altree →
1.3.2-2 →
armhf → 2023-12-01 07:08:55
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| altree 1.3.2-2 (armhf) Fri, 01 Dec 2023 07:03:22 +0000 |
+==============================================================================+
Package: altree
Version: 1.3.2-2
Source Version: 1.3.2-2
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-cae2ac7a-9604-4a43-a26e-fb44004de4c0' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/altree-dVKKS0/resolver-dP7Unt' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.2 MB in 5s (5476 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'altree' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/altree.git
Please use:
git clone https://salsa.debian.org/med-team/altree.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 620 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main altree 1.3.2-2 (dsc) [2304 B]
Get:2 http://172.17.4.1/private trixie-staging/main altree 1.3.2-2 (tar) [611 kB]
Get:3 http://172.17.4.1/private trixie-staging/main altree 1.3.2-2 (diff) [7196 B]
Fetched 620 kB in 0s (4344 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/altree-dVKKS0/altree-1.3.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/altree-dVKKS0' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev, build-essential, fakeroot
Filtered Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev, libtest-deep-perl, fig2dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [845 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [864 B]
Fetched 2318 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdextrautils
bsdutils debhelper dh-autoreconf dh-strip-nondeterminism dpkg-dev dwz
fig2dev file fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext
gettext-base ghostscript groff-base intltool-debian latex-make
libapache-pom-java libarchive-zip-perl libavahi-client3 libavahi-common-data
libavahi-common3 libblas-dev libblas3 libblkid1 libbrotli1 libbsd0 libcairo2
libcommons-logging-java libcommons-parent-java libcups2 libdbus-1-3
libdebhelper-perl libdeflate0 libdpkg-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libfontbox-java libfontconfig1 libfontenc1
libfreetype6 libglib2.0-0 libgraphite2-3 libgs-common libgs10 libgs10-common
libgsl-dev libgsl27 libgslcblas0 libharfbuzz0b libice6 libicu72 libidn12
libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libkpathsea6 liblcms2-2
liblerc4 libmagic-mgc libmagic1 libmath-tamuanova-perl libmount1 libnetpbm11
libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1
libpixman-1-0 libpng16-16 libpotrace0 libptexenc1 libpython3-stdlib
libpython3.11-minimal libpython3.11-stdlib libsharpyuv0 libsigsegv2 libsm6
libsmartcols1 libsub-override-perl libsynctex2 libtamuanova-0.2 libteckit0
libtest-deep-perl libtexlua53-5 libtiff6 libtool libuchardet0 libuuid1
libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6
libzzip-0-13 m4 man-db media-types mount netpbm po-debconf poppler-data
preview-latex-style python3 python3-minimal python3.11 python3.11-minimal
sensible-utils t1utils tex-common texlive-base texlive-binaries
texlive-fonts-recommended texlive-lang-french texlive-latex-base
texlive-latex-extra texlive-latex-recommended texlive-pictures ucf
util-linux x11-common xdg-utils xfonts-encodings xfonts-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make debian-keyring xfig
fonts-freefont-otf | fonts-freefont-ttf fonts-texgyre gawk-doc gettext-doc
libasprintf-dev libgettextpo-dev groff liblapack-doc
libavalon-framework-java libcommons-logging-java-doc
libexcalibur-logkit-java liblog4j1.2-java cups-common git bzr
low-memory-monitor gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
liblcms2-utils cryptsetup-bin libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser nfs-common libmail-box-perl
poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho
fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai
fonts-arphic-uming fonts-nanum python3-doc python3-tk python3-venv
python3.11-venv python3.11-doc binfmt-support perl-tk xpdf | pdf-viewer
xzdec texlive-binaries-sse2 hintview texlive-fonts-recommended-doc
texlive-latex-base-doc wp2latex python3-pygments icc-profiles
libfile-which-perl texlive-latex-extra-doc texlive-science
texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex
texlive-pictures-doc vprerex dosfstools kbd util-linux-extra
util-linux-locales
Recommended packages:
libalgorithm-merge-perl curl | wget | lynx inkscape dbus
libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs fonts-droid-fallback libltdl-dev uuid-runtime
libmail-sendmail-perl ca-certificates lmodern dvisvgm tex-gyre tipa
default-jre libspreadsheet-parseexcel-perl texlive-plain-generic ruby tk
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdextrautils
debhelper dh-autoreconf dh-strip-nondeterminism dwz fig2dev file
fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base
ghostscript groff-base intltool-debian latex-make libapache-pom-java
libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3
libblas-dev libblas3 libbrotli1 libbsd0 libcairo2 libcommons-logging-java
libcommons-parent-java libcups2 libdbus-1-3 libdebhelper-perl libdeflate0
libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java
libfontconfig1 libfontenc1 libfreetype6 libglib2.0-0 libgraphite2-3
libgs-common libgs10 libgs10-common libgsl-dev libgsl27 libgslcblas0
libharfbuzz0b libice6 libicu72 libidn12 libijs-0.35 libjbig0 libjbig2dec0
libjpeg62-turbo libkpathsea6 liblcms2-2 liblerc4 libmagic-mgc libmagic1
libmath-tamuanova-perl libnetpbm11 libopenjp2-7 libpaper-utils libpaper1
libpdfbox-java libpipeline1 libpixman-1-0 libpng16-16 libpotrace0
libptexenc1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib
libsharpyuv0 libsigsegv2 libsm6 libsub-override-perl libsynctex2
libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53-5 libtiff6 libtool
libuchardet0 libwebp7 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4
libxrender1 libxt6 libzzip-0-13 m4 man-db media-types netpbm po-debconf
poppler-data preview-latex-style python3 python3-minimal python3.11
python3.11-minimal sbuild-build-depends-main-dummy sensible-utils t1utils
tex-common texlive-base texlive-binaries texlive-fonts-recommended
texlive-lang-french texlive-latex-base texlive-latex-extra
texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils
xfonts-encodings xfonts-utils
The following packages will be upgraded:
bsdutils dpkg-dev libblkid1 libdpkg-perl libmount1 libsmartcols1 libuuid1
mount util-linux
9 upgraded, 137 newly installed, 0 to remove and 36 not upgraded.
