altree →
1.3.1-4+b3 →
armhf → 2017-07-29 03:46:30
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| altree 1.3.1-4+b3 (armhf) Sat, 29 Jul 2017 03:19:36 +0000 |
+==============================================================================+
Package: altree
Version: 1.3.1-4+b3
Source Version: 1.3.1-4
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/buster-staging-armhf-sbuild-4a07e16a-d097-40b4-848c-e3ced1f82937' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.0 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [11.9 MB]
Fetched 22.0 MB in 25s (865 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'altree' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/altree/trunk/
Need to get 517 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main altree 1.3.1-4 (dsc) [2275 B]
Get:2 http://172.17.0.1/private buster-staging/main altree 1.3.1-4 (tar) [509 kB]
Get:3 http://172.17.0.1/private buster-staging/main altree 1.3.1-4 (diff) [5876 B]
Fetched 517 kB in 0s (1464 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/altree-a7TuXt/altree-1.3.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/altree-a7TuXt' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-gIMwlS/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-gIMwlS/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-gIMwlS/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (2814 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-gIMwlS/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 1 not upgraded.
Need to get 772 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 772 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14837 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: bash-completion, debhelper (>= 9), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libatlas-base-dev, libtest-deep-perl
Filtered Build-Depends: bash-completion, debhelper (>= 9), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libatlas-base-dev, libtest-deep-perl
dpkg-deb: building package 'sbuild-build-depends-altree-dummy' in '/<<BUILDDIR>>/resolver-gIMwlS/apt_archive/sbuild-build-depends-altree-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-altree-dummy sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Sources [591 B]
Get:5 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Packages [676 B]
Fetched 2600 B in 0s (3615 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-gIMwlS/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install altree build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdmainutils
debhelper dh-autoreconf dh-strip-nondeterminism fig2dev file
fontconfig-config fonts-dejavu-core fonts-lmodern gawk gettext gettext-base
gfortran gfortran-6 ghostscript groff-base intltool-debian latex-make
libarchive-zip-perl libatlas-base-dev libatlas-dev libatlas3-base
libavahi-client3 libavahi-common-data libavahi-common3 libblas-common
libblas-dev libblas3 libbsd0 libcairo2 libcroco3 libcups2 libcupsimage2
libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgfortran-6-dev libgfortran3 libglib2.0-0 libgraphite2-3 libgs9
libgs9-common libgsl-dev libgsl2 libgssapi-krb5-2 libharfbuzz-icu0
libharfbuzz0b libice6 libicu57 libijs-0.35 libjbig0 libjbig2dec0
libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3
libkrb5support0 liblcms2-2 libmagic-mgc libmagic1 libmath-tamuanova-perl
libnspr4 libnss3 libopenjp2-7 libpaper-utils libpaper1 libpipeline1
libpixman-1-0 libpoppler64 libpotrace0 libptexenc1 libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1
libtamuanova-0.2 libtest-deep-perl libtexlua52 libtexluajit2 libtiff5
libtimedate-perl libtool libx11-6 libx11-data libxau6 libxaw7 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4
libxrender1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf
poppler-data preview-latex-style python python-minimal python2.7
python2.7-minimal t1utils tex-common texlive-base texlive-binaries
texlive-fonts-recommended texlive-lang-french texlive-latex-base
texlive-latex-extra texlive-latex-recommended texlive-pictures transfig ucf
x11-common xdg-utils
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make xfig gawk-doc gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-6-doc libgfortran3-dbg libcoarrays-dev ghostscript-x
groff libblas-doc liblapack-doc liblapack-dev cups-common gsl-ref-psdoc
| gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user
liblcms2-utils libtool-doc gcj-jdk m4-doc less www-browser libmail-box-perl
poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho
fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai
fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc
binfmt-support perl-tk xpdf-reader | pdf-viewer python-pygments
libfile-which-perl libspreadsheet-parseexcel-perl texlive-pstricks dot2tex
prerex ruby-tcltk | libtcltk-ruby gvfs-bin
Recommended packages:
netpbm curl | wget | lynx-cur gsfonts inkscape libcupsfilters1
libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs
fonts-droid-fallback krb5-locales libltdl-dev xml-core libmail-sendmail-perl
lmodern ruby wish tex-gyre texlive-fonts-recommended-doc tipa
texlive-latex-base-doc texlive-latex-extra-doc texlive-plain-generic prosper
