ampliconnoise →
1.29-6+b2 →
armhf → 2017-08-17 05:44:54
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| ampliconnoise 1.29-6+b2 (armhf) Thu, 17 Aug 2017 05:41:21 +0000 |
+==============================================================================+
Package: ampliconnoise
Version: 1.29-6+b2
Source Version: 1.29-6
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-aa4929bc-fc4a-479b-99a3-34510890c1a4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
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Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
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Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.0 MB]
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| Fetch source files |
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Check APT
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Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'ampliconnoise' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/ampliconnoise/trunk/
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Get:1 http://172.17.0.1/private buster-staging/main ampliconnoise 1.29-6 (dsc) [2058 B]
Get:2 http://172.17.0.1/private buster-staging/main ampliconnoise 1.29-6 (tar) [1403 kB]
Get:3 http://172.17.0.1/private buster-staging/main ampliconnoise 1.29-6 (diff) [8816 B]
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I: NOTICE: Log filtering will replace 'build/ampliconnoise-icZIS1/ampliconnoise-1.29' with '<<PKGBUILDDIR>>'
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| Install build-essential |
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Setup apt archive
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dpkg-scanpackages: warning: Packages in archive but missing from override file:
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dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-QDviFZ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-QDviFZ/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
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gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
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gpg: using "Sbuild Signer" as default secret key for signing
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Install core build dependencies (apt-based resolver)
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Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
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| Check architectures |
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| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), libgsl-dev, libopenmpi-dev
Filtered Build-Depends: debhelper (>= 10), libgsl-dev, libopenmpi-dev
dpkg-deb: building package 'sbuild-build-depends-ampliconnoise-dummy' in '/<<BUILDDIR>>/resolver-QDviFZ/apt_archive/sbuild-build-depends-ampliconnoise-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-ampliconnoise-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
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Install ampliconnoise build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libgsl-dev
libgsl23 libgslcblas0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev
libibverbs1 libicu57 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200
libnl-route-3-200 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1
libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1
openmpi-common po-debconf
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
libhwloc-contrib-plugins libtool-doc openmpi-doc pciutils gfortran
| fortran95-compiler gcj-jdk m4-doc less www-browser opencl-icd
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs openmpi-bin xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3
libfile-stripnondeterminism-perl libgfortran3 libglib2.0-0 libgsl-dev
libgsl23 libgslcblas0 libhwloc-dev libhwloc-plugins libhwloc5 libibverbs-dev
libibverbs1 libicu57 libltdl-dev libltdl7 libmagic-mgc libmagic1 libnl-3-200
libnl-route-3-200 libopenmpi-dev libopenmpi2 libpciaccess0 libpipeline1
libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db ocl-icd-libopencl1
openmpi-common po-debconf sbuild-build-depends-ampliconnoise-dummy
0 upgraded, 48 newly installed, 0 to remove and 34 not upgraded.
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Get:48 http://172.17.0.1/private buster-staging/main armhf libopenmpi-dev armhf 2.1.1-6+rpi1 [1019 kB]
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Preparing to unpack .../44-libopenmpi2_2.1.1-6+rpi1_armhf.deb ...
Unpacking libopenmpi2:armhf (2.1.1-6+rpi1) ...
Selecting previously unselected package openmpi-common.
Preparing to unpack .../45-openmpi-common_2.1.1-6+rpi1_all.deb ...
Unpacking openmpi-common (2.1.1-6+rpi1) ...
Selecting previously unselected package libopenmpi-dev.
Preparing to unpack .../46-libopenmpi-dev_2.1.1-6+rpi1_armhf.deb ...
Unpacking libopenmpi-dev (2.1.1-6+rpi1) ...
Selecting previously unselected package sbuild-build-depends-ampliconnoise-dummy.
Preparing to unpack .../47-sbuild-build-depends-ampliconnoise-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-ampliconnoise-dummy (0.invalid.0) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.11-1) ...
Setting up libgfortran3:armhf (6.4.0-1+rpi1) ...
Setting up groff-base (1.22.3-9) ...
Setting up libglib2.0-0:armhf (2.53.4-3) ...
