ataqv/web
find /<<BUILDDIR>>/ataqv-1.1.1+ds/debian/ataqv/usr/share/ataqv/web -type d -exec chmod 755 {} \;
find /<<BUILDDIR>>/ataqv-1.1.1+ds/debian/ataqv/usr/share/ataqv/web -type f -exec chmod 644 {} \;
make[2]: Leaving directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installexamples -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
help2man --no-info --name="QC metrics for ATAC-seq data" build/ataqv > debian/ataqv.1
help2man --no-info --name="Turns ataqv results into a web app" src/scripts/mkarv > debian/mkarv.1
help2man --no-info --name="serve an instance of the ataqv web results viewer" --version-string 1.1.1+ds src/scripts/srvarv > debian/srvarv.1
dh_installman
make[1]: Leaving directory '/<<BUILDDIR>>/ataqv-1.1.1+ds'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/ataqv/usr/bin/ataqv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/ataqv/usr/lib/ataqv/run_ataqv_tests contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'ataqv-dbgsym' in '../ataqv-dbgsym_1.1.1+ds-2_armhf.deb'.
dpkg-deb: building package 'ataqv' in '../ataqv_1.1.1+ds-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../ataqv_1.1.1+ds-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-04-06T09:21:46Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
ataqv_1.1.1+ds-2_armhf.changes:
-------------------------------
Format: 1.8
Date: Fri, 03 Apr 2020 20:48:52 +0200
Source: ataqv
Binary: ataqv ataqv-dbgsym
Architecture: armhf
Version: 1.1.1+ds-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
ataqv - ATAC-seq QC and visualization
Changes:
ataqv (1.1.1+ds-2) unstable; urgency=medium
.
* Team upload.
* Remove trailing whitespace in debian/copyright (routine-update)
* Add salsa-ci file (routine-update)
* Rules-Requires-Root: no (routine-update)
* Set upstream metadata fields: Bug-Database, Bug-Submit.
Checksums-Sha1:
bd52d4b65f2940a5a1f9aa30b448c0d592a3113e 7508800 ataqv-dbgsym_1.1.1+ds-2_armhf.deb
3e218bc8ab4c574314c9b032fbc095d8299ba7a8 8038 ataqv_1.1.1+ds-2_armhf.buildinfo
4e495cc1c14090bc41f20b2722a3b43e9671c2a3 3316788 ataqv_1.1.1+ds-2_armhf.deb
Checksums-Sha256:
a78e0537d72bd09971dd66b565a5fcdf8c24c046de04ddae9c54781c0491d70f 7508800 ataqv-dbgsym_1.1.1+ds-2_armhf.deb
68736b9272dc56ef9e910c10575f2135d93ace1cef2ff9b81d5720c6769adab7 8038 ataqv_1.1.1+ds-2_armhf.buildinfo
1dfaffe623eb831bd2161ff2280b91ad496cdd03b0721df496feced0522f17f5 3316788 ataqv_1.1.1+ds-2_armhf.deb
Files:
b3a26c00b4c5c76ba99366b8c608d02b 7508800 debug optional ataqv-dbgsym_1.1.1+ds-2_armhf.deb
db17803aa9c192161c5eba81a2adf735 8038 science optional ataqv_1.1.1+ds-2_armhf.buildinfo
724665e93b4a15113fb79201103c0c90 3316788 science optional ataqv_1.1.1+ds-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
ataqv-dbgsym_1.1.1+ds-2_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 7508800 bytes: control archive=640 bytes.
410 bytes, 12 lines control
297 bytes, 3 lines md5sums
Package: ataqv-dbgsym
Source: ataqv
Version: 1.1.1+ds-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 7880
Depends: ataqv (= 1.1.1+ds-2)
Section: debug
Priority: optional
Description: debug symbols for ataqv
Build-Ids: 5fb30a4192b248cb5e77036243be77a55ed288b8 975e6f4da6c9284aada54c4d29daeebcd881c05a
drwxr-xr-x root/root 0 2020-04-03 18:48 ./
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/lib/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/lib/debug/.build-id/5f/
-rw-r--r-- root/root 5362040 2020-04-03 18:48 ./usr/lib/debug/.build-id/5f/b30a4192b248cb5e77036243be77a55ed288b8.debug
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/lib/debug/.build-id/97/
-rw-r--r-- root/root 2014872 2020-04-03 18:48 ./usr/lib/debug/.build-id/97/5e6f4da6c9284aada54c4d29daeebcd881c05a.debug
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 677780 2020-04-03 18:48 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ataqv.debug
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/doc/ataqv-dbgsym -> ataqv
ataqv_1.1.1+ds-2_armhf.deb
--------------------------
new Debian package, version 2.0.
size 3316788 bytes: control archive=1768 bytes.
