ampliconnoise →
1.29-8+b1 →
armhf → 2020-05-13 22:39:31
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| ampliconnoise 1.29-8+b1 (armhf) Wed, 13 May 2020 22:32:25 +0000 |
+==============================================================================+
Package: ampliconnoise
Version: 1.29-8+b1
Source Version: 1.29-8
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-d354875a-015b-4b0a-a5a6-469581258c48' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 11s (2323 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ampliconnoise' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/ampliconnoise.git
Please use:
git clone https://salsa.debian.org/med-team/ampliconnoise.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1414 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main ampliconnoise 1.29-8 (dsc) [2045 B]
Get:2 http://172.17.0.1/private bullseye-staging/main ampliconnoise 1.29-8 (tar) [1403 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main ampliconnoise 1.29-8 (diff) [8796 B]
Fetched 1414 kB in 0s (2839 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/ampliconnoise-M01HjF/ampliconnoise-1.29' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ampliconnoise-M01HjF' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-4sVreu/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-4sVreu/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-4sVreu/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (7531 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 12 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (59.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12233 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), libgsl-dev, libopenmpi-dev
Filtered Build-Depends: debhelper (>= 11~), libgsl-dev, libopenmpi-dev
dpkg-deb: building package 'sbuild-build-depends-ampliconnoise-dummy' in '/<<BUILDDIR>>/resolver-4sVreu/apt_archive/sbuild-build-depends-ampliconnoise-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-ampliconnoise-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ Sources [510 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ Packages [591 B]
Fetched 2434 B in 0s (9175 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install ampliconnoise build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gcc-10-base gettext
gettext-base gfortran-9 groff-base ibverbs-providers intltool-debian
libarchive-zip-perl libatomic1 libbsd0 libcbor0 libcc1-0 libcroco3
libdebhelper-perl libedit2 libelf1 libevent-2.1-7 libevent-core-2.1-7
libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libfido2-1 libfile-stripnondeterminism-perl
libgcc-s1 libgcc1 libgfortran-9-dev libgfortran5 libglib2.0-0 libgomp1
libgsl-dev libgsl25 libgslcblas0 libgssapi-krb5-2 libhwloc-dev
libhwloc-plugins libhwloc15 libibverbs-dev libibverbs1 libicu63 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 libltdl-dev libltdl7 libmagic-mgc
libmagic1 libnl-3-200 libnl-3-dev libnl-route-3-200 libnl-route-3-dev
libnuma-dev libnuma1 libopenmpi-dev libopenmpi3 libpciaccess0 libpipeline1
libpmix2 librdmacm1 libsigsegv2 libssl1.1 libstdc++6 libsub-override-perl
libtinfo5 libtool libubsan1 libuchardet0 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db ocl-icd-libopencl1
openmpi-bin openmpi-common openssh-client po-debconf sensible-utils
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev gfortran-9-doc
libcoarrays-dev groff gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info
| gsl-ref-html krb5-doc krb5-user libtool-doc openmpi-doc pciutils gcj-jdk
m4-doc apparmor less www-browser opencl-icd gfortran | fortran-compiler
keychain libpam-ssh monkeysphere ssh-askpass libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libcoarrays-openmpi-dev xauth
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
gfortran-9 groff-base ibverbs-providers intltool-debian libarchive-zip-perl
libbsd0 libcbor0 libcroco3 libdebhelper-perl libedit2 libelf1 libevent-2.1-7
libevent-core-2.1-7 libevent-dev libevent-extra-2.1-7 libevent-openssl-2.1-7
libevent-pthreads-2.1-7 libfido2-1 libfile-stripnondeterminism-perl
libgfortran-9-dev libgfortran5 libglib2.0-0 libgsl-dev libgsl25 libgslcblas0
libgssapi-krb5-2 libhwloc-dev libhwloc-plugins libhwloc15 libibverbs-dev
libibverbs1 libicu63 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200 libnl-3-dev
libnl-route-3-200 libnl-route-3-dev libnuma-dev libnuma1 libopenmpi-dev
libopenmpi3 libpciaccess0 libpipeline1 libpmix2 librdmacm1 libsigsegv2
libssl1.1 libsub-override-perl libtinfo5 libtool libuchardet0 libx11-6
libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxml2 libxnvctrl0 m4 man-db
ocl-icd-libopencl1 openmpi-bin openmpi-common openssh-client po-debconf
sbuild-build-depends-ampliconnoise-dummy sensible-utils zlib1g-dev
The following packages will be upgraded:
gcc-10-base libatomic1 libcc1-0 libgcc-s1 libgcc1 libgomp1 libstdc++6
libubsan1
8 upgraded, 88 newly installed, 0 to remove and 4 not upgraded.
