Raspbian Package Auto-Building

Build log for altree (1.3.1-4+b2) on armhf

altree1.3.1-4+b2armhf → 2016-10-02 09:02:52

sbuild (Debian sbuild) 0.70.0 (03 Aug 2016) on bm-wb-02

+==============================================================================+
| altree 1.3.1-4+b2 (armhf)                    Sun, 02 Oct 2016 08:42:12 +0000 |
+==============================================================================+

Package: altree
Version: 1.3.1-4+b2
Source Version: 1.3.1-4
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-faf63450-91ac-47f6-ad60-ea11d2e10951' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9318 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.3 MB]
Fetched 20.6 MB in 22s (923 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'altree' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/altree/trunk/
Need to get 517 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main altree 1.3.1-4 (dsc) [2275 B]
Get:2 http://172.17.0.1/private stretch-staging/main altree 1.3.1-4 (tar) [509 kB]
Get:3 http://172.17.0.1/private stretch-staging/main altree 1.3.1-4 (diff) [5876 B]
Fetched 517 kB in 0s (4730 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/altree-Bf2Frq/altree-1.3.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/altree-Bf2Frq' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-iiNDYN/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-iiNDYN/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-iiNDYN/gpg/trustdb.gpg: trustdb created
gpg: key 8120261D46CC9652: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 8120261D46CC9652: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 8120261D46CC9652: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-iiNDYN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-iiNDYN/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-iiNDYN/apt_archive ./ Release.gpg [342 B]
Get:4 copy:/<<BUILDDIR>>/resolver-iiNDYN/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-iiNDYN/apt_archive ./ Packages [433 B]
Fetched 2081 B in 0s (3590 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dirmngr fuse2fs gnupg-l10n libffi6 libfuse2 libgnutls30 libhogweed4
  libldap-2.4-2 libnettle6 libp11-kit0 libsasl2-2 libsasl2-modules
  libsasl2-modules-db libssl1.0.2 libtasn1-6 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 766 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-iiNDYN/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [766 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 766 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14070 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: bash-completion, debhelper (>= 9), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libatlas-base-dev, libtest-deep-perl
Filtered Build-Depends: bash-completion, debhelper (>= 9), latex-make, ghostscript, texlive-lang-french, texlive-latex-extra, texlive-latex-recommended, texlive-fonts-recommended, libmath-tamuanova-perl, libgsl-dev, libatlas-base-dev, libtest-deep-perl
dpkg-deb: building package 'sbuild-build-depends-altree-dummy' in '/<<BUILDDIR>>/resolver-EhIy1y/apt_archive/sbuild-build-depends-altree-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-altree-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-EhIy1y/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-EhIy1y/gpg/trustdb.gpg: trustdb created
gpg: key 8120261D46CC9652: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 8120261D46CC9652: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 8120261D46CC9652: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-EhIy1y/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-EhIy1y/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-EhIy1y/apt_archive ./ Release.gpg [342 B]
Get:4 copy:/<<BUILDDIR>>/resolver-EhIy1y/apt_archive ./ Sources [447 B]
Get:5 copy:/<<BUILDDIR>>/resolver-EhIy1y/apt_archive ./ Packages [536 B]
Fetched 2282 B in 0s (3784 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install altree build dependencies (apt-based resolver)
------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  dirmngr fuse2fs gnupg-l10n libfuse2 libsasl2-modules manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bash-completion bsdmainutils
  debhelper dh-autoreconf dh-strip-nondeterminism fig2dev file
  fontconfig-config fonts-dejavu-core gawk gettext gettext-base gfortran
  gfortran-6 ghostscript groff-base intltool-debian latex-make
  libarchive-zip-perl libatlas-base-dev libatlas-dev libatlas3-base
  libavahi-client3 libavahi-common-data libavahi-common3 libblas-common
  libblas-dev libblas3 libbsd0 libcairo2 libcroco3 libcups2 libcupsfilters1
  libcupsimage2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1
  libfreetype6 libgfortran-6-dev libgfortran3 libglib2.0-0 libgraphite2-3
  libgs9 libgs9-common libgsl-dev libgsl2 libgssapi-krb5-2 libharfbuzz-icu0
  libharfbuzz0b libice6 libicu57 libijs-0.35 libjbig0 libjbig2dec0
  libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3
  libkrb5support0 liblcms2-2 libmagic-mgc libmagic1 libmath-tamuanova-perl
  libnspr4 libnss3 libopenjp2-7 libpaper-utils libpaper1 libpipeline1
  libpixman-1-0 libpng16-16 libpoppler61 libpotrace0 libptexenc1
  libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6
  libsynctex1 libtamuanova-0.2 libtest-deep-perl libtexlua52 libtexluajit2
  libtiff5 libtool libunistring0 libx11-6 libx11-data libxau6 libxaw7
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6
  libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf
  poppler-data preview-latex-style python python-minimal python2.7
  python2.7-minimal t1utils tex-common texlive-base texlive-binaries
  texlive-fonts-recommended texlive-lang-french texlive-latex-base
  texlive-latex-extra texlive-latex-recommended texlive-pictures transfig ucf
  x11-common xdg-utils
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation dh-make xfig gawk-doc gettext-doc libasprintf-dev libgettextpo-dev
  gfortran-doc gfortran-6-doc libgfortran3-dbg libcoarrays-dev ghostscript-x
  groff libblas-doc liblapack-doc liblapack-dev liblapack-doc-man cups-common
  gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html krb5-doc krb5-user
  liblcms2-utils libtool-doc gcj-jdk less www-browser libmail-box-perl
  poppler-utils fonts-japanese-mincho | fonts-ipafont-mincho
  fonts-japanese-gothic | fonts-ipafont-gothic fonts-arphic-ukai
  fonts-arphic-uming fonts-nanum python-doc python-tk python2.7-doc
  binfmt-support perl-tk xpdf-reader | pdf-viewer libfile-which-perl
  python-pygments libspreadsheet-parseexcel-perl texlive-pstricks
  libtcltk-ruby prerex dot2tex gvfs-bin
Recommended packages:
  netpbm curl | wget | lynx-cur gsfonts inkscape libglib2.0-data
  shared-mime-info xdg-user-dirs fonts-droid-fallback krb5-locales libltdl-dev
  xml-core libmail-sendmail-perl lmodern ruby wish tex-gyre
  texlive-fonts-recommended-doc tipa texlive-latex-base-doc
  texlive-latex-extra-doc prosper texlive-latex-recommended-doc
  texlive-pictures-doc tk ruby | ruby-interpreter libfile-mimeinfo-perl
  libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bash-completion bsdmainutils
  debhelper dh-autoreconf dh-strip-nondeterminism fig2dev file
  fontconfig-config fonts-dejavu-core gawk gettext gettext-base gfortran
  gfortran-6 ghostscript groff-base intltool-debian latex-make
  libarchive-zip-perl libatlas-base-dev libatlas-dev libatlas3-base
  libavahi-client3 libavahi-common-data libavahi-common3 libblas-common
  libblas-dev libblas3 libbsd0 libcairo2 libcroco3 libcups2 libcupsfilters1
  libcupsimage2 libexpat1 libfile-stripnondeterminism-perl libfontconfig1
  libfreetype6 libgfortran-6-dev libgfortran3 libglib2.0-0 libgraphite2-3
  libgs9 libgs9-common libgsl-dev libgsl2 libgssapi-krb5-2 libharfbuzz-icu0
  libharfbuzz0b libice6 libicu57 libijs-0.35 libjbig0 libjbig2dec0
  libjpeg62-turbo libk5crypto3 libkeyutils1 libkpathsea6 libkrb5-3
  libkrb5support0 liblcms2-2 libmagic-mgc libmagic1 libmath-tamuanova-perl
  libnspr4 libnss3 libopenjp2-7 libpaper-utils libpaper1 libpipeline1
  libpixman-1-0 libpng16-16 libpoppler61 libpotrace0 libptexenc1
  libpython-stdlib libpython2.7-minimal libpython2.7-stdlib libsigsegv2 libsm6
  libsynctex1 libtamuanova-0.2 libtest-deep-perl libtexlua52 libtexluajit2
  libtiff5 libtool libunistring0 libx11-6 libx11-data libxau6 libxaw7
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml2 libxmu6
  libxpm4 libxrender1 libxt6 libzzip-0-13 m4 man-db mime-support po-debconf
  poppler-data preview-latex-style python python-minimal python2.7
  python2.7-minimal sbuild-build-depends-altree-dummy t1utils tex-common
  texlive-base texlive-binaries texlive-fonts-recommended texlive-lang-french
  texlive-latex-base texlive-latex-extra texlive-latex-recommended
  texlive-pictures transfig ucf x11-common xdg-utils
0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded.
Need to get 158 MB of archives.
After this operation, 542 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-EhIy1y/apt_archive ./ sbuild-build-depends-altree-dummy 0.invalid.0 [870 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf bash-completion all 1:2.1-4.3 [178 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.12-3 [388 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.12-3 [1174 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-2 [40.3 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.12-3 [1843 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.12-3 [279 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-2 [19.8 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-2 [153 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf gawk armhf 1:4.1.3+dfsg-0.1 [509 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libpaper1 armhf 1.1.24+nmu4 [21.4 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libxdmcp6 armhf 1:1.1.2-1.1 [24.9 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libx11-data all 2:1.6.3-1 [128 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libzzip-0-13 armhf 0.13.62-3 [51.3 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf poppler-data all 0.4.7-7 [1466 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.28-4 [210 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-4 [104 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-4 [62.7 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.14.3+dfsg-2 [57.5 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.14.3+dfsg-2 [110 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.14.3+dfsg-2 [262 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.14.3+dfsg-2 [131 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-4 [7407 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2 [805 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.0-1 [2520 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10 [823 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf x11-common all 1:7.7+16 [251 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libpng16-16 armhf 1.6.25-1 [261 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf libxpm4 armhf 1:3.5.11-1+b1 [42.4 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf fig2dev armhf 1:3.2.6-3 [628 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf fontconfig-config all 2.11.0-6.7 [271 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.1.1-11+rpi1 [166 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libgfortran-6-dev armhf 6.1.1-11+rpi1 [200 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf gfortran-6 armhf 6.1.1-11+rpi1 [27.9 MB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:6.1.1-1 [1370 B]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libavahi-common-data armhf 0.6.32-1 [118 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libavahi-common3 armhf 0.6.32-1 [48.6 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libavahi-client3 armhf 0.6.32-1 [51.2 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libcups2 armhf 2.2.0-2 [271 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.5.0-1 [109 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libtiff5 armhf 4.0.6-2 [203 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libcupsfilters1 armhf 1.10.0-1 [117 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libcupsimage2 armhf 2.2.0-2 [119 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libfreetype6 armhf 2.6.3-3+b1 [385 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libfontconfig1 armhf 2.11.0-6.7 [313 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libijs-0.35 armhf 0.35-12 [16.0 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libjbig2dec0 armhf 0.13-3 [52.3 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf liblcms2-2 armhf 2.7-1 [116 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libopenjp2-7 armhf 2.1.1-1 [106 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libgs9-common all 9.19~dfsg-3 [3031 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libgs9 armhf 9.19~dfsg-3 [1736 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf ghostscript armhf 9.19~dfsg-3 [96.2 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf tex-common all 6.05 [564 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf transfig all 1:3.2.6-3 [39.0 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf latex-make all 2.2.2-1 [775 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.1-2 [13.9 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libatlas3-base armhf 3.10.3-1+rpi1 [1920 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.1-2 [112 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.1-2 [18.9 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libatlas-dev armhf 3.10.3-1+rpi1 [65.9 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libatlas-base-dev armhf 3.10.3-1+rpi1 [2528 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libpixman-1-0 armhf 0.34.0-1 [451 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf libxrender1 armhf 1:0.9.9-2 [28.9 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libcairo2 armhf 1.14.6-1+b1 [686 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf libgraphite2-3 armhf 1.3.8-1 [62.5 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libgsl2 armhf 2.2.1+dfsg-1 [717 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf libgsl-dev armhf 2.2.1+dfsg-1 [843 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf libharfbuzz0b armhf 1.2.7-1+b1 [589 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf libharfbuzz-icu0 armhf 1.2.7-1+b1 [438 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf libice6 armhf 2:1.0.9-1+b1 [51.9 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf libkpathsea6 armhf 2016.20160513.41080-6 [149 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf libtamuanova-0.2 armhf 0.2-4 [7260 B]
