vcftools →
0.1.16-3+b2 →
armhf → 2024-01-19 18:40:18
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| vcftools 0.1.16-3+b2 (armhf) Fri, 19 Jan 2024 18:38:34 +0000 |
+==============================================================================+
Package: vcftools
Version: 0.1.16-3+b2
Source Version: 0.1.16-3
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-b632e0b0-2eb4-437e-8363-6552849e9bff' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/vcftools-7dP0Ef/resolver-FMZWYc' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.4 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.4 MB in 5s (5584 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'vcftools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/vcftools.git
Please use:
git clone https://salsa.debian.org/med-team/vcftools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 261 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main vcftools 0.1.16-3 (dsc) [2071 B]
Get:2 http://172.17.4.1/private trixie-staging/main vcftools 0.1.16-3 (tar) [245 kB]
Get:3 http://172.17.4.1/private trixie-staging/main vcftools 0.1.16-3 (diff) [14.0 kB]
Fetched 261 kB in 0s (2531 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/vcftools-7dP0Ef/vcftools-0.1.16' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/vcftools-7dP0Ef' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), pkg-config, zlib1g-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), pkg-config, zlib1g-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [641 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [673 B]
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Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libblkid1 libdebhelper-perl
libelf1 libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1
libmount1 libpipeline1 libpkgconf3 libsmartcols1 libsub-override-perl
libtool libuchardet0 libuuid1 libxml2 m4 man-db mount pkg-config pkgconf
pkgconf-bin po-debconf sensible-utils util-linux zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff cryptsetup-bin libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser nfs-common
libmail-box-perl dosfstools kbd util-linux-extra util-linux-locales
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev uuid-runtime
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu72 libmagic-mgc libmagic1
libpipeline1 libpkgconf3 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db pkg-config pkgconf pkgconf-bin po-debconf
sbuild-build-depends-main-dummy sensible-utils zlib1g-dev
The following packages will be upgraded:
bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 mount util-linux zlib1g
8 upgraded, 36 newly installed, 0 to remove and 39 not upgraded.
Need to get 21.0 MB of archives.
After this operation, 71.9 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [892 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.3-6 [87.1 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.3-6 [1113 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.3-6 [134 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf zlib1g armhf 1:1.3.dfsg-3 [74.3 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.3-6 [145 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.3-6 [168 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.3-6 [102 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.3-6 [28.3 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-6 [81.4 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-3 [1358 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.9 [82.3 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.9 [956 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
debconf: delaying package configuration, since apt-utils is not installed
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Processing triggers for libc-bin (2.37-12+rpi2) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-7+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-7+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-13+rpi1 cpp-13_13.2.0-7+rpi1 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.9 debianutils_5.14 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-7+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-13+rpi1 gcc-12-base_12.3.0-13+rpi1 gcc-13_13.2.0-7+rpi1 gcc-13-base_13.2.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-7+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-7+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libbinutils_2.41-6+rpi1 libblkid1_2.39.3-6 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcap-ng0_0.8.3-3 libcap2_1:2.66-4 libcc1-0_13.2.0-7+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdpkg-perl_1.22.1+rpi1 libelf1_0.188-2.1+rpi1 libext2fs2_1.47.0-2 libfakeroot_1.32.2-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.3.0-13+rpi1 libgcc-13-dev_13.2.0-7+rpi1 libgcc-s1_13.2.0-7+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-7+rpi1 libgpg-error0_1.47-3 libgssapi-krb5-2_1.20.1-5 libhogweed6_3.9.1-2 libicu72_72.1-4 libidn2-0_2.3.4-1 libisl23_0.26-3 libjansson4_2.14-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblocale-gettext-perl_1.07-6 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.5-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmount1_2.39.3-6 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libncursesw6_6.4+20231209-1 libnettle8_3.9.