Bugs
In file included from mlgsl_matrix.h:9,
from mlgsl_matrix_double.h:11,
from mlgsl_wavelet.c:13:
wrappers.h:13:2: error: #error "Architectures with double-word alignment for doubles are not supported"
13 | #error "Architectures with double-word alignment for doubles are not supported"
| ^~~~~
arm-linux-gnueabihf-gcc src/mlgsl_cdf.o (exit 1)
(cd _build/default/src && /usr/bin/arm-linux-gnueabihf-gcc -O2 -fno-strict-aliasing -fwrapv -fPIC -D_FILE_OFFSET_BITS=64 -D_REENTRANT -O2 -fno-strict-aliasing -fwrapv -fPIC -fPIC -DPIC -Wno-unused-parameter -g -I /usr/lib/ocaml -o mlgsl_cdf.o -c mlgsl_cdf.c)
In file included from mlgsl_cdf.c:2:
wrappers.h:13:2: error: #error "Architectures with double-word alignment for doubles are not supported"
13 | #error "Architectures with double-word alignment for doubles are not supported"
| ^~~~~
make[1]: *** [debian/rules:11: override_dh_auto_build] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:8: binary-arch] Error 2
Tail of log for mrs on armhf:
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/mrs-6.0.5+dfsg'
./configure --prefix=/usr --config-dir=/etc/mrs/ \
--man-dir=/usr/share/man --mrs-user=mrs-dba \
--data-dir=/var/lib/mrs --log-dir=/var/log/mrs
length() used on @boost_version (did you mean "scalar(@boost_version)"?) at ./configure line 289.
Using perl /usr/bin/perl
Checking for a compiler... OK
Checking for libboost... OK
Checking for libzeep...libzeep is not installed, either install the package libzeep-dev
or download libzeep from ftp://ftp.cmbi.ru.nl/pub/software/libzeep
and run configure again.
make[1]: *** [debian/rules:15: override_dh_auto_configure] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/mrs-6.0.5+dfsg'
make: *** [debian/rules:12: binary-arch] Error 2
Tail of log for patat on armhf:
patat: -Mgrace=<n>
patat: The amount of allocation after the program receives a
patat: HeapOverflow exception before the exception is thrown again, if
patat: the program is still exceeding the heap limit.
patat:
patat: RTS options may also be specified using the GHCRTS environment variable.
patat:
patat: Other RTS options may be available for programs compiled a different way.
patat: The GHC User's Guide has full details.
patat:
make[2]: *** [Makefile:80: extra/patat.bash-completion] Error 1
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: *** [debian/rules:23: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:12: build-arch] Error 2
| ^~
In file included from /usr/include/openssl/bn.h:19,
from ../inst/include/s2/util/math/exactfloat/exactfloat.h:119,
from s2/util/math/exactfloat/exactfloat.cc:18:
/usr/include/openssl/ossl_typ.h:80:16: note: forward declaration of 'BIGNUM' {aka 'struct bignum_st'}
80 | typedef struct bignum_st BIGNUM;
| ^~~~~~~~~
make[1]: *** [/usr/lib/R/etc/Makeconf:179: s2/util/math/exactfloat/exactfloat.o] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
ERROR: compilation failed for package 's2'
* removing '/<<PKGBUILDDIR>>/debian/r-cran-s2/usr/lib/R/site-library/s2'
dh_auto_install: error: R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-s2/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 16 Jan 2021 17:30:37 +0100'" returned exit code 1
make: *** [debian/rules:4: binary-arch] Error 25
======================================================================
FAIL: test_salmonella (test.test_species.TestSpecies)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/test/test_species.py", line 113, in test_salmonella
self.assertTrue('Salmonella' in species)
AssertionError: False is not true
----------------------------------------------------------------------
Ran 190 tests in 1415.090s
FAILED (failures=19)
E: pybuild pybuild:353: test: plugin distutils failed with: exit code=1: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build; python3.9 -m unittest discover -v
dh_auto_test: error: pybuild --test -i python{version} -p 3.9 returned exit code 13
make: *** [debian/rules:6: binary-arch] Error 25