No schema files found: doing nothing.
Setting up gettext-base (0.19.8.1-2+b1) ...
Setting up libpipeline1:armhf (1.4.2-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-6) ...
Setting up libbsd0:armhf (0.8.6-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-3) ...
Setting up libmagic-mgc (1:5.31-1) ...
Setting up libmagic1:armhf (1:5.31-1) ...
Setting up libcroco3:armhf (0.6.12-1) ...
Setting up openmpi-common (2.1.1-6+rpi1) ...
Processing triggers for libc-bin (2.24-12) ...
Setting up autotools-dev (20161112.1) ...
Setting up libltdl7:armhf (2.4.6-2) ...
Setting up libpciaccess0:armhf (0.13.4-1) ...
Setting up ocl-icd-libopencl1:armhf (2.2.11-1) ...
Setting up bsdmainutils (9.0.12+nmu1) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libnl-3-200:armhf (3.2.27-2) ...
Setting up libgslcblas0:armhf (2.4+dfsg-6) ...
Setting up autopoint (0.19.8.1-2) ...
Setting up libfile-stripnondeterminism-perl (0.038-1) ...
Setting up libltdl-dev:armhf (2.4.6-2) ...
Setting up libgsl23:armhf (2.4+dfsg-6) ...
Setting up gettext (0.19.8.1-2+b1) ...
Setting up libgsl-dev (2.4+dfsg-6) ...
Setting up libnl-route-3-200:armhf (3.2.27-2) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.31-1) ...
Setting up libhwloc5:armhf (1.11.5-1+rpi1) ...
Setting up libhwloc-plugins (1.11.5-1+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.15.1-2) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libtool (2.4.6-2) ...
Setting up libibverbs1 (1.2.1-2) ...
Setting up po-debconf (1.0.20) ...
Setting up libhwloc-dev:armhf (1.11.5-1+rpi1) ...
Setting up libopenmpi2:armhf (2.1.1-6+rpi1) ...
Setting up libibverbs-dev (1.2.1-2) ...
Setting up libopenmpi-dev (2.1.1-6+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openmpi/include to provide /usr/include/mpi (mpi) in auto mode
Setting up dh-autoreconf (14) ...
Setting up dh-strip-nondeterminism (0.038-1) ...
Setting up debhelper (10.7.2) ...
Setting up sbuild-build-depends-ampliconnoise-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-12) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1+rpi1 gcc-6_6.4.0-1+rpi1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.5~beta1+b3 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.43 bash_4.4-5 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2+rpi1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1+rpi1 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.7.2 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-3.1 file_1:5.31-1 findutils_4.6.0+git+20170606-3 g++_4:6.3.0-4d1 g++-6_6.4.0-1+rpi1 gcc_4:6.3.0-4d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-6_6.4.0-1+rpi1 gcc-6-base_6.4.0-1+rpi1 gcc-7-base_7.1.0-9+rpi1 gettext_0.19.8.1-2+b1 gettext-base_0.19.8.1-2+b1 gnupg_2.1.18-8 gnupg-agent_2.1.18-8 gpgv_2.1.18-8 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-6 libapt-pkg5.0_1.5~beta1+b3 libarchive-zip-perl_1.59-1 libasan3_6.4.0-1+rpi1 libassuan0_2.4.3-2 libatomic1_7.1.0-9+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1 libblkid1_2.29.2-2+rpi1 libbsd0_0.8.6-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-12 libc-dev-bin_2.24-12 libc6_2.24-12 libc6-dev_2.24-12 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.1.0-9+rpi1 libcomerr2_1.43.4-2 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.3-4 libdb5.3_5.3.28-12 libdbus-1-3_1.10.20-1 libdebconfclient0_0.229 libdevmapper1.02.1_2:1.02.137-2 libdpkg-perl_1.18.24 libdrm2_2.4.81-2+rpi1 libfakeroot_1.21-3.1 libfdisk1_2.29.2-2+rpi1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.038-1 libgcc-6-dev_6.4.0-1+rpi1 libgcc1_1:7.1.0-9+rpi1 libgcrypt20_1.7.8-2 libgdbm3_1.8.3-14 libgfortran3_6.4.0-1+rpi1 libglib2.0-0_2.53.4-3 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.14-2 libgomp1_7.1.0-9+rpi1 libgpg-error0_1.27-3 libgsl-dev_2.4+dfsg-6 libgsl23_2.4+dfsg-6 libgslcblas0_2.4+dfsg-6 libhogweed4_3.3-1 libhwloc-dev_1.11.5-1+rpi1 libhwloc-plugins_1.11.5-1+rpi1 libhwloc5_1.11.5-1+rpi1 libibverbs-dev_1.2.1-2 libibverbs1_1.2.1-2 libicu57_57.1-6 libidn11_1.33-1 libidn2-0_2.0.2-1 libip4tc0_1.6.1-2 libisl15_0.18-1 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libksba8_1.3.5-2 libltdl-dev_2.4.6-2 libltdl7_2.4.6-2 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.31-1 libmagic1_1:5.31-1 libmount1_2.29.2-2+rpi1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnl-3-200_3.2.27-2 libnl-route-3-200_3.2.27-2 libnpth0_1.5-2 libopenmpi-dev_2.1.1-6+rpi1 libopenmpi2_2.1.1-6+rpi1 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpciaccess0_0.13.4-1 