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-3 libnsl2_1.3.0-3 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.3-2 libpam-modules_1.5.2-9.1 libpam-modules-bin_1.5.2-9.1 libpam-runtime_1.5.2-9.1 libpam0g_1.5.2-9.1 libpcre2-8-0_10.42-4 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-1 libreadline8_8.2-3 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+rpi1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsmartcols1_2.39.3-6 libsqlite3-0_3.44.2-1 libss2_1.47.0-2 libssl3_3.1.4-2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 libsub-override-perl_0.10-1 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtext-charwidth-perl_0.04-11 libtext-glob-perl_0.11-3 libtext-iconv-perl_1.7-8 libtinfo6_6.4+20231209-1 libtirpc-common_1.3.4+ds-1 libtirpc-dev_1.3.4+ds-1 libtirpc3_1.3.4+ds-1 libtool_2.4.7-7 libubsan1_13.2.0-7+rpi1 libuchardet0_0.0.8-1 libudev1_254.5-1+rpi1 libunistring5_1.1-2 libuuid1_2.39.3-6 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-3 mawk_1.3.4.20231126-1 mount_2.39.3-6 nano_7.2-1 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.36_5.36.0-10 pinentry-curses_1.2.1-3 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.34+dfsg-1.3 tzdata_2023c-11 usr-is-merged_38 usrmerge_38 util-linux_2.39.3-6 xz-utils_5.4.5-0.1 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: vcftools
Binary: vcftools
Architecture: any
Version: 0.1.16-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Thorsten Alteholz <debian@alteholz.de>, Andreas Tille <tille@debian.org>
Homepage: https://vcftools.github.io/
Standards-Version: 4.6.0
Vcs-Browser: https://salsa.debian.org/med-team/vcftools
Vcs-Git: https://salsa.debian.org/med-team/vcftools.git
Testsuite: autopkgtest
Testsuite-Triggers: libtest-most-perl, tabix
Build-Depends: debhelper-compat (= 13), pkg-config, zlib1g-dev
Package-List:
vcftools deb science optional arch=any
Checksums-Sha1:
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a4936e15f603f6444e37d0cd7048f96cea3a10d7 13968 vcftools_0.1.16-3.debian.tar.xz
Checksums-Sha256:
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45443fb86bc37c71fc7f4cf2137cef7656ea06d97fdd2cdb549c34555ec88919 13968 vcftools_0.1.16-3.debian.tar.xz
Files:
4b96ec3a1dedeb879a71ecb0c4578548 244585 vcftools_0.1.16.orig.tar.gz
781ec5bc24d85bd9bd2142fabc25a799 13968 vcftools_0.1.16-3.debian.tar.xz
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gpgv: Signature made Thu Oct 7 06:07:18 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./vcftools_0.1.16-3.dsc: no acceptable signature found
dpkg-source: info: extracting vcftools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking vcftools_0.1.16.orig.tar.gz
dpkg-source: info: unpacking vcftools_0.1.16-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying temporary_test_fix.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying manpage.patch
dpkg-source: info: applying 0001-vcf-fix-ploidy-make-p-work-without-.-on-INC.patch
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 0.1.16-3+b2
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-b632e0b0-2eb4-437e-8363-6552849e9bff
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package vcftools
dpkg-buildpackage: info: source version 0.1.16-3+b2
dpkg-buildpackage: info: source distribution trixie-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/vcftools.substvars debian/files
rm -fr -- debian/vcftools/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p
" > debian/autoreconf.before
grep -q ^XDT_ configure.ac
autoreconf -f -i
configure.ac:16: installing './compile'
configure.ac:66: installing './config.guess'
configure.ac:66: installing './config.sub'
configure.ac:12: installing './install-sh'
configure.ac:12: installing './missing'
src/cpp/Makefile.am: installing './depcomp'
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p
" > debian/autoreconf.after
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --with-pmdir=/share/perl5
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --with-pmdir=/share/perl5
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a race-free mkdir -p... /usr/bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether g++ accepts -g... yes
checking for g++ option to enable C++11 features... none needed
checking whether make supports the include directive... yes (GNU style)
checking dependency style of g++... none
checking for gcc... gcc
checking whether the compiler supports GNU C... yes
checking whether gcc accepts -g... yes
checking for gcc option to enable C11 features... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for perl... /usr/bin/perl
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for zlib... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for arpa/inet.h... yes
checking for fcntl.h... yes
checking for limits.h... yes
checking for netdb.h... yes
checking for stdint.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking for sys/socket.h... yes
checking for unistd.h... (cached) yes
checking for _Bool... yes
checking for stdbool.h that conforms to C99... yes
checking for inline... inline
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for int8_t... yes
checking for off_t... yes
checking for size_t... yes
checking for ssize_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint8_t... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for error_at_line... yes
checking build system type... arm-unknown-linux-gnueabihf
checking host system type... arm-unknown-linux-gnueabihf
checking for GNU libc compatible malloc... yes
checking for GNU libc compatible realloc... yes
checking for gethostbyaddr... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... no
checking for select... yes
checking for socket... yes
checking for sqrt... no
checking for strchr... yes
checking for strdup... yes
checking for strerror... yes
checking for strstr... yes
checking for strtol... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/cpp/Makefile
config.status: creating src/perl/Makefile
config.status: creating config.h
config.status: executing depfiles commands
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a
make -j4
make[1]: Entering directory '/<<PKGBUILDDIR>>'
