altree →
1.3.2-1 →
armhf → 2021-09-20 06:02:39
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd
+==============================================================================+
| altree 1.3.2-1 (armhf) Mon, 20 Sep 2021 05:36:35 +0000 |
+==============================================================================+
Package: altree
Version: 1.3.2-1
Source Version: 1.3.2-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-411bf793-b806-457c-ab3e-3487327da1dc' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.8 MB in 28s (906 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'altree' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/altree.git
Please use:
git clone https://salsa.debian.org/med-team/altree.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 620 kB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main altree 1.3.2-1 (dsc) [2270 B]
Get:2 http://172.17.0.1/private bookworm-staging/main altree 1.3.2-1 (tar) [611 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main altree 1.3.2-1 (diff) [7108 B]
Fetched 620 kB in 0s (1404 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/altree-uLZ9Ht/altree-1.3.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/altree-uLZ9Ht' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-UUlOPB/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-UUlOPB/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-UUlOPB/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2921 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 78 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12488 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev, libtest-deep-perl, fig2dev
Filtered Build-Depends: bash-completion, debhelper-compat (= 13), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libblas-dev, libtest-deep-perl, fig2dev
dpkg-deb: building package 'sbuild-build-depends-altree-dummy' in '/<<BUILDDIR>>/resolver-UUlOPB/apt_archive/sbuild-build-depends-altree-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-altree-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ Sources [596 B]
Get:5 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ Packages [676 B]
Fetched 2605 B in 1s (3606 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install altree build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdextrautils
debhelper dh-autoreconf dh-strip-nondeterminism dwz fig2dev file
fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base
ghostscript groff-base intltool-debian latex-make libapache-pom-java
libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3
libblas-dev libblas3 libbrotli1 libbsd0 libcairo2 libcommons-logging-java
libcommons-parent-java libcups2 libdbus-1-3 libdebhelper-perl libdeflate0
libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java
libfontconfig1 libfreetype6 libglib2.0-0 libgnutls30 libgraphite2-3 libgs9
libgs9-common libgsl-dev libgsl25 libgslcblas0 libharfbuzz0b libice6
libicu67 libidn12 libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo
libkpathsea6 liblcms2-2 libmagic-mgc libmagic1 libmath-tamuanova-perl libmd0
libmpdec3 libnetpbm10 libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java
libpipeline1 libpixman-1-0 libpng16-16 libptexenc1 libpython3-stdlib
libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsm6
libsub-override-perl libsynctex2 libtamuanova-0.2 libteckit0
libtest-deep-perl libtexlua53 libtexluajit2 libtiff5 libtool libuchardet0
libwebp6 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4 libxrender1 libxt6
libzzip-0-13 m4 man-db media-types netpbm po-debconf poppler-data
preview-latex-style python3 python3-minimal python3.9 python3.9-minimal
sensible-utils t1utils tex-common texlive-base texlive-binaries
texlive-fonts-recommended texlive-lang-french texlive-latex-base
texlive-latex-extra texlive-latex-recommended texlive-pictures ucf
x11-common xdg-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make xfig fonts-freefont-otf
| fonts-freefont-ttf fonts-texgyre gawk-doc gettext-doc libasprintf-dev
libgettextpo-dev ghostscript-x groff liblapack-doc libavalon-framework-java
libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java
cups-common gnutls-bin gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info
| gsl-ref-html liblcms2-utils libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl poppler-utils
fonts-japanese-mincho | fonts-ipafont-mincho fonts-japanese-gothic
| fonts-ipafont-gothic fonts-arphic-ukai fonts-arphic-uming fonts-nanum
python3-doc python3-tk python3-venv python3.9-venv python3.9-doc
binfmt-support perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc
texlive-latex-base-doc python3-pygments icc-profiles libfile-which-perl
libspreadsheet-parseexcel-perl texlive-latex-extra-doc
texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex
ruby-tcltk | libtcltk-ruby texlive-pictures-doc vprerex
Recommended packages:
curl | wget | lynx inkscape dbus libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs fonts-droid-fallback ca-certificates
libltdl-dev libmail-sendmail-perl lmodern dvisvgm tex-gyre tipa
texlive-plain-generic ruby | ruby-interpreter tk libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdextrautils
debhelper dh-autoreconf dh-strip-nondeterminism dwz fig2dev file
fontconfig-config fonts-lmodern fonts-urw-base35 gawk gettext gettext-base
ghostscript groff-base intltool-debian latex-make libapache-pom-java
libarchive-zip-perl libavahi-client3 libavahi-common-data libavahi-common3
libblas-dev libblas3 libbrotli1 libbsd0 libcairo2 libcommons-logging-java
libcommons-parent-java libcups2 libdbus-1-3 libdebhelper-perl libdeflate0
libelf1 libexpat1 libfile-stripnondeterminism-perl libfontbox-java
libfontconfig1 libfreetype6 libglib2.0-0 libgraphite2-3 libgs9 libgs9-common
libgsl-dev libgsl25 libgslcblas0 libharfbuzz0b libice6 libicu67 libidn12
libijs-0.35 libjbig0 libjbig2dec0 libjpeg62-turbo libkpathsea6 liblcms2-2
libmagic-mgc libmagic1 libmath-tamuanova-perl libmd0 libmpdec3 libnetpbm10
libopenjp2-7 libpaper-utils libpaper1 libpdfbox-java libpipeline1
libpixman-1-0 libpng16-16 libptexenc1 libpython3-stdlib libpython3.9-minimal
libpython3.9-stdlib libsigsegv2 libsm6 libsub-override-perl libsynctex2
libtamuanova-0.2 libteckit0 libtest-deep-perl libtexlua53 libtexluajit2
libtiff5 libtool libuchardet0 libwebp6 libx11-6 libx11-data libxau6 libxaw7
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6
libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db media-types netpbm
po-debconf poppler-data preview-latex-style python3 python3-minimal
python3.9 python3.9-minimal sbuild-build-depends-altree-dummy sensible-utils
t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended
texlive-lang-french texlive-latex-base texlive-latex-extra
texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils
The following packages will be upgraded:
libgnutls30
1 upgraded, 133 newly installed, 0 to remove and 77 not upgraded.
Need to get 196 MB of archives.
After this operation, 539 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-UUlOPB/apt_archive ./ sbuild-build-depends-altree-dummy 0.invalid.0 [964 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-1 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf gawk armhf 1:5.1.0-1 [533 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf poppler-data all 0.4.11-1 [1608 kB]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.7-2+rpi1 [794 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.2.10-2 [73.4 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.7-2+rpi1 [1631 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.7-2+rpi1 [1618 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.7-2+rpi1 [480 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf tex-common all 6.17 [53.6 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libgnutls30 armhf 3.7.2-2 [1273 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf bash-completion all 1:2.11-3 [234 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.1 [192 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [580 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.1 [1056 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf fonts-urw-base35 all 20200910-1 [6367 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libgs9-common all 9.54.0~dfsg-5 [740 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf libavahi-common-data armhf 0.8-5 [123 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf libavahi-common3 armhf 0.8-5 [55.3 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf libdbus-1-3 armhf 1.12.20-2 [193 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf libavahi-client3 armhf 0.8-5 [57.9 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf libcups2 armhf 2.3.3op2-7 [312 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libidn12 armhf 1.38-3 [80.9 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libijs-0.35 armhf 0.35-15 [14.7 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libjbig2dec0 armhf 0.19-3 [58.3 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.4.0-3 [150 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.7-2 [44.1 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.2.0-1 [268 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libgs9 armhf 9.54.0~dfsg-5 [1900 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf ghostscript armhf 9.54.0~dfsg-5 [98.2 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libnetpbm10 armhf 2:10.0-15.4 [75.4 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf netpbm armhf 2:10.0-15.4 [875 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf fig2dev armhf 1:3.2.8b-1 [391 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf fonts-lmodern all 2.004.5-6.1 [4540 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf latex-make all 2.4.2-1 [725 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libapache-pom-java all 18-1 [4676 B]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.9.0-3 [108 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libblas-dev armhf 3.9.0-3 [113 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.3-3 [27.2 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-1 [311 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-1 [705 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf libcommons-parent-java all 43-1 [10.8 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf libcommons-logging-java all 1.2-2 [62.2 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf libfontbox-java all 1:1.8.16-2 [211 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.68.4-1 [1197 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.6+dfsg-2 [79.5 kB]
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Get:103 http://172.17.0.1/private bookworm-staging/main armhf libgsl-dev armhf 2.6+dfsg-2 [950 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf libkpathsea6 armhf 2020.20200327.54578-7 [163 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf libtamuanova-0.2 armhf 0.2-4+b3 [7620 B]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf libmath-tamuanova-perl armhf 1.0.2-2+b8 [12.4 kB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf libpdfbox-java all 1:1.8.16-2 [5205 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf libptexenc1 armhf 2020.20200327.54578-7 [61.2 kB]
Get:112 http://172.17.0.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:113 http://172.17.0.1/private bookworm-staging/main armhf libsynctex2 armhf 2020.20200327.54578-7 [70.2 kB]
Get:114 http://172.17.0.1/private bookworm-staging/main armhf libteckit0 armhf 2.5.10+ds1-3 [252 kB]
Get:115 http://172.17.0.1/private bookworm-staging/main armhf libtest-deep-perl all 1.130-1 [49.3 kB]
Get:116 http://172.17.0.1/private bookworm-staging/main armhf libtexlua53 armhf 2020.20200327.54578-7 [102 kB]
Get:117 http://172.17.0.1/private bookworm-staging/main armhf libtexluajit2 armhf 2020.20200327.54578-7 [208 kB]
Get:118 http://172.17.0.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:119 http://172.17.0.1/private bookworm-staging/main armhf libxmu6 armhf 2:1.1.2-2+b3 [52.1 kB]
Get:120 http://172.17.0.1/private bookworm-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:121 http://172.17.0.1/private bookworm-staging/main armhf libxaw7 armhf 2:1.0.13-1.1 [166 kB]
Get:122 http://172.17.0.1/private bookworm-staging/main armhf libxi6 armhf 2:1.7.10-1 [77.9 kB]
Get:123 http://172.17.0.1/private bookworm-staging/main armhf libzzip-0-13 armhf 0.13.72+dfsg.1-1.1 [54.3 kB]
Get:124 http://172.17.0.1/private bookworm-staging/main armhf preview-latex-style all 12.2-1 [201 kB]
Get:125 http://172.17.0.1/private bookworm-staging/main armhf t1utils armhf 1.41-4 [52.3 kB]
Get:126 http://172.17.0.1/private bookworm-staging/main armhf texlive-binaries armhf 2020.20200327.54578-7 [6900 kB]
Get:127 http://172.17.0.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:128 http://172.17.0.1/private bookworm-staging/main armhf texlive-base all 2020.20210202-3 [20.8 MB]
Get:129 http://172.17.0.1/private bookworm-staging/main armhf texlive-fonts-recommended all 2020.20210202-3 [5002 kB]
Get:130 http://172.17.0.1/private bookworm-staging/main armhf texlive-lang-french all 2020.20210202-2 [67.0 MB]
Get:131 http://172.17.0.1/private bookworm-staging/main armhf texlive-latex-base all 2020.20210202-3 [1120 kB]
Get:132 http://172.17.0.1/private bookworm-staging/main armhf texlive-latex-recommended all 2020.20210202-3 [14.5 MB]
Get:133 http://172.17.0.1/private bookworm-staging/main armhf texlive-pictures all 2020.20210202-3 [6743 kB]
Get:134 http://172.17.0.1/private bookworm-staging/main armhf texlive-latex-extra all 2020.20210202-3 [13.7 MB]
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invoke-rc.d: could not determine current runlevel
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tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper
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Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