libpcre3_2:8.39-3 libperl5.24_5.24.1-7 libperl5.26_5.26.0-4 libpipeline1_1.4.2-1 libplymouth4_0.9.2-4 libpng16-16_1.6.30-2 libprocps6_2:3.3.12-3 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsmartcols1_2.29.2-2+rpi1 libsqlite3-0_3.19.3-3 libss2_1.43.4-2 libssl1.1_1.1.0f-3 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 libsystemd0_233-10 libtasn1-6_4.12-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libubsan0_7.1.0-9+rpi1 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2+rpi1 libxml2_2.9.4+dfsg1-3 linux-base_4.5 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.4-4.1 lsb-base_9.20161125+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mount_2.29.2-2+rpi1 mountall_2.54 multiarch-support_2.24-12 ncurses-base_6.0+20170715-2 ncurses-bin_6.0+20170715-2 ocl-icd-libopencl1_2.2.11-1 openmpi-common_2.1.1-6+rpi1 openssl_1.1.0f-3 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-4 perl-base_5.26.0-4 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-4 pinentry-curses_1.0.0-2 plymouth_0.9.2-4 po-debconf_1.0.20 procps_2:3.3.12-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-ampliconnoise-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9+nmu1 systemd_233-10 sysvinit-utils_2.88dsf-59.9 tar_1.29b-2 tzdata_2017b-2 udev_233-10 util-linux_2.29.2-2+rpi1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Nov 17 10:15:27 2016 UTC
gpgv: using RSA key 578A0494D1C646D1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ampliconnoise_1.29-6.dsc
dpkg-source: info: extracting ampliconnoise in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking ampliconnoise_1.29.orig.tar.gz
dpkg-source: info: unpacking ampliconnoise_1.29-6.debian.tar.xz
dpkg-source: info: applying fix-path-for-data.patch
dpkg-source: info: applying fix-segfault-on-non-fasta-input.patch
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying clang-ftbfs.patch
dpkg-source: info: applying mayhem.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 1.29-6+b2
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-aa4929bc-fc4a-479b-99a3-34510890c1a4
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package ampliconnoise
dpkg-buildpackage: info: source version 1.29-6+b2
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build ampliconnoise-1.29
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_auto_clean
make -j4 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
(cd FCluster && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/FCluster'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *o FCluster
make[2]: Leaving directory '/<<PKGBUILDDIR>>/FCluster'
(cd FastaUnique && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/FastaUnique'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o FastaUnique
make[2]: Leaving directory '/<<PKGBUILDDIR>>/FastaUnique'
(cd NDist && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/NDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o NDist
make[2]: Leaving directory '/<<PKGBUILDDIR>>/NDist'
(cd PyroDist && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroDist
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroDist'
(cd PyroNoise && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroNoise
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoise'
(cd PyroNoiseM && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoiseM'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroNoiseM
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoiseM'
(cd PyroNoiseA && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoiseA'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PyroNoiseA
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoiseA'
(cd SeqDist && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SeqDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SeqDist
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SeqDist'
(cd SeqNoise && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SeqNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SeqNoise
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SeqNoise'
(cd SplitClusterEven && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SplitClusterEven'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SplitClusterEven
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SplitClusterEven'
(cd SplitClusterClust && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SplitClusterClust'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o SplitClusterClust