make all-recursive
make[2]: Entering directory '/<<PKGBUILDDIR>>'
Making all in src
make[3]: Entering directory '/<<PKGBUILDDIR>>/src'
Making all in cpp
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/cpp'
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-bcf_entry.o `test -f 'bcf_entry.cpp' || echo './'`bcf_entry.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-bcf_entry_setters.o `test -f 'bcf_entry_setters.cpp' || echo './'`bcf_entry_setters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-bcf_file.o `test -f 'bcf_file.cpp' || echo './'`bcf_file.cpp
gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-bgzf.o `test -f 'bgzf.c' || echo './'`bgzf.c
bgzf.c: In function ‘bgzf_check_EOF’:
bgzf.c:60:34: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
60 | #define _bgzf_read(fp, buf, len) fread((buf), 1, (len), (FILE*)(fp))
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bgzf.c:622:9: note: in expansion of macro ‘_bgzf_read’
622 | _bgzf_read(fp->fp, buf, 28);
| ^~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-dgeev.o `test -f 'dgeev.cpp' || echo './'`dgeev.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-entry.o `test -f 'entry.cpp' || echo './'`entry.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-entry_filters.o `test -f 'entry_filters.cpp' || echo './'`entry_filters.cpp
In file included from /usr/include/c++/13/vector:72,
from entry.h:12,
from bcf_entry.h:10,
from bcf_entry_setters.cpp:9:
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
529 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void bcf_entry::set_indv_GQUALITY(unsigned int, const float&)’ at bcf_entry_setters.cpp:333:18:
/usr/include/c++/13/bits/stl_vector.h:1034:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1034 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void bcf_entry::set_indv_GQUALITY(unsigned int, const std::vector<char>&)’ at bcf_entry_setters.cpp:316:18:
/usr/include/c++/13/bits/stl_vector.h:1034:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1034 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-entry_getters.o `test -f 'entry_getters.cpp' || echo './'`entry_getters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-entry_setters.o `test -f 'entry_setters.cpp' || echo './'`entry_setters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-gamma.o `test -f 'gamma.cpp' || echo './'`gamma.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-header.o `test -f 'header.cpp' || echo './'`header.cpp
gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-knetfile.o `test -f 'knetfile.c' || echo './'`knetfile.c
In file included from knetfile.c:46:
knetfile.c: In function ‘kftp_send_cmd’:
knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
| ^~~~~~~~~~~~~~~~~~~
knetfile.c:236:9: note: in expansion of macro ‘netwrite’
236 | netwrite(ftp->ctrl_fd, cmd, strlen(cmd));
| ^~~~~~~~
knetfile.c: In function ‘khttp_connect_file’:
knetfile.h:9:32: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
9 | #define netwrite(fd, ptr, len) write(fd, ptr, len)
| ^~~~~~~~~~~~~~~~~~~
knetfile.c:415:9: note: in expansion of macro ‘netwrite’
415 | netwrite(fp->fd, buf, l);
| ^~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-output_log.o `test -f 'output_log.cpp' || echo './'`output_log.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-parameters.o `test -f 'parameters.cpp' || echo './'`parameters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-variant_file.o `test -f 'variant_file.cpp' || echo './'`variant_file.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-variant_file_diff.o `test -f 'variant_file_diff.cpp' || echo './'`variant_file_diff.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-variant_file_filters.o `test -f 'variant_file_filters.cpp' || echo './'`variant_file_filters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-variant_file_format_convert.o `test -f 'variant_file_format_convert.cpp' || echo './'`variant_file_format_convert.cpp
variant_file_filters.cpp: In member function ‘void variant_file::filter_individuals_randomly(int)’:
variant_file_filters.cpp:129:23: warning: ‘void std::random_shuffle(_RAIter, _RAIter) [with _RAIter = __gnu_cxx::__normal_iterator<unsigned int*, vector<unsigned int> >]’ is deprecated: use 'std::shuffle' instead [-Wdeprecated-declarations]
129 | random_shuffle(keep_index.begin(), keep_index.end()); // Get a random order
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/algorithm:61,
from variant_file.h:15,
from variant_file_filters.cpp:7:
/usr/include/c++/13/bits/stl_algo.h:4581:5: note: declared here
4581 | random_shuffle(_RandomAccessIterator __first, _RandomAccessIterator __last)
| ^~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-variant_file_output.o `test -f 'variant_file_output.cpp' || echo './'`variant_file_output.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-vcf_entry.o `test -f 'vcf_entry.cpp' || echo './'`vcf_entry.cpp
In file included from /usr/include/c++/13/bits/stl_algobase.h:64,
from /usr/include/c++/13/algorithm:60,
from variant_file.h:15,
from variant_file_output.cpp:8:
/usr/include/c++/13/bits/stl_pair.h: In instantiation of ‘constexpr std::pair<typename std::__strip_reference_wrapper<typename std::decay<_Tp>::type>::__type, typename std::__strip_reference_wrapper<typename std::decay<_Tp2>::type>::__type> std::make_pair(_T1&&, _T2&&) [with _T1 = double&; _T2 = double&; typename __strip_reference_wrapper<typename decay<_Tp>::type>::__type = double; typename decay<_Tp>::type = double; typename __strip_reference_wrapper<typename decay<_Tp2>::type>::__type = double; typename decay<_Tp2>::type = double]’:
variant_file_output.cpp:4426:39: required from here
