vcftools →
0.1.14+dfsg-3 →
armhf → 2016-07-12 03:11:44
sbuild (Debian sbuild) 0.66.0 (04 Oct 2015) on testwandboard
+==============================================================================+
| vcftools 0.1.14+dfsg-3 (armhf) 12 Jul 2016 02:54 |
+==============================================================================+
Package: vcftools
Version: 0.1.14+dfsg-3
Source Version: 0.1.14+dfsg-3
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/vcftools-mLptM1/vcftools-0.1.14+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/vcftools-mLptM1' with '<<BUILDDIR>>'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-b34afc34-992d-4ae5-b223-ae1dccfc3aad' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
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Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9143 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.1 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
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| Fetch source files |
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Check APT
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Checking available source versions...
Download source files with APT
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Reading package lists...
NOTICE: 'vcftools' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/vcftools.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/vcftools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 205 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main vcftools 0.1.14+dfsg-3 (dsc) [2051 B]
Get:2 http://172.17.0.1/private stretch-staging/main vcftools 0.1.14+dfsg-3 (tar) [190 kB]
Get:3 http://172.17.0.1/private stretch-staging/main vcftools 0.1.14+dfsg-3 (diff) [12.7 kB]
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Download complete and in download only mode
Check architectures
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Check dependencies
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-JE91U7/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-JE91U7/apt_archive ./ InRelease
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Get:2 file:/<<BUILDDIR>>/resolver-JE91U7/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-JE91U7/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-JE91U7/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-JE91U7/apt_archive ./ Sources [194 B]
Get:5 file:/<<BUILDDIR>>/resolver-JE91U7/apt_archive ./ Packages [506 B]
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W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-JE91U7/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
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| Install core build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 9 not upgraded.
Need to get 0 B/762 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-JE91U7/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [762 B]
debconf: delaying package configuration, since apt-utils is not installed
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Merged Build-Depends: debhelper (>= 9), dh-autoreconf, pkg-config, zlib1g-dev
Filtered Build-Depends: debhelper (>= 9), dh-autoreconf, pkg-config, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-vcftools-dummy' in '/<<BUILDDIR>>/resolver-szz_xv/apt_archive/sbuild-build-depends-vcftools-dummy.deb'.
OK
Get:1 file:/<<BUILDDIR>>/resolver-szz_xv/apt_archive ./ InRelease
Ign:1 file:/<<BUILDDIR>>/resolver-szz_xv/apt_archive ./ InRelease
Get:2 file:/<<BUILDDIR>>/resolver-szz_xv/apt_archive ./ Release [2119 B]
Get:2 file:/<<BUILDDIR>>/resolver-szz_xv/apt_archive ./ Release [2119 B]
Get:3 file:/<<BUILDDIR>>/resolver-szz_xv/apt_archive ./ Release.gpg [299 B]
Get:3 file:/<<BUILDDIR>>/resolver-szz_xv/apt_archive ./ Release.gpg [299 B]
Get:4 file:/<<BUILDDIR>>/resolver-szz_xv/apt_archive ./ Sources [216 B]
Get:5 file:/<<BUILDDIR>>/resolver-szz_xv/apt_archive ./ Packages [534 B]
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: file:///<<BUILDDIR>>/resolver-szz_xv/apt_archive/./Release.gpg: Signature by key 3493EC2B8E6DC280C121C60435506D9A48F77B2E uses weak digest algorithm (SHA1)
Reading package lists...
+------------------------------------------------------------------------------+
| Install vcftools build dependencies (apt-based resolver) |
+------------------------------------------------------------------------------+
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4
man-db pkg-config po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4
man-db pkg-config po-debconf sbuild-build-depends-vcftools-dummy zlib1g-dev
0 upgraded, 33 newly installed, 0 to remove and 9 not upgraded.
Need to get 8108 kB/18.9 MB of archives.
After this operation, 64.6 MB of additional disk space will be used.