Need to get 40.2 MB of archives.
After this operation, 139 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4sVreu/apt_archive ./ sbuild-build-depends-ampliconnoise-dummy 0.invalid.0 [876 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.1.0-1+rpi1 [8180 B]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.1.0-1+rpi1 [115 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.1.0-1+rpi1 [83.2 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.1.0-1+rpi1 [196 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.1.0-1+rpi1 [36.1 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libgcc1 armhf 1:10.1.0-1+rpi1 [36.0 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.1.0-1+rpi1 [31.7 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.1.0-1+rpi1 [408 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libedit2 armhf 3.1-20191231-1 [79.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libcbor0 armhf 0.5.0+dfsg-2 [19.5 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libfido2-1 armhf 1.4.0-1 [43.7 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7+rpi1 [61.5 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7+rpi1 [112 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7+rpi1 [318 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7+rpi1 [135 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf openssh-client armhf 1:8.2p1-4 [781 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13 [184 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.0-1 [14.8 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.2-1 [1158 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13 [1002 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-1+rpi1 [232 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.3.0-11+rpi1 [278 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.3.0-11+rpi1 [8107 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-200 armhf 3.4.0-1 [55.0 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-200 armhf 3.4.0-1 [132 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libibverbs1 armhf 29.0-1 [47.5 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf ibverbs-providers armhf 29.0-1 [24.2 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libevent-2.1-7 armhf 2.1.11-stable-1 [165 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libevent-core-2.1-7 armhf 2.1.11-stable-1 [124 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libevent-extra-2.1-7 armhf 2.1.11-stable-1 [98.7 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libevent-pthreads-2.1-7 armhf 2.1.11-stable-1 [54.7 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libevent-openssl-2.1-7 armhf 2.1.11-stable-1 [59.7 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libevent-dev armhf 2.1.11-stable-1 [279 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libgsl25 armhf 2.6+dfsg-2 [753 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libgsl-dev armhf 2.6+dfsg-2 [950 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libhwloc15 armhf 2.2.0+dfsg-3 [113 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libnuma1 armhf 2.0.12-1 [22.5 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libnuma-dev armhf 2.0.12-1 [35.6 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libltdl7 armhf 2.4.6-14 [388 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libltdl-dev armhf 2.4.6-14 [159 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-dev armhf 2.2.0+dfsg-3 [174 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libpciaccess0 armhf 0.14-1 [51.0 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.9-2 [298 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.9-2 [692 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libxnvctrl0 armhf 440.82-1 [25.2 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf ocl-icd-libopencl1 armhf 2.2.12-4 [36.0 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libhwloc-plugins armhf 2.2.0+dfsg-3 [19.0 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libnl-3-dev armhf 3.4.0-1 [92.4 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libnl-route-3-dev armhf 3.4.0-1 [145 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libibverbs-dev armhf 29.0-1 [199 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libpmix2 armhf 3.1.5-1 [377 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf librdmacm1 armhf 29.0-1 [58.2 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi3 armhf 4.0.3-6+rpi1 [1690 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf openmpi-common all 4.0.3-6+rpi1 [170 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf openmpi-bin armhf 4.0.3-6+rpi1 [185 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libopenmpi-dev armhf 4.0.3-6+rpi1 [923 kB]
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Setting up libnl-route-3-200:armhf (3.4.0-1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libevent-dev (2.1.11-stable-1) ...
Setting up libgssapi-krb5-2:armhf (1.17-7+rpi1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.8.0-1) ...
Setting up dwz (0.13-5) ...
Setting up libnl-3-dev:armhf (3.4.0-1) ...
Setting up groff-base (1.22.4-5) ...
Setting up libx11-6:armhf (2:1.6.9-2) ...
Setting up automake (1:1.16.2-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libibverbs1:armhf (29.0-1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up gfortran-9 (9.3.0-11+rpi1) ...
Setting up ibverbs-providers:armhf (29.0-1) ...
Setting up openssh-client (1:8.2p1-4) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libxnvctrl0:armhf (440.82-1) ...
Setting up libnl-route-3-dev:armhf (3.4.0-1) ...