1 not fully installed or removed.
Need to get 237 MB/239 MB of archives.
After this operation, 633 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [976 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.2-6 [134 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.2-6 [86.5 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.2-6 [1110 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf gawk armhf 1:5.2.1-2 [595 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf poppler-data all 0.4.12-1 [1601 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.6-3 [800 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.6-3 [1674 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.4-5 [26.2 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.2-6 [28.1 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.6-3 [1679 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.6-3 [586 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.4-5 [9200 B]
Get:17 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.4-5 [26.2 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.2-6 [145 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.2-6 [167 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.2-6 [102 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-6 [81.2 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf bash-completion all 1:2.11-8 [224 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.8 [82.1 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:43 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.8 [956 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libfontenc1 armhf 1:1.1.4-1 [22.3 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf xfonts-encodings all 1:1.0.4-2.2 [577 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf xfonts-utils armhf 1:7.7+6 [82.5 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf fonts-urw-base35 all 20200910-7 [10.8 MB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libgs-common all 10.02.1~dfsg-1 [147 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libgs10-common all 10.02.1~dfsg-1 [474 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libavahi-common-data armhf 0.8-13 [111 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libavahi-common3 armhf 0.8-13 [40.1 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libdbus-1-3 armhf 1.14.10-3 [177 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libavahi-client3 armhf 0.8-13 [42.6 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libcups2 armhf 2.4.7-1 [206 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libidn12 armhf 1.41-1+b1 [77.0 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libijs-0.35 armhf 0.35-15.1 [13.2 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libjbig2dec0 armhf 0.19-3+b2 [58.6 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf liblcms2-2 armhf 2.14-2 [124 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libopenjp2-7 armhf 2.5.0-2 [164 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libgs10 armhf 10.02.1~dfsg-1 [2084 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf ghostscript armhf 10.02.1~dfsg-1 [49.3 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libnetpbm11 armhf 2:11.03.06-1 [158 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf netpbm armhf 2:11.03.06-1 [1815 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf fig2dev armhf 1:3.2.9-3 [379 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf fonts-lmodern all 2.005-1 [4540 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf tex-common all 6.18 [32.5 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf latex-make all 2.4.3-1 [1030 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libapache-pom-java all 29-2 [5276 B]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libcommons-parent-java all 56-1 [10.8 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libcommons-logging-java all 1.2-4 [60.2 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libfontbox-java all 1:1.8.16-4 [211 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.1-4 [1257 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libgslcblas0 armhf 2.7.1+dfsg-6 [79.3 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libgsl27 armhf 2.7.1+dfsg-6 [753 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libgsl-dev armhf 2.7.1+dfsg-6 [965 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libkpathsea6 armhf 2023.20230311.66589-8 [144 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libtamuanova-0.2 armhf 0.2-5+b1 [7980 B]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libmath-tamuanova-perl armhf 1.0.2-3+b1 [12.9 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libpdfbox-java all 1:1.8.16-4 [5527 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libpotrace0 armhf 1.16-2 [23.6 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libptexenc1 armhf 2023.20230311.66589-8 [42.7 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libsynctex2 armhf 2023.20230311.66589-8 [48.3 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libteckit0 armhf 2.5.11+ds1-1 [256 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libtest-deep-perl all 1.204-1 [52.9 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libtexlua53-5 armhf 2023.20230311.66589-8 [81.9 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libxmu6 armhf 2:1.1.3-3 [52.0 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libxpm4 armhf 1:3.5.17-1 [49.3 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libxaw7 armhf 2:1.0.14-1 [165 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libxi6 armhf 2:1.8-1 [78.1 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libzzip-0-13 armhf 0.13.72+dfsg.1-1.1 [54.3 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf preview-latex-style all 13.2-1 [350 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf t1utils armhf 1.41-4 [52.3 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf texlive-binaries armhf 2023.20230311.66589-8 [5570 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf texlive-base all 2023.20231007-1 [22.0 MB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf texlive-fonts-recommended all 2023.20231007-1 [4990 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf texlive-lang-french all 2023.20231007-1 [90.2 MB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf texlive-latex-base all 2023.20231007-1 [1239 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf texlive-latex-recommended all 2023.20231007-1 [8835 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf texlive-pictures all 2023.20231007-1 [15.9 MB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf texlive-latex-extra all 2023.20231007-2 [19.5 MB]
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invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
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Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
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Setting up libpaper-utils (1.1.29) ...