/usr/include/c++/13/bits/stl_pair.h:922:5: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
922 | make_pair(_T1&& __x, _T2&& __y)
| ^~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-vcf_entry_setters.o `test -f 'vcf_entry_setters.cpp' || echo './'`vcf_entry_setters.cpp
In file included from /usr/include/c++/13/vector:72,
from entry.h:12,
from vcf_entry.h:12,
from vcf_entry_setters.cpp:9:
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector<double>::iterator’ changed in GCC 7.1
529 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void vcf_entry::set_indv_GQUALITY(unsigned int, double)’ at vcf_entry_setters.cpp:181:18:
/usr/include/c++/13/bits/stl_vector.h:1034:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double> >’ changed in GCC 7.1
1034 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/set:62,
from variant_file.h:26:
/usr/include/c++/13/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple<const double&>, std::tuple<>}; _Key = double; _Val = std::pair<const double, std::pair<unsigned int, unsigned int> >; _KeyOfValue = std::_Select1st<std::pair<const double, std::pair<unsigned int, unsigned int> > >; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, std::pair<unsigned int, unsigned int> > >]’:
/usr/include/c++/13/bits/stl_tree.h:2458:7: note: parameter passing for argument of type ‘std::_Rb_tree<double, std::pair<const double, std::pair<unsigned int, unsigned int> >, std::_Select1st<std::pair<const double, std::pair<unsigned int, unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::pair<unsigned int, unsigned int> > > >::const_iterator’ changed in GCC 7.1
2458 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-vcf_file.o `test -f 'vcf_file.cpp' || echo './'`vcf_file.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o vcftools-vcftools.o `test -f 'vcftools.cpp' || echo './'`vcftools.cpp
In file included from /usr/include/c++/13/vector:72,
from /usr/include/c++/13/functional:64,
from variant_file.h:24:
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = std::pair<int, double>; _Alloc = std::allocator<std::pair<int, double> >]’:
/usr/include/c++/13/bits/vector.tcc:529:5: note: parameter passing for argument of type ‘std::vector<std::pair<int, double> >::iterator’ changed in GCC 7.1
529 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {std::pair<double, double>}; _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<std::pair<double, double> >::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {std::pair<double, double>}; _Tp = std::pair<double, double>; _Alloc = std::allocator<std::pair<double, double> >]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<double, double>*, std::vector<std::pair<double, double> > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/map:63,
from variant_file.h:28:
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = std::pair<unsigned int, unsigned int>; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, std::pair<unsigned int, unsigned int> > >]’,
inlined from ‘void variant_file::output_TsTv_by_quality(const parameters&)’ at variant_file_output.cpp:3277:21:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<double, std::pair<const double, std::pair<unsigned int, unsigned int> >, std::_Select1st<std::pair<const double, std::pair<unsigned int, unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::pair<unsigned int, unsigned int> > > >::const_iterator’ changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = double; _Tp = std::pair<unsigned int, unsigned int>; _Compare = std::less<double>; _Alloc = std::allocator<std::pair<const double, std::pair<unsigned int, unsigned int> > >]’,
inlined from ‘void variant_file::output_TsTv_by_quality(const parameters&)’ at variant_file_output.cpp:3279:21:
/usr/include/c++/13/bits/stl_map.h:513:44: note: parameter passing for argument of type ‘std::_Rb_tree<double, std::pair<const double, std::pair<unsigned int, unsigned int> >, std::_Select1st<std::pair<const double, std::pair<unsigned int, unsigned int> > >, std::less<double>, std::allocator<std::pair<const double, std::pair<unsigned int, unsigned int> > > >::const_iterator’ changed in GCC 7.1
513 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
514 | std::tuple<const key_type&>(__k),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
515 | std::tuple<>());
| ~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function ‘void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = std::pair<int, double>; _Alloc = std::allocator<std::pair<int, double> >]’,
inlined from ‘void variant_file::output_Tajima_D(const parameters&)’ at variant_file_output.cpp:4015:22:
/usr/include/c++/13/bits/stl_vector.h:1034:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<std::pair<int, double>*, std::vector<std::pair<int, double> > >’ changed in GCC 7.1
1034 | _M_fill_insert(end(), __new_size - size(), __x);
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o vcftools vcftools-bcf_entry.o vcftools-bcf_entry_setters.o vcftools-bcf_file.o vcftools-bgzf.o vcftools-dgeev.o vcftools-entry.o vcftools-entry_filters.o vcftools-entry_getters.o vcftools-entry_setters.o vcftools-gamma.o vcftools-header.o vcftools-knetfile.o vcftools-output_log.o vcftools-parameters.o vcftools-variant_file.o vcftools-variant_file_diff.o vcftools-variant_file_filters.o vcftools-variant_file_format_convert.o vcftools-variant_file_output.o vcftools-vcf_entry.o vcftools-vcf_entry_setters.o vcftools-vcf_file.o vcftools-vcftools.o -lz
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/cpp'
Making all in perl
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/perl'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/perl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src'
make[4]: Nothing to be done for 'all-am'.