Setting up libltdl-dev:armhf (2.4.6-14) ...
Setting up libhwloc-dev:armhf (2.2.0+dfsg-3) ...
Setting up librdmacm1:armhf (29.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up libibverbs-dev:armhf (29.0-1) ...
Setting up libhwloc-plugins:armhf (2.2.0+dfsg-3) ...
Setting up libpmix2:armhf (3.1.5-1) ...
Setting up libopenmpi3:armhf (4.0.3-6+rpi1) ...
Setting up openmpi-bin (4.0.3-6+rpi1) ...
update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode
update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode
Setting up libopenmpi-dev:armhf (4.0.3-6+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/arm-linux-gnueabihf/mpi (mpi-arm-linux-gnueabihf) in auto mode
Setting up debhelper (13) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-ampliconnoise-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-5+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-11+rpi1 gcc-9_9.3.0-11+rpi1 libc6-dev_2.30-7+rpi1 libstdc++-9-dev_9.3.0-11+rpi1 libstdc++6_10.1.0-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.0 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-5+rpi1 binutils-arm-linux-gnueabihf_2.34-5+rpi1 binutils-common_2.34-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.35.1-2 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-11+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13 debianutils_4.9.1 dh-autoreconf_19 dh-strip-nondeterminism_1.8.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.1-2 file_1:5.38-4 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-11+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10.1.0-1+rpi1 gcc-9_9.3.0-11+rpi1 gcc-9-base_9.3.0-11+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gfortran-9_9.3.0-11+rpi1 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 ibverbs-providers_29.0-1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libapt-pkg6.0_2.1.0 libarchive-zip-perl_1.68-1 libasan5_9.3.0-11+rpi1 libassuan0_2.5.3-7 libatomic1_10.1.0-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-5+rpi1 libblkid1_2.35.1-2 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-7+rpi1 libc-dev-bin_2.30-7+rpi1 libc6_2.30-7+rpi1 libc6-dev_2.30-7+rpi1 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.33-1 libcap2-bin_1:2.33-1 libcbor0_0.5.0+dfsg-2 libcc1-0_10.1.0-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-5+rpi1 libctf0_2.34-5+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.251 libdebhelper-perl_13 libdpkg-perl_1.19.7 libedit2_3.1-20191231-1 libelf1_0.176-1.1 libevent-2.1-7_2.1.11-stable-1 libevent-core-2.1-7_2.1.11-stable-1 libevent-dev_2.1.11-stable-1 libevent-extra-2.1-7_2.1.11-stable-1 libevent-openssl-2.1-7_2.1.11-stable-1 libevent-pthreads-2.1-7_2.1.11-stable-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.1-2 libffi7_3.3-4 libfido2-1_1.4.0-1 libfile-stripnondeterminism-perl_1.8.0-1 libgcc-9-dev_9.3.0-11+rpi1 libgcc-s1_10.1.0-1+rpi1 libgcc1_1:10.1.0-1+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.3.0-11+rpi1 libgfortran5_10.1.0-1+rpi1 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10.1.0-1+rpi1 libgpg-error0_1.37-1 libgsl-dev_2.6+dfsg-2 libgsl25_2.6+dfsg-2 libgslcblas0_2.6+dfsg-2 libgssapi-krb5-2_1.17-7+rpi1 libhogweed5_3.5.1+really3.5.1-2 libhwloc-dev_2.2.0+dfsg-3 libhwloc-plugins_2.2.0+dfsg-3 libhwloc15_2.2.0+dfsg-3 libibverbs-dev_29.0-1 libibverbs1_29.0-1 libicu63_63.2-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libk5crypto3_1.17-7+rpi1 libkeyutils1_1.6.1-2 libkrb5-3_1.17-7+rpi1 libkrb5support0_1.17-7+rpi1 libksba8_1.3.5-2 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 libltdl-dev_2.4.6-14 libltdl7_2.4.6-14 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-4 libmagic1_1:5.38-4 libmount1_2.35.1-2 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnl-3-200_3.4.0-1 libnl-3-dev_3.4.0-1 libnl-route-3-200_3.4.0-1 libnl-route-3-dev_3.4.0-1 libnpth0_1.6-1 libnuma-dev_2.0.12-1 libnuma1_2.0.12-1 libopenmpi-dev_4.0.3-6+rpi1 libopenmpi3_4.0.3-6+rpi1 libp11-kit0_0.23.20-1 libpam-cap_1:2.33-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpciaccess0_0.14-1 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libpmix2_3.1.5-1 librdmacm1_29.0-1 libreadline7_7.0-5 libreadline8_8.0-4 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libsigsegv2_2.12-2 libsmartcols1_2.35.1-2 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-11+rpi1 libstdc++6_10.1.0-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.5-1+rpi1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-1+rpi1 libuchardet0_0.0.6-3 libudev1_245.5-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.35.1-2 libx11-6_2:1.6.9-2 libx11-data_2:1.6.9-2 libxau6_1:1.0.8-1+b2 libxcb1_1.14-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxml2_2.9.10+dfsg-5 libxnvctrl0_440.82-1 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mount_2.35.1-2 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 ocl-icd-libopencl1_2.2.12-4 openmpi-bin_4.0.3-6+rpi1 openmpi-common_4.0.3-6+rpi1 openssh-client_1:8.2p1-4 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-4 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-ampliconnoise-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.35.1-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Oct 19 12:50:35 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ampliconnoise_1.29-8.dsc