Get:107 http://172.17.0.1/private stretch-staging/main armhf libmath-tamuanova-perl armhf 1.0.2-2+b3 [12.4 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf libnspr4 armhf 2:4.12-2 [94.1 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf libnss3 armhf 2:3.26-2 [945 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf libpoppler61 armhf 0.44.0-3 [1146 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf libpotrace0 armhf 1.13-2 [22.8 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf libptexenc1 armhf 2016.20160513.41080-6 [54.9 kB]
Get:114 http://172.17.0.1/private stretch-staging/main armhf libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf libsynctex1 armhf 2016.20160513.41080-6 [57.4 kB]
Get:116 http://172.17.0.1/private stretch-staging/main armhf libtest-deep-perl all 1.120-2 [45.0 kB]
Get:117 http://172.17.0.1/private stretch-staging/main armhf libtexlua52 armhf 2016.20160513.41080-6 [84.8 kB]
Get:118 http://172.17.0.1/private stretch-staging/main armhf libtexluajit2 armhf 2016.20160513.41080-6 [200 kB]
Get:119 http://172.17.0.1/private stretch-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:120 http://172.17.0.1/private stretch-staging/main armhf libxmu6 armhf 2:1.1.2-2 [52.0 kB]
Get:121 http://172.17.0.1/private stretch-staging/main armhf libxaw7 armhf 2:1.0.13-1 [164 kB]
Get:122 http://172.17.0.1/private stretch-staging/main armhf libxi6 armhf 2:1.7.6-1 [75.9 kB]
Get:123 http://172.17.0.1/private stretch-staging/main armhf preview-latex-style all 11.87-3+deb8u1 [318 kB]
Get:124 http://172.17.0.1/private stretch-staging/main armhf t1utils armhf 1.39-2 [52.7 kB]
Get:125 http://172.17.0.1/private stretch-staging/main armhf xdg-utils all 1.1.1-1 [71.1 kB]
Get:126 http://172.17.0.1/private stretch-staging/main armhf texlive-binaries armhf 2016.20160513.41080-6 [4992 kB]
Get:127 http://172.17.0.1/private stretch-staging/main armhf texlive-base all 2016.20160819-2 [15.6 MB]
Get:128 http://172.17.0.1/private stretch-staging/main armhf texlive-fonts-recommended all 2016.20160819-2 [5687 kB]
Get:129 http://172.17.0.1/private stretch-staging/main armhf texlive-lang-french all 2016.20160819-1 [25.2 MB]
Get:130 http://172.17.0.1/private stretch-staging/main armhf texlive-latex-base all 2016.20160819-2 [860 kB]
Get:131 http://172.17.0.1/private stretch-staging/main armhf texlive-latex-recommended all 2016.20160819-2 [13.2 MB]
Get:132 http://172.17.0.1/private stretch-staging/main armhf texlive-pictures all 2016.20160819-2 [3788 kB]
Get:133 http://172.17.0.1/private stretch-staging/main armhf texlive-latex-extra all 2016.20160819-1 [10.5 MB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 158 MB in 15s (10.4 MB/s)
Selecting previously unselected package groff-base.
(Reading database ... 14070 files and directories currently installed.)
Preparing to unpack .../00-groff-base_1.22.3-8_armhf.deb ...
Unpacking groff-base (1.22.3-8) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../01-libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../02-bsdmainutils_9.0.10_armhf.deb ...
Unpacking bsdmainutils (9.0.10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.7.5-1_armhf.deb ...
Unpacking man-db (2.7.5-1) ...
Selecting previously unselected package bash-completion.
Preparing to unpack .../05-bash-completion_1%3a2.1-4.3_all.deb ...
Unpacking bash-completion (1:2.1-4.3) ...
Selecting previously unselected package libpython2.7-minimal:armhf.
Preparing to unpack .../06-libpython2.7-minimal_2.7.12-3_armhf.deb ...
Unpacking libpython2.7-minimal:armhf (2.7.12-3) ...
Selecting previously unselected package python2.7-minimal.
Preparing to unpack .../07-python2.7-minimal_2.7.12-3_armhf.deb ...
Unpacking python2.7-minimal (2.7.12-3) ...
Selecting previously unselected package python-minimal.
Preparing to unpack .../08-python-minimal_2.7.11-2_armhf.deb ...
Unpacking python-minimal (2.7.11-2) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../09-mime-support_3.60_all.deb ...
Unpacking mime-support (3.60) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../10-libexpat1_2.2.0-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.0-1) ...
Selecting previously unselected package libpython2.7-stdlib:armhf.
Preparing to unpack .../11-libpython2.7-stdlib_2.7.12-3_armhf.deb ...
Unpacking libpython2.7-stdlib:armhf (2.7.12-3) ...
Selecting previously unselected package python2.7.
Preparing to unpack .../12-python2.7_2.7.12-3_armhf.deb ...
Unpacking python2.7 (2.7.12-3) ...
Selecting previously unselected package libpython-stdlib:armhf.
Preparing to unpack .../13-libpython-stdlib_2.7.11-2_armhf.deb ...
Unpacking libpython-stdlib:armhf (2.7.11-2) ...
Setting up libpython2.7-minimal:armhf (2.7.12-3) ...
Setting up python2.7-minimal (2.7.12-3) ...
Setting up python-minimal (2.7.11-2) ...
Selecting previously unselected package python.
(Reading database ... 15984 files and directories currently installed.)
Preparing to unpack .../0-python_2.7.11-2_armhf.deb ...
Unpacking python (2.7.11-2) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../1-libsigsegv2_2.10-5_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-5) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Selecting previously unselected package gawk.
(Reading database ... 16053 files and directories currently installed.)
Preparing to unpack .../000-gawk_1%3a4.1.3+dfsg-0.1_armhf.deb ...
Unpacking gawk (1:4.1.3+dfsg-0.1) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../001-libjbig0_2.1-3.1_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1) ...
Selecting previously unselected package ucf.
Preparing to unpack .../002-ucf_3.0036_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0036) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../003-libpaper1_1.1.24+nmu4_armhf.deb ...
Unpacking libpaper1:armhf (1.1.24+nmu4) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../004-libxau6_1%3a1.0.8-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.8-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../005-libxdmcp6_1%3a1.1.2-1.1_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-1.1) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../006-libxcb1_1.12-1_armhf.deb ...
Unpacking libxcb1:armhf (1.12-1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../007-libx11-data_2%3a1.6.3-1_all.deb ...
Unpacking libx11-data (2:1.6.3-1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../008-libx11-6_2%3a1.6.3-1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.6.3-1) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../009-libxext6_2%3a1.3.3-1_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1) ...
Selecting previously unselected package libzzip-0-13:armhf.
Preparing to unpack .../010-libzzip-0-13_0.13.62-3_armhf.deb ...
Unpacking libzzip-0-13:armhf (0.13.62-3) ...
Selecting previously unselected package poppler-data.
Preparing to unpack .../011-poppler-data_0.4.7-7_all.deb ...
Unpacking poppler-data (0.4.7-7) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../012-libmagic-mgc_1%3a5.28-4_armhf.deb ...
Unpacking libmagic-mgc (1:5.28-4) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../013-libmagic1_1%3a5.28-4_armhf.deb ...
Unpacking libmagic1:armhf (1:5.28-4) ...
Selecting previously unselected package file.
Preparing to unpack .../014-file_1%3a5.28-4_armhf.deb ...
Unpacking file (1:5.28-4) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../015-gettext-base_0.19.8.1-1_armhf.deb ...
Unpacking gettext-base (0.19.8.1-1) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../016-libkeyutils1_1.5.9-9_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-9) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../017-libkrb5support0_1.14.3+dfsg-2_armhf.deb ...
Unpacking libkrb5support0:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../018-libk5crypto3_1.14.3+dfsg-2_armhf.deb ...
Unpacking libk5crypto3:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../019-libkrb5-3_1.14.3+dfsg-2_armhf.deb ...
Unpacking libkrb5-3:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../020-libgssapi-krb5-2_1.14.3+dfsg-2_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../021-libicu57_57.1-4_armhf.deb ...
Unpacking libicu57:armhf (57.1-4) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../022-libxml2_2.9.4+dfsg1-2_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../023-m4_1.4.17-5_armhf.deb ...
Unpacking m4 (1.4.17-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../024-autoconf_2.69-10_all.deb ...
Unpacking autoconf (2.69-10) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../025-autotools-dev_20160430.1_all.deb ...
Unpacking autotools-dev (20160430.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../026-automake_1%3a1.15-4_all.deb ...
Unpacking automake (1:1.15-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../027-autopoint_0.19.8.1-1_all.deb ...
Unpacking autopoint (0.19.8.1-1) ...
Selecting previously unselected package libtool.
Preparing to unpack .../028-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../029-dh-autoreconf_12_all.deb ...
Unpacking dh-autoreconf (12) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../030-libarchive-zip-perl_1.59-1_all.deb ...
Unpacking libarchive-zip-perl (1.59-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../031-libfile-stripnondeterminism-perl_0.028-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.028-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../032-dh-strip-nondeterminism_0.028-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.028-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../033-libglib2.0-0_2.50.0-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.50.0-1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../034-libcroco3_0.6.11-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-2) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../035-libunistring0_0.9.6+really0.9.3-0.1_armhf.deb ...
Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../036-gettext_0.19.8.1-1_armhf.deb ...
Unpacking gettext (0.19.8.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../037-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../038-po-debconf_1.0.19_all.deb ...
Unpacking po-debconf (1.0.19) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../039-debhelper_10_all.deb ...
Unpacking debhelper (10) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../040-x11-common_1%3a7.7+16_all.deb ...
Unpacking x11-common (1:7.7+16) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../041-libpng16-16_1.6.25-1_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.25-1) ...
Selecting previously unselected package libxpm4:armhf.
Preparing to unpack .../042-libxpm4_1%3a3.5.11-1+b1_armhf.deb ...
Unpacking libxpm4:armhf (1:3.5.11-1+b1) ...
Selecting previously unselected package fig2dev.
Preparing to unpack .../043-fig2dev_1%3a3.2.6-3_armhf.deb ...
Unpacking fig2dev (1:3.2.6-3) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../044-fonts-dejavu-core_2.37-1_all.deb ...
Unpacking fonts-dejavu-core (2.37-1) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../045-fontconfig-config_2.11.0-6.7_all.deb ...
Unpacking fontconfig-config (2.11.0-6.7) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../046-libgfortran3_6.1.1-11+rpi1_armhf.deb ...
Unpacking libgfortran3:armhf (6.1.1-11+rpi1) ...
Selecting previously unselected package libgfortran-6-dev:armhf.
Preparing to unpack .../047-libgfortran-6-dev_6.1.1-11+rpi1_armhf.deb ...
Unpacking libgfortran-6-dev:armhf (6.1.1-11+rpi1) ...
Selecting previously unselected package gfortran-6.
Preparing to unpack .../048-gfortran-6_6.1.1-11+rpi1_armhf.deb ...
Unpacking gfortran-6 (6.1.1-11+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../049-gfortran_4%3a6.1.1-1_armhf.deb ...
Unpacking gfortran (4:6.1.1-1) ...
Selecting previously unselected package libavahi-common-data:armhf.
Preparing to unpack .../050-libavahi-common-data_0.6.32-1_armhf.deb ...
Unpacking libavahi-common-data:armhf (0.6.32-1) ...