Setting up xfonts-utils (1:7.7+6) ...
Setting up man-db (2.12.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up tex-common (6.18) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up latex-make (2.4.3-1) ...
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Setting up libxt6:armhf (1:1.2.1-1.1) ...
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Setting up ghostscript (10.02.1~dfsg-1) ...
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update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up texlive-base (2023.20231007-1) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg
tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex
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Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for tex-common (6.18) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
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+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc-12_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.2 bash_5.2.15-2 bash-completion_1:2.11-8 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.2-6 bsdutils_1:2.39.2-6 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-10+rpi1 cpp-13_13.2.0-5+rpi1 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.8 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 fig2dev_1:3.2.9-3 file_1:5.45-2 findutils_4.9.0-5 fontconfig-config_2.14.2-6 fonts-lmodern_2.005-1 fonts-urw-base35_20200910-7 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gawk_1:5.2.1-2 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 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xfonts-utils_1:7.7+6 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: altree
Binary: altree, altree-examples
Architecture: any all
Version: 1.3.2-2
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Charles Plessy <plessy@debian.org>, Vincent Danjean <vdanjean@debian.org>, Andreas Tille <tille@debian.org>
Homepage: https://gitlab.inria.fr/NGS/ALTree
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/altree
Vcs-Git: https://salsa.debian.org/med-team/altree.git
Testsuite: autopkgtest
Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev | libblas.so, libtest-deep-perl, fig2dev
Package-List:
altree deb science optional arch=any
altree-examples deb science optional arch=all
Checksums-Sha1:
095d136e5ffbeeb2f0e0da550a8a06e8ff5ca7f0 610823 altree_1.3.2.orig.tar.gz
7aa27b7775707a6660381ef03fb78757f33929b2 7196 altree_1.3.2-2.debian.tar.xz
Checksums-Sha256:
f9d5beda91aaab219e1397b4c19e0649788a871c8c29fa1e8343a53c5f710b8e 610823 altree_1.3.2.orig.tar.gz
1747f795ec12019cdb81c42b9205d0cbdedd8a735df8a653d52ebf0a1f1cec29 7196 altree_1.3.2-2.debian.tar.xz
Files:
fd17066d7f6bc07baacf526ff3ee1c3b 610823 altree_1.3.2.orig.tar.gz
9812f8181ed7dc8647d1ae8d78a7f09a 7196 altree_1.3.2-2.debian.tar.xz
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gpgv: Signature made Wed Nov 29 13:01:25 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./altree_1.3.2-2.dsc: no acceptable signature found
dpkg-source: info: extracting altree in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking altree_1.3.2.orig.tar.gz
dpkg-source: info: unpacking altree_1.3.2-2.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-cae2ac7a-9604-4a43-a26e-fb44004de4c0
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package altree
dpkg-buildpackage: info: source version 1.3.2-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C Documentation distclean || true
make[2]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[2]: Nothing to be done for 'distclean'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro"
Checking if your kit is complete...
Warning: the following files are missing in your kit:
CUtils/c_sources/MYMETA.json
CUtils/MYMETA.json
MYMETA.json
Please inform the author.
MakeMaker (v7.64)
Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib'
Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib'
Generating a Unix-style Makefile
Writing Makefile for ALTree::CUtils
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for ALTree::CUtils
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for altree
Writing MYMETA.yml and MYMETA.json
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C Documentation pdf
make[2]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE
make[3]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
======> building manual.pdf <======
Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}'
Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 36.
Package texdepends Warning: Diverting empty macro 'Ginclude@eps'
(texdepends) Probably a bug in texdepends.sty.
Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87.
Chapter 1.
LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121.
Package texdepends Warning: No 'fig/overview.pdftex' file
(texdepends) using 1 for graphic dimensions on input line 124.
Package texdepends Warning: Figure 'fig/overview.pdftex_t' needed
(texdepends) Skipping it this time (the last one however)
(texdepends) on input line 124.