dpkg-source: info: extracting ampliconnoise in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking ampliconnoise_1.29.orig.tar.gz
dpkg-source: info: unpacking ampliconnoise_1.29-8.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-path-for-data.patch
dpkg-source: info: applying fix-segfault-on-non-fasta-input.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying clang-ftbfs.patch
dpkg-source: info: applying mayhem.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.29-8+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-d354875a-015b-4b0a-a5a6-469581258c48
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package ampliconnoise
dpkg-buildpackage: info: source version 1.29-8+b1
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
(cd FCluster && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/FCluster'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *o FCluster
make[2]: Leaving directory '/<<PKGBUILDDIR>>/FCluster'
(cd FastaUnique && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/FastaUnique'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o FastaUnique
make[2]: Leaving directory '/<<PKGBUILDDIR>>/FastaUnique'
(cd NDist && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/NDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o NDist
make[2]: Leaving directory '/<<PKGBUILDDIR>>/NDist'
(cd PyroDist && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroDist
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroDist'
(cd PyroNoise && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroNoise
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoise'
(cd PyroNoiseM && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoiseM'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroNoiseM
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoiseM'
(cd PyroNoiseA && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoiseA'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroNoiseA
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoiseA'
(cd SeqDist && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SeqDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SeqDist
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SeqDist'
(cd SeqNoise && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SeqNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SeqNoise
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SeqNoise'
(cd SplitClusterEven && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SplitClusterEven'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SplitClusterEven
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SplitClusterEven'
(cd SplitClusterClust && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SplitClusterClust'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SplitClusterClust
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SplitClusterClust'
(cd Perseus && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/Perseus'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o Perseus
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Perseus'
(cd PerseusD && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PerseusD'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PerseusD
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PerseusD'
(cd bin && rm -rf *)
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f *.o
rm -f *.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4 "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>'
(cd FCluster && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/FCluster'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c FCluster.c
FCluster.c:223:1: warning: return type defaults to 'int' [-Wimplicit-int]
223 | UpdateMinCacheForMarkedRows(struct t_Min* asMin,float** aafDistMatrix,int nN)
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
FCluster.c: In function 'UpdateMinCacheForMarkedRows':
FCluster.c:230:13: warning: implicit declaration of function 'UpdateMinCacheForRow'; did you mean 'UpdateMinCacheForMarkedRows'? [-Wimplicit-function-declaration]
230 | UpdateMinCacheForRow(asMin,i,aafDistMatrix);
| ^~~~~~~~~~~~~~~~~~~~
| UpdateMinCacheForMarkedRows
FCluster.c: At top level:
FCluster.c:237:1: warning: return type defaults to 'int' [-Wimplicit-int]
237 | UpdateMinCacheForRow(struct t_Min* asMin,int i,float** aafDistMatrix)
| ^~~~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o FCluster FCluster.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/FCluster'
(cd FastaUnique && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/FastaUnique'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c FastaUnique.c
linking...