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SplitClusterClust'
(cd Perseus && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/Perseus'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o Perseus
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Perseus'
(cd PerseusD && make clean)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PerseusD'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
rm -rf *.o PerseusD
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PerseusD'
(cd bin && rm -rf *)
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f *.o
rm -f *.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules build-arch
dh build-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
(cd FCluster && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/FCluster'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c FCluster.c
FCluster.c:223:1: warning: return type defaults to 'int' [-Wimplicit-int]
UpdateMinCacheForMarkedRows(struct t_Min* asMin,float** aafDistMatrix,int nN)
^~~~~~~~~~~~~~~~~~~~~~~~~~~
FCluster.c: In function 'UpdateMinCacheForMarkedRows':
FCluster.c:230:13: warning: implicit declaration of function 'UpdateMinCacheForRow' [-Wimplicit-function-declaration]
UpdateMinCacheForRow(asMin,i,aafDistMatrix);
^~~~~~~~~~~~~~~~~~~~
FCluster.c: At top level:
FCluster.c:237:1: warning: return type defaults to 'int' [-Wimplicit-int]
UpdateMinCacheForRow(struct t_Min* asMin,int i,float** aafDistMatrix)
^~~~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o FCluster FCluster.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/FCluster'
(cd FastaUnique && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/FastaUnique'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c FastaUnique.c
linking...
cc -Wl,-z,relro -Wl,-z,now -o FastaUnique FastaUnique.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/FastaUnique'
(cd NDist && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/NDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c NDist.c
NDist.c: In function 'readData':
NDist.c:707:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
^~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o NDist NDist.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/NDist'
(cd PyroDist && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroDist.c
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroDist PyroDist.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroDist'
(cd PyroNoise && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroNoise.c
PyroNoise.c: In function 'writeCentroids':
PyroNoise.c:2073:21: warning: too many arguments for format [-Wformat-extra-args]
fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroNoise PyroNoise.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoise'
(cd SeqDist && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SeqDist'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SeqDist.c
SeqDist.c: In function 'readData':
SeqDist.c:854:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
^~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o SeqDist SeqDist.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SeqDist'
(cd PyroNoiseM && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoiseM'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PyroNoiseM.c
PyroNoiseM.c: In function 'writeCentroids':
PyroNoiseM.c:2139:21: warning: too many arguments for format [-Wformat-extra-args]
fprintf(stderr, "Can't open szCenFile for writing\n",szCenFile);
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o PyroNoiseM PyroNoiseM.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoiseM'
(cd PyroNoiseA && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PyroNoiseA'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -O3 -c PyroNoiseA.c
linking...
mpicc -o PyroNoiseA PyroNoiseA.o -lm -Wl,-z,relro -Wl,-z,now
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PyroNoiseA'
(cd SeqNoise && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SeqNoise'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
mpicc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SeqNoise.c
SeqNoise.c: In function 'main':
SeqNoise.c:120:25: warning: too many arguments for format [-Wformat-extra-args]
if(bVerbose){printf("%d: Broadcast distance matrix\n", rank, nSize, nPacket); fflush(stdout);}
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
SeqNoise.c: In function 'readData':
SeqNoise.c:652:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
^~~~~~~
linking...