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make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_test -a
make -j4 check "TESTSUITEFLAGS=-j4 --verbose" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making check in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
Making check in cpp
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/cpp'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/cpp'
Making check in perl
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/perl'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src/perl'
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make[3]: Nothing to be done for 'check-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/src'
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make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
rm -fr -- /tmp/dh-xdg-rundir-CtgUAbuf
create-stamp debian/debhelper-build-stamp
dh_prep -a
rm -f -- debian/vcftools.substvars
rm -fr -- debian/.debhelper/generated/vcftools/ debian/vcftools/ debian/tmp/
dh_auto_install --destdir=debian/vcftools/ -a
install -m0755 -d /<<PKGBUILDDIR>>/debian/vcftools
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/vcftools AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making install in src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
Making install in cpp
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/cpp'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/cpp'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/vcftools/usr/bin'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/vcftools/usr/share/man/man1'
/usr/bin/install -c vcftools '/<<PKGBUILDDIR>>/debian/vcftools/usr/bin'
/usr/bin/install -c -m 644 vcftools.1 '/<<PKGBUILDDIR>>/debian/vcftools/usr/share/man/man1'
make[4]: Leaving directory '/<<PKGBUILDDIR>>/src/cpp'
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Making install in perl
make[3]: Entering directory '/<<PKGBUILDDIR>>/src/perl'
make[4]: Entering directory '/<<PKGBUILDDIR>>/src/perl'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/vcftools/usr/bin'
/usr/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/vcftools/usr//share/perl5'
/usr/bin/install -c fill-aa fill-an-ac fill-fs fill-ref-md5 vcf-annotate vcf-compare vcf-concat vcf-consensus vcf-contrast vcf-convert vcf-fix-newlines vcf-fix-ploidy vcf-indel-stats vcf-isec vcf-merge vcf-phased-join vcf-query vcf-shuffle-cols vcf-sort vcf-stats vcf-subset vcf-to-tab vcf-tstv vcf-validator '/<<PKGBUILDDIR>>/debian/vcftools/usr/bin'
/usr/bin/install -c -m 644 FaSlice.pm Vcf.pm VcfStats.pm '/<<PKGBUILDDIR>>/debian/vcftools/usr//share/perl5'
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make[3]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f debian/vcftools.debhelper.log
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` ; do \
sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
install -m0755 -d debian/vcftools/usr/share/doc/vcftools
install -m0755 -d debian/vcftools/usr/share/doc/vcftools
cp --reflink=auto -a ./debian/README.test debian/vcftools/usr/share/doc/vcftools
cp --reflink=auto -a ./debian/tests/run-unit-test debian/vcftools/usr/share/doc/vcftools
chmod -R u\+rw,go=rX debian/vcftools/usr/share/doc
install -p -m0644 debian/copyright debian/vcftools/usr/share/doc/vcftools/copyright
rm -f debian/vcftools.debhelper.log
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs src/perl/ChangeLog
install -m0755 -d debian/vcftools/usr/share/doc/vcftools
install -p -m0644 debian/.debhelper/generated/vcftools/dh_installchangelogs.dch.trimmed debian/vcftools/usr/share/doc/vcftools/changelog.Debian
install -p -m0644 debian/.debhelper/generated/vcftools/dh_installchangelogs.dch.binnmu debian/vcftools/usr/share/doc/vcftools/changelog.Debian.armhf
install -p -m0644 src/perl/ChangeLog debian/vcftools/usr/share/doc/vcftools/changelog
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f debian/vcftools.debhelper.log
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installexamples;
mkdir -p /<<PKGBUILDDIR>>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite;
mkdir -p /<<PKGBUILDDIR>>/debian/vcftools/usr/share/doc/vcftools/examples/testdata;
cp ./examples/* /<<PKGBUILDDIR>>/debian/vcftools/usr/share/doc/vcftools/examples/testdata/;
find ./src/perl/ \( -name "*.pm" -o -name "*fill*" -o -name "test.t" \) -exec cp \{\} /<<PKGBUILDDIR>>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite \;
sed -i 's#examples#testdata#g' /<<PKGBUILDDIR>>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t;
sed -i 's#I\.\./perl/#I\.\./\.#g' /<<PKGBUILDDIR>>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t;
sed -i 's#\.\./perl/#/usr/bin/#g' /<<PKGBUILDDIR>>/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t;
for perlscript in `grep -lR '#!/usr/bin/env \+perl' debian/*/usr/share/doc/vcftools/examples` ; do \
sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installman -a
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-aa.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-fs.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-compare.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-concat.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-convert.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-isec.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-merge.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-query.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-sort.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-stats.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-subset.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./debian/mans/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcf-validator.1
install -m0755 -d debian/vcftools/usr/share/man/man1/
install -p -m0644 ./src/cpp/vcftools.1 debian/vcftools/usr/share/man/man1/vcftools.1
man-recode --to-code UTF-8 --suffix .dh-new debian/vcftools/usr/share/man/man1/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-compare.1
man-recode --to-code UTF-8 --suffix .dh-new debian/vcftools/usr/share/man/man1/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1
man-recode --to-code UTF-8 --suffix .dh-new debian/vcftools/usr/share/man/man1/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-stats.1
man-recode --to-code UTF-8 --suffix .dh-new debian/vcftools/usr/share/man/man1/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcftools.1
mv debian/vcftools/usr/share/man/man1/vcf-subset.1.dh-new debian/vcftools/usr/share/man/man1/vcf-subset.1