cc -Wl,-z,relro -Wl,-z,now -o FastaUnique FastaUnique.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/FastaUnique'
(cd NDist && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/NDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c NDist.c
NDist.c: In function 'readData':
NDist.c:707:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
707 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
| ^~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o NDist NDist.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/NDist'
(cd PyroDist && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroDist.c
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroDist PyroDist.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroDist'
(cd PyroNoise && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroNoise.c
PyroNoise.c: In function 'writeCentroids':
PyroNoise.c:2073:21: warning: too many arguments for format [-Wformat-extra-args]
2073 | fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroNoise PyroNoise.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoise'
(cd SeqDist && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SeqDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SeqDist.c
SeqDist.c: In function 'readData':
SeqDist.c:854:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
854 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
| ^~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o SeqDist SeqDist.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SeqDist'
(cd PyroNoiseM && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoiseM'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroNoiseM.c
PyroNoiseM.c: In function 'writeCentroids':
PyroNoiseM.c:2139:21: warning: too many arguments for format [-Wformat-extra-args]
2139 | fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroNoiseM PyroNoiseM.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoiseM'
(cd PyroNoiseA && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoiseA'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -O3 -c PyroNoiseA.c
linking...
mpicc -o PyroNoiseA PyroNoiseA.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoiseA'
(cd SeqNoise && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SeqNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SeqNoise.c
SeqNoise.c: In function 'main':
SeqNoise.c:120:25: warning: too many arguments for format [-Wformat-extra-args]
120 | if(bVerbose){printf("%d: Broadcast distance matrix\n", rank, nSize, nPacket); fflush(stdout);}
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SeqNoise.c: In function 'readData':
SeqNoise.c:652:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
652 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
| ^~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o SeqNoise SeqNoise.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SeqNoise'
(cd SplitClusterEven && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SplitClusterEven'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SplitClusterEven.c
SplitClusterEven.c: In function 'readMapFile':
SplitClusterEven.c:681:19: warning: too many arguments for format [-Wformat-extra-args]
681 | fprintf(stderr, "Failed to open map file\n", szMapFile);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c: In function 'main':
SplitClusterEven.c:89:28: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
89 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:89:5: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024
89 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c:90:27: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
90 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:90:5: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024
90 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c:91:28: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
91 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:91:5: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024
91 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c:142:30: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
142 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:142:7: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024
142 | sprintf(szTreeFile,"%s/%s%s",szDir,szDir,TREE_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c:143:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
143 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:143:7: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024
143 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterEven.c:144:30: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
144 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX);
| ^~ ~~~~~
SplitClusterEven.c:144:7: note: 'sprintf' output between 7 and 2053 bytes into a destination of size 1024
144 | sprintf(szListFile,"%s/%s%s",szDir,szDir,LIST_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o SplitClusterEven SplitClusterEven.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SplitClusterEven'
(cd SplitClusterClust && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SplitClusterClust'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SplitClusterClust.c
SplitClusterClust.c: In function 'readMapFile':
SplitClusterClust.c:316:19: warning: too many arguments for format [-Wformat-extra-args]
316 | fprintf(stderr, "Failed to open map file\n", szMapFile);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterClust.c: In function 'main':
SplitClusterClust.c:52:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
52 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~ ~~~~~