Get:1 file:/<<BUILDDIR>>/resolver-szz_xv/apt_archive ./ sbuild-build-depends-vcftools-dummy 0.invalid.0 [794 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.10 [177 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.28-2 [269 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.28-2 [62.4 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-1 [131 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.19 [249 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.57-1 [95.1 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.019-1 [12.2 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.019-1 [7352 B]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-0.1 [200 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf debhelper all 9.20160403 [800 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
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Selecting previously unselected package sbuild-build-depends-vcftools-dummy.
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Unpacking sbuild-build-depends-vcftools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.22-11) ...
Setting up groff-base (1.22.3-8) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up bsdmainutils (9.0.10) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libmagic1:armhf (1:5.28-2) ...
Setting up file (1:5.28-2) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libicu55:armhf (55.1-7) ...
Setting up libxml2:armhf (2.9.3+dfsg1-1.2) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up m4 (1.4.17-5) ...
Setting up autoconf (2.69-10) ...
Setting up autotools-dev (20160430.1) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.19.8.1-1) ...
Setting up libffi6:armhf (3.2.1-4) ...
Setting up libglib2.0-0:armhf (2.48.1-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.11-1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
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Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.19) ...
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Setting up libtimedate-perl (2.3000-2) ...
Setting up libtool (2.4.6-0.1) ...
Setting up pkg-config (0.29-4) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up dh-autoreconf (12) ...
Setting up debhelper (9.20160403) ...
Setting up sbuild-build-depends-vcftools-dummy (0.invalid.0) ...
Setting up dh-strip-nondeterminism (0.019-1) ...
Processing triggers for libc-bin (2.22-11) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.5.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.26.1-1 dpkg-dev_1.18.7 g++-5_5.4.0-4 gcc-5_5.4.0-4 libc6-dev_2.22-11 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.2.14 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.39 bash_4.3-15 binutils_2.26.1-1 bsdmainutils_9.0.10 bsdutils_1:2.28-5 build-essential_11.7 bzip2_1.0.6-8 console-setup_1.146 console-setup-linux_1.146 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:5.3.1-3 cpp-5_5.4.0-4 dash_0.5.8-2.2 debconf_1.5.59 debfoster_2.7-2 debhelper_9.20160403 debianutils_4.8 dh-autoreconf_12 dh-strip-nondeterminism_0.019-1 diffutils_1:3.3-3 dmsetup_2:1.02.127-1 dpkg_1.18.7 dpkg-dev_1.18.7 e2fslibs_1.43.1-1 e2fsprogs_1.43.1-1 fakeroot_1.21-1 file_1:5.28-2 findutils_4.6.0+git+20160517-5 fuse2fs_1.43.1-1 g++_4:5.3.1-3 g++-5_5.4.0-4 gcc_4:5.3.1-3 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5_5.4.0-4 gcc-5-base_5.4.0-4 gcc-6-base_6.1.1-1+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_1.4.20-6 gpgv_1.4.20-6 grep_2.25-6 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.17 ifupdown_0.8.13 init_1.36 init-system-helpers_1.36 initscripts_2.88dsf-59.7 insserv_1.14.0-5.3 intltool-debian_0.35.0+20060710.4 iproute2_4.3.0-1 kbd_2.0.3-2 keyboard-configuration_1.146 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10.95-4 libapt-pkg5.0_1.2.14 libarchive-zip-perl_1.57-1 libasan2_5.4.0-4 libatm1_1:2.5.1-1.6 libatomic1_6.1.1-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.5.2-1+rpi1 libaudit1_1:2.5.2-1+rpi1 libblkid1_2.28-5 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.22-11 libc-dev-bin_2.22-11 libc6_2.22-11 libc6-dev_2.22-11 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.1.1-1+rpi1 libcomerr2_1.43.1-1 libcroco3_0.6.11-1 libcryptsetup4_2:1.7.0-2 libdb5.3_5.3.28-11 libdbus-1-3_1.10.8-1 libdebconfclient0_0.213 libdevmapper1.02.1_2:1.02.127-1 libdpkg-perl_1.18.7 libdrm2_2.4.68-1 libfakeroot_1.21-1 