LaTeX Warning: Reference `fig:nesting_algo' on page 2 undefined on input line 143.
Package natbib Warning: Citation `Bardel05' on page 2 undefined on input line 143.
Package natbib Warning: Citation `Ge03' on page 2 undefined on input line 146.
Package natbib Warning: Citation `Becker04' on page 2 undefined on input line 146.
Package texdepends Warning: No 'fig/altree-q.pdftex' file
(texdepends) using 1 for graphic dimensions on input line 150.
Package texdepends Warning: Figure 'fig/altree-q.pdftex_t' needed
(texdepends) Skipping it this time (the last one however)
(texdepends) on input line 150.
LaTeX Warning: `h' float specifier changed to `ht'.
Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180.
Package natbib Warning: Citation `Stephens01' on page 5 undefined on input line 197.
Package natbib Warning: Citation `Stephens03' on page 5 undefined on input line 197.
Package natbib Warning: Citation `Becker04' on page 5 undefined on input line 198.
Package natbib Warning: Citation `Swofford02' on page 5 undefined on input line 199.
Package natbib Warning: Citation `Felsenstein04' on page 5 undefined on input line 200.
Package natbib Warning: Citation `YangPAML' on page 5 undefined on input line 200.
Underfull \hbox (badness 1454) in paragraph at lines 196--201
[]\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10.
Chapter 2.
Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278.
Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281.
Underfull \hbox (badness 1142) in paragraph at lines 281--284
[]\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-
Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284.
Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288.
Underfull \hbox (badness 2486) in paragraph at lines 284--290
[]\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab
Underfull \hbox (badness 10000) in paragraph at lines 314--315
Chapter 3.
Underfull \hbox (badness 10000) in paragraph at lines 369--369
[]|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of
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Chapter 7.
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Chapter 1.
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Chapter 2.
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Chapter 1.
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Chapter 3.
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[]|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of
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[]
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[]\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes
Chapter 4.
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[]
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\T1/ptm/m/n/10.95 Examples: $[]$ $[]$
Chapter 5.
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[]|\T1/pcr/m/n/10.95 --data-qual|-q
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[]|\T1/ptm/m/n/10.95 remove the out-group se-quence for the
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[]|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with
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[]|\T1/pcr/m/n/10.95 --tree-building-program|-p
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[]|\T1/pcr/m/n/10.95 --s-site-characters
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[]
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\T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes
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[][]
Chapter 6.
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[]\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in-
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[]\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put
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[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run
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\T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti
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[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run
Chapter 7.
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/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE
make[9]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD
make[9]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
*** Checking rebuild with rule 'latex'
*** Checking rebuild with rule 'texdepends'
/usr/bin/make LU_REC_LEVEL=5 manual.pdf
make[10]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[10]: 'manual.pdf' is up to date.
make[10]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
dh_auto_build
make -j4
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
make -C c_sources
Running Mkbootstrap for CUtils ()
make[4]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" chisq.c
chmod 644 "CUtils.bs"
cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm
cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm
cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm
cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm
cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm
cp ALTree/Node.pm blib/lib/ALTree/Node.pm
cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm
cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm
cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm
cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm
cp ALTree/Site.pm blib/lib/ALTree/Site.pm
cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm
cp ALTree/Input.pm blib/lib/ALTree/Input.pm
cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm
cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm
cp ALTree/Base.pm blib/lib/ALTree/Base.pm
cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm
cp ALTree/Import.pm blib/lib/ALTree/Import.pm
"/usr/bin/perl" "/usr/share/perl/5.36.0/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.36/ExtUtils/typemap' CUtils.xs > CUtils.xsc
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" double_permutation.c
cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm
AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils)
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" fisher.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" mt19937ar.c
Please specify prototyping behavior for CUtils.xs (see perlxs manual)
mv CUtils.xsc CUtils.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" myrand.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" resampling.c
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
arm-linux-gnueabihf-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" CUtils.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" rhyper.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" stats.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.36/CORE" z.c
z.c:12:13: warning: ‘sccsfid’ defined but not used [-Wunused-variable]
12 | static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85";
| ^~~~~~~
ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o
: libaltree-cutils.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[4]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so
arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \
-lm -lpthread -lgsl -lblas \
chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so
Manifying 1 pod document
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
cp progs/altree blib/script/altree
cp progs/altree-add-S blib/script/altree-add-S
cp progs/altree-convert blib/script/altree-convert
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert
Manifying 3 pod documents
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
make -j4 test TEST_VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
No tests defined for ALTree::CUtils extension.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t
t/ALTree-CUtils.t .......
1..1
ok 1 - use ALTree::CUtils;
ok
t/double_permutation.t ..
1..3
ok 1 - use ALTree::CUtils;
ok 2 - undef when bad args
ok 3 - double_permutation
ok
All tests successful.