mpicc -Wl,-z,relro -Wl,-z,now -o SeqNoise SeqNoise.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SeqNoise'
(cd SplitClusterEven && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SplitClusterEven'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SplitClusterEven.c
SplitClusterEven.c: In function 'readMapFile':
SplitClusterEven.c:681:19: warning: too many arguments for format [-Wformat-extra-args]
fprintf(stderr, "Failed to open map file\n", szMapFile);
^~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o SplitClusterEven SplitClusterEven.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SplitClusterEven'
(cd SplitClusterClust && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/SplitClusterClust'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c SplitClusterClust.c
SplitClusterClust.c: In function 'readMapFile':
SplitClusterClust.c:316:19: warning: too many arguments for format [-Wformat-extra-args]
fprintf(stderr, "Failed to open map file\n", szMapFile);
^~~~~~~~~~~~~~~~~~~~~~~~~~~
linking...
gcc -Wl,-z,relro -Wl,-z,now -o SplitClusterClust SplitClusterClust.o -lm
make[2]: Leaving directory '/<<PKGBUILDDIR>>/SplitClusterClust'
(cd Perseus && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/Perseus'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c Perseus.c
Perseus.c: In function 'readData':
Perseus.c:856:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
^~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o Perseus Perseus.o -lm -lgsl -lgslcblas
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Perseus'
(cd PerseusD && CFLAGS="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make)
make[2]: Entering directory '/<<PKGBUILDDIR>>/PerseusD'
make[2]: warning: jobserver unavailable: using -j1. Add '+' to parent make rule.
cc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -c PerseusD.c
PerseusD.c: In function 'readData':
PerseusD.c:908:52: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration]
ptData->acSequences[(nSequences - 1)*nM + nPos] = toupper(szLine[i]);
^~~~~~~
linking...
cc -Wl,-z,relro -Wl,-z,now -o PerseusD PerseusD.o -lm -lgsl -lgslcblas
make[2]: Leaving directory '/<<PKGBUILDDIR>>/PerseusD'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
dh_testroot -a
dh_prep -a
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make install
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cp FCluster/FCluster bin
cp FastaUnique/FastaUnique bin
cp NDist/NDist bin
cp PyroDist/PyroDist bin
cp PyroNoise/PyroNoise bin
cp PyroNoiseM/PyroNoiseM bin
cp PyroNoiseA/PyroNoiseA bin
cp SeqDist/SeqDist bin
cp SeqNoise/SeqNoise bin
cp SplitClusterEven/SplitClusterEven bin
cp SplitClusterClust/SplitClusterClust bin
cp Perseus/Perseus bin
cp PerseusD/PerseusD bin
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install bin/* /usr/bin
dh_install Data/* /usr/share/ampliconnoise/Data/
dh_install Scripts/* /usr/share/ampliconnoise/Scripts/
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
debian/ampliconnoise.pod
pod2man -c AmpliconNoise Documentation debian/ampliconnoise.pod > ampliconnoise.1
dh_installman ampliconnoise.1
( for f in bin/* ; do \
ln -s ampliconnoise.1 debian/ampliconnoise/usr/share/man/man1/`basename "$f"`.1 ; \
done )
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ampliconnoise/usr/bin/PerseusD debian/ampliconnoise/usr/bin/Perseus were not linked against libgslcblas.so.0 (they use none of the library's symbols)
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ampliconnoise/usr/bin/PyroNoiseM debian/ampliconnoise/usr/bin/SeqNoise debian/ampliconnoise/usr/bin/PerseusD debian/ampliconnoise/usr/bin/FastaUnique debian/ampliconnoise/usr/bin/SplitClusterClust debian/ampliconnoise/usr/bin/PyroDist debian/ampliconnoise/usr/bin/SeqDist debian/ampliconnoise/usr/bin/NDist debian/ampliconnoise/usr/bin/PyroNoise debian/ampliconnoise/usr/bin/FCluster debian/ampliconnoise/usr/bin/SplitClusterEven debian/ampliconnoise/usr/bin/Perseus were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package ampliconnoise: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: package ampliconnoise: unused substitution variable ${perl:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'ampliconnoise' in '../ampliconnoise_1.29-6+b2_armhf.deb'.