texlive-latex-recommended-doc ruby | ruby-interpreter texlive-pictures-doc
tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bash-completion bsdmainutils
debhelper dh-autoreconf dh-strip-nondeterminism fig2dev file
fontconfig-config fonts-dejavu-core fonts-lmodern gawk gettext gettext-base
gfortran gfortran-6 ghostscript groff-base intltool-debian latex-make
libarchive-zip-perl libatlas-base-dev libatlas-dev libatlas3-base
libavahi-client3 libavahi-common-data libavahi-common3 libblas-common
libblas-dev libblas3 libbsd0 libcairo2 libcroco3 libcups2 libcupsimage2
libexpat1 libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgfortran-6-dev libgfortran3 libglib2.0-0 libgraphite2-3 libgs9
libgs9-common libgsl-dev libgsl2 libgssapi-krb5-2 libharfbuzz-icu0
libharfbuzz0b libice6 libicu57 libijs-0.35 libjbig0 libjbig2dec0
libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3
libkrb5support0 liblcms2-2 libmagic-mgc libmagic1 libmath-tamuanova-perl
libnspr4 libnss3 libopenjp2-7 libpaper-utils libpaper1 libpipeline1
libpixman-1-0 libpoppler64 libpotrace0 libptexenc1 libpython-stdlib
libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6 libsynctex1
libtamuanova-0.2 libtest-deep-perl libtexlua52 libtexluajit2 libtiff5
libtimedate-perl libtool libx11-6 libx11-data libxau6 libxaw7 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6 libxpm4
libxrender1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf
poppler-data preview-latex-style python python-minimal python2.7
python2.7-minimal sbuild-build-depends-altree-dummy t1utils tex-common
texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french
texlive-latex-base texlive-latex-extra texlive-latex-recommended
texlive-pictures transfig ucf x11-common xdg-utils
0 upgraded, 132 newly installed, 0 to remove and 1 not upgraded.
Need to get 148 MB of archives.
After this operation, 466 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-gIMwlS/apt_archive ./ sbuild-build-depends-altree-dummy 0.invalid.0 [876 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-1 [95.7 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.12+nmu1 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf bash-completion all 1:2.1-4.3 [178 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf gawk armhf 1:4.1.4+dfsg-1 [508 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.4-3 [290 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.4-3 [683 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf poppler-data all 0.4.7-8 [1451 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.13-2 [389 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.13-2 [1178 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.13-2 [40.5 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.2-2 [66.3 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.13-2 [1827 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.13-2 [285 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.13-2 [20.0 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.13-2 [154 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf tex-common all 6.07 [566 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.30-1 [222 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.30-1 [105 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.30-1 [63.4 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-2+b1 [117 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libkrb5support0 armhf 1.15.1-2 [58.4 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libk5crypto3 armhf 1.15.1-2 [115 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf libkrb5-3 armhf 1.15.1-2 [265 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libgssapi-krb5-2 armhf 1.15.1-2 [132 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-6 [7427 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-3 [601 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-2 [736 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-2 [433 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 14 [15.9 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.038-1 [17.6 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.038-1 [11.1 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.52.3-1 [2576 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libcroco3 armhf 0.6.12-1 [132 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-2+b1 [1220 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.2.5 [961 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf x11-common all 1:7.7+19 [251 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libxpm4 armhf 1:3.5.12-1 [43.6 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf fig2dev armhf 1:3.2.6a-3 [605 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.12.3-0.2 [304 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf fonts-lmodern all 2.004.5-3 [4540 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libgfortran3 armhf 6.4.0-1+rpi1 [166 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libgfortran-6-dev armhf 6.4.0-1+rpi1 [199 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf gfortran-6 armhf 6.4.0-1+rpi1 [5420 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:6.3.0-4d1 [1358 B]