927 bytes, 16 lines control
2422 bytes, 32 lines md5sums
Package: ataqv
Version: 1.1.1+ds-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 6191
Depends: libboost-chrono1.67.0, libboost-filesystem1.67.0, libboost-iostreams1.67.0, libc6 (>= 2.4), libgcc-s1 (>= 3.5), libhts3 (>= 1.10), libncurses6 (>= 6), libstdc++6 (>= 9), libjs-jquery, libjs-jquery-datatables, libjs-jquery-datatables-extensions, fonts-font-awesome, node-normalize.css, python3, node-d3
Suggests: picard-tools, samtools, macs, wget
Section: science
Priority: optional
Homepage: https://github.com/ParkerLab/ataqv/
Description: ATAC-seq QC and visualization
A toolkit for measuring and comparing ATAC-seq results, made in the
Parker lab at the University of Michigan. They wrote it to help
understand how well their ATAC-seq assays had worked, and to make it
easier to spot differences that might be caused by library prep or
sequencing.
drwxr-xr-x root/root 0 2020-04-03 18:48 ./
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/bin/
-rwxr-xr-x root/root 419756 2020-04-03 18:48 ./usr/bin/ataqv
-rwxr-xr-x root/root 3020 2020-04-03 18:48 ./usr/bin/make_ataqv_pipeline
-rwxr-xr-x root/root 35621 2020-04-03 18:48 ./usr/bin/mkarv
-rwxr-xr-x root/root 1634 2020-04-03 18:48 ./usr/bin/run_ataqv_example
-rwxr-xr-x root/root 1142 2020-04-03 18:48 ./usr/bin/srvarv
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/lib/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/lib/ataqv/
-rwxr-xr-x root/root 947908 2020-04-03 18:48 ./usr/lib/ataqv/run_ataqv_tests
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/ataqv/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/css/
-rw-r--r-- root/root 18865 2020-01-09 20:46 ./usr/share/ataqv/web/css/ataqv.css
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/css/datatables.buttons.min.css -> ../../../javascript/jquery-datatables-extensions/Buttons/css/buttons.dataTables.min.css
-rw-r--r-- root/root 3362 2020-01-09 20:46 ./usr/share/ataqv/web/css/datatables.fontawesome.css
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/css/datatables.min.css -> ../../../javascript/jquery-datatables/css/jquery.dataTables.min.css
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/css/font-awesome.min.css -> ../../../fonts-font-awesome/css/font-awesome.min.css
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/css/normalize.css -> ../../../javascript/normalize.css/normalize.css
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/fonts/
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/fonts/FontAwesome.otf -> ../../../fonts-font-awesome/fonts/FontAwesome.otf
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/fonts/fontawesome-webfont.eot -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.eot
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/fonts/fontawesome-webfont.svg -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.svg
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/fonts/fontawesome-webfont.ttf -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.ttf
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/fonts/fontawesome-webfont.woff -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.woff
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/fonts/fontawesome-webfont.woff2 -> ../../../fonts-font-awesome/fonts/fontawesome-webfont.woff2
-rw-r--r-- root/root 34052 2020-01-09 20:46 ./usr/share/ataqv/web/fonts/sourcesanspro-regular.woff
-rw-r--r-- root/root 28724 2020-01-09 20:46 ./usr/share/ataqv/web/fonts/sourcesanspro-regularit.woff
-rw-r--r-- root/root 33848 2020-01-09 20:46 ./usr/share/ataqv/web/fonts/sourcesanspro-semibold.woff
-rw-r--r-- root/root 28624 2020-01-09 20:46 ./usr/share/ataqv/web/fonts/sourcesanspro-semiboldit.woff
-rw-r--r-- root/root 50870 2020-04-03 18:48 ./usr/share/ataqv/web/index.html
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/js/
-rw-r--r-- root/root 69005 2020-01-09 20:46 ./usr/share/ataqv/web/js/ataqv.js