libfdisk1_2.28-5 libffi6_3.2.1-4 libfile-stripnondeterminism-perl_0.019-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-5-dev_5.4.0-4 libgcc1_1:6.1.1-1+rpi1 libgcrypt20_1.7.1-2 libgdbm3_1.8.3-14 libglib2.0-0_2.48.1-1 libgmp10_2:6.1.1+dfsg-1 libgomp1_6.1.1-1+rpi1 libgpg-error0_1.23-1 libicu55_55.1-7 libidn11_1.32-3.1 libisl15_0.17.1-1 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 liblocale-gettext-perl_1.07-2 liblz4-1_0.0~r131-2 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.28-2 libmount1_2.28-5 libmpc3_1.0.3-1 libmpfr4_3.1.4-2 libncurses5_6.0+20160319-2 libncursesw5_6.0+20160319-2 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.38-3.1 libperl5.22_5.22.2-1 libpipeline1_1.4.1-2 libplymouth4_0.9.2-3 libpng12-0_1.2.54-6 libprocps5_2:3.3.11-3 libreadline6_6.3-8+b3 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsmartcols1_2.28-5 libss2_1.43.1-1 libstdc++-5-dev_5.4.0-4 libstdc++6_6.1.1-1+rpi1 libsystemd0_230-5 libtext-charwidth-perl_0.04-7+b6 libtext-iconv-perl_1.7-5+b7 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160319-2 libtool_2.4.6-0.1 libubsan0_6.1.1-1+rpi1 libudev1_230-5 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28-5 libxml2_2.9.3+dfsg1-1.2 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.1 lsb-base_9.20160601+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.06-1 mawk_1.3.3-17 mount_2.28-5 multiarch-support_2.22-11 ncurses-base_6.0+20160319-2 ncurses-bin_6.0+20160319-2 netbase_5.3 passwd_1:4.2-3.1 patch_2.7.5-1 perl_5.22.2-1 perl-base_5.22.2-1 perl-modules-5.22_5.22.2-1 pkg-config_0.29-4 po-debconf_1.0.19 procps_2:3.3.11-3 psmisc_22.21-2.1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-vcftools-dummy_0.invalid.0 sed_4.2.2-7.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_230-5 systemd-sysv_230-5 sysv-rc_2.88dsf-59.7 sysvinit-utils_2.88dsf-59.7 tar_1.29-1+rpi1 tzdata_2016e-1 udev_230-5 util-linux_2.28-5 xkb-data_2.17-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sun Jul 3 20:36:46 2016 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./vcftools_0.1.14+dfsg-3.dsc
dpkg-source: info: extracting vcftools in vcftools-0.1.14+dfsg
dpkg-source: info: unpacking vcftools_0.1.14+dfsg.orig.tar.xz
dpkg-source: info: unpacking vcftools_0.1.14+dfsg-3.debian.tar.xz
dpkg-source: info: applying temporary_test_fix.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying manpage.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-b34afc34-992d-4ae5-b223-ae1dccfc3aad
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package vcftools
dpkg-buildpackage: info: source version 0.1.14+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build vcftools-0.1.14+dfsg
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf
dh_testdir
dh_auto_clean
dh_autoreconf_clean
dh_clean
rm -f debian/debhelper-build-stamp
rm -f debian/vcftools.substvars
rm -f debian/vcftools.*.debhelper
rm -rf debian/vcftools/
rm -rf debian/.debhelper/
rm -f debian/*.debhelper.log
rm -f debian/files
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
rm -f *-stamp
debian/rules build-arch
dh build-arch --with autoreconf
dh_testdir -a
dh_update_autotools_config -a
dh_autoreconf -a
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.before
autoreconf -f -i
configure.ac:16: installing './compile'
configure.ac:12: installing './install-sh'
configure.ac:12: installing './missing'
src/cpp/Makefile.am: installing './depcomp'
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.after
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
dh_auto_configure -- --with-pmdir=/usr/share/perl5
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --with-pmdir=/usr/share/perl5
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for perl... /usr/bin/perl
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for ZLIB... yes
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for stdint.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for unistd.h... (cached) yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for inline... inline
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for int8_t... yes
checking for off_t... yes
checking for size_t... yes
checking for ssize_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint8_t... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for error_at_line... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking for gethostbyaddr... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... no