Selecting previously unselected package libavahi-common3:armhf.
Preparing to unpack .../051-libavahi-common3_0.6.32-1_armhf.deb ...
Unpacking libavahi-common3:armhf (0.6.32-1) ...
Selecting previously unselected package libavahi-client3:armhf.
Preparing to unpack .../052-libavahi-client3_0.6.32-1_armhf.deb ...
Unpacking libavahi-client3:armhf (0.6.32-1) ...
Selecting previously unselected package libcups2:armhf.
Preparing to unpack .../053-libcups2_2.2.0-2_armhf.deb ...
Unpacking libcups2:armhf (2.2.0-2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../054-libjpeg62-turbo_1%3a1.5.0-1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:1.5.0-1) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../055-libtiff5_4.0.6-2_armhf.deb ...
Unpacking libtiff5:armhf (4.0.6-2) ...
Selecting previously unselected package libcupsfilters1:armhf.
Preparing to unpack .../056-libcupsfilters1_1.10.0-1_armhf.deb ...
Unpacking libcupsfilters1:armhf (1.10.0-1) ...
Selecting previously unselected package libcupsimage2:armhf.
Preparing to unpack .../057-libcupsimage2_2.2.0-2_armhf.deb ...
Unpacking libcupsimage2:armhf (2.2.0-2) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../058-libfreetype6_2.6.3-3+b1_armhf.deb ...
Unpacking libfreetype6:armhf (2.6.3-3+b1) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../059-libfontconfig1_2.11.0-6.7_armhf.deb ...
Unpacking libfontconfig1:armhf (2.11.0-6.7) ...
Selecting previously unselected package libijs-0.35:armhf.
Preparing to unpack .../060-libijs-0.35_0.35-12_armhf.deb ...
Unpacking libijs-0.35:armhf (0.35-12) ...
Selecting previously unselected package libjbig2dec0:armhf.
Preparing to unpack .../061-libjbig2dec0_0.13-3_armhf.deb ...
Unpacking libjbig2dec0:armhf (0.13-3) ...
Selecting previously unselected package liblcms2-2:armhf.
Preparing to unpack .../062-liblcms2-2_2.7-1_armhf.deb ...
Unpacking liblcms2-2:armhf (2.7-1) ...
Selecting previously unselected package libopenjp2-7:armhf.
Preparing to unpack .../063-libopenjp2-7_2.1.1-1_armhf.deb ...
Unpacking libopenjp2-7:armhf (2.1.1-1) ...
Selecting previously unselected package libgs9-common.
Preparing to unpack .../064-libgs9-common_9.19~dfsg-3_all.deb ...
Unpacking libgs9-common (9.19~dfsg-3) ...
Selecting previously unselected package libgs9:armhf.
Preparing to unpack .../065-libgs9_9.19~dfsg-3_armhf.deb ...
Unpacking libgs9:armhf (9.19~dfsg-3) ...
Selecting previously unselected package ghostscript.
Preparing to unpack .../066-ghostscript_9.19~dfsg-3_armhf.deb ...
Unpacking ghostscript (9.19~dfsg-3) ...
Selecting previously unselected package tex-common.
Preparing to unpack .../067-tex-common_6.05_all.deb ...
Unpacking tex-common (6.05) ...
Selecting previously unselected package transfig.
Preparing to unpack .../068-transfig_1%3a3.2.6-3_all.deb ...
Unpacking transfig (1:3.2.6-3) ...
Selecting previously unselected package latex-make.
Preparing to unpack .../069-latex-make_2.2.2-1_all.deb ...
Unpacking latex-make (2.2.2-1) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../070-libblas-common_3.6.1-2_armhf.deb ...
Unpacking libblas-common (3.6.1-2) ...
Selecting previously unselected package libatlas3-base.
Preparing to unpack .../071-libatlas3-base_3.10.3-1+rpi1_armhf.deb ...
Unpacking libatlas3-base (3.10.3-1+rpi1) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../072-libblas3_3.6.1-2_armhf.deb ...
Unpacking libblas3 (3.6.1-2) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../073-libblas-dev_3.6.1-2_armhf.deb ...
Unpacking libblas-dev (3.6.1-2) ...
Selecting previously unselected package libatlas-dev.
Preparing to unpack .../074-libatlas-dev_3.10.3-1+rpi1_armhf.deb ...
Unpacking libatlas-dev (3.10.3-1+rpi1) ...
Selecting previously unselected package libatlas-base-dev.
Preparing to unpack .../075-libatlas-base-dev_3.10.3-1+rpi1_armhf.deb ...
Unpacking libatlas-base-dev (3.10.3-1+rpi1) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../076-libpixman-1-0_0.34.0-1_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.34.0-1) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../077-libxcb-render0_1.12-1_armhf.deb ...
Unpacking libxcb-render0:armhf (1.12-1) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../078-libxcb-shm0_1.12-1_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.12-1) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../079-libxrender1_1%3a0.9.9-2_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.9-2) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../080-libcairo2_1.14.6-1+b1_armhf.deb ...
Unpacking libcairo2:armhf (1.14.6-1+b1) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../081-libgraphite2-3_1.3.8-1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.8-1) ...
Selecting previously unselected package libgsl2:armhf.
Preparing to unpack .../082-libgsl2_2.2.1+dfsg-1_armhf.deb ...
Unpacking libgsl2:armhf (2.2.1+dfsg-1) ...
Selecting previously unselected package libgsl-dev.
Preparing to unpack .../083-libgsl-dev_2.2.1+dfsg-1_armhf.deb ...
Unpacking libgsl-dev (2.2.1+dfsg-1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../084-libharfbuzz0b_1.2.7-1+b1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (1.2.7-1+b1) ...
Selecting previously unselected package libharfbuzz-icu0:armhf.
Preparing to unpack .../085-libharfbuzz-icu0_1.2.7-1+b1_armhf.deb ...
Unpacking libharfbuzz-icu0:armhf (1.2.7-1+b1) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../086-libice6_2%3a1.0.9-1+b1_armhf.deb ...
Unpacking libice6:armhf (2:1.0.9-1+b1) ...
Selecting previously unselected package libkpathsea6:armhf.
Preparing to unpack .../087-libkpathsea6_2016.20160513.41080-6_armhf.deb ...
Unpacking libkpathsea6:armhf (2016.20160513.41080-6) ...
Selecting previously unselected package libtamuanova-0.2.
Preparing to unpack .../088-libtamuanova-0.2_0.2-4_armhf.deb ...
Unpacking libtamuanova-0.2 (0.2-4) ...
Selecting previously unselected package libmath-tamuanova-perl.
Preparing to unpack .../089-libmath-tamuanova-perl_1.0.2-2+b3_armhf.deb ...
Unpacking libmath-tamuanova-perl (1.0.2-2+b3) ...
Selecting previously unselected package libnspr4:armhf.
Preparing to unpack .../090-libnspr4_2%3a4.12-2_armhf.deb ...
Unpacking libnspr4:armhf (2:4.12-2) ...
Selecting previously unselected package libnss3:armhf.
Preparing to unpack .../091-libnss3_2%3a3.26-2_armhf.deb ...
Unpacking libnss3:armhf (2:3.26-2) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../092-libpaper-utils_1.1.24+nmu4_armhf.deb ...
Unpacking libpaper-utils (1.1.24+nmu4) ...
Selecting previously unselected package libpoppler61:armhf.
Preparing to unpack .../093-libpoppler61_0.44.0-3_armhf.deb ...
Unpacking libpoppler61:armhf (0.44.0-3) ...
Selecting previously unselected package libpotrace0.
Preparing to unpack .../094-libpotrace0_1.13-2_armhf.deb ...
Unpacking libpotrace0 (1.13-2) ...
Selecting previously unselected package libptexenc1:armhf.
Preparing to unpack .../095-libptexenc1_2016.20160513.41080-6_armhf.deb ...
Unpacking libptexenc1:armhf (2016.20160513.41080-6) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../096-libsm6_2%3a1.2.2-1+b1_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.2-1+b1) ...
Selecting previously unselected package libsynctex1:armhf.
Preparing to unpack .../097-libsynctex1_2016.20160513.41080-6_armhf.deb ...
Unpacking libsynctex1:armhf (2016.20160513.41080-6) ...
Selecting previously unselected package libtest-deep-perl.
Preparing to unpack .../098-libtest-deep-perl_1.120-2_all.deb ...
Unpacking libtest-deep-perl (1.120-2) ...
Selecting previously unselected package libtexlua52:armhf.
Preparing to unpack .../099-libtexlua52_2016.20160513.41080-6_armhf.deb ...
Unpacking libtexlua52:armhf (2016.20160513.41080-6) ...
Selecting previously unselected package libtexluajit2:armhf.
Preparing to unpack .../100-libtexluajit2_2016.20160513.41080-6_armhf.deb ...
Unpacking libtexluajit2:armhf (2016.20160513.41080-6) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../101-libxt6_1%3a1.1.5-1_armhf.deb ...
Unpacking libxt6:armhf (1:1.1.5-1) ...
Selecting previously unselected package libxmu6:armhf.
Preparing to unpack .../102-libxmu6_2%3a1.1.2-2_armhf.deb ...
Unpacking libxmu6:armhf (2:1.1.2-2) ...
Selecting previously unselected package libxaw7:armhf.
Preparing to unpack .../103-libxaw7_2%3a1.0.13-1_armhf.deb ...
Unpacking libxaw7:armhf (2:1.0.13-1) ...
Selecting previously unselected package libxi6:armhf.
Preparing to unpack .../104-libxi6_2%3a1.7.6-1_armhf.deb ...
Unpacking libxi6:armhf (2:1.7.6-1) ...
Selecting previously unselected package preview-latex-style.
Preparing to unpack .../105-preview-latex-style_11.87-3+deb8u1_all.deb ...
Unpacking preview-latex-style (11.87-3+deb8u1) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../106-t1utils_1.39-2_armhf.deb ...
Unpacking t1utils (1.39-2) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../107-xdg-utils_1.1.1-1_all.deb ...
Unpacking xdg-utils (1.1.1-1) ...
Selecting previously unselected package texlive-binaries.
Preparing to unpack .../108-texlive-binaries_2016.20160513.41080-6_armhf.deb ...
Unpacking texlive-binaries (2016.20160513.41080-6) ...
Selecting previously unselected package texlive-base.
Preparing to unpack .../109-texlive-base_2016.20160819-2_all.deb ...
Unpacking texlive-base (2016.20160819-2) ...
Selecting previously unselected package texlive-fonts-recommended.
Preparing to unpack .../110-texlive-fonts-recommended_2016.20160819-2_all.deb ...
Unpacking texlive-fonts-recommended (2016.20160819-2) ...
Selecting previously unselected package texlive-lang-french.
Preparing to unpack .../111-texlive-lang-french_2016.20160819-1_all.deb ...
Unpacking texlive-lang-french (2016.20160819-1) ...
Selecting previously unselected package texlive-latex-base.
Preparing to unpack .../112-texlive-latex-base_2016.20160819-2_all.deb ...
Unpacking texlive-latex-base (2016.20160819-2) ...
Selecting previously unselected package texlive-latex-recommended.
Preparing to unpack .../113-texlive-latex-recommended_2016.20160819-2_all.deb ...
Unpacking texlive-latex-recommended (2016.20160819-2) ...
Selecting previously unselected package texlive-pictures.
Preparing to unpack .../114-texlive-pictures_2016.20160819-2_all.deb ...
Unpacking texlive-pictures (2016.20160819-2) ...
Selecting previously unselected package texlive-latex-extra.
Preparing to unpack .../115-texlive-latex-extra_2016.20160819-1_all.deb ...
Unpacking texlive-latex-extra (2016.20160819-1) ...
Selecting previously unselected package sbuild-build-depends-altree-dummy.
Preparing to unpack .../116-sbuild-build-depends-altree-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-altree-dummy (0.invalid.0) ...
Setting up libgs9-common (9.19~dfsg-3) ...
Setting up libkpathsea6:armhf (2016.20160513.41080-6) ...
Setting up libtexlua52:armhf (2016.20160513.41080-6) ...
Setting up libtest-deep-perl (1.120-2) ...
Setting up libexpat1:armhf (2.2.0-1) ...
Setting up libsynctex1:armhf (2016.20160513.41080-6) ...
Setting up libopenjp2-7:armhf (2.1.1-1) ...
Setting up libptexenc1:armhf (2016.20160513.41080-6) ...
Setting up libjpeg62-turbo:armhf (1:1.5.0-1) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up mime-support (3.60) ...
Setting up libpng16-16:armhf (1.6.25-1) ...
Setting up liblcms2-2:armhf (2.7-1) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up poppler-data (0.4.7-7) ...
Setting up libblas-common (3.6.1-2) ...
Setting up bash-completion (1:2.1-4.3) ...
Setting up libgfortran3:armhf (6.1.1-11+rpi1) ...
Setting up groff-base (1.22.3-8) ...
Setting up libglib2.0-0:armhf (2.50.0-1) ...
No schema files found: doing nothing.
Setting up libgfortran-6-dev:armhf (6.1.1-11+rpi1) ...
Setting up libtiff5:armhf (4.0.6-2) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up libgsl2:armhf (2.2.1+dfsg-1) ...
Setting up m4 (1.4.17-5) ...
Setting up gawk (1:4.1.3+dfsg-0.1) ...
Setting up libicu57:armhf (57.1-4) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libnspr4:armhf (2:4.12-2) ...
Setting up ucf (3.0036) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2) ...
Setting up libfreetype6:armhf (2.6.3-3+b1) ...
Setting up libmagic-mgc (1:5.28-4) ...
Setting up libtamuanova-0.2 (0.2-4) ...
Setting up libmagic1:armhf (1:5.28-4) ...
Setting up libgraphite2-3:armhf (1.3.8-1) ...
Setting up libcroco3:armhf (0.6.11-2) ...
Setting up libjbig2dec0:armhf (0.13-3) ...
Setting up libpixman-1-0:armhf (0.34.0-1) ...
Setting up libblas3 (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Processing triggers for libc-bin (2.24-3) ...
Setting up autotools-dev (20160430.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up t1utils (1.39-2) ...
Processing triggers for systemd (231-4) ...
Setting up libijs-0.35:armhf (0.35-12) ...
Setting up libpotrace0 (1.13-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-1.1) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+16) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libzzip-0-13:armhf (0.13.62-3) ...
Setting up xdg-utils (1.1.1-1) ...
Setting up libtexluajit2:armhf (2016.20160513.41080-6) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libpython2.7-stdlib:armhf (2.7.12-3) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up autopoint (0.19.8.1-1) ...
Setting up libavahi-common-data:armhf (0.6.32-1) ...
Setting up libfile-stripnondeterminism-perl (0.028-1) ...
Setting up libpaper1:armhf (1.1.24+nmu4) ...