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/js/buttons.colVis.min.js -> ../../../javascript/jquery-datatables-extensions/Buttons/js/buttons.colVis.min.js
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/js/buttons.html5.min.js -> ../../../javascript/jquery-datatables-extensions/Buttons/js/buttons.html5.min.js
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/js/buttons.print.min.js -> ../../../javascript/jquery-datatables-extensions/Buttons/js/buttons.print.min.js
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/js/d3.min.js -> ../../../nodejs/d3/dist/d3.min.js
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/js/dataTables.buttons.min.js -> ../../../javascript/jquery-datatables-extensions/Buttons/js/dataTables.buttons.min.js
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/js/dataTables.responsive.min.js -> ../../../javascript/jquery-datatables-extensions/Responsive/js/dataTables.responsive.min.js
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/js/jquery.dataTables.min.js -> ../../../javascript/jquery-datatables/jquery.dataTables.min.js
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/js/jquery.min.js -> ../../../javascript/jquery/jquery.min.js
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/js/jszip.min.js -> ../../../javascript/jquery-datatables-extensions/JSZip/jszip.min.js
lrwxrwxrwx root/root 0 2020-04-03 18:48 ./usr/share/ataqv/web/js/pdfmake.min.js -> ../../../javascript/jquery-datatables-extensions/pdfmake/build/pdfmake.min.js
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/doc/ataqv/
-rw-r--r-- root/root 4381 2020-01-09 20:46 ./usr/share/doc/ataqv/README.rst.gz
-rw-r--r-- root/root 338 2020-04-03 18:48 ./usr/share/doc/ataqv/changelog.Debian.gz
-rw-r--r-- root/root 8547 2020-04-03 18:48 ./usr/share/doc/ataqv/copyright
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/doc/ataqv/examples/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/doc/ataqv/examples/testdata/
-rw-r--r-- root/root 37149 2020-01-09 20:46 ./usr/share/doc/ataqv/examples/testdata/SRR891275.bam
-rw-r--r-- root/root 773256 2020-01-09 20:46 ./usr/share/doc/ataqv/examples/testdata/SRR891275.bam.bai
-rw-r--r-- root/root 418285 2020-04-03 18:48 ./usr/share/doc/ataqv/examples/testdata/SRR891275.peaks.gz
-rw-r--r-- root/root 37198 2020-01-09 20:46 ./usr/share/doc/ataqv/examples/testdata/SRR891278.bam
-rw-r--r-- root/root 952573 2020-04-03 18:48 ./usr/share/doc/ataqv/examples/testdata/SRR891278.peaks.gz
-rw-r--r-- root/root 4708 2020-04-03 18:48 ./usr/share/doc/ataqv/examples/testdata/exclude.dac.bed.gz
-rw-r--r-- root/root 17130 2020-04-03 18:48 ./usr/share/doc/ataqv/examples/testdata/exclude.duke.bed.gz
-rw-r--r-- root/root 288924 2020-04-03 18:48 ./usr/share/doc/ataqv/examples/testdata/hg19.tss.refseq.bed.gz
-rwxr-xr-x root/root 2617 2020-01-09 20:46 ./usr/share/doc/ataqv/examples/testdata/mktd.sh
-rw-r--r-- root/root 72177 2020-01-09 20:46 ./usr/share/doc/ataqv/examples/testdata/test.bam
-rw-r--r-- root/root 1017208 2020-01-09 20:46 ./usr/share/doc/ataqv/examples/testdata/test.bam.bai
-rw-r--r-- root/root 968461 2020-04-03 18:48 ./usr/share/doc/ataqv/examples/testdata/test.peaks.gz
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/man/
drwxr-xr-x root/root 0 2020-04-03 18:48 ./usr/share/man/man1/
-rw-r--r-- root/root 1933 2020-04-03 18:48 ./usr/share/man/man1/ataqv.1.gz
-rw-r--r-- root/root 1607 2020-04-03 18:48 ./usr/share/man/man1/mkarv.1.gz
-rw-r--r-- root/root 379 2020-04-03 18:48 ./usr/share/man/man1/srvarv.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 129072
Build-Time: 1084
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1337
Job: ataqv_1.1.1+ds-2
Machine Architecture: armhf
Package: ataqv
Package-Time: 2476
Source-Version: 1.1.1+ds-2
Space: 129072
Status: successful
Version: 1.1.1+ds-2
--------------------------------------------------------------------------------
Finished at 2020-04-06T09:21:46Z
Build needed 00:41:16, 129072k disc space