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W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-13+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.2.4 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1+rpi1 base-passwd_3.5.51 bash_5.1-2 bash-completion_1:2.11-3 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bsdextrautils_2.37.2-1 bsdutils_1:2.36.1-8 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.77 debhelper_13.5.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.2-2 fakeroot_1.25.3-1.1 fig2dev_1:3.2.8b-1 file_1:5.39-3 findutils_4.8.0-1 fontconfig-config_2.13.1-4.2 fonts-lmodern_2.004.5-6.1 fonts-urw-base35_20200910-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gawk_1:5.1.0-1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 ghostscript_9.54.0~dfsg-5 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 latex-make_2.4.2-1 libacl1_2.2.53-10 libapache-pom-java_18-1 libapt-pkg6.0_2.2.4 libarchive-zip-perl_1.68-1 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libavahi-client3_0.8-5 libavahi-common-data_0.8-5 libavahi-common3_0.8-5 libbinutils_2.35.2-2+rpi1 libblas-dev_3.9.0-3 libblas3_3.9.0-3 libblkid1_2.36.1-8 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-13+rpi1 libc-dev-bin_2.31-13+rpi1 libc6_2.31-13+rpi1 libc6-dev_2.31-13+rpi1 libcairo2_1.16.0-5 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 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python3.9_3.9.7-2+rpi1 python3.9-minimal_3.9.7-2+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 sbuild-build-depends-altree-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.17 sysvinit-utils_2.96-7 t1utils_1.41-4 tar_1.34+dfsg-1 tex-common_6.17 texlive-base_2020.20210202-3 texlive-binaries_2020.20200327.54578-7 texlive-fonts-recommended_2020.20210202-3 texlive-lang-french_2020.20210202-2 texlive-latex-base_2020.20210202-3 texlive-latex-extra_2020.20210202-3 texlive-latex-recommended_2020.20210202-3 texlive-pictures_2020.20210202-3 tzdata_2021a-1 ucf_3.0043 util-linux_2.36.1-8 x11-common_1:7.7+23 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.StEg5T8I/trustedkeys.kbx': General error
gpgv: Signature made Fri Sep 17 16:28:36 2021 UTC
gpgv: using RSA key 13E25E4970C4638BE7ACB8119647DE637EC7B751
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./altree_1.3.2-1.dsc
dpkg-source: info: extracting altree in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking altree_1.3.2.orig.tar.gz
dpkg-source: info: unpacking altree_1.3.2-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-411bf793-b806-457c-ab3e-3487327da1dc
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package altree
dpkg-buildpackage: info: source version 1.3.2-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C Documentation distclean || true
make[2]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
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make[2]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
/usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Checking if your kit is complete...
Warning: the following files are missing in your kit:
CUtils/c_sources/MYMETA.json
CUtils/MYMETA.json
MYMETA.json
Please inform the author.
MakeMaker (v7.44)
Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib'
Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib'
Generating a Unix-style Makefile
Writing Makefile for ALTree::CUtils
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for ALTree::CUtils
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for altree
Writing MYMETA.yml and MYMETA.json
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C Documentation pdf
make[2]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE
make[3]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
======> building manual.pdf <======
Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}'
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Chapter 1.
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[]\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10.
Chapter 2.
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[]\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-
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Chapter 3.
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[]|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of
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Chapter 4.
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\T1/ptm/m/n/10.95 Examples: $[]$ $[]$
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Chapter 5.
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[]
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Chapter 6.
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[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run
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Chapter 7.
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Chapter 1.
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Chapter 1.
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Chapter 1.