Get:67 http://172.17.0.1/private buster-staging/main armhf libavahi-common-data armhf 0.6.32-2 [118 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf libavahi-common3 armhf 0.6.32-2 [48.6 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libavahi-client3 armhf 0.6.32-2 [51.3 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libcups2 armhf 2.2.4-3 [278 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libcupsimage2 armhf 2.2.4-3 [123 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.8-0.2 [393 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.12.3-0.2 [349 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libijs-0.35 armhf 0.35-12 [16.0 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libjbig2dec0 armhf 0.13-4.1 [52.6 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libjpeg62-turbo armhf 1:1.5.1-2 [109 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf liblcms2-2 armhf 2.8-4 [118 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libopenjp2-7 armhf 2.1.2-1.1 [108 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.8-4 [219 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libgs9-common all 9.21~dfsg-1 [5164 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libgs9 armhf 9.21~dfsg-1 [1807 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf ghostscript armhf 9.21~dfsg-1 [97.0 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf transfig all 1:3.2.6a-3 [39.6 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf latex-make all 2.2.3-2 [775 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libblas-common armhf 3.7.1-1 [14.6 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libatlas3-base armhf 3.10.3-1+rpi1 [1920 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.7.1-1 [108 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.7.1-1 [118 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libatlas-dev armhf 3.10.3-1+rpi1 [65.9 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libatlas-base-dev armhf 3.10.3-1+rpi1 [2528 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.34.0-1 [451 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.14.10-1 [692 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.10-2 [71.8 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libgsl2 armhf 2.3+dfsg-1 [722 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libgsl-dev armhf 2.3+dfsg-1 [847 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.4.2-1 [640 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.4.2-1 [465 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libkpathsea6 armhf 2017.20170613.44572-3 [151 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf libtamuanova-0.2 armhf 0.2-4 [7260 B]
Get:105 http://172.17.0.1/private buster-staging/main armhf libmath-tamuanova-perl armhf 1.0.2-2+b4 [12.4 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libnspr4 armhf 2:4.15-1 [95.5 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libnss3 armhf 2:3.31-1 [944 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf libpoppler64 armhf 0.48.0-2 [1163 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libpotrace0 armhf 1.14-2 [23.1 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libptexenc1 armhf 2017.20170613.44572-3 [55.8 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libsynctex1 armhf 2017.20170613.44572-3 [58.4 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libtest-deep-perl all 1.126-1 [48.4 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libtexlua52 armhf 2017.20170613.44572-3 [85.7 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf libtexluajit2 armhf 2017.20170613.44572-3 [201 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libxmu6 armhf 2:1.1.2-2 [52.0 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libxaw7 armhf 2:1.0.13-1 [164 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf libxi6 armhf 2:1.7.9-1 [77.8 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf libzzip-0-13 armhf 0.13.62-3.1 [51.5 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf preview-latex-style all 11.90-2 [200 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf t1utils armhf 1.39-2 [52.7 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf texlive-binaries armhf 2017.20170613.44572-3 [5846 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.1-1 [71.1 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf texlive-base all 2017.20170629-1 [18.7 MB]
Get:127 http://172.17.0.1/private buster-staging/main armhf texlive-fonts-recommended all 2017.20170629-1 [5310 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf texlive-lang-french all 2017.20170629-1 [25.4 MB]
Get:129 http://172.17.0.1/private buster-staging/main armhf texlive-latex-base all 2017.20170629-1 [975 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf texlive-latex-recommended all 2017.20170629-1 [14.8 MB]
Get:131 http://172.17.0.1/private buster-staging/main armhf texlive-pictures all 2017.20170629-1 [3981 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf texlive-latex-extra all 2017.20170629-1 [10.3 MB]
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Setting up libcups2:armhf (2.2.4-3) ...