Files=2, Tests=4, 0 wallclock secs ( 0.00 usr 0.00 sys + 0.12 cusr 0.00 csys = 0.12 CPU)
Result: PASS
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/ALTree.t ..
1..1
ok 1 - use ALTree::Import;
ok
All tests successful.
Files=1, Tests=1, 0 wallclock secs ( 0.00 usr 0.00 sys + 0.08 cusr 0.00 csys = 0.08 CPU)
Result: PASS
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
Manifying 3 pod documents
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/ALTree/CUtils/CUtils.so
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/ALTree/CUtils/autosplit.ix
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Nanova.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SiteCollection.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SitePerTree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Utils.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SiteSensPerTree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Node.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SitePerForet.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SiteSensPerForet.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Tree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SiteSens.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Site.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Foret.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Input.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Chi2.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Sens.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Base.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/to_rewrite.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Import.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/CUtils.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree-add-S.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree-convert.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree-add-S
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree-convert
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_missing -a
dh_dwz -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/ALTree/CUtils/CUtils.so was not linked against libblas.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.2-2_armhf.deb'.
dpkg-deb: building package 'altree' in '../altree_1.3.2-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../altree_1.3.2-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../altree_1.3.2-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-12-01T07:08:45Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
altree_1.3.2-2_armhf.changes:
-----------------------------
Format: 1.8
Date: Wed, 29 Nov 2023 11:13:27 +0100
Source: altree
Binary: altree altree-dbgsym
Architecture: armhf
Version: 1.3.2-2
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
altree - program to perform phylogeny-based association and localization a
Changes:
altree (1.3.2-2) unstable; urgency=medium
.
* Alternative to libblas-dev | libblas.so
* Drop libatlas3-base from Recommends
* Standards-Version: 4.6.2 (routine-update)
* Set upstream metadata fields: Repository-Browse.
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688ae3e3f2fbf040bdc08d49c0746a1297551133 341788 altree_1.3.2-2_armhf.deb
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36d011370a544d04a589ae9b7ff664b6c75e35df3efc990be39580f0a0b9be1d 8538 altree_1.3.2-2_armhf.buildinfo
328a3ac26fdb4c2be68b3d5c0769b4acda61b9174acdd1e178f1f288a0cc84bc 341788 altree_1.3.2-2_armhf.deb
Files:
c6b30eedf1ee7b4d0177a0b01b4ecbbe 328924 debug optional altree-dbgsym_1.3.2-2_armhf.deb
f466bd4f833876e1eeae5b32dfb66640 8538 science optional altree_1.3.2-2_armhf.buildinfo
344732253b34aee591488a12476b93eb 341788 science optional altree_1.3.2-2_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: altree
Binary: altree altree-dbgsym
Architecture: armhf
Version: 1.3.2-2
Checksums-Md5:
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Checksums-Sha1:
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Checksums-Sha256:
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328a3ac26fdb4c2be68b3d5c0769b4acda61b9174acdd1e178f1f288a0cc84bc 341788 altree_1.3.2-2_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Fri, 01 Dec 2023 07:08:44 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-13),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.2),