Creating config file /etc/papersize with new version
Setting up libatlas3-base (3.10.3-1+rpi1) ...
update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up gfortran-6 (6.1.1-11+rpi1) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up fontconfig-config (2.11.0-6.7) ...
Setting up libmath-tamuanova-perl (1.0.2-2+b3) ...
Setting up tex-common (6.05) ...
update-language: texlive-base not installed and configured, doing nothing!
Setting up gettext (0.19.8.1-1) ...
Setting up libgsl-dev (2.2.1+dfsg-1) ...
Setting up python2.7 (2.7.12-3) ...
Setting up libnss3:armhf (2:3.26-2) ...
Setting up libharfbuzz0b:armhf (1.2.7-1+b1) ...
Setting up preview-latex-style (11.87-3+deb8u1) ...
update-language: texlive-base not installed and configured, doing nothing!
Regenerating '/var/lib/texmf/fmtutil.cnf-DEBIAN'... done.
Regenerating '/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST'... done.
update-fmtutil has updated the following file(s):
	/var/lib/texmf/fmtutil.cnf-DEBIAN
	/var/lib/texmf/fmtutil.cnf-TEXLIVEDIST
If you want to activate the changes in the above file(s),
you should run fmtutil-sys or fmtutil.
Setting up autoconf (2.69-10) ...
Setting up file (1:5.28-4) ...
Setting up libkrb5support0:armhf (1.14.3+dfsg-2) ...
Setting up libpython-stdlib:armhf (2.7.11-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libice6:armhf (2:1.0.9-1+b1) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libavahi-common3:armhf (0.6.32-1) ...
Setting up libxcb1:armhf (1.12-1) ...
Setting up python (2.7.11-2) ...
Setting up libtool (2.4.6-2) ...
Setting up gfortran (4:6.1.1-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libfontconfig1:armhf (2.11.0-6.7) ...
Setting up libsm6:armhf (2:1.2.2-1+b1) ...
Setting up libk5crypto3:armhf (1.14.3+dfsg-2) ...
Setting up libxcb-render0:armhf (1.12-1) ...
Setting up libharfbuzz-icu0:armhf (1.2.7-1+b1) ...
Setting up po-debconf (1.0.19) ...
Setting up libblas-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up libxcb-shm0:armhf (1.12-1) ...
Setting up libxpm4:armhf (1:3.5.11-1+b1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.9-2) ...
Setting up libavahi-client3:armhf (0.6.32-1) ...
Setting up libatlas-dev (3.10.3-1+rpi1) ...
Setting up libkrb5-3:armhf (1.14.3+dfsg-2) ...
Setting up libpoppler61:armhf (0.44.0-3) ...
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up fig2dev (1:3.2.6-3) ...
Setting up libxmu6:armhf (2:1.1.2-2) ...
Setting up libgssapi-krb5-2:armhf (1.14.3+dfsg-2) ...
Setting up transfig (1:3.2.6-3) ...
Setting up libatlas-base-dev (3.10.3-1+rpi1) ...
update-alternatives: using /usr/lib/atlas-base/atlas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
update-alternatives: using /usr/lib/atlas-base/atlas/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libcups2:armhf (2.2.0-2) ...
Setting up libxi6:armhf (2:1.7.6-1) ...
Setting up libxaw7:armhf (2:1.0.13-1) ...
Setting up libcairo2:armhf (1.14.6-1+b1) ...
Setting up libcupsfilters1:armhf (1.10.0-1) ...
Setting up libcupsimage2:armhf (2.2.0-2) ...
Setting up libgs9:armhf (9.19~dfsg-3) ...
Setting up dh-autoreconf (12) ...
Setting up ghostscript (9.19~dfsg-3) ...
Setting up texlive-binaries (2016.20160513.41080-6) ...
update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up latex-make (2.2.2-1) ...
Setting up dh-strip-nondeterminism (0.028-1) ...
Setting up debhelper (10) ...
Processing triggers for tex-common (6.05) ...
update-language: texlive-base not installed and configured, doing nothing!
texlive-base is not ready, skipping fmtutil --all call
Setting up texlive-base (2016.20160819-2) ...
/usr/bin/tl-paper: setting paper size for dvips to a4.
/usr/bin/tl-paper: setting paper size for dvipdfmx to a4.
/usr/bin/tl-paper: setting paper size for xdvi to a4.
/usr/bin/tl-paper: setting paper size for pdftex to a4.
Processing triggers for tex-common (6.05) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Setting up texlive-latex-base (2016.20160819-2) ...
Setting up texlive-lang-french (2016.20160819-1) ...
Setting up texlive-fonts-recommended (2016.20160819-2) ...
Processing triggers for tex-common (6.05) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
	This may take some time... done.
Setting up texlive-latex-recommended (2016.20160819-2) ...
Setting up texlive-pictures (2016.20160819-2) ...
Processing triggers for tex-common (6.05) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up texlive-latex-extra (2016.20160819-1) ...
Processing triggers for tex-common (6.05) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Setting up sbuild-build-depends-altree-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-3) ...
Processing triggers for systemd (231-4) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.10 g++-6_6.1.1-11+rpi1 gcc-6_6.1.1-11+rpi1 libc6-dev_2.24-3 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.1.1-11+rpi1 libstdc++6_6.1.1-11+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: acl_2.2.52-3 adduser_3.115 apt_1.3 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.40 bash_4.4-1 bash-completion_1:2.1-4.3 binutils_2.26.1-1 bsdmainutils_9.0.10 bsdutils_1:2.28.2-1 build-essential_12.2 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:6.1.1-1 cpp-6_6.1.1-11+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dirmngr_2.1.15-3 dmsetup_2:1.02.133-1 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 fig2dev_1:3.2.6-3 file_1:5.28-4 findutils_4.6.0+git+20160703-2 fontconfig-config_2.11.0-6.7 fonts-dejavu-core_2.37-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.1.1-11+rpi1 gawk_1:4.1.3+dfsg-0.1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.1.1-11+rpi1 gcc-6-base_6.1.1-11+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:6.1.1-1 gfortran-6_6.1.1-11+rpi1 ghostscript_9.19~dfsg-3 gnupg_2.1.15-3 gnupg-agent_2.1.15-3 gnupg-l10n_2.1.15-3 gpgv_2.1.15-3 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 init_1.45 init-system-helpers_1.45 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 latex-make_2.2.2-1 libacl1_2.2.52-3 libapparmor1_2.10.95-4 libapt-pkg4.12_1.0.9.10 libapt-pkg5.0_1.3 libarchive-zip-perl_1.59-1 libasan1_4.9.3-14 libasan3_6.1.1-11+rpi1 libassuan0_2.4.3-1 libatlas-base-dev_3.10.3-1+rpi1 libatlas-dev_3.10.3-1+rpi1 libatlas3-base_3.10.3-1+rpi1 libatomic1_6.1.1-11+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.6-1 libaudit1_1:2.6.6-1 libavahi-client3_0.6.32-1 libavahi-common-data_0.6.32-1 libavahi-common3_0.6.32-1 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.28.2-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.24-3 libc-dev-bin_2.24-3 libc6_2.24-3 libc6-dev_2.24-3 libcairo2_1.14.6-1+b1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-11+rpi1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.0-2 libcups2_2.2.0-2 libcupsfilters1_1.10.0-1 libcupsimage2_2.2.0-2 libdb5.3_5.3.28-12 libdbus-1-3_1.10.10-1 libdebconfclient0_0.217 libdevmapper1.02.1_2:1.02.133-1 libdpkg-perl_1.18.10 libdrm2_2.4.70-1 libexpat1_2.2.0-1 libfakeroot_1.21-2 libfdisk1_2.28.2-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfontconfig1_2.11.0-6.7 libfreetype6_2.6.3-3+b1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-4.9-dev_4.9.3-14 libgcc-6-dev_6.1.1-11+rpi1 libgcc1_1:6.1.1-11+rpi1 libgcrypt20_1.7.3-1 libgdbm3_1.8.3-14 libgfortran-6-dev_6.1.1-11+rpi1 libgfortran3_6.1.1-11+rpi1 libglib2.0-0_2.50.0-1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.4-2 libgomp1_6.1.1-11+rpi1 libgpg-error0_1.24-1 libgraphite2-3_1.3.8-1 libgs9_9.19~dfsg-3 libgs9-common_9.19~dfsg-3 libgsl-dev_2.2.1+dfsg-1 libgsl2_2.2.1+dfsg-1 libgssapi-krb5-2_1.14.3+dfsg-2 libharfbuzz-icu0_1.2.7-1+b1 libharfbuzz0b_1.2.7-1+b1 libhogweed4_3.2-1 libice6_2:1.0.9-1+b1 libicu57_57.1-4 libidn11_1.33-1 libijs-0.35_0.35-12 libisl15_0.17.1-1 libjbig0_2.1-3.1 libjbig2dec0_0.13-3 libjpeg62-turbo_1:1.5.0-1 libk5crypto3_1.14.3+dfsg-2 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 libkpathsea6_2016.20160513.41080-6 libkrb5-3_1.14.3+dfsg-2 libkrb5support0_1.14.3+dfsg-2 libksba8_1.3.5-2 liblcms2-2_2.7-1 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b2 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic-mgc_1:5.28-4 libmagic1_1:5.28-4 libmath-tamuanova-perl_1.0.2-2+b3 libmount1_2.28.2-1 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnettle6_3.2-1 libnpth0_1.2-3 libnspr4_2:4.12-2 libnss3_2:3.26-2 libopenjp2-7_2.1.1-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc3-3 libpipeline1_1.4.1-2 libpixman-1-0_0.34.0-1 libpng12-0_1.2.54-6 libpng16-16_1.6.25-1 libpoppler61_0.44.0-3 libpotrace0_1.13-2 libprocps3_2:3.3.9-9 libprocps6_2:3.3.12-2 libptexenc1_2016.20160513.41080-6 libpython-stdlib_2.7.11-2 libpython2.7-minimal_2.7.12-3 libpython2.7-stdlib_2.7.12-3 libreadline6_6.3-8+b3 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libslang2_2.3.0-3+b1 libsm6_2:1.2.2-1+b1 libsmartcols1_2.28.2-1 libsqlite3-0_3.14.2-1 libss2_1.43.3-1 libssl1.0.2_1.0.2j-1 libstdc++-4.9-dev_4.9.3-14 libstdc++-6-dev_6.1.1-11+rpi1 libstdc++6_6.1.1-11+rpi1 libsynctex1_2016.20160513.41080-6 libsystemd0_231-4 libtamuanova-0.2_0.2-4 libtasn1-6_4.9-4 libtest-deep-perl_1.120-2 libtexlua52_2016.20160513.41080-6 libtexluajit2_2016.20160513.41080-6 libtiff5_4.0.6-2 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160917-1 libtool_2.4.6-2 libubsan0_6.1.1-11+rpi1 libudev1_231-4 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.2-1 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxaw7_2:1.0.13-1 libxcb-render0_1.12-1 libxcb-shm0_1.12-1 libxcb1_1.12-1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxi6_2:1.7.6-1 libxml2_2.9.4+dfsg1-2 libxmu6_2:1.1.2-2 libxpm4_1:3.5.11-1+b1 libxrender1_1:0.9.9-2 libxt6_1:1.1.5-1 libzzip-0-13_0.13.62-3 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.2 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.07-1 mawk_1.3.3-17 mime-support_3.60 mount_2.28.2-1 multiarch-support_2.24-3 nano_2.7.0-1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 passwd_1:4.2-3.2 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.24_5.24.1~rc3-3 pinentry-curses_0.9.7-5 po-debconf_1.0.19 poppler-data_0.4.7-7 preview-latex-style_11.87-3+deb8u1 procps_2:3.3.12-2 python_2.7.11-2 python-minimal_2.7.11-2 python2.7_2.7.12-3 python2.7-minimal_2.7.12-3 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-altree-dummy_0.invalid.0 sbuild-build-depends-core-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_231-4 systemd-sysv_231-4 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 t1utils_1.39-2 tar_1.29b-1 tex-common_6.05 texlive-base_2016.20160819-2 texlive-binaries_2016.20160513.41080-6 texlive-fonts-recommended_2016.20160819-2 texlive-lang-french_2016.20160819-1 texlive-latex-base_2016.20160819-2 texlive-latex-extra_2016.20160819-1 texlive-latex-recommended_2016.20160819-2 texlive-pictures_2016.20160819-2 transfig_1:3.2.6-3 tzdata_2016g-1 ucf_3.0036 udev_231-4 util-linux_2.28.2-1 x11-common_1:7.7+16 xdg-utils_1.1.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec  9 22:25:33 2015 UTC
gpgv:                using RSA key 9647DE637EC7B751
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./altree_1.3.1-4.dsc
dpkg-source: info: extracting altree in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking altree_1.3.1.orig.tar.gz
dpkg-source: info: unpacking altree_1.3.1-4.debian.tar.xz
dpkg-source: info: applying from-upstream-no-nested-functions.patch