dpkg-deb: building package 'ampliconnoise-dbgsym' in '../ampliconnoise-dbgsym_1.29-6+b2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../ampliconnoise_1.29-6+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build ampliconnoise-1.29
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-08-17T05:44:52Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
ampliconnoise_1.29-6+b2_armhf.changes:
--------------------------------------
Format: 1.8
Date: Thu, 17 Nov 2016 11:02:49 +0100
Source: ampliconnoise (1.29-6)
Binary: ampliconnoise
Binary-Only: yes
Architecture: armhf
Version: 1.29-6+b2
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
ampliconnoise - removal of noise from 454 sequenced PCR amplicons
Changes:
ampliconnoise (1.29-6+b2) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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Checksums-Sha256:
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Files:
46c9978de17b1ec5571842482fab2f7e 262950 debug extra ampliconnoise-dbgsym_1.29-6+b2_armhf.deb
592b56cf7cecd6c5a75c6457bd6e3a41 443106 science optional ampliconnoise_1.29-6+b2_armhf.deb
e077d04db133035d459b48d7cc27c97a 5454 science optional ampliconnoise_1.29-6_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
ampliconnoise-dbgsym_1.29-6+b2_armhf.deb
----------------------------------------
new debian package, version 2.0.
size 262950 bytes: control archive=1114 bytes.
896 bytes, 12 lines control
1378 bytes, 13 lines md5sums
Package: ampliconnoise-dbgsym
Source: ampliconnoise (1.29-6)
Version: 1.29-6+b2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 372
Depends: ampliconnoise (= 1.29-6+b2)
Section: debug
Priority: extra
Description: Debug symbols for ampliconnoise
Build-Ids: 137f1292407f9adc22de367d46c17247c6b1a32b 34ee82f636def80f7e15937a24110e97ea775565 52496d703f5ab28b39b582e9957aca3a750ae14f 5838bcfb95b362fb0cca6bc5b7235cbc70233bf1 588b08163b7ba06596b1f4a3d21efe8a25ec5d5e 69b659bb6b0ebea9a4094484e61d5c53c19e9e16 964591efe617e499d8b2132a1d8e87e6c3850324 a41f5a6adea56700bfe208e1d5c6ad6c67605522 acaec206c312ccbd7316368f865ccf8e4fdf7a82 b15c1d886db9fcff3cc0d87b422e1a88f644b32c b4ecb19a808845ea842da03b2b2f7794b94755c4 c1b2c15e42d36f6425688f700d558807565c4e62 c7b1541a68155e021aa905cdfa1ddb8dff3b638d
drwxr-xr-x root/root 0 2016-11-17 10:02 ./
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/lib/
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-rw-r--r-- root/root 53972 2016-11-17 10:02 ./usr/lib/debug/.build-id/13/7f1292407f9adc22de367d46c17247c6b1a32b.debug
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/lib/debug/.build-id/34/
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drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/lib/debug/.build-id/52/
-rw-r--r-- root/root 22136 2016-11-17 10:02 ./usr/lib/debug/.build-id/52/496d703f5ab28b39b582e9957aca3a750ae14f.debug
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/lib/debug/.build-id/58/
-rw-r--r-- root/root 16936 2016-11-17 10:02 ./usr/lib/debug/.build-id/58/38bcfb95b362fb0cca6bc5b7235cbc70233bf1.debug
-rw-r--r-- root/root 35008 2016-11-17 10:02 ./usr/lib/debug/.build-id/58/8b08163b7ba06596b1f4a3d21efe8a25ec5d5e.debug
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/lib/debug/.build-id/69/
-rw-r--r-- root/root 19412 2016-11-17 10:02 ./usr/lib/debug/.build-id/69/b659bb6b0ebea9a4094484e61d5c53c19e9e16.debug
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/lib/debug/.build-id/96/
-rw-r--r-- root/root 12656 2016-11-17 10:02 ./usr/lib/debug/.build-id/96/4591efe617e499d8b2132a1d8e87e6c3850324.debug
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/lib/debug/.build-id/a4/
-rw-r--r-- root/root 13324 2016-11-17 10:02 ./usr/lib/debug/.build-id/a4/1f5a6adea56700bfe208e1d5c6ad6c67605522.debug
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/lib/debug/.build-id/ac/
-rw-r--r-- root/root 10712 2016-11-17 10:02 ./usr/lib/debug/.build-id/ac/aec206c312ccbd7316368f865ccf8e4fdf7a82.debug
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/lib/debug/.build-id/b1/
-rw-r--r-- root/root 21048 2016-11-17 10:02 ./usr/lib/debug/.build-id/b1/5c1d886db9fcff3cc0d87b422e1a88f644b32c.debug