bash (= 5.2.15-2),
bash-completion (= 1:2.11-8),
binutils (= 2.41-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
binutils-common (= 2.41-6+rpi1),
bsdextrautils (= 2.39.2-6),
bsdutils (= 1:2.39.2-6),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
coreutils (= 9.1-1),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-10+rpi1),
cpp-13 (= 13.2.0-5+rpi1),
dash (= 0.5.12-6),
debconf (= 1.5.82),
debhelper (= 13.11.8),
debianutils (= 5.14),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.1+rpi1),
dpkg-dev (= 1.22.1+rpi1),
dwz (= 0.15-1),
fig2dev (= 1:3.2.9-3),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
fontconfig-config (= 2.14.2-6),
fonts-lmodern (= 2.005-1),
fonts-urw-base35 (= 20200910-7),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-5+rpi1),
gawk (= 1:5.2.1-2),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-10+rpi1),
gcc-12-base (= 12.3.0-10+rpi1),
gcc-13 (= 13.2.0-5+rpi1),
gcc-13-base (= 13.2.0-5+rpi1),
gettext (= 0.21-13),
gettext-base (= 0.21-13),
ghostscript (= 10.02.1~dfsg-1),
grep (= 3.11-3),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
hostname (= 3.23+nmu1),
init-system-helpers (= 1.65.2),
intltool-debian (= 0.35.0+20060710.6),
latex-make (= 2.4.3-1),
libacl1 (= 2.3.1-3),
libapache-pom-java (= 29-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 13.2.0-5+rpi1),
libatomic1 (= 13.2.0-5+rpi1),
libattr1 (= 1:2.5.1-4),
libaudit-common (= 1:3.1.1-1),
libaudit1 (= 1:3.1.1-1),
libavahi-client3 (= 0.8-13),
libavahi-common-data (= 0.8-13),
libavahi-common3 (= 0.8-13),
libbinutils (= 2.41-6+rpi1),
libblas-dev (= 3.11.0-2),
libblas3 (= 3.11.0-2),
libblkid1 (= 2.39.2-6),
libbrotli1 (= 1.1.0-2),
libbsd0 (= 0.11.7-4),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.37-12+rpi2),
libc-dev-bin (= 2.37-12+rpi2),
libc6 (= 2.37-12+rpi2),
libc6-dev (= 2.37-12+rpi2),
libcairo2 (= 1.18.0-1),
libcap-ng0 (= 0.8.3-1+b1),
libcap2 (= 1:2.66-4),
libcc1-0 (= 13.2.0-5+rpi1),
libcom-err2 (= 1.47.0-2),
libcommons-logging-java (= 1.2-4),
libcommons-parent-java (= 56-1),
libcrypt-dev (= 1:4.4.36-2),
libcrypt1 (= 1:4.4.36-2),
libctf-nobfd0 (= 2.41-6+rpi1),
libctf0 (= 2.41-6+rpi1),
libcups2 (= 2.4.7-1),
libdb5.3 (= 5.3.28+dfsg2-2),
libdbus-1-3 (= 1.14.10-3),
libdebconfclient0 (= 0.271),
libdebhelper-perl (= 13.11.8),
libdeflate0 (= 1.18-1),
libdpkg-perl (= 1.22.1+rpi1),
libelf1 (= 0.188-2.1+rpi1),
libexpat1 (= 2.5.0-2),
libffi8 (= 3.4.4-1),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libfontbox-java (= 1:1.8.16-4),
libfontconfig1 (= 2.14.2-6),
libfontenc1 (= 1:1.1.4-1),
libfreetype6 (= 2.13.2+dfsg-1),
libgcc-12-dev (= 12.3.0-10+rpi1),
libgcc-13-dev (= 13.2.0-5+rpi1),
libgcc-s1 (= 13.2.0-5+rpi1),
libgcrypt20 (= 1.10.2-3),
libgdbm-compat4 (= 1.23-3),
libgdbm6 (= 1.23-3),
libglib2.0-0 (= 2.78.1-4),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30 (= 3.8.1-4),
libgomp1 (= 13.2.0-5+rpi1),
libgpg-error0 (= 1.47-2),
libgraphite2-3 (= 1.3.14-1),
libgs-common (= 10.02.1~dfsg-1),
libgs10 (= 10.02.1~dfsg-1),
libgs10-common (= 10.02.1~dfsg-1),
libgsl-dev (= 2.7.1+dfsg-6),
libgsl27 (= 2.7.1+dfsg-6),
libgslcblas0 (= 2.7.1+dfsg-6),
libgssapi-krb5-2 (= 1.20.1-4),
libharfbuzz0b (= 8.0.1-1),
libhogweed6 (= 3.9.1-2),
libice6 (= 2:1.0.10-1),
libicu72 (= 72.1-4),
libidn12 (= 1.41-1+b1),
libidn2-0 (= 2.3.4-1),
libijs-0.35 (= 0.35-15.1),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libjbig0 (= 2.1-6.1),
libjbig2dec0 (= 0.19-3+b2),
libjpeg62-turbo (= 1:2.1.5-2),
libk5crypto3 (= 1.20.1-4),
libkeyutils1 (= 1.6.3-2),
libkpathsea6 (= 2023.20230311.66589-8),
libkrb5-3 (= 1.20.1-4),
libkrb5support0 (= 1.20.1-4),
liblcms2-2 (= 2.14-2),
liblerc4 (= 4.0.0+ds-3),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma5 (= 5.4.4-0.1),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmath-tamuanova-perl (= 1.0.2-3+b1),
libmd0 (= 1.1.0-1),
libmount1 (= 2.39.2-6),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libncursesw6 (= 6.4+20231016-1),
libnetpbm11 (= 2:11.03.06-1),
libnettle8 (= 3.9.1-2),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libopenjp2-7 (= 2.5.0-2),