SplitClusterClust.c:52:7: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024
52 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SplitClusterClust.c:88:29: warning: '%s' directive writing up to 1023 bytes into a region of size between 0 and 1023 [-Wformat-overflow=]
88 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~ ~~~~~
SplitClusterClust.c:88:7: note: 'sprintf' output between 6 and 2052 bytes into a destination of size 1024
88 | sprintf(szDatFile,"%s/%s%s",szDir,szDir,DAT_SUFFIX);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
gcc -Wl,-z,relro -Wl,-z,now -o SplitClusterClust SplitClusterClust.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SplitClusterClust'
(cd Perseus && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/Perseus'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c Perseus.c
Perseus.c: In function 'readData':
Perseus.c:856:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
856 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
| ^~~~~~~
Perseus.c: In function 'calcLoonIndex':
Perseus.c:1637:34: warning: '%s' directive writing up to 65535 bytes into a region of size 65524 [-Wformat-overflow=]
1637 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE);
| ^~ ~~~~~~~~~~~
Perseus.c:1637:3: note: 'sprintf' output between 28 and 131098 bytes into a destination of size 65536
1637 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o Perseus Perseus.o -lm -lgsl -lgslcblas
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Perseus'
(cd PerseusD && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PerseusD'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PerseusD.c
PerseusD.c: In function 'readData':
PerseusD.c:908:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
908 | ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
| ^~~~~~~
PerseusD.c: In function 'calcLoonIndex':
PerseusD.c:1648:34: warning: '%s' directive writing up to 65535 bytes into a region of size 65524 [-Wformat-overflow=]
1648 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE);
| ^~ ~~~~~~~~~~~
PerseusD.c:1648:3: note: 'sprintf' output between 28 and 131098 bytes into a destination of size 65536
1648 | sprintf(szCommand,"mafft-linsi %s > %s 2> %s",szTempFasta,szTempAlign, TEMP_ERROR_FILE);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o PerseusD PerseusD.o -lm -lgsl -lgslcblas
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PerseusD'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make install
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cp FCluster/FCluster bin
cp FastaUnique/FastaUnique bin
cp NDist/NDist bin
cp PyroDist/PyroDist bin
cp PyroNoise/PyroNoise bin
cp PyroNoiseM/PyroNoiseM bin
cp PyroNoiseA/PyroNoiseA bin
cp SeqDist/SeqDist bin
cp SeqNoise/SeqNoise bin
cp SplitClusterEven/SplitClusterEven bin
cp SplitClusterClust/SplitClusterClust bin
cp Perseus/Perseus bin
cp PerseusD/PerseusD bin
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install bin/* /usr/bin
dh_install Data/* /usr/share/ampliconnoise/Data/
dh_install Scripts/* /usr/share/ampliconnoise/Scripts/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
debian/ampliconnoise.pod
pod2man -c AmpliconNoise Documentation debian/ampliconnoise.pod > ampliconnoise.1
dh_installman ampliconnoise.1
( for f in bin/* ; do \
ln -s ampliconnoise.1 debian/ampliconnoise/usr/share/man/man1/`basename "$f"`.1 ; \
done )
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ampliconnoise/usr/bin/PyroNoiseM debian/ampliconnoise/usr/bin/SplitClusterClust debian/ampliconnoise/usr/bin/PyroNoise debian/ampliconnoise/usr/bin/SeqDist debian/ampliconnoise/usr/bin/PerseusD debian/ampliconnoise/usr/bin/SplitClusterEven debian/ampliconnoise/usr/bin/FCluster debian/ampliconnoise/usr/bin/Perseus debian/ampliconnoise/usr/bin/PyroDist debian/ampliconnoise/usr/bin/NDist debian/ampliconnoise/usr/bin/SeqNoise debian/ampliconnoise/usr/bin/FastaUnique were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package ampliconnoise: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package ampliconnoise: substitution variable ${perl:Depends} unused, but is defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'ampliconnoise-dbgsym' in '../ampliconnoise-dbgsym_1.29-8+b1_armhf.deb'.
dpkg-deb: building package 'ampliconnoise' in '../ampliconnoise_1.29-8+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../ampliconnoise_1.29-8+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-05-13T22:39:27Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
ampliconnoise_1.29-8+b1_armhf.changes:
--------------------------------------
Format: 1.8
Date: Fri, 19 Oct 2018 14:20:25 +0200
Source: ampliconnoise (1.29-8)
Binary: ampliconnoise ampliconnoise-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 1.29-8+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
ampliconnoise - removal of noise from 454 sequenced PCR amplicons
Changes:
ampliconnoise (1.29-8+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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16df1853ee1e12bf07b35b1188012306ad4bc598 443284 ampliconnoise_1.29-8+b1_armhf.deb
Checksums-Sha256:
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Files:
dbe54285a5581e66c699629b9e24501f 325688 debug optional ampliconnoise-dbgsym_1.29-8+b1_armhf.deb
e67decd505400f0d44e95de9d15ab694 6657 science optional ampliconnoise_1.29-8+b1_armhf.buildinfo
0ae9b10b1f6e6fcf5517102b7123a935 443284 science optional ampliconnoise_1.29-8+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
ampliconnoise-dbgsym_1.29-8+b1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 325688 bytes: control archive=1144 bytes.