mv debian/vcftools/usr/share/man/man1/vcf-to-tab.1.dh-new debian/vcftools/usr/share/man/man1/vcf-to-tab.1
mv debian/vcftools/usr/share/man/man1/vcf-tstv.1.dh-new debian/vcftools/usr/share/man/man1/vcf-tstv.1
mv debian/vcftools/usr/share/man/man1/vcf-validator.1.dh-new debian/vcftools/usr/share/man/man1/vcf-validator.1
mv debian/vcftools/usr/share/man/man1/vcftools.1.dh-new debian/vcftools/usr/share/man/man1/vcftools.1
chmod 0644 -- debian/vcftools/usr/share/man/man1/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcftools.1
mv debian/vcftools/usr/share/man/man1/fill-aa.1.dh-new debian/vcftools/usr/share/man/man1/fill-aa.1
mv debian/vcftools/usr/share/man/man1/fill-an-ac.1.dh-new debian/vcftools/usr/share/man/man1/fill-an-ac.1
mv debian/vcftools/usr/share/man/man1/fill-fs.1.dh-new debian/vcftools/usr/share/man/man1/fill-fs.1
mv debian/vcftools/usr/share/man/man1/fill-ref-md5.1.dh-new debian/vcftools/usr/share/man/man1/fill-ref-md5.1
mv debian/vcftools/usr/share/man/man1/fill-rsIDs.1.dh-new debian/vcftools/usr/share/man/man1/fill-rsIDs.1
mv debian/vcftools/usr/share/man/man1/vcf-annotate.1.dh-new debian/vcftools/usr/share/man/man1/vcf-annotate.1
mv debian/vcftools/usr/share/man/man1/vcf-compare.1.dh-new debian/vcftools/usr/share/man/man1/vcf-compare.1
chmod 0644 -- debian/vcftools/usr/share/man/man1/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-compare.1
mv debian/vcftools/usr/share/man/man1/vcf-isec.1.dh-new debian/vcftools/usr/share/man/man1/vcf-isec.1
mv debian/vcftools/usr/share/man/man1/vcf-merge.1.dh-new debian/vcftools/usr/share/man/man1/vcf-merge.1
mv debian/vcftools/usr/share/man/man1/vcf-phased-join.1.dh-new debian/vcftools/usr/share/man/man1/vcf-phased-join.1
mv debian/vcftools/usr/share/man/man1/vcf-query.1.dh-new debian/vcftools/usr/share/man/man1/vcf-query.1
mv debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1.dh-new debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1
mv debian/vcftools/usr/share/man/man1/vcf-sort.1.dh-new debian/vcftools/usr/share/man/man1/vcf-sort.1
mv debian/vcftools/usr/share/man/man1/vcf-stats.1.dh-new debian/vcftools/usr/share/man/man1/vcf-stats.1
chmod 0644 -- debian/vcftools/usr/share/man/man1/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-stats.1
mv debian/vcftools/usr/share/man/man1/vcf-concat.1.dh-new debian/vcftools/usr/share/man/man1/vcf-concat.1
mv debian/vcftools/usr/share/man/man1/vcf-consensus.1.dh-new debian/vcftools/usr/share/man/man1/vcf-consensus.1
mv debian/vcftools/usr/share/man/man1/vcf-contrast.1.dh-new debian/vcftools/usr/share/man/man1/vcf-contrast.1
mv debian/vcftools/usr/share/man/man1/vcf-convert.1.dh-new debian/vcftools/usr/share/man/man1/vcf-convert.1
mv debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1.dh-new debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1
mv debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1.dh-new debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1
mv debian/vcftools/usr/share/man/man1/vcf-indel-stats.1.dh-new debian/vcftools/usr/share/man/man1/vcf-indel-stats.1
chmod 0644 -- debian/vcftools/usr/share/man/man1/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1
dh_perl -a
mv debian/vcftools.substvars.new debian/vcftools.substvars
rmdir --ignore-fail-on-non-empty --parents debian/vcftools/usr/share/perl5
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
cd debian/vcftools
chmod a-x usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/changelog.Debian.armhf usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1
gzip -9nf usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/changelog.Debian.armhf usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms -a
find debian/vcftools ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/vcftools/usr/share/doc -type f -a -true -a ! -regex 'debian/vcftools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/vcftools/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/share/perl5 -type f -perm -5 -name '*.pm' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a-X
find debian/vcftools -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing -a
dh_dwz -a
dwz -- debian/vcftools/usr/bin/vcftools
dh_strip -a
install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/a8
objcopy --only-keep-debug --compress-debug-sections debian/vcftools/usr/bin/vcftools debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/a8/4359d4c252fc118f1646d411d2aa4d649e9215.debug
chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/a8/4359d4c252fc118f1646d411d2aa4d649e9215.debug
strip --remove-section=.comment --remove-section=.note debian/vcftools/usr/bin/vcftools
objcopy --add-gnu-debuglink debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/a8/4359d4c252fc118f1646d411d2aa4d649e9215.debug debian/vcftools/usr/bin/vcftools
install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/usr/share/doc
ln -s vcftools debian/.debhelper/vcftools/dbgsym-root/usr/share/doc/vcftools-dbgsym
install -m0755 -d debian/.debhelper/vcftools
dh_makeshlibs -a
rm -f debian/vcftools/DEBIAN/shlibs
dh_shlibdeps -a
install -m0755 -d debian/vcftools/DEBIAN
dpkg-shlibdeps -Tdebian/vcftools.substvars debian/vcftools/usr/bin/vcftools
dpkg-shlibdeps: warning: debian/vcftools/usr/bin/vcftools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/vcftools/usr/bin/vcftools was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a
install -m0755 -d debian/vcftools/DEBIAN
dh_gencontrol -a
install -m0755 -d debian/vcftools/DEBIAN
echo misc:Depends= >> debian/vcftools.substvars
echo misc:Pre-Depends= >> debian/vcftools.substvars
install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/DEBIAN
dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -Pdebian/.debhelper/vcftools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=vcftools-dbgsym "-DDepends=vcftools (= \${binary:Version})" "-DDescription=debug symbols for vcftools" -DBuild-Ids=a84359d4c252fc118f1646d411d2aa4d649e9215 -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -Pdebian/vcftools
chmod 0644 -- debian/vcftools/DEBIAN/control
dh_md5sums -a
install -m0755 -d debian/vcftools/DEBIAN
cd debian/vcftools >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/vcftools/DEBIAN/md5sums
install -m0755 -d debian/.debhelper/vcftools/dbgsym-root/DEBIAN
cd debian/.debhelper/vcftools/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/vcftools/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a
dpkg-deb --root-owner-group --build debian/vcftools ..