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-rw-r--r-- root/root 34000 2016-11-17 10:02 ./usr/lib/debug/.build-id/b4/ecb19a808845ea842da03b2b2f7794b94755c4.debug
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/lib/debug/.build-id/c1/
-rw-r--r-- root/root 41932 2016-11-17 10:02 ./usr/lib/debug/.build-id/c1/b2c15e42d36f6425688f700d558807565c4e62.debug
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/lib/debug/.build-id/c7/
-rw-r--r-- root/root 21356 2016-11-17 10:02 ./usr/lib/debug/.build-id/c7/b1541a68155e021aa905cdfa1ddb8dff3b638d.debug
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/share/
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/doc/ampliconnoise-dbgsym -> ampliconnoise
ampliconnoise_1.29-6+b2_armhf.deb
---------------------------------
new debian package, version 2.0.
size 443106 bytes: control archive=2646 bytes.
935 bytes, 23 lines control
4986 bytes, 68 lines md5sums
Package: ampliconnoise
Source: ampliconnoise (1.29-6)
Version: 1.29-6+b2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1259
Depends: libc6 (>= 2.4), libgsl23, libgslcblas0, libopenmpi2, mafft
Recommends: openmpi-bin
Section: science
Priority: optional
Homepage: http://code.google.com/p/ampliconnoise/
Description: removal of noise from 454 sequenced PCR amplicons
AmpliconNoise is a package of applications to clean up high-throughput
sequence data. It consists of three main parts:
.
Pyronoise - does flowgram-based clustering to spot misreads
SeqNoise - removes PCR point mutations
Perseus - removes PCR chimeras without the need for a set of reference
sequences
.
Previously there was a standalone "Pyronoise" by the same authors and
this package includes an updated version. There is also a "Denoiser"
in Qiime which is related but distinct.
drwxr-xr-x root/root 0 2016-11-17 10:02 ./
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/bin/
-rwxr-xr-x root/root 17920 2016-11-17 10:02 ./usr/bin/FCluster
-rwxr-xr-x root/root 9764 2016-11-17 10:02 ./usr/bin/FastaUnique
-rwxr-xr-x root/root 13844 2016-11-17 10:02 ./usr/bin/NDist
-rwxr-xr-x root/root 30220 2016-11-17 10:02 ./usr/bin/Perseus
-rwxr-xr-x root/root 30220 2016-11-17 10:02 ./usr/bin/PerseusD
-rwxr-xr-x root/root 17920 2016-11-17 10:02 ./usr/bin/PyroDist
-rwxr-xr-x root/root 50688 2016-11-17 10:02 ./usr/bin/PyroNoise
-rwxr-xr-x root/root 50640 2016-11-17 10:02 ./usr/bin/PyroNoiseA
-rwxr-xr-x root/root 50688 2016-11-17 10:02 ./usr/bin/PyroNoiseM
-rwxr-xr-x root/root 17928 2016-11-17 10:02 ./usr/bin/SeqDist
-rwxr-xr-x root/root 38408 2016-11-17 10:02 ./usr/bin/SeqNoise
-rwxr-xr-x root/root 9728 2016-11-17 10:02 ./usr/bin/SplitClusterClust
-rwxr-xr-x root/root 17920 2016-11-17 10:02 ./usr/bin/SplitClusterEven
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/share/
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/share/ampliconnoise/
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/share/ampliconnoise/Data/
-rw-r--r-- root/root 140066 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/LookUp.dat
-rw-r--r-- root/root 140432 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/LookUp_E123.dat
-rw-r--r-- root/root 140348 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/LookUp_Titanium.dat
-rw-r--r-- root/root 156 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/Tran.dat
-rw-r--r-- root/root 44 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/TranN.dat
-rw-r--r-- root/root 156 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/Tran_D.dat
-rw-r--r-- root/root 150 2013-08-01 14:37 ./usr/share/ampliconnoise/Data/Tran_V6.dat
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/share/ampliconnoise/Scripts/
-rwxr-xr-x root/root 1726 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CSV.pl
-rwxr-xr-x root/root 645 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Class.pl
-rwxr-xr-x root/root 130 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Clean.sh
-rwxr-xr-x root/root 1954 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Clean360.pl
-rwxr-xr-x root/root 2604 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanAcyclic.pl