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update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
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/usr/bin/tl-paper: setting paper size for pdftex to a4.
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Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
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+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.28-6 dpkg-dev_1.18.24 g++-6_6.4.0-1+rpi1 gcc-6_6.4.0-1+rpi1 libc6-dev_2.24-12 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.5~beta1+b3 autoconf_2.69-10 automake_1:1.15.1-2 autopoint_0.19.8.1-2 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.43 bash_4.4-5 bash-completion_1:2.1-4.3 binutils_2.28-6 bsdmainutils_9.0.12+nmu1 bsdutils_1:2.29.2-2+rpi1 build-essential_12.3 bzip2_1.0.6-8.1 ca-certificates_20161130+nmu1 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:6.3.0-4d1 cpp-6_6.4.0-1+rpi1 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.2.5 debianutils_4.8.1.1 dh-autoreconf_14 dh-strip-nondeterminism_0.038-1 diffutils_1:3.5-3 dmsetup_2:1.02.137-2 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.4-2 e2fsprogs_1.43.4-2 fakeroot_1.21-3.1 fig2dev_1:3.2.6a-3 file_1:5.30-1 findutils_4.6.0+git+20170606-3 fontconfig-config_2.12.3-0.2 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-3 g++_4:6.3.0-4d1 g++-6_6.4.0-1+rpi1 gawk_1:4.1.4+dfsg-1 gcc_4:6.3.0-4d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-6_6.4.0-1+rpi1 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libidn11_1.33-1 libidn2-0_2.0.2-1 libijs-0.35_0.35-12 libip4tc0_1.6.1-2 libisl15_0.18-1 libjbig0_2.1-3.1 libjbig2dec0_0.13-4.1 libjpeg62-turbo_1:1.5.1-2 libk5crypto3_1.15.1-2 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libkpathsea6_2017.20170613.44572-3 libkrb5-3_1.15.1-2 libkrb5support0_1.15.1-2 libksba8_1.3.5-2 liblcms2-2_2.8-4 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.30-1 libmagic1_1:5.30-1 libmath-tamuanova-perl_1.0.2-2+b4 libmount1_2.29.2-2+rpi1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20170715-2 libncursesw5_6.0+20170715-2 libnettle6_3.3-1 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libnspr4_2:4.15-1 libnss3_2:3.31-1 libopenjp2-7_2.1.2-1.1 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre3_2:8.39-3 libperl5.24_5.24.1-7 libperl5.26_5.26.0-4 libpipeline1_1.4.2-1 libpixman-1-0_0.34.0-1 libplymouth4_0.9.2-4 libpng16-16_1.6.30-2 libpoppler64_0.48.0-2 libpotrace0_1.14-2 libprocps6_2:3.3.12-3 libptexenc1_2017.20170613.44572-3 libpython-stdlib_2.7.13-2 libpython2.7-minimal_2.7.13-2 libpython2.7-stdlib_2.7.13-2 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-2 libsemanage1_2.6-2 libsepol1_2.6-2 libsigsegv2_2.11-1 libsm6_2:1.2.2-1+b1 libsmartcols1_2.29.2-2+rpi1 libsqlite3-0_3.19.3-3 libss2_1.43.4-2 libssl1.1_1.1.0f-3 libstdc++-6-dev_6.4.0-1+rpi1 libstdc++6_7.1.0-9+rpi1 libsynctex1_2017.20170613.44572-3 libsystemd0_233-10 libtamuanova-0.2_0.2-4 libtasn1-6_4.12-2 libtest-deep-perl_1.126-1 libtexlua52_2017.20170613.44572-3 libtexluajit2_2017.20170613.44572-3 libtiff5_4.0.8-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170715-2 libtool_2.4.6-2 libubsan0_7.1.0-9+rpi1 libudev1_233-10 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-2+rpi1 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 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sbuild-build-depends-core-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.9+nmu1 systemd_233-10 sysvinit-utils_2.88dsf-59.9 t1utils_1.39-2 tar_1.29b-2 tex-common_6.07 texlive-base_2017.20170629-1 texlive-binaries_2017.20170613.44572-3 texlive-fonts-recommended_2017.20170629-1 texlive-lang-french_2017.20170629-1 texlive-latex-base_2017.20170629-1 texlive-latex-extra_2017.20170629-1 texlive-latex-recommended_2017.20170629-1 texlive-pictures_2017.20170629-1 transfig_1:3.2.6a-3 tzdata_2017b-2 ucf_3.0036 udev_233-10 util-linux_2.29.2-2+rpi1 x11-common_1:7.7+19 xdg-utils_1.1.1-1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
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| Build |
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Unpack source
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec 9 22:25:33 2015 UTC
gpgv: using RSA key 9647DE637EC7B751
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./altree_1.3.1-4.dsc
dpkg-source: info: extracting altree in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking altree_1.3.1.orig.tar.gz
dpkg-source: info: unpacking altree_1.3.1-4.debian.tar.xz
dpkg-source: info: applying from-upstream-no-nested-functions.patch
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Hack binNMU version