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make[4]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" chisq.c
chmod 644 "CUtils.bs"
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" double_permutation.c
cp ALTree/Site.pm blib/lib/ALTree/Site.pm
cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm
cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm
cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm
cp ALTree/Node.pm blib/lib/ALTree/Node.pm
cp ALTree/Input.pm blib/lib/ALTree/Input.pm
cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm
cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm
cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm
cp ALTree/Import.pm blib/lib/ALTree/Import.pm
cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm
cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm
cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm
cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm
cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm
cp ALTree/Base.pm blib/lib/ALTree/Base.pm
cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm
cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm
cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm
AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils)
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" fisher.c
"/usr/bin/perl" "/usr/share/perl/5.32.1/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.32/ExtUtils/typemap' CUtils.xs > CUtils.xsc
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" mt19937ar.c
Please specify prototyping behavior for CUtils.xs (see perlxs manual)
mv CUtils.xsc CUtils.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" myrand.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" resampling.c
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" rhyper.c
arm-linux-gnueabihf-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" CUtils.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" stats.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.32/CORE" z.c
z.c:12:13: warning: 'sccsfid' defined but not used [-Wunused-variable]
12 | static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85";
| ^~~~~~~
ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o
: libaltree-cutils.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[4]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so
arm-linux-gnueabihf-gcc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \
-lm -lpthread -lgsl -lblas \
chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so
Manifying 1 pod document
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
cp progs/altree blib/script/altree
cp progs/altree-add-S blib/script/altree-add-S
cp progs/altree-convert blib/script/altree-convert
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert
Manifying 3 pod documents
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
make -j4 test TEST_VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
No tests defined for ALTree::CUtils extension.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t
t/ALTree-CUtils.t .......
1..1
ok 1 - use ALTree::CUtils;
ok
t/double_permutation.t ..
1..3
ok 1 - use ALTree::CUtils;
ok 2 - undef when bad args
ok 3 - double_permutation
ok
All tests successful.
Files=2, Tests=4, 2 wallclock secs ( 0.17 usr 0.03 sys + 1.24 cusr 0.10 csys = 1.54 CPU)
Result: PASS
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/ALTree.t ..
1..1
ok 1 - use ALTree::Import;
ok
All tests successful.
Files=1, Tests=1, 2 wallclock secs ( 0.15 usr 0.02 sys + 1.00 cusr 0.08 csys = 1.25 CPU)
Result: PASS
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
Manifying 3 pod documents
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/auto/ALTree/CUtils/CUtils.so
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/auto/ALTree/CUtils/autosplit.ix
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Site.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Foret.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Nanova.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Utils.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Node.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Input.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/CUtils.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/SiteCollection.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/to_rewrite.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Chi2.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Import.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/SiteSensPerTree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/SitePerTree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Tree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/SiteSensPerForet.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/SiteSens.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Base.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/SitePerForet.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Sens.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree-add-S.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree-convert.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree-convert
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree-add-S
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_missing -a
dh_dwz -a -a
dh_strip -a -a
dh_makeshlibs -a -a
dh_shlibdeps -a -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/arm-linux-gnueabihf/perl5/5.32/auto/ALTree/CUtils/CUtils.so was not linked against libblas.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.2-1_armhf.deb'.
dpkg-deb: building package 'altree' in '../altree_1.3.2-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../altree_1.3.2-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-09-20T06:02:32Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
altree_1.3.2-1_armhf.changes:
-----------------------------
Format: 1.8
Date: Fri, 17 Sep 2021 18:26:18 +0200
Source: altree
Binary: altree altree-dbgsym
Architecture: armhf
Version: 1.3.2-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Vincent Danjean <vdanjean@debian.org>
Description:
altree - program to perform phylogeny-based association and localization a
Closes: 994474
Changes:
altree (1.3.2-1) unstable; urgency=medium
.
[ Andreas Tille ]
* Replace dummy package libopenblas-base by libopenblas0
Closes: #994474
* Fix watch file
* Standards-Version: 4.6.0 (routine-update)
* Set upstream metadata fields: Repository, Repository-Browse.
* Apply multi-arch hints.
+ altree-examples: Add Multi-Arch: foreign.
* Do not fail in clean target if latex-make is not installed on local
machine
.