-rwxr-xr-x root/root 2554 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanBoth.pl
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-rwxr-xr-x root/root 2468 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanMinMax.pl
-rwxr-xr-x root/root 133 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/CleanMinMax.sh
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-rwxr-xr-x root/root 789 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Map.pl
-rwxr-xr-x root/root 374 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/MedianS.sh
-rwxr-xr-x root/root 671 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Parse.pl
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-rwxr-xr-x root/root 11538 2013-08-01 14:50 ./usr/share/ampliconnoise/Scripts/RunBoth.sh
-rwxr-xr-x root/root 11534 2013-08-01 14:54 ./usr/share/ampliconnoise/Scripts/RunBothFLX.sh
-rwxr-xr-x root/root 11195 2013-08-01 14:40 ./usr/share/ampliconnoise/Scripts/RunFLX.sh
-rwxr-xr-x root/root 11259 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/RunTitanium.sh
-rwxr-xr-x root/root 11259 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/RunTitaniumA.sh
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-rwxr-xr-x root/root 3580 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/SplitKeys.pl
-rwxr-xr-x root/root 3440 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/SplitKeysBoth.pl
-rwxr-xr-x root/root 2839 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/SplitKeysFlower.pl
-rwxr-xr-x root/root 538 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Sub.pl
-rwxr-xr-x root/root 320 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Subsample.sh
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-rwxr-xr-x root/root 225 2013-08-01 14:37 ./usr/share/ampliconnoise/Scripts/Truncate.pl
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drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/share/doc-base/
-rw-r--r-- root/root 808 2013-09-12 08:57 ./usr/share/doc-base/ampliconnoise
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/share/doc/ampliconnoise/
-rw-r--r-- root/root 306514 2013-08-01 14:53 ./usr/share/doc/ampliconnoise/Doc.pdf
-rw-r--r-- root/root 353 2013-09-12 08:57 ./usr/share/doc/ampliconnoise/README.Debian
-rw-r--r-- root/root 224 2016-11-17 10:02 ./usr/share/doc/ampliconnoise/changelog.Debian.armhf.gz
-rw-r--r-- root/root 2140 2016-11-17 10:02 ./usr/share/doc/ampliconnoise/changelog.Debian.gz
-rw-r--r-- root/root 1214 2016-11-17 09:57 ./usr/share/doc/ampliconnoise/copyright
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/share/man/
drwxr-xr-x root/root 0 2016-11-17 10:02 ./usr/share/man/man1/
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/FCluster.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/FastaUnique.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/NDist.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/Perseus.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/PerseusD.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/PyroDist.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/PyroNoise.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/PyroNoiseA.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/PyroNoiseM.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/SeqDist.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/SeqNoise.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/SplitClusterClust.1.gz -> ampliconnoise.1.gz
lrwxrwxrwx root/root 0 2016-11-17 10:02 ./usr/share/man/man1/SplitClusterEven.1.gz -> ampliconnoise.1.gz
-rw-r--r-- root/root 2797 2016-11-17 10:02 ./usr/share/man/man1/ampliconnoise.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 12304
Build-Time: 65
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 129
Job: ampliconnoise_1.29-6
Machine Architecture: armhf
Package: ampliconnoise
Package-Time: 211
Source-Version: 1.29-6
Space: 12304
Status: successful
Version: 1.29-6+b2
--------------------------------------------------------------------------------
Finished at 2017-08-17T05:44:52Z
Build needed 00:03:31, 12304k disk space