899 bytes, 12 lines control
1378 bytes, 13 lines md5sums
Package: ampliconnoise-dbgsym
Source: ampliconnoise (1.29-8)
Version: 1.29-8+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 432
Depends: ampliconnoise (= 1.29-8+b1)
Section: debug
Priority: optional
Description: debug symbols for ampliconnoise
Build-Ids: 0c4ff58e13f1d91d31f62489205311bd7cc9cc17 0fee6a83b64b91b551316ff38a2c324c6b2fb888 1164a4a294b3b763dea01ae418e5fbb43aa840b0 38cd9354c7e5cebb753185f2766f4445f485b45f 46246217a9cdb24636076d3cecaf7e3c6e6aeca6 55b7166643d91f05b5010c0ee5d3154899755baf 5ab1c23ff771aaba67d6232f1be507af843b8d47 7c2d4a1290fc770819cada2f73caeb3bcf59fbf4 97f653b84390b9ad4d967d75197df86873ab8454 a34fb8dbe5ad0616b94a6c3a75b48d9aff492bc5 a87526ee5590c3bc7db9f9429c1325b4414a8992 ad0f71f15dbb1695613c6cddef97da9ab6c4643b d388df6104b46f7a19d3288b6d70b8668261f4b8
drwxr-xr-x root/root 0 2018-10-19 12:20 ./
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drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/share/
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/doc/ampliconnoise-dbgsym -> ampliconnoise
ampliconnoise_1.29-8+b1_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 443284 bytes: control archive=2588 bytes.
942 bytes, 23 lines control
4986 bytes, 68 lines md5sums
Package: ampliconnoise
Source: ampliconnoise (1.29-8)
Version: 1.29-8+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1255
Depends: libc6 (>= 2.29), libgsl25 (>= 2.6), libopenmpi3 (>= 4.0.3), mafft
Recommends: openmpi-bin
Section: science
Priority: optional
Homepage: https://github.com/lanzen/ampliconnoise
Description: removal of noise from 454 sequenced PCR amplicons
AmpliconNoise is a package of applications to clean up high-throughput
sequence data. It consists of three main parts:
.
Pyronoise - does flowgram-based clustering to spot misreads
SeqNoise - removes PCR point mutations
Perseus - removes PCR chimeras without the need for a set of reference
sequences
.
Previously there was a standalone "Pyronoise" by the same authors and
this package includes an updated version. There is also a "Denoiser"
in Qiime which is related but distinct.
drwxr-xr-x root/root 0 2018-10-19 12:20 ./
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/bin/
-rwxr-xr-x root/root 17876 2018-10-19 12:20 ./usr/bin/FCluster
-rwxr-xr-x root/root 9720 2018-10-19 12:20 ./usr/bin/FastaUnique
-rwxr-xr-x root/root 13800 2018-10-19 12:20 ./usr/bin/NDist
-rwxr-xr-x root/root 30176 2018-10-19 12:20 ./usr/bin/Perseus
-rwxr-xr-x root/root 30176 2018-10-19 12:20 ./usr/bin/PerseusD
-rwxr-xr-x root/root 21972 2018-10-19 12:20 ./usr/bin/PyroDist
-rwxr-xr-x root/root 46548 2018-10-19 12:20 ./usr/bin/PyroNoise
-rwxr-xr-x root/root 50596 2018-10-19 12:20 ./usr/bin/PyroNoiseA
-rwxr-xr-x root/root 50644 2018-10-19 12:20 ./usr/bin/PyroNoiseM
-rwxr-xr-x root/root 17880 2018-10-19 12:20 ./usr/bin/SeqDist
-rwxr-xr-x root/root 38360 2018-10-19 12:20 ./usr/bin/SeqNoise
-rwxr-xr-x root/root 9684 2018-10-19 12:20 ./usr/bin/SplitClusterClust
-rwxr-xr-x root/root 13780 2018-10-19 12:20 ./usr/bin/SplitClusterEven
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/share/
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/share/ampliconnoise/
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/share/ampliconnoise/Data/
-rw-r--r-- root/root 140066 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/LookUp.dat
-rw-r--r-- root/root 140432 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/LookUp_E123.dat
-rw-r--r-- root/root 140348 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/LookUp_Titanium.dat
-rw-r--r-- root/root 156 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/Tran.dat
-rw-r--r-- root/root 44 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/TranN.dat
-rw-r--r-- root/root 156 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/Tran_D.dat
-rw-r--r-- root/root 150 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/Tran_V6.dat
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/share/ampliconnoise/Scripts/
-rwxr-xr-x root/root 1726 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CSV.pl
-rwxr-xr-x root/root 645 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Class.pl
-rwxr-xr-x root/root 130 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Clean.sh
-rwxr-xr-x root/root 1954 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Clean360.pl
-rwxr-xr-x root/root 2604 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanAcyclic.pl
-rwxr-xr-x root/root 2554 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanBoth.pl
-rwxr-xr-x root/root 2460 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanBothM.pl
-rwxr-xr-x root/root 2468 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanMinMax.pl
-rwxr-xr-x root/root 133 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanMinMax.sh
-rwxr-xr-x root/root 751 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/ConvertDatFasta.pl
-rwxr-xr-x root/root 268 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CountFasta.pl