Check disc space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 1.3.1-4+b2

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-faf63450-91ac-47f6-ad60-ea11d2e10951
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package altree
dpkg-buildpackage: info: source version 1.3.1-4+b2
dpkg-buildpackage: info: source distribution stretch-staging
 dpkg-source --before-build altree-1.3.1
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean
   dh_testdir
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C Documentation distclean
make[2]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[2]: Nothing to be done for 'distclean'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
dh_auto_clean
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules build-arch
dh build-arch
   dh_testdir -a
   dh_update_autotools_config -a
   dh_auto_configure -a
	perl -I. Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LD=arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro"
Checking if your kit is complete...
Looks good
MakeMaker (v7.1002)
Warning (non-fatal): Target 'dynamic' depends on targets in skipped section 'dynamic_lib'
Warning (non-fatal): Target 'static' depends on targets in skipped section 'static_lib'
Generating a Unix-style Makefile
Writing Makefile for ALTree::CUtils
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for ALTree::CUtils
Writing MYMETA.yml and MYMETA.json
Generating a Unix-style Makefile
Writing Makefile for altree
Writing MYMETA.yml and MYMETA.json
   debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make -C Documentation pdf
make[2]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE
make[3]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[3]: Nothing to be done for 'LU_WATCH_FILES_SAVE'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
         ======> building  manual.pdf <======
Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}'
Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported.
Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found.
Package texgraphicx Warning: 'texgraphicx' is now deprecated
(texgraphicx)                Please, consider switching to 'figlatex' package
(texgraphicx)                 on input line 47.
Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34.
Package texdepends Warning: Diverting empty macro 'Ginclude@eps' 
(texdepends)                Probably a bug in texdepends.sty.
Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87.
Chapter 1.
LaTeX Warning: Reference `fig:altree' on page 2 undefined on input line 121.
Package texdepends Warning: No 'fig/overview.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 124.
Package texdepends Warning: Figure 'fig/overview.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 124.
LaTeX Warning: Reference `fig:nesting_algo' on page 2 undefined on input line 143.
Package natbib Warning: Citation `Bardel05' on page 2 undefined on input line 143.
Package natbib Warning: Citation `Ge03' on page 2 undefined on input line 146.
Package natbib Warning: Citation `Becker04' on page 2 undefined on input line 146.
Package texdepends Warning: No 'fig/altree-q.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 150.
Package texdepends Warning: Figure 'fig/altree-q.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 150.
LaTeX Warning: `h' float specifier changed to `ht'.
Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180.
Package natbib Warning: Citation `Stephens01' on page 5 undefined on input line 197.
Package natbib Warning: Citation `Stephens03' on page 5 undefined on input line 197.
Package natbib Warning: Citation `Becker04' on page 5 undefined on input line 198.
Package natbib Warning: Citation `Swofford02' on page 5 undefined on input line 199.
Package natbib Warning: Citation `Felsenstein04' on page 5 undefined on input line 200.
Package natbib Warning: Citation `YangPAML' on page 5 undefined on input line 200.
Underfull \hbox (badness 1454) in paragraph at lines 196--201
[]\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10.
Chapter 2.
Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278.
Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281.
Underfull \hbox (badness 1142) in paragraph at lines 281--284
[]\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-
Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284.
Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288.
Underfull \hbox (badness 2486) in paragraph at lines 284--290
[]\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab
Underfull \hbox (badness 10000) in paragraph at lines 314--315

Chapter 3.
Underfull \hbox (badness 10000) in paragraph at lines 369--369
[]|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of
Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370
 [] 
Underfull \hbox (badness 10000) in paragraph at lines 396--397

Underfull \hbox (badness 10000) in paragraph at lines 400--401

Underfull \hbox (badness 10000) in paragraph at lines 416--417

Underfull \hbox (badness 1112) in paragraph at lines 505--507
[]\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes
Chapter 4.
Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553
 [] 
LaTeX Warning: Reference `help' on page 13 undefined on input line 564.
Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605
\T1/ptm/m/n/10.95 Examples: $[]$ $[]$ 
LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 632.
LaTeX Warning: Reference `description_etiquette' on page 14 undefined on input line 633.
Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634.
LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649.
LaTeX Warning: Reference `description_etiquette' on page 15 undefined on input line 649.
Chapter 5.
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --data-qual|-q
Underfull \hbox (badness 1281) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 remove the out-group se-quence for the
Underfull \hbox (badness 5681) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --tree-building-program|-p
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --s-site-characters
Underfull \hbox (badness 1565) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state
Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698
 [] 
LaTeX Warning: Reference `help' on page 16 undefined on input line 701.
Underfull \hbox (badness 10000) in paragraph at lines 735--738