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Created changelog entry for binNMU version 1.3.1-4+b3
User Environment
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APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-4a07e16a-d097-40b4-848c-e3ced1f82937
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
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dpkg-buildpackage: info: source package altree
dpkg-buildpackage: info: source version 1.3.1-4+b3
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build altree-1.3.1
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean
dh_testdir
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
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perl -I. Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Checking if your kit is complete...
Looks good
MakeMaker (v7.24)
Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib'
Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib'
Generating a Unix-style Makefile
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Generating a Unix-style Makefile
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Generating a Unix-style Makefile
Writing Makefile for altree
Writing MYMETA.yml and MYMETA.json
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
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make[3]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
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======> building manual.pdf <======
Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}'
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Chapter 1.
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[]\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10.
Chapter 2.
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[]\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-
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Chapter 3.
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Chapter 4.
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Chapter 5.
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Chapter 6.
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Chapter 7.
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Chapter 1.
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Chapter 2.
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Chapter 1.
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Chapter 1.
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make[4]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
dh_auto_build
make -j1
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cp ALTree/Base.pm blib/lib/ALTree/Base.pm
cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm
cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm
cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm
cp ALTree/Import.pm blib/lib/ALTree/Import.pm
cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm
cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm
cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm
cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm
cp ALTree/Site.pm blib/lib/ALTree/Site.pm
cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm
cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm
cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm
cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm
cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm
cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm
cp ALTree/Input.pm blib/lib/ALTree/Input.pm
cp ALTree/Node.pm blib/lib/ALTree/Node.pm
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm
AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils)
make -C c_sources
make[4]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE" chisq.c
chisq.c: In function 'pochisq':
chisq.c:81:19: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
double a, y, s;
^
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE" double_permutation.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE" fisher.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE" mt19937ar.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE" myrand.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE" resampling.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE" rhyper.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE" stats.c
arm-linux-gnueabihf-gcc -c -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE" z.c
z.c:12:13: warning: 'sccsfid' defined but not used [-Wunused-variable]
static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85";
^~~~~~~
ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o