-rwxr-xr-x root/root 185 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CountSequences.pl
-rwxr-xr-x root/root 1335 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Diversity.pl
-rwxr-xr-x root/root 896 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/FilterGoodClass.pl
-rwxr-xr-x root/root 3001 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/FlowsFA.pl
-rwxr-xr-x root/root 3008 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/FlowsFA360.pl
-rwxr-xr-x root/root 3117 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/FlowsMinMax.pl
-rwxr-xr-x root/root 495 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Join.pl
-rwxr-xr-x root/root 789 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Map.pl
-rwxr-xr-x root/root 374 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/MedianS.sh
-rwxr-xr-x root/root 671 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Parse.pl
-rwxr-xr-x root/root 687 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/ParseBoth.pl
-rwxr-xr-x root/root 1901 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Qiime.pl
-rwxr-xr-x root/root 2772 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Qiime_OTU.pl
-rwxr-xr-x root/root 1746 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Qiime_Typical.pl
-rwxr-xr-x root/root 11538 2013-08-01 14:50 ./usr/share/ampliconnoise/Scripts/RunBoth.sh
-rwxr-xr-x root/root 11534 2013-08-01 14:54 ./usr/share/ampliconnoise/Scripts/RunBothFLX.sh
-rwxr-xr-x root/root 11195 2013-08-01 14:40 ./usr/share/ampliconnoise/Scripts/RunFLX.sh
-rwxr-xr-x root/root 11259 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/RunTitanium.sh
-rwxr-xr-x root/root 11259 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/RunTitaniumA.sh
-rwxr-xr-x root/root 14461 2013-08-01 14:40 ./usr/share/ampliconnoise/Scripts/RunTitaniumFast.sh
-rwxr-xr-x root/root 13951 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/RunTitaniumWeb.sh
-rwxr-xr-x root/root 967 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Split.pl
-rwxr-xr-x root/root 3580 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/SplitKeys.pl
-rwxr-xr-x root/root 3440 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/SplitKeysBoth.pl
-rwxr-xr-x root/root 2839 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/SplitKeysFlower.pl
-rwxr-xr-x root/root 538 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Sub.pl
-rwxr-xr-x root/root 320 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Subsample.sh
-rwxr-xr-x root/root 699 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/SubsampleDat.pl
-rwxr-xr-x root/root 225 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Truncate.pl
-rwxr-xr-x root/root 1747 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Typical.pl
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/share/doc-base/
-rw-r--r-- root/root 808 2018-10-19 12:20 ./usr/share/doc-base/ampliconnoise
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/share/doc/ampliconnoise/
-rw-r--r-- root/root 306514 2013-08-01 14:53 ./usr/share/doc/ampliconnoise/Doc.pdf
-rw-r--r-- root/root 353 2018-10-19 12:20 ./usr/share/doc/ampliconnoise/README.Debian
-rw-r--r-- root/root 225 2018-10-19 12:20 ./usr/share/doc/ampliconnoise/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2249 2018-10-19 12:20 ./usr/share/doc/ampliconnoise/changelog.Debian.gz
-rw-r--r-- root/root 1214 2018-10-19 12:20 ./usr/share/doc/ampliconnoise/copyright
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/share/man/
drwxr-xr-x root/root 0 2018-10-19 12:20 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/FCluster.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/FastaUnique.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/NDist.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/Perseus.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/PerseusD.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/PyroDist.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/PyroNoise.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/PyroNoiseA.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/PyroNoiseM.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/SeqDist.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/SeqNoise.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/SplitClusterClust.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2018-10-19 12:20 ./usr/share/man/man1/SplitClusterEven.1.gz -> ampliconnoise.1.gz
-rw-r--r-- root/root 2822 2018-10-19 12:20 ./usr/share/man/man1/ampliconnoise.1.gz
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Build Architecture: armhf
Build-Space: 12592
Build-Time: 54
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 345
Job: ampliconnoise_1.29-8
Machine Architecture: armhf
Package: ampliconnoise
Package-Time: 422
Source-Version: 1.29-8
Space: 12592
Status: successful
Version: 1.29-8+b1
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Finished at 2020-05-13T22:39:27Z
Build needed 00:07:02, 12592k disk space