dpkg-deb --root-owner-group --build debian/.debhelper/vcftools/dbgsym-root ..
dpkg-deb: building package 'vcftools' in '../vcftools_0.1.16-3+b2_armhf.deb'.
dpkg-deb: building package 'vcftools-dbgsym' in '../vcftools-dbgsym_0.1.16-3+b2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../vcftools_0.1.16-3+b2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../vcftools_0.1.16-3+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2024-01-19T18:40:15Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
vcftools_0.1.16-3+b2_armhf.changes:
-----------------------------------
Format: 1.8
Date: Fri, 19 Jan 2024 18:39:16 +0000
Source: vcftools (0.1.16-3)
Binary: vcftools vcftools-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 0.1.16-3+b2
Distribution: trixie-staging
Urgency: low
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Raspbian pi5 test autobuilder <root@raspbian.org>
Description:
vcftools - Collection of tools to work with VCF files
Changes:
vcftools (0.1.16-3+b2) trixie-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: vcftools (0.1.16-3)
Binary: vcftools vcftools-dbgsym
Architecture: armhf
Version: 0.1.16-3+b2
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vcftools (0.1.16-3+b2) trixie-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
.
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Build-Architecture: armhf
Build-Date: Fri, 19 Jan 2024 18:40:14 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
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automake (= 1:1.16.5-1.3),
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cpp-13 (= 13.2.0-7+rpi1),
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debconf (= 1.5.82),
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debianutils (= 5.14),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.1+rpi1),
dpkg-dev (= 1.22.1+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-7+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-13+rpi1),
gcc-12-base (= 12.3.0-13+rpi1),
gcc-13 (= 13.2.0-7+rpi1),
gcc-13-base (= 13.2.0-7+rpi1),
gettext (= 0.21-14),
gettext-base (= 0.21-14),
grep (= 3.11-3),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
hostname (= 3.23+nmu1),
init-system-helpers (= 1.66),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-3),
libarchive-zip-perl (= 1.68-1),
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libattr1 (= 1:2.5.1-4),
libaudit-common (= 1:3.1.2-1),
libaudit1 (= 1:3.1.2-1),
libbinutils (= 2.41-6+rpi1),
libblkid1 (= 2.39.3-6),
libbz2-1.0 (= 1.0.8-5+b2),
libc-bin (= 2.37-12+rpi2),
libc-dev-bin (= 2.37-12+rpi2),
libc6 (= 2.37-12+rpi2),
libc6-dev (= 2.37-12+rpi2),
libcap-ng0 (= 0.8.3-3),
libcap2 (= 1:2.66-4),
libcc1-0 (= 13.2.0-7+rpi1),
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libcrypt-dev (= 1:4.4.36-2),
libcrypt1 (= 1:4.4.36-2),
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libctf0 (= 2.41-6+rpi1),
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libgcc-12-dev (= 12.3.0-13+rpi1),
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libgpg-error0 (= 1.47-3),
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libicu72 (= 72.1-4),
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libk5crypto3 (= 1.20.1-5),
libkeyutils1 (= 1.6.3-2),
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libkrb5support0 (= 1.20.1-5),
liblz4-1 (= 1.9.4-1+rpi1+b1),
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login (= 1:4.13+dfsg1-3),
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make (= 4.3-4.1),
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mawk (= 1.3.4.20231126-1),
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tar (= 1.34+dfsg-1.3),
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Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1705689556"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
vcftools-dbgsym_0.1.16-3+b2_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 4766284 bytes: control archive=544 bytes.
394 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: vcftools-dbgsym
Source: vcftools (0.1.16-3)
Version: 0.1.16-3+b2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 4755
Depends: vcftools (= 0.1.16-3+b2)
Section: debug
Priority: optional
Description: debug symbols for vcftools
Build-Ids: a84359d4c252fc118f1646d411d2aa4d649e9215
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lrwxrwxrwx root/root 0 2024-01-19 18:39 ./usr/share/doc/vcftools-dbgsym -> vcftools
vcftools_0.1.16-3+b2_armhf.deb
------------------------------
new Debian package, version 2.0.
size 364440 bytes: control archive=3452 bytes.