libp11-kit0 (= 0.25.0-5),
libpam-modules (= 1.5.2-9.1),
libpam-modules-bin (= 1.5.2-9.1),
libpam-runtime (= 1.5.2-9.1),
libpam0g (= 1.5.2-9.1),
libpaper-utils (= 1.1.29),
libpaper1 (= 1.1.29),
libpcre2-8-0 (= 10.42-4),
libpdfbox-java (= 1:1.8.16-4),
libperl5.36 (= 5.36.0-9),
libpipeline1 (= 1.5.7-1),
libpixman-1-0 (= 0.42.2-1),
libpng16-16 (= 1.6.40-2),
libpotrace0 (= 1.16-2),
libptexenc1 (= 2023.20230311.66589-8),
libpython3-stdlib (= 3.11.4-5),
libpython3.11-minimal (= 3.11.6-3),
libpython3.11-stdlib (= 3.11.6-3),
libreadline8 (= 8.2-1.3),
libseccomp2 (= 2.5.4-1+rpi1+b1),
libselinux1 (= 3.5-1),
libsframe1 (= 2.41-6+rpi1),
libsharpyuv0 (= 1.3.2-0.3),
libsigsegv2 (= 2.14-1),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.39.2-6),
libsqlite3-0 (= 3.43.2-1),
libssl3 (= 3.0.11-1),
libstdc++-13-dev (= 13.2.0-5+rpi1),
libstdc++6 (= 13.2.0-5+rpi1),
libsub-override-perl (= 0.09-4),
libsynctex2 (= 2023.20230311.66589-8),
libsystemd0 (= 254.5-1+rpi1),
libtamuanova-0.2 (= 0.2-5+b1),
libtasn1-6 (= 4.19.0-3),
libteckit0 (= 2.5.11+ds1-1),
libtest-deep-perl (= 1.204-1),
libtexlua53-5 (= 2023.20230311.66589-8),
libtiff6 (= 4.5.1+git230720-1),
libtinfo6 (= 6.4+20231016-1),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtool (= 2.4.7-7),
libubsan1 (= 13.2.0-5+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 254.5-1+rpi1),
libunistring5 (= 1.1-2),
libuuid1 (= 2.39.2-6),
libwebp7 (= 1.3.2-0.3),
libx11-6 (= 2:1.8.7-1),
libx11-data (= 2:1.8.7-1),
libxau6 (= 1:1.0.9-1),
libxaw7 (= 2:1.0.14-1),
libxcb-render0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxi6 (= 2:1.8-1),
libxml2 (= 2.9.14+dfsg-1.3),
libxmu6 (= 2:1.1.3-3),
libxpm4 (= 1:3.5.17-1),
libxrender1 (= 1:0.9.10-1.1),
libxt6 (= 1:1.2.1-1.1),
libzstd1 (= 1.5.5+dfsg2-2),
libzzip-0-13 (= 0.13.72+dfsg.1-1.1),
linux-libc-dev (= 6.5.6-1+rpi1),
login (= 1:4.13+dfsg1-3),
lsb-base (= 11.6+rpi1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.0-1),
mawk (= 1.3.4.20230808-1),
media-types (= 10.1.0),
ncurses-base (= 6.4+20231016-1),
ncurses-bin (= 6.4+20231016-1),
netpbm (= 2:11.03.06-1),
patch (= 2.7.6-7),
perl (= 5.36.0-9),
perl-base (= 5.36.0-9),
perl-modules-5.36 (= 5.36.0-9),
po-debconf (= 1.0.21+nmu1),
poppler-data (= 0.4.12-1),
preview-latex-style (= 13.2-1),
python3 (= 3.11.4-5),
python3-minimal (= 3.11.4-5),
python3.11 (= 3.11.6-3),
python3.11-minimal (= 3.11.6-3),
readline-common (= 8.2-1.3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-3),
t1utils (= 1.41-4),
tar (= 1.34+dfsg-1.2),
tex-common (= 6.18),
texlive-base (= 2023.20231007-1),
texlive-binaries (= 2023.20230311.66589-8),
texlive-fonts-recommended (= 2023.20231007-1),
texlive-lang-french (= 2023.20231007-1),
texlive-latex-base (= 2023.20231007-1),
texlive-latex-extra (= 2023.20231007-2),
texlive-latex-recommended (= 2023.20231007-1),
texlive-pictures (= 2023.20231007-1),
tzdata (= 2023c-10),
ucf (= 3.0043+nmu1),
usr-is-merged (= 37),
util-linux (= 2.39.2-6),
x11-common (= 1:7.7+23),
xdg-utils (= 1.1.3-4.1),
xfonts-encodings (= 1:1.0.4-2.2),
xfonts-utils (= 1:7.7+6),
xz-utils (= 5.4.4-0.1),
zlib1g (= 1:1.2.13.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1701252807"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
altree-dbgsym_1.3.2-2_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 328924 bytes: control archive=532 bytes.
366 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: altree-dbgsym
Source: altree
Version: 1.3.2-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 338
Depends: altree (= 1.3.2-2)
Section: debug
Priority: optional
Description: debug symbols for altree
Build-Ids: 81e36bdd7c2ff506b7b96bd6311f7df0f5449cec
drwxr-xr-x root/root 0 2023-11-29 10:13 ./
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/debug/.build-id/81/
-rw-r--r-- root/root 335160 2023-11-29 10:13 ./usr/lib/debug/.build-id/81/e36bdd7c2ff506b7b96bd6311f7df0f5449cec.debug
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/share/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-11-29 10:13 ./usr/share/doc/altree-dbgsym -> altree
altree_1.3.2-2_armhf.deb
------------------------
new Debian package, version 2.0.
size 341788 bytes: control archive=1736 bytes.