Underfull \hbox (badness 1622) in paragraph at lines 747--755
\T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes
Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830.
Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830.
LaTeX Warning: Reference `fig:option_b' on page 19 undefined on input line 846.
LaTeX Warning: File `option_b.fig' not found on input line 852.
Package texdepends Warning: No 'fig/option_b_1.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 852.
Package texdepends Warning: Figure 'fig/option_b_1.fig' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 852.
LaTeX Warning: File `option_b.fig' not found on input line 853.
Package texdepends Warning: No 'fig/option_b_2.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 853.
Package texdepends Warning: Figure 'fig/option_b_2.fig' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 853.
Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921.
Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941.
Chapter 6.
Underfull \hbox (badness 5519) in paragraph at lines 968--971
[]\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in-
Package texdepends Warning: No 'fig/create_file_paup.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 1009.
Package texdepends Warning: Figure 'fig/create_file_paup.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 1009.
Underfull \hbox (badness 10000) in paragraph at lines 1024--1026
[]\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put 
Package texdepends Warning: No 'fig/create_file_phy.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 1043.
Package texdepends Warning: Figure 'fig/create_file_phy.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 1043.
Package texdepends Warning: No 'fig/association_paup.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 1104.
Package texdepends Warning: Figure 'fig/association_paup.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 1104.
Underfull \hbox (badness 10000) in paragraph at lines 1125--1127
[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run 
Package texdepends Warning: No 'fig/localisation_paup.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 1130.
Package texdepends Warning: Figure 'fig/localisation_paup.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 1130.
Package texdepends Warning: No 'fig/association_phylip.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 1168.
Package texdepends Warning: Figure 'fig/association_phylip.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 1168.
Package natbib Warning: Citation `Guindon03' on page 28 undefined on input line 1181.
Underfull \hbox (badness 2662) in paragraph at lines 1188--1195
\T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti
Package texdepends Warning: No 'fig/association_paml.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 1217.
Package texdepends Warning: Figure 'fig/association_paml.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 1217.
Underfull \hbox (badness 10000) in paragraph at lines 1247--1249
[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run 
Package texdepends Warning: No 'fig/localisation_paml.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 1252.
Package texdepends Warning: Figure 'fig/localisation_paml.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 1252.
Chapter 7.
Package texdepends Warning: Figure(s) missing. Check dependencies again.
Package natbib Warning: There were undefined citations.
Package rerunfilecheck Warning: File `manual.out' has changed.
(rerunfilecheck)                Rerun to get outlines right
(rerunfilecheck)                or use package `bookmark'.
LaTeX Warning: There were undefined references.
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE
make[3]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
LaTeX.mk:785: fig/option_b.subfig.mk: No such file or directory
         ======> building  fig/option_b.subfig.mk <======
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD
make[3]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
*** Checking rebuild with rule 'latex'
*** Checking rebuild with rule 'texdepends'
********************************************
*********** New build needed ***************
********************************************
New manual.aux file
LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...')
LU_rebuild_texdepends: new depends required
********************************************
/usr/bin/make LU_REC_LEVEL=2 manual.pdf
make[4]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
         ======> building  manual.bbl <======
This is BibTeX, Version 0.99d (TeX Live 2016/Debian)
The top-level auxiliary file: manual.aux
The style file: plainnat.bst
Database file #1: stage.bib
Warning--empty year in YangPAML
(There was 1 warning)
         ======> building  fig/overview.pdftex <======
         ======> building  fig/overview.pdftex_t <======
         ======> building  fig/altree-q.pdftex <======
         ======> building  fig/altree-q.pdftex_t <======
         ======> building  fig/option_b_1.fig <======
         ======> building  fig/option_b_2.fig <======
         ======> building  fig/create_file_paup.pdftex <======
         ======> building  fig/create_file_paup.pdftex_t <======
         ======> building  fig/create_file_phy.pdftex <======
         ======> building  fig/create_file_phy.pdftex_t <======
         ======> building  fig/association_paup.pdftex <======
         ======> building  fig/association_paup.pdftex_t <======
         ======> building  fig/localisation_paup.pdftex <======
         ======> building  fig/localisation_paup.pdftex_t <======
         ======> building  fig/association_phylip.pdftex <======
         ======> building  fig/association_phylip.pdftex_t <======
         ======> building  fig/association_paml.pdftex <======
         ======> building  fig/association_paml.pdftex_t <======
         ======> building  fig/localisation_paml.pdftex <======
         ======> building  fig/localisation_paml.pdftex_t <======
Previous compilation failed. Rerun needed
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE
make[5]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
         ======> building  manual.pdf <======
removed 'manual.pdf_NEED_REBUILD'
removed 'manual.pdf.mk'
Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}'
Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported.
Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found.
Package texgraphicx Warning: 'texgraphicx' is now deprecated
(texgraphicx)                Please, consider switching to 'figlatex' package
(texgraphicx)                 on input line 47.
Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34.
Package texdepends Warning: Diverting empty macro 'Ginclude@eps' 
(texdepends)                Probably a bug in texdepends.sty.
Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87.
Chapter 1.
Package natbib Warning: Citation `Bardel05' on page 3 undefined on input line 143.
Package natbib Warning: Citation `Ge03' on page 3 undefined on input line 146.
Package natbib Warning: Citation `Becker04' on page 3 undefined on input line 146.
LaTeX Warning: `h' float specifier changed to `ht'.
Package natbib Warning: Citation `Bardel05' on page 4 undefined on input line 180.
Package natbib Warning: Citation `Stephens01' on page 4 undefined on input line 197.
Package natbib Warning: Citation `Stephens03' on page 4 undefined on input line 197.
Package natbib Warning: Citation `Becker04' on page 4 undefined on input line 198.
Package natbib Warning: Citation `Swofford02' on page 4 undefined on input line 199.
Package natbib Warning: Citation `Felsenstein04' on page 4 undefined on input line 200.
Package natbib Warning: Citation `YangPAML' on page 4 undefined on input line 200.
Underfull \hbox (badness 1454) in paragraph at lines 196--201
[]\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10.
Chapter 2.
Package natbib Warning: Citation `Swofford02' on page 7 undefined on input line 278.
Package natbib Warning: Citation `Felsenstein04' on page 7 undefined on input line 281.
Underfull \hbox (badness 1142) in paragraph at lines 281--284
[]\T1/pcr/m/n/10.95 phylip \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-
Package natbib Warning: Citation `YangPAML' on page 7 undefined on input line 284.
Package natbib Warning: Citation `Guindon03' on page 7 undefined on input line 288.
Underfull \hbox (badness 2486) in paragraph at lines 284--290
[]\T1/pcr/m/n/10.95 paml \T1/ptm/b/n/10.95 ?\T1/ptm/m/n/10.95 : freely avail-ab
Underfull \hbox (badness 10000) in paragraph at lines 314--315

Chapter 3.
Underfull \hbox (badness 10000) in paragraph at lines 369--369
[]|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of
Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370
 [] 
Underfull \hbox (badness 10000) in paragraph at lines 396--397

Underfull \hbox (badness 10000) in paragraph at lines 400--401

Underfull \hbox (badness 10000) in paragraph at lines 416--417

Underfull \hbox (badness 1112) in paragraph at lines 505--507
[]\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes
Chapter 4.
Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553
 [] 
Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605
\T1/ptm/m/n/10.95 Examples: $[]$ $[]$ 
Package natbib Warning: Citation `Bardel05' on page 14 undefined on input line 634.
Chapter 5.
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --data-qual|-q
Underfull \hbox (badness 1281) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 remove the out-group se-quence for the
Underfull \hbox (badness 5681) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --tree-building-program|-p
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --s-site-characters
Underfull \hbox (badness 1565) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state
Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698
 [] 
Underfull \hbox (badness 10000) in paragraph at lines 735--738

Underfull \hbox (badness 1622) in paragraph at lines 747--755
\T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes
Package natbib Warning: Citation `Ge03' on page 19 undefined on input line 830.
Package natbib Warning: Citation `Becker04' on page 19 undefined on input line 830.
Package texdepends Warning: No 'fig/option_b_1.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 852.
Package texdepends Warning: Figure 'fig/option_b_1.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 852.
Package texdepends Warning: No 'fig/option_b_2.pdftex' file 
(texdepends)                using 1 for graphic dimensions on input line 853.
Package texdepends Warning: Figure 'fig/option_b_2.pdftex_t' needed
(texdepends)                Skipping it this time (the last one however)
(texdepends)                 on input line 853.
Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 921.
Package natbib Warning: Citation `Bardel05' on page 21 undefined on input line 941.
Chapter 6.
Underfull \hbox (badness 5519) in paragraph at lines 968--971
[]\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in-
Underfull \hbox (badness 10000) in paragraph at lines 1024--1026
[]\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put 
Underfull \hbox (badness 10000) in paragraph at lines 1125--1127
[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run 
Package natbib Warning: Citation `Guindon03' on page 26 undefined on input line 1181.
Underfull \hbox (badness 2662) in paragraph at lines 1188--1195
\T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti
Underfull \hbox (badness 10000) in paragraph at lines 1247--1249
[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run 
Chapter 7.
Underfull \hbox (badness 10000) in paragraph at lines 58--61
[]\T1/ptm/m/n/10.95 Z Yang.  Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho
Package texdepends Warning: Figure(s) missing. Check dependencies again.
Package natbib Warning: There were undefined citations.
Package natbib Warning: Citation(s) may have changed.
(natbib)                Rerun to get citations correct.
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE
make[5]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD
make[5]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
*** Checking rebuild with rule 'latex'
*** Checking rebuild with rule 'texdepends'
********************************************
*********** New build needed ***************
********************************************
New manual.aux file
LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...')
LU_rebuild_texdepends: new depends required
********************************************
/usr/bin/make LU_REC_LEVEL=3 manual.pdf
make[6]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
         ======> building  manual.bbl <======
This is BibTeX, Version 0.99d (TeX Live 2016/Debian)
The top-level auxiliary file: manual.aux
The style file: plainnat.bst
Database file #1: stage.bib
Warning--empty year in YangPAML
(There was 1 warning)
         ======> building  fig/option_b_1.pdftex <======
         ======> building  fig/option_b_1.pdftex_t <======
         ======> building  fig/option_b_2.pdftex <======
         ======> building  fig/option_b_2.pdftex_t <======
Previous compilation failed. Rerun needed
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE
make[7]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
         ======> building  manual.pdf <======
removed 'manual.pdf_NEED_REBUILD'
removed 'manual.pdf.mk'
Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}'
Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported.
Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found.
Package texgraphicx Warning: 'texgraphicx' is now deprecated
(texgraphicx)                Please, consider switching to 'figlatex' package
(texgraphicx)                 on input line 47.
Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34.
Package texdepends Warning: Diverting empty macro 'Ginclude@eps' 
(texdepends)                Probably a bug in texdepends.sty.
Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87.
Chapter 1.
LaTeX Warning: `h' float specifier changed to `ht'.
Underfull \hbox (badness 1454) in paragraph at lines 196--201
[]\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10.
Chapter 2.
Underfull \hbox (badness 10000) in paragraph at lines 314--315

Chapter 3.
Underfull \hbox (badness 10000) in paragraph at lines 369--369
[]|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of
Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370
 [] 
Underfull \hbox (badness 10000) in paragraph at lines 396--397

Underfull \hbox (badness 10000) in paragraph at lines 400--401

Underfull \hbox (badness 10000) in paragraph at lines 416--417

Underfull \hbox (badness 1112) in paragraph at lines 505--507
[]\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes
Chapter 4.
Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553
 [] 
Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605
\T1/ptm/m/n/10.95 Examples: $[]$ $[]$ 
Chapter 5.
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --data-qual|-q
Underfull \hbox (badness 1281) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 remove the out-group se-quence for the
Underfull \hbox (badness 5681) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --tree-building-program|-p
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --s-site-characters
Underfull \hbox (badness 1565) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state
Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698
 [] 
Underfull \hbox (badness 10000) in paragraph at lines 735--738