720 bytes, 16 lines control
8702 bytes, 115 lines md5sums
Package: vcftools
Source: vcftools (0.1.16-3)
Version: 0.1.16-3+b2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1497
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.6), perl:any
Recommends: tabix
Section: science
Priority: optional
Homepage: https://vcftools.github.io/
Description: Collection of tools to work with VCF files
VCFtools is a program package designed for working with VCF files, such as
those generated by the 1000 Genomes Project. The aim of VCFtools is to
provide methods for working with VCF files: validating, merging, comparing
and calculate some basic population genetic statistics.
drwxr-xr-x root/root 0 2024-01-19 18:39 ./
drwxr-xr-x root/root 0 2024-01-19 18:39 ./usr/
drwxr-xr-x root/root 0 2024-01-19 18:39 ./usr/bin/
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drwxr-xr-x root/root 0 2024-01-19 18:39 ./usr/share/
drwxr-xr-x root/root 0 2024-01-19 18:39 ./usr/share/doc/
drwxr-xr-x root/root 0 2024-01-19 18:39 ./usr/share/doc/vcftools/
-rw-r--r-- root/root 261 2021-10-07 05:36 ./usr/share/doc/vcftools/README.test
-rw-r--r-- root/root 219 2024-01-19 18:39 ./usr/share/doc/vcftools/changelog.Debian.armhf.gz
-rw-r--r-- root/root 727 2024-01-19 18:39 ./usr/share/doc/vcftools/changelog.Debian.gz
-rw-r--r-- root/root 1961 2018-08-03 13:56 ./usr/share/doc/vcftools/changelog.gz
-rw-r--r-- root/root 1155 2021-10-07 05:36 ./usr/share/doc/vcftools/copyright
drwxr-xr-x root/root 0 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/
drwxr-xr-x root/root 0 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/
-rw-r--r-- root/root 1685 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/annotate-test.vcf
-rw-r--r-- root/root 1376 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/annotate.out
-rw-r--r-- root/root 299 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/annotate.txt
-rw-r--r-- root/root 3107 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/annotate2.out
-rw-r--r-- root/root 1394 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/annotate3.out
-rw-r--r-- root/root 522 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/cmp-test-a-3.3.vcf
-rw-r--r-- root/root 638 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/cmp-test-a.vcf
-rw-r--r-- root/root 520 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/cmp-test-b-3.3.vcf
-rw-r--r-- root/root 636 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/cmp-test-b.vcf
-rw-r--r-- root/root 2633 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/cmp-test.out
-rw-r--r-- root/root 1180 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/concat-a.vcf
-rw-r--r-- root/root 674 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/concat-b.vcf
-rw-r--r-- root/root 972 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/concat-c.vcf
-rw-r--r-- root/root 2074 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/concat.out
-rw-r--r-- root/root 1038 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/consensus.fa
-rw-r--r-- root/root 1037 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/consensus.out
-rw-r--r-- root/root 1037 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/consensus.out2
-rw-r--r-- root/root 275 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/consensus.vcf
-rw-r--r-- root/root 6951 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/contrast.out
-rw-r--r-- root/root 28065 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/contrast.vcf
-rw-r--r-- root/root 1524 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/fill-an-ac.out
-rw-r--r-- root/root 4901 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/filters.txt
-rw-r--r-- root/root 1924 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.out
-rw-r--r-- root/root 42 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.samples
-rw-r--r-- root/root 223 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.txt
-rw-r--r-- root/root 9005 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.vcf
-rw-r--r-- root/root 564 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/floats.vcf
-rw-r--r-- root/root 48 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/indel-stats.out
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-rw-r--r-- root/root 2086 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/invalid-4.0.vcf
-rw-r--r-- root/root 1120 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/isec-n2-test.vcf.out
-rw-r--r-- root/root 965 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/merge-test-a.vcf
-rw-r--r-- root/root 1020 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/merge-test-b.vcf
-rw-r--r-- root/root 798 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/merge-test-c.vcf
-rw-r--r-- root/root 2240 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/merge-test.vcf.out
-rw-r--r-- root/root 230 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/parse-test.vcf
-rw-r--r-- root/root 1435 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/perl-api-1.pl
-rw-r--r-- root/root 255 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/query-test.out
-rw-r--r-- root/root 638 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/shuffle-test.vcf
-rw-r--r-- root/root 522 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/subset.SNPs.out
-rw-r--r-- root/root 931 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/subset.indels.out
-rw-r--r-- root/root 1229 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/subset.vcf
-rw-r--r-- root/root 1612 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/valid-3.3.vcf
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-rw-r--r-- root/root 5161 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf.stats
-rw-r--r-- root/root 2999 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testdata/valid-4.1.vcf
drwxr-xr-x root/root 0 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testsuite/
-rw-r--r-- root/root 6724 2024-01-19 18:39 ./usr/share/doc/vcftools/examples/testsuite/FaSlice.pm
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 55068
Build-Time: 59
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 33
Job: vcftools_0.1.16-3
Machine Architecture: arm64
Package: vcftools
Package-Time: 101
Source-Version: 0.1.16-3
Space: 55068
Status: successful
Version: 0.1.16-3+b2
--------------------------------------------------------------------------------
Finished at 2024-01-19T18:40:15Z
Build needed 00:01:41, 55068k disk space