841 bytes, 16 lines control
2864 bytes, 35 lines md5sums
Package: altree
Version: 1.3.2-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 550
Depends: libblas3 | libblas.so.3, libc6 (>= 2.34), libgsl27 (>= 2.7.1), perl (>= 5.36.0-9), perlapi-5.36.0, libmath-tamuanova-perl
Recommends: libopenblas0 | libblis4 | libmkl-rt | libblas.so.3
Suggests: altree-examples
Section: science
Priority: optional
Homepage: https://gitlab.inria.fr/NGS/ALTree
Description: program to perform phylogeny-based association and localization analysis
ALTree was designed to perform association detection and localization of
susceptibility sites using haplotype phylogenetic trees: first, it allows the
detection of an association between a candidate gene and a disease, and second,
it enables to make hypothesis about the susceptibility loci.
drwxr-xr-x root/root 0 2023-11-29 10:13 ./
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/bin/
-rwxr-xr-x root/root 55855 2023-11-29 10:13 ./usr/bin/altree
-rwxr-xr-x root/root 15365 2023-11-29 10:13 ./usr/bin/altree-add-S
-rwxr-xr-x root/root 22801 2023-11-29 10:13 ./usr/bin/altree-convert
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/
-rw-r--r-- root/root 342 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Base.pm
-rw-r--r-- root/root 3081 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/CUtils.pm
-rw-r--r-- root/root 2897 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Chi2.pm
-rw-r--r-- root/root 2817 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Foret.pm
-rw-r--r-- root/root 2026 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Import.pm
-rw-r--r-- root/root 24521 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Input.pm
-rw-r--r-- root/root 2371 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Nanova.pm
-rw-r--r-- root/root 5965 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Node.pm
-rw-r--r-- root/root 1455 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Sens.pm
-rw-r--r-- root/root 1895 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Site.pm
-rw-r--r-- root/root 1044 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SiteCollection.pm
-rw-r--r-- root/root 3569 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SitePerForet.pm
-rw-r--r-- root/root 876 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SitePerTree.pm
-rw-r--r-- root/root 1287 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SiteSens.pm
-rw-r--r-- root/root 905 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SiteSensPerForet.pm
-rw-r--r-- root/root 2781 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/SiteSensPerTree.pm
-rw-r--r-- root/root 4804 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Tree.pm
-rw-r--r-- root/root 1467 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/Utils.pm
-rw-r--r-- root/root 9288 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/ALTree/to_rewrite.pm
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/ALTree/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/ALTree/CUtils/
-rw-r--r-- root/root 60880 2023-11-29 10:13 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/ALTree/CUtils/CUtils.so
-rw-r--r-- root/root 95 2023-11-29 10:13 ./usr/lib/arm-linux-gnueabihf/perl5/5.36/auto/ALTree/CUtils/autosplit.ix
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/share/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/share/doc-base/
-rw-r--r-- root/root 513 2023-11-29 10:13 ./usr/share/doc-base/altree.altree
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/share/doc/altree/
-rw-r--r-- root/root 1441 2021-09-17 14:32 ./usr/share/doc/altree/README
-rw-r--r-- root/root 321 2023-11-29 10:13 ./usr/share/doc/altree/README.test
-rw-r--r-- root/root 957 2023-11-29 10:13 ./usr/share/doc/altree/changelog.Debian.gz
-rw-r--r-- root/root 2601 2021-09-17 14:32 ./usr/share/doc/altree/changelog.gz
-rw-r--r-- root/root 1223 2023-11-29 10:13 ./usr/share/doc/altree/copyright
-rw-r--r-- root/root 281038 2023-11-29 10:13 ./usr/share/doc/altree/manual.pdf
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/share/man/
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/share/man/man1/
-rw-r--r-- root/root 1995 2023-11-29 10:13 ./usr/share/man/man1/altree-add-S.1p.gz
-rw-r--r-- root/root 2059 2023-11-29 10:13 ./usr/share/man/man1/altree-convert.1p.gz
-rw-r--r-- root/root 3079 2023-11-29 10:13 ./usr/share/man/man1/altree.1p.gz
drwxr-xr-x root/root 0 2023-11-29 10:13 ./usr/share/man/man3/
-rw-r--r-- root/root 1830 2023-11-29 10:13 ./usr/share/man/man3/ALTree::CUtils.3pm.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 16812
Build-Time: 19
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 295
Job: altree_1.3.2-2
Machine Architecture: arm64
Package: altree
Package-Time: 323
Source-Version: 1.3.2-2
Space: 16812
Status: successful
Version: 1.3.2-2
--------------------------------------------------------------------------------
Finished at 2023-12-01T07:08:45Z
Build needed 00:05:23, 16812k disk space