Underfull \hbox (badness 1622) in paragraph at lines 747--755
\T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes
Chapter 6.
Underfull \hbox (badness 5519) in paragraph at lines 968--971
[]\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in-
Underfull \hbox (badness 10000) in paragraph at lines 1024--1026
[]\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put 
Underfull \hbox (badness 10000) in paragraph at lines 1125--1127
[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run 
Underfull \hbox (badness 2662) in paragraph at lines 1188--1195
\T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti
Underfull \hbox (badness 10000) in paragraph at lines 1247--1249
[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run 
Chapter 7.
Underfull \hbox (badness 10000) in paragraph at lines 58--61
[]\T1/ptm/m/n/10.95 Z Yang.  Phy-lo-ge-netic anal-y-sis by max-i-mum like-li-ho
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE
make[7]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD
make[7]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
*** Checking rebuild with rule 'latex'
*** Checking rebuild with rule 'texdepends'
********************************************
*********** New build needed ***************
********************************************
New manual.aux file
LU_rebuild_latex: new run needed (LaTeX message 'Rerun to get...')
********************************************
/usr/bin/make LU_REC_LEVEL=4 manual.pdf
make[8]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
         ======> building  manual.bbl <======
This is BibTeX, Version 0.99d (TeX Live 2016/Debian)
The top-level auxiliary file: manual.aux
The style file: plainnat.bst
Database file #1: stage.bib
Warning--empty year in YangPAML
(There was 1 warning)
Previous compilation failed. Rerun needed
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_SAVE
make[9]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
         ======> building  manual.pdf <======
removed 'manual.pdf_NEED_REBUILD'
removed 'manual.pdf.mk'
Running: 'pdflatex' '--interaction' 'errorstopmode' '--jobname' 'manual' '\RequirePackage[extension=.pdf]{texdepends}\input{manual.tex}'
Package thumbpdf Warning: Compressed PDF objects of PDF 1.5 are not supported.
Package thumbpdf Warning: Thumbnail data file `manual.tpt' not found.
Package texgraphicx Warning: 'texgraphicx' is now deprecated
(texgraphicx)                Please, consider switching to 'figlatex' package
(texgraphicx)                 on input line 47.
Package texdepends Warning: graphicspath already redefined. Skipping it. on input line 34.
Package texdepends Warning: Diverting empty macro 'Ginclude@eps' 
(texdepends)                Probably a bug in texdepends.sty.
Package texdepends Warning: Gin@getbase already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Ginclude@pdf already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@eps already redefined. Skipping it. on input line 87.
Package texdepends Warning: Gread@pdf already redefined. Skipping it. on input line 87.
Chapter 1.
LaTeX Warning: `h' float specifier changed to `ht'.
Underfull \hbox (badness 1454) in paragraph at lines 196--201
[]\T1/ptm/m/n/10.95 Currently, \T1/pcr/m/n/10.95 ALTree-convert \T1/ptm/m/n/10.
Chapter 2.
Underfull \hbox (badness 10000) in paragraph at lines 314--315

Chapter 3.
Underfull \hbox (badness 10000) in paragraph at lines 369--369
[]|\T1/ptm/m/n/10.95 Output con-tain-ing the num-ber of
Overfull \hbox (2.0805pt too wide) in paragraph at lines 355--370
 [] 
Underfull \hbox (badness 10000) in paragraph at lines 396--397

Underfull \hbox (badness 10000) in paragraph at lines 400--401

Underfull \hbox (badness 10000) in paragraph at lines 416--417

Underfull \hbox (badness 1112) in paragraph at lines 505--507
[]\T1/ptm/m/n/10.95 Other ex-am-ples may be found in the test di-rec-tory. Thes
Chapter 4.
Overfull \hbox (2.0805pt too wide) in paragraph at lines 537--553
 [] 
Overfull \hbox (8.63097pt too wide) in paragraph at lines 584--605
\T1/ptm/m/n/10.95 Examples: $[]$ $[]$ 
Chapter 5.
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --data-qual|-q
Underfull \hbox (badness 1281) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 remove the out-group se-quence for the
Underfull \hbox (badness 5681) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 ancestral se-quence (only use-ful with
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --tree-building-program|-p
Underfull \hbox (badness 10000) in paragraph at lines 697--697
[]|\T1/pcr/m/n/10.95 --s-site-characters
Underfull \hbox (badness 1565) in paragraph at lines 697--697
[]|\T1/ptm/m/n/10.95 print the tree with the char-ac-ter state
Overfull \hbox (2.0805pt too wide) in paragraph at lines 664--698
 [] 
Underfull \hbox (badness 10000) in paragraph at lines 735--738

Underfull \hbox (badness 1622) in paragraph at lines 747--755
\T1/ptm/m/n/10.95 Example of such files are given in the test di-rec-tory. Thes
Chapter 6.
Underfull \hbox (badness 5519) in paragraph at lines 968--971
[]\T1/ptm/b/n/10.95 create_file \T1/ptm/m/n/10.95 which con-tains files and in-
Underfull \hbox (badness 10000) in paragraph at lines 1024--1026
[]\T1/ptm/m/n/10.95 the two \T1/pcr/m/n/10.95 FamHap \T1/ptm/m/n/10.95 out-put 
Underfull \hbox (badness 10000) in paragraph at lines 1125--1127
[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run 
Underfull \hbox (badness 2662) in paragraph at lines 1188--1195
\T1/ptm/m/n/10.95 The files nec-es-sary for the phy-lo-ge-netic re-con-struc-ti
Underfull \hbox (badness 10000) in paragraph at lines 1247--1249
[]\T1/ptm/m/n/10.95 a bash script con-tain-ing the three com-mand lines to run 
Chapter 7.
Underfull \hbox (badness 10000) in paragraph at lines 58--61
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" LU_WATCH_FILES_RESTORE
make[9]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
/usr/bin/make LU_REC_MASTER="manual" LU_REC_FLAVOR="PDF" LU_REC_TARGET="manual.pdf" manual.pdf_NEED_REBUILD
make[9]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
*** Checking rebuild with rule 'latex'
*** Checking rebuild with rule 'texdepends'
/usr/bin/make LU_REC_LEVEL=5 manual.pdf
make[10]: Entering directory '/<<PKGBUILDDIR>>/Documentation'
make[10]: 'manual.pdf' is up to date.
make[10]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[9]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[8]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[7]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[6]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[5]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[3]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/Documentation'
dh_auto_build
	make -j1
make[2]: Entering directory '/<<PKGBUILDDIR>>'
cp ALTree/Nanova.pm blib/lib/ALTree/Nanova.pm
cp ALTree/Input.pm blib/lib/ALTree/Input.pm
cp ALTree/SiteSensPerForet.pm blib/lib/ALTree/SiteSensPerForet.pm
cp ALTree/SiteSensPerTree.pm blib/lib/ALTree/SiteSensPerTree.pm
cp ALTree/SitePerTree.pm blib/lib/ALTree/SitePerTree.pm
cp ALTree/Site.pm blib/lib/ALTree/Site.pm
cp ALTree/SiteCollection.pm blib/lib/ALTree/SiteCollection.pm
cp ALTree/Chi2.pm blib/lib/ALTree/Chi2.pm
cp ALTree/Node.pm blib/lib/ALTree/Node.pm
cp ALTree/Sens.pm blib/lib/ALTree/Sens.pm
cp ALTree/SitePerForet.pm blib/lib/ALTree/SitePerForet.pm
cp ALTree/Tree.pm blib/lib/ALTree/Tree.pm
cp ALTree/to_rewrite.pm blib/lib/ALTree/to_rewrite.pm
cp ALTree/Foret.pm blib/lib/ALTree/Foret.pm
cp ALTree/Base.pm blib/lib/ALTree/Base.pm
cp ALTree/SiteSens.pm blib/lib/ALTree/SiteSens.pm
cp ALTree/Import.pm blib/lib/ALTree/Import.pm
cp ALTree/Utils.pm blib/lib/ALTree/Utils.pm
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
cp lib/ALTree/CUtils.pm ../blib/lib/ALTree/CUtils.pm
AutoSplitting ../blib/lib/ALTree/CUtils.pm (../blib/lib/auto/ALTree/CUtils)
make -C c_sources 
make[4]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
arm-linux-gnueabihf-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.24/CORE"   chisq.c
chisq.c: In function 'pochisq':
chisq.c:81:19: warning: 'y' may be used uninitialized in this function [-Wmaybe-uninitialized]
        double  a, y, s;
                   ^
arm-linux-gnueabihf-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.24/CORE"   double_permutation.c
arm-linux-gnueabihf-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.24/CORE"   fisher.c
arm-linux-gnueabihf-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.24/CORE"   mt19937ar.c
arm-linux-gnueabihf-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.24/CORE"   myrand.c
arm-linux-gnueabihf-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.24/CORE"   resampling.c
arm-linux-gnueabihf-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.24/CORE"   rhyper.c
arm-linux-gnueabihf-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.24/CORE"   stats.c
arm-linux-gnueabihf-gcc -c  -Wall -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"\" -DXS_VERSION=\"\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.24/CORE"   z.c
z.c:12:13: warning: 'sccsfid' defined but not used [-Wunused-variable]
 static char sccsfid[] = "@(#) z.c 5.1 (|stat) 12/26/85";
             ^~~~~~~
ar cr libaltree-cutils.a chisq.o double_permutation.o fisher.o mt19937ar.o myrand.o resampling.o rhyper.o stats.o z.o
: libaltree-cutils.a
make[4]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[4]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
Running Mkbootstrap for ALTree::CUtils ()
chmod 644 "CUtils.bs"
"/usr/bin/perl" "/usr/share/perl/5.24.1/ExtUtils/xsubpp"  -typemap "/usr/share/perl/5.24/ExtUtils/typemap"  CUtils.xs > CUtils.xsc && mv CUtils.xsc CUtils.c
Please specify prototyping behavior for CUtils.xs (see perlxs manual)
arm-linux-gnueabihf-gcc -c  -ggdb3 -I. -Ic_sources -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -fwrapv -fno-strict-aliasing -pipe -I/usr/local/include -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2   -DVERSION=\"1.1\" -DXS_VERSION=\"1.1\" -fPIC "-I/usr/lib/arm-linux-gnueabihf/perl/5.24/CORE"   CUtils.c
In file included from CUtils.xs:5:0:
ppport.h:237:0: warning: "PERL_UNUSED_DECL" redefined
 #  define PERL_UNUSED_DECL
 
In file included from CUtils.xs:2:0:
/usr/lib/arm-linux-gnueabihf/perl/5.24/CORE/perl.h:313:0: note: this is the location of the previous definition
 #    define PERL_UNUSED_DECL __attribute__unused__
 