: libaltree-cutils.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[4]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
Running Mkbootstrap for CUtils ()
chmod 644 "CUtils.bs"
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
"/usr/bin/perl" "/usr/share/perl/5.26.0/ExtUtils/xsubpp" -typemap '/usr/share/perl/5.26/ExtUtils/typemap' CUtils.xs > CUtils.xsc
Please specify prototyping behavior for CUtils.xs (see perlxs manual)
mv CUtils.xsc CUtils.c
arm-linux-gnueabihf-gcc -c -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE" CUtils.c
In file included from CUtils.xs:5:0:
ppport.h:237:0: warning: "PERL_UNUSED_DECL" redefined
# define PERL_UNUSED_DECL
In file included from CUtils.xs:2:0:
/usr/lib/arm-linux-gnueabihf/perl/5.26/CORE/perl.h:323:0: note: this is the location of the previous definition
# define PERL_UNUSED_DECL __attribute__unused__
CUtils.xs: In function 'XS_ALTree__CUtils_RHyper':
CUtils.xs:69:16: warning: implicit declaration of function 'rhyper' [-Wimplicit-function-declaration]
RETVAL=rhyper(n1, n2, k);
^~~~~~
rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -shared -L/usr/local/lib -fstack-protector-strong CUtils.o -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a \
-lm -lpthread -lgsl -lcblas \
chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so
Manifying 1 pod document
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
cp progs/altree blib/script/altree
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree
cp progs/altree-add-S blib/script/altree-add-S
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S
cp progs/altree-convert blib/script/altree-convert
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert
Manifying 3 pod documents
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
make -j1 test TEST_VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
No tests defined for ALTree::CUtils extension.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t
t/ALTree-CUtils.t .......
1..1
ok 1 - use ALTree::CUtils;
ok
t/double_permutation.t ..
1..3
ok 1 - use ALTree::CUtils;
ok 2 - undef when bad args
ok 3 - double_permutation
ok
All tests successful.
Files=2, Tests=4, 1 wallclock secs ( 0.14 usr 0.05 sys + 0.86 cusr 0.11 csys = 1.16 CPU)
Result: PASS
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/ALTree.t ..
1..1
ok 1 - use ALTree::Import;
ok
All tests successful.
Files=1, Tests=1, 1 wallclock secs ( 0.15 usr 0.01 sys + 0.75 cusr 0.08 csys = 0.99 CPU)
Result: PASS
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch
create-stamp debian/debhelper-build-stamp
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
Manifying 3 pod documents
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/auto/ALTree/CUtils/CUtils.so
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/auto/ALTree/CUtils/autosplit.ix
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/Base.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/SiteSensPerForet.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/Foret.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/SiteSens.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/Import.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/Nanova.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/Tree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/SiteSensPerTree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/to_rewrite.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/Site.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/SiteCollection.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/SitePerTree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/SitePerForet.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/Chi2.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/Sens.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/Utils.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/Input.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/Node.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.26/ALTree/CUtils.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree-add-S.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree-convert.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree-add-S
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree-convert
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
dh_installdocs -a
dh_installchangelogs -a
dh_installman -a
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/arm-linux-gnueabihf/perl5/5.26/auto/ALTree/CUtils/CUtils.so was not linked against libcblas.so.3 (it uses none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.1-4+b3_armhf.deb'.