[ Vincent Danjean ]
* New upstream version
- debian patches applied
- XS files refreshed
Checksums-Sha1:
941071cd3bd164ff65017b9a2d024a30c333d52b 311760 altree-dbgsym_1.3.2-1_armhf.deb
1948d135b572eeecf246b458504b2c1f114b08bc 8135 altree_1.3.2-1_armhf.buildinfo
857c4924d55060eb95397628c71e9d057fa2d6d9 333912 altree_1.3.2-1_armhf.deb
Checksums-Sha256:
6a81332a0763c6b988e1de3c1da7c604aa6760d9fef84c141eeaeb2d7e157347 311760 altree-dbgsym_1.3.2-1_armhf.deb
dcd0825e98cfe634333f7d374b5e258f931d16f0981ae4bbb4a06ebb4f7b4f48 8135 altree_1.3.2-1_armhf.buildinfo
c8c55d278327d094c6904a2162cc7e9f929b39cc4836083ac6665c7d7ea389f9 333912 altree_1.3.2-1_armhf.deb
Files:
2dec6dcd564cb548fe4cf7bc7766d159 311760 debug optional altree-dbgsym_1.3.2-1_armhf.deb
af1640e1dda5a92abe6ad99354c6eb84 8135 science optional altree_1.3.2-1_armhf.buildinfo
1d5c0ad483c0eb5e5a4f8ca4ee3dc59c 333912 science optional altree_1.3.2-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
altree-dbgsym_1.3.2-1_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 311760 bytes: control archive=532 bytes.
366 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: altree-dbgsym
Source: altree
Version: 1.3.2-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 321
Depends: altree (= 1.3.2-1)
Section: debug
Priority: optional
Description: debug symbols for altree
Build-Ids: 294ea5d4a55d4f6fb947add047a4a2646700e5fc
drwxr-xr-x root/root 0 2021-09-17 16:26 ./
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/lib/debug/.build-id/29/
-rw-r--r-- root/root 318440 2021-09-17 16:26 ./usr/lib/debug/.build-id/29/4ea5d4a55d4f6fb947add047a4a2646700e5fc.debug
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/share/
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-09-17 16:26 ./usr/share/doc/altree-dbgsym -> altree
altree_1.3.2-1_armhf.deb
------------------------
new Debian package, version 2.0.
size 333912 bytes: control archive=1736 bytes.
831 bytes, 16 lines control
2864 bytes, 35 lines md5sums
Package: altree
Version: 1.3.2-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 538
Depends: libblas3 | libblas.so.3, libc6 (>= 2.29), libgsl25 (>= 2.6), perl, perlapi-5.32.1, libmath-tamuanova-perl
Recommends: libopenblas0 | libatlas3-base | libmkl-rt | libblas.so.3
Suggests: altree-examples
Section: science
Priority: optional
Homepage: https://gitlab.inria.fr/NGS/ALTree
Description: program to perform phylogeny-based association and localization analysis
ALTree was designed to perform association detection and localization of
susceptibility sites using haplotype phylogenetic trees: first, it allows the
detection of an association between a candidate gene and a disease, and second,
it enables to make hypothesis about the susceptibility loci.
drwxr-xr-x root/root 0 2021-09-17 16:26 ./
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/bin/
-rwxr-xr-x root/root 55855 2021-09-17 16:26 ./usr/bin/altree
-rwxr-xr-x root/root 15365 2021-09-17 16:26 ./usr/bin/altree-add-S
-rwxr-xr-x root/root 22801 2021-09-17 16:26 ./usr/bin/altree-convert
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/lib/
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/
drwxr-xr-x root/root 0 2021-09-17 16:26 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/
-rw-r--r-- root/root 342 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/Base.pm
-rw-r--r-- root/root 3081 2021-09-17 14:32 ./usr/lib/arm-linux-gnueabihf/perl5/5.32/ALTree/CUtils.pm
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 16604
Build-Time: 192
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1314
Job: altree_1.3.2-1
Machine Architecture: armhf
Package: altree
Package-Time: 1557
Source-Version: 1.3.2-1
Space: 16604
Status: successful
Version: 1.3.2-1
--------------------------------------------------------------------------------
Finished at 2021-09-20T06:02:32Z
Build needed 00:25:57, 16604k disc space