CUtils.xs: In function 'XS_ALTree__CUtils_RHyper':
CUtils.xs:69:16: warning: implicit declaration of function 'rhyper' [-Wimplicit-function-declaration]
         RETVAL=rhyper(n1, n2, k);
                ^~~~~~
rm -f ../blib/arch/auto/ALTree/CUtils/CUtils.so
arm-linux-gnueabihf-gcc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro  -shared -L/usr/local/lib -fstack-protector-strong CUtils.o  -o ../blib/arch/auto/ALTree/CUtils/CUtils.so c_sources/libaltree-cutils.a	\
   -lm -lpthread -lgsl -lcblas  	\
  
chmod 755 ../blib/arch/auto/ALTree/CUtils/CUtils.so
"/usr/bin/perl" -MExtUtils::Command::MM -e 'cp_nonempty' -- CUtils.bs ../blib/arch/auto/ALTree/CUtils/CUtils.bs 644
Manifying 1 pod document
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
cp progs/altree-add-S blib/script/altree-add-S
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-add-S
cp progs/altree blib/script/altree
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree
cp progs/altree-convert blib/script/altree-convert
"/usr/bin/perl" -MExtUtils::MY -e 'MY->fixin(shift)' -- blib/script/altree-convert
Manifying 3 pod documents
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_test -a
	make -j1 test TEST_VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
Running Mkbootstrap for ALTree::CUtils ()
chmod 644 "CUtils.bs"
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
PERL_DL_NONLAZY=1 PERL_USE_UNSAFE_INC=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t
t/ALTree.t .. 
1..1
ok 1 - use ALTree::Import;
ok
All tests successful.
Files=1, Tests=1,  1 wallclock secs ( 0.13 usr  0.02 sys +  0.56 cusr  0.04 csys =  0.75 CPU)
Result: PASS
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
PERL_DL_NONLAZY=1 PERL_USE_UNSAFE_INC=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, '../blib/lib', '../blib/arch')" t/*.t
t/ALTree-CUtils.t ....... 
1..1
ok 1 - use ALTree::CUtils;
ok
t/double_permutation.t .. 
1..3
ok 1 - use ALTree::CUtils;
ok 2 - undef when bad args
ok 3 - double_permutation
ok
All tests successful.
Files=2, Tests=4,  1 wallclock secs ( 0.15 usr  0.01 sys +  0.50 cusr  0.11 csys =  0.77 CPU)
Result: PASS
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
No tests defined for ALTree::CUtils extension.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 fakeroot debian/rules binary-arch
dh binary-arch
   dh_testroot -a
   dh_prep -a
   dh_auto_install -a
	make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no PREFIX=/usr
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Entering directory '/<<PKGBUILDDIR>>/CUtils'
make[3]: Entering directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
make[3]: Nothing to be done for 'all'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/CUtils/c_sources'
Manifying 1 pod document
make[2]: Leaving directory '/<<PKGBUILDDIR>>/CUtils'
Manifying 3 pod documents
Files found in blib/arch: installing files in blib/lib into architecture dependent library tree
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/auto/ALTree/CUtils/CUtils.so
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/auto/ALTree/CUtils/autosplit.ix
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Nanova.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Input.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SiteSensPerForet.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SiteSensPerTree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SitePerTree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Site.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SiteCollection.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Chi2.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Node.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Sens.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SitePerForet.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Tree.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/to_rewrite.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Foret.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Base.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SiteSens.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Import.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Utils.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/CUtils.pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree-add-S.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man1/altree-convert.1p
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/share/man/man3/ALTree::CUtils.3pm
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree-add-S
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree
Installing /<<PKGBUILDDIR>>/debian/tmp/usr/bin/altree-convert
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   debian/rules override_dh_compress
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_compress --exclude=.pdf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_fixperms -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/altree/usr/lib/arm-linux-gnueabihf/perl5/5.24/auto/ALTree/CUtils/CUtils.so was not linked against libcblas.so.3 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'altree-dbgsym' in '../altree-dbgsym_1.3.1-4+b2_armhf.deb'.
dpkg-deb: building package 'altree' in '../altree_1.3.1-4+b2_armhf.deb'.
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../altree_1.3.1-4+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build altree-1.3.1
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2016-10-02T09:01:08Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


altree_1.3.1-4+b2_armhf.changes:
--------------------------------

Format: 1.8
Date: Wed, 09 Dec 2015 22:37:46 +0100
Source: altree (1.3.1-4)
Binary: altree altree-examples
Binary-Only: yes
Architecture: armhf
Version: 1.3.1-4+b2
Distribution: stretch-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
 altree     - program to perform phylogeny-based association and localization a
 altree-examples - example files for ALTree
Changes:
 altree (1.3.1-4+b2) stretch-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
Checksums-Sha1:
 f80b9dba06e96449303fd09b0e99764d2ee601d3 275248 altree-dbgsym_1.3.1-4+b2_armhf.deb
 bf231af3b68f488e90565030309fea76c85a849c 334136 altree_1.3.1-4+b2_armhf.deb
Checksums-Sha256:
 e1c335ceb670eb9d2b4acd2cb7f76b7fb9bc57a0df31db15aa8249d6faf8c4bc 275248 altree-dbgsym_1.3.1-4+b2_armhf.deb
 4c12ddce0333d7e347dcca14ff7d7c2e281eb8e0c582539b9549281eeb85df93 334136 altree_1.3.1-4+b2_armhf.deb
Files:
 24b3776beefcec9d11b4efa232a07a0d 275248 debug extra altree-dbgsym_1.3.1-4+b2_armhf.deb
 66e004b1606af6b72ed313509797920c 334136 science optional altree_1.3.1-4+b2_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


altree-dbgsym_1.3.1-4+b2_armhf.deb
----------------------------------

 new debian package, version 2.0.
 size 275248 bytes: control archive=496 bytes.
     432 bytes,    13 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: altree-dbgsym
 Source: altree (1.3.1-4)
 Version: 1.3.1-4+b2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 286
 Depends: altree (= 1.3.1-4+b2)
 Section: debug
 Priority: extra
 Homepage: http://claire.bardel.free.fr/software.html
 Description: Debug symbols for altree
 Auto-Built-Package: debug-symbols
 Build-Ids: 3dd3966fc72e5136134b7a7a715244d58a3dc1bf

drwxr-xr-x root/root         0 2015-12-09 21:37 ./
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/debug/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/debug/.build-id/3d/
-rw-r--r-- root/root    282268 2015-12-09 21:37 ./usr/lib/debug/.build-id/3d/d3966fc72e5136134b7a7a715244d58a3dc1bf.debug
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/share/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/share/doc/
lrwxrwxrwx root/root         0 2015-12-09 21:37 ./usr/share/doc/altree-dbgsym -> altree


altree_1.3.1-4+b2_armhf.deb
---------------------------

 new debian package, version 2.0.
 size 334136 bytes: control archive=1704 bytes.
     796 bytes,    16 lines      control              
    2871 bytes,    35 lines      md5sums              
 Package: altree
 Source: altree (1.3.1-4)
 Version: 1.3.1-4+b2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 536
 Depends: libatlas3-base, libc6 (>= 2.4), libgsl2, perl (>= 5.24.1~rc3-3), perlapi-5.24.1, libmath-tamuanova-perl
 Suggests: altree-examples
 Section: science
 Priority: optional
 Homepage: http://claire.bardel.free.fr/software.html
 Description: program to perform phylogeny-based association and localization analysis
  ALTree was designed to perform association detection and localization of
  susceptibility sites using haplotype phylogenetic trees: first, it allows the
  detection of an association between a candidate gene and a disease, and second,
  it enables to make hypothesis about the susceptibility loci.

drwxr-xr-x root/root         0 2015-12-09 21:37 ./
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/bin/
-rwxr-xr-x root/root     55855 2015-12-09 21:37 ./usr/bin/altree
-rwxr-xr-x root/root     15365 2015-12-09 21:37 ./usr/bin/altree-add-S
-rwxr-xr-x root/root     22801 2015-12-09 21:37 ./usr/bin/altree-convert
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/arm-linux-gnueabihf/perl5/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/
-rw-r--r-- root/root       342 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Base.pm
-rw-r--r-- root/root      3081 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/CUtils.pm
-rw-r--r-- root/root      2897 2013-06-30 21:45 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Chi2.pm
-rw-r--r-- root/root      2817 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Foret.pm
-rw-r--r-- root/root      2026 2013-06-30 21:45 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Import.pm
-rw-r--r-- root/root     24521 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Input.pm
-rw-r--r-- root/root      2371 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Nanova.pm
-rw-r--r-- root/root      5965 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Node.pm
-rw-r--r-- root/root      1455 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Sens.pm
-rw-r--r-- root/root      1895 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Site.pm
-rw-r--r-- root/root      1044 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SiteCollection.pm
-rw-r--r-- root/root      3592 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SitePerForet.pm
-rw-r--r-- root/root       876 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SitePerTree.pm
-rw-r--r-- root/root      1287 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SiteSens.pm
-rw-r--r-- root/root       905 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SiteSensPerForet.pm
-rw-r--r-- root/root      2781 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/SiteSensPerTree.pm
-rw-r--r-- root/root      4804 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Tree.pm
-rw-r--r-- root/root      1467 2012-10-28 20:50 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/Utils.pm
-rw-r--r-- root/root      9288 2012-11-03 13:24 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/ALTree/to_rewrite.pm
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/auto/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/auto/ALTree/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/auto/ALTree/CUtils/
-rw-r--r-- root/root     60964 2015-12-09 21:37 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/auto/ALTree/CUtils/CUtils.so
-rw-r--r-- root/root        95 2015-12-09 21:37 ./usr/lib/arm-linux-gnueabihf/perl5/5.24/auto/ALTree/CUtils/autosplit.ix
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/share/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/share/doc-base/
-rw-r--r-- root/root       517 2008-06-21 08:06 ./usr/share/doc-base/altree
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/share/doc/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/share/doc/altree/
-rw-r--r-- root/root      1441 2012-10-28 20:50 ./usr/share/doc/altree/README
-rw-r--r-- root/root       221 2015-12-09 21:37 ./usr/share/doc/altree/changelog.Debian.armhf.gz
-rw-r--r-- root/root      2661 2015-12-09 21:37 ./usr/share/doc/altree/changelog.Debian.gz
-rw-r--r-- root/root      2385 2012-11-03 14:11 ./usr/share/doc/altree/changelog.gz
-rw-r--r-- root/root      1363 2012-04-22 06:52 ./usr/share/doc/altree/copyright
-rw-r--r-- root/root    266831 2015-12-09 21:37 ./usr/share/doc/altree/manual.pdf
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/share/man/
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/share/man/man1/
-rw-r--r-- root/root      1962 2015-12-09 21:37 ./usr/share/man/man1/altree-add-S.1p.gz
-rw-r--r-- root/root      2027 2015-12-09 21:37 ./usr/share/man/man1/altree-convert.1p.gz
-rw-r--r-- root/root      3047 2015-12-09 21:37 ./usr/share/man/man1/altree.1p.gz
drwxr-xr-x root/root         0 2015-12-09 21:37 ./usr/share/man/man3/
-rw-r--r-- root/root      1801 2015-12-09 21:37 ./usr/share/man/man3/ALTree::CUtils.3pm.gz


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 15888
Build-Time: 102
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 991
Job: altree_1.3.1-4
Machine Architecture: armhf
Package: altree
Package-Time: 1136
Source-Version: 1.3.1-4
Space: 15888
Status: successful
Version: 1.3.1-4+b2
--------------------------------------------------------------------------------
Finished at 2016-10-02T09:01:08Z
Build needed 00:18:56, 15888k disc space