dpkg-deb: building package 'altree' in '../altree_1.3.1-4+b3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../altree_1.3.1-4+b3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build altree-1.3.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-07-29T03:42:47Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
altree_1.3.1-4+b3_armhf.changes:
--------------------------------
Format: 1.8
Date: Wed, 09 Dec 2015 22:37:46 +0100
Source: altree (1.3.1-4)
Binary: altree altree-examples
Binary-Only: yes
Architecture: armhf
Version: 1.3.1-4+b3
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
altree - program to perform phylogeny-based association and localization a
altree-examples - example files for ALTree
Changes:
altree (1.3.1-4+b3) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
abd4484b191685a8c1019c6fe90e65e2c12787b8 282416 altree-dbgsym_1.3.1-4+b3_armhf.deb
497f90bf8f8697e624310a7b691b9635959bfeb8 333782 altree_1.3.1-4+b3_armhf.deb
14ff84ab7c781a222970cf2bd592cd491ecb38b0 8079 altree_1.3.1-4_armhf.buildinfo
Checksums-Sha256:
eea06609c86d5c5c3d3ea8c8f1228099f7d2eac613dc5ab71c7357d4552c886f 282416 altree-dbgsym_1.3.1-4+b3_armhf.deb
eaa82054d9236338daed5a167de4877723d92c194ca6fa45cd15709c1fb288c6 333782 altree_1.3.1-4+b3_armhf.deb
d0c37def2b8db07e52e7d9c7ca710a201968e45c68bdae0c98a6bef2ef87d013 8079 altree_1.3.1-4_armhf.buildinfo
Files:
e6746c35d5f8242365db2e0d9d268300 282416 debug extra altree-dbgsym_1.3.1-4+b3_armhf.deb
80923181000f742b85681ce6783e44c0 333782 science optional altree_1.3.1-4+b3_armhf.deb
2d8d082a921da3eb9f8dab1e20dc1a96 8079 science optional altree_1.3.1-4_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
altree-dbgsym_1.3.1-4+b3_armhf.deb
----------------------------------
new debian package, version 2.0.
size 282416 bytes: control archive=495 bytes.
432 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: altree-dbgsym
Source: altree (1.3.1-4)
Version: 1.3.1-4+b3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 293
Depends: altree (= 1.3.1-4+b3)
Section: debug
Priority: extra
Homepage: http://claire.bardel.free.fr/software.html
Description: Debug symbols for altree
Build-Ids: ceeeeb636d8cb6420f1fdc47151c249ae822b255
drwxr-xr-x root/root 0 2015-12-09 21:37 ./
drwxr-xr-x root/root 0 2015-12-09 21:37 ./usr/
drwxr-xr-x root/root 0 2015-12-09 21:37 ./usr/lib/
drwxr-xr-x root/root 0 2015-12-09 21:37 ./usr/lib/debug/
drwxr-xr-x root/root 0 2015-12-09 21:37 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2015-12-09 21:37 ./usr/lib/debug/.build-id/ce/
-rw-r--r-- root/root 289284 2015-12-09 21:37 ./usr/lib/debug/.build-id/ce/eeeb636d8cb6420f1fdc47151c249ae822b255.debug
drwxr-xr-x root/root 0 2015-12-09 21:37 ./usr/share/
drwxr-xr-x root/root 0 2015-12-09 21:37 ./usr/share/doc/
lrwxrwxrwx root/root 0 2015-12-09 21:37 ./usr/share/doc/altree-dbgsym -> altree
altree_1.3.1-4+b3_armhf.deb
---------------------------
new debian package, version 2.0.
size 333782 bytes: control archive=1698 bytes.
792 bytes, 16 lines control
2871 bytes, 35 lines md5sums
Package: altree
Source: altree (1.3.1-4)
Version: 1.3.1-4+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 536
Depends: libatlas3-base, libc6 (>= 2.4), libgsl2, perl (>= 5.26.0-4), perlapi-5.26.0, libmath-tamuanova-perl
Suggests: altree-examples
Section: science
Priority: optional
Homepage: http://claire.bardel.free.fr/software.html
Description: program to perform phylogeny-based association and localization analysis
ALTree was designed to perform association detection and localization of
susceptibility sites using haplotype phylogenetic trees: first, it allows the
detection of an association between a candidate gene and a disease, and second,
it enables to make hypothesis about the susceptibility loci.
drwxr-xr-x root/root 0 2015-12-09 21:37 ./
drwxr-xr-x root/root 0 2015-12-09 21:37 ./usr/
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 15980
Build-Time: 105
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 1235
Job: altree_1.3.1-4
Machine Architecture: armhf
Package: altree
Package-Time: 1391
Source-Version: 1.3.1-4
Space: 15980
Status: successful
Version: 1.3.1-4+b3
--------------------------------------------------------------------------------
Finished at 2017-07-29T03:42:47Z
Build needed 00:23:11, 15980k disc space