Raspbian Package Auto-Building

Buildd status for chromium, polymake, openjdk-11, libsis-jhdf5-java, minimap2, monero, mpqc3, mrtrix3 (buster-staging)

Bugs

Package(s): Suite:
Compact mode Co-maintainers

Package armhf
Buildd exposure stats
✔ chromiumInstalled
✔ polymakeInstalled
✔ openjdk-11Installed
✔ libsis-jhdf5-javaBuild-Attempted
✔ minimap2Build-Attempted
✔ moneroMaybe-Failed
✔ mpqc3Build-Attempted
✔ mrtrix3Maybe-Failed

Tail of log for libsis-jhdf5-java on armhf:

[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.HDF5TimeDurationReaderTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.h5ar.DirectoryIndexUpdaterTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.h5ar.ArchivingStrategyTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.MatrixUtilsTest.xml
[Utils]   Directory test-output/junitreports exists: true
[Utils] Attempting to create test-output/junitreports/TEST-ch.systemsx.cisd.hdf5.HDF5RoundtripTest.xml
[Utils]   Directory test-output/junitreports exists: true
[TestNG] Time taken by org.testng.reporters.JUnitReportReporter@1d9bc04: 200 ms
make[1]: *** [debian/rules:53: override_dh_auto_test] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:16: build-arch] Error 2

Tail of log for minimap2 on armhf:

cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.15+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat  -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC  pe.c -o pe.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.15+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat  -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC  esterr.c -o esterr.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.15+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat  -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC  splitidx.c -o splitidx.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.15+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat  -msse2 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC  ksw2_ll_sse.c -o ksw2_ll_sse.o
cc -c -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/minimap2-2.15+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat  -msse4.1 -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_KALLOC -DKSW_CPU_DISPATCH  ksw2_extz2_sse.c -o ksw2_extz2_sse41.o
cc: error: unrecognized command line option '-msse2'
make[2]: *** [Makefile:51: ksw2_ll_sse.o] Error 1
make[2]: *** Waiting for unfinished jobs....
cc: error: unrecognized command line option '-msse4.1'
make[2]: *** [Makefile:55: ksw2_extz2_sse41.o] Error 1
make[2]: Leaving directory '/<<BUILDDIR>>/minimap2-2.15+dfsg'
dh_auto_build: make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make[1]: *** [debian/rules:13: override_dh_auto_build] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/minimap2-2.15+dfsg'
make: *** [debian/rules:6: build-arch] Error 2

Tail of log for monero on armhf:

/usr/include/c++/8/bits/atomic_base.h:396: undefined reference to `__atomic_load_8'
/usr/bin/ld: /usr/include/c++/8/bits/atomic_base.h:374: undefined reference to `__atomic_store_8'
/usr/bin/ld: /usr/include/c++/8/bits/atomic_base.h:396: undefined reference to `__atomic_load_8'
/usr/bin/ld: ../cryptonote_basic/libcryptonote_basic.a(miner.cpp.o): in function `cryptonote::miner::worker_thread()':
/usr/include/c++/8/bits/atomic_base.h:296: undefined reference to `__atomic_fetch_add_8'
/usr/bin/ld: /usr/include/c++/8/bits/atomic_base.h:396: undefined reference to `__atomic_load_8'
collect2: error: ld returned 1 exit status
make[3]: *** [src/blockchain_utilities/CMakeFiles/blockchain_import.dir/build.make:158: bin/monero-blockchain-import] Error 1
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: *** [CMakeFiles/Makefile2:3064: src/blockchain_utilities/CMakeFiles/blockchain_import.dir/all] Error 2
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[1]: *** [Makefile:144: all] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
dh_auto_build: cd obj-arm-linux-gnueabihf && make -j4 returned exit code 2
make: *** [debian/rules:10: binary-arch] Error 2

Tail of log for mpqc3 on armhf:

Source file was:

      #include <libpsio/psio.hpp>
      extern "C" char *gprgid() { return "test"; }
      int main(int argc, char** argv) {
        psi::PSIO psio;
        psio.purge(1);
        return 0;
      }
      
dh_auto_configure: cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DMPI_C_COMPILER=mpicc -DMPQC_NEW_FEATURES=1 -DBOOST=/usr .. returned exit code 1
make[1]: *** [debian/rules:21: override_dh_auto_configure] Error 2
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:18: build-arch] Error 2

Tail of log for mrtrix3 on armhf:

                 from ./core/app.h:27,
                 from ./core/command.h:24,
                 from cmd/mrtransform.cpp:16:
/usr/include/c++/8/bits/stl_vector.h: In function 'void run()':
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/stl_vector.h:1085:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<MR::Header*, std::vector<MR::Header, Eigen::aligned_allocator<MR::Header> > >' changed in GCC 7.1
    _M_realloc_insert(end(), __x);
    ^~~~~~~~~~~~~~~~~


make[1]: *** [debian/rules:39: override_dh_auto_build] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/mrtrix3-3.0~rc3+git135-g2b8e7d0c2'
make: *** [debian/rules:33: build-arch] Error 2