checking for select... yes
checking for socket... yes
checking for sqrt... no
checking for strchr... yes
checking for strdup... yes
checking for strerror... yes
checking for strstr... yes
checking for strtol... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/cpp/Makefile
config.status: creating src/perl/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
make[1]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
dh_auto_build -a
make -j1
make[1]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
make all-recursive
make[2]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
Making all in src
make[3]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
Making all in cpp
make[4]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/cpp'
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_entry.o `test -f 'bcf_entry.cpp' || echo './'`bcf_entry.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_entry_setters.o `test -f 'bcf_entry_setters.cpp' || echo './'`bcf_entry_setters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_file.o `test -f 'bcf_file.cpp' || echo './'`bcf_file.cpp
gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bgzf.o `test -f 'bgzf.c' || echo './'`bgzf.c
bgzf.c: In function 'bgzf_check_EOF':
bgzf.c:60:34: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
#define _bgzf_read(fp, buf, len) fread((buf), 1, (len), (FILE*)(fp))
^
bgzf.c:622:2: note: in expansion of macro '_bgzf_read'
_bgzf_read(fp->fp, buf, 28);
^
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-dgeev.o `test -f 'dgeev.cpp' || echo './'`dgeev.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry.o `test -f 'entry.cpp' || echo './'`entry.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_filters.o `test -f 'entry_filters.cpp' || echo './'`entry_filters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_getters.o `test -f 'entry_getters.cpp' || echo './'`entry_getters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_setters.o `test -f 'entry_setters.cpp' || echo './'`entry_setters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-gamma.o `test -f 'gamma.cpp' || echo './'`gamma.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-header.o `test -f 'header.cpp' || echo './'`header.cpp
gcc -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-knetfile.o `test -f 'knetfile.c' || echo './'`knetfile.c
In file included from knetfile.c:46:0:
knetfile.c: In function 'kftp_send_cmd':
knetfile.h:9:32: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
#define netwrite(fd, ptr, len) write(fd, ptr, len)
^
knetfile.c:236:2: note: in expansion of macro 'netwrite'
netwrite(ftp->ctrl_fd, cmd, strlen(cmd));
^
knetfile.c: In function 'khttp_connect_file':
knetfile.h:9:32: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
#define netwrite(fd, ptr, len) write(fd, ptr, len)
^
knetfile.c:415:2: note: in expansion of macro 'netwrite'
netwrite(fp->fd, buf, l);
^
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-output_log.o `test -f 'output_log.cpp' || echo './'`output_log.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-parameters.o `test -f 'parameters.cpp' || echo './'`parameters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file.o `test -f 'variant_file.cpp' || echo './'`variant_file.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_diff.o `test -f 'variant_file_diff.cpp' || echo './'`variant_file_diff.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_filters.o `test -f 'variant_file_filters.cpp' || echo './'`variant_file_filters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_format_convert.o `test -f 'variant_file_format_convert.cpp' || echo './'`variant_file_format_convert.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_output.o `test -f 'variant_file_output.cpp' || echo './'`variant_file_output.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_entry.o `test -f 'vcf_entry.cpp' || echo './'`vcf_entry.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_entry_setters.o `test -f 'vcf_entry_setters.cpp' || echo './'`vcf_entry_setters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_file.o `test -f 'vcf_file.cpp' || echo './'`vcf_file.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcftools.o `test -f 'vcftools.cpp' || echo './'`vcftools.cpp
g++ -g -O2 -fPIE -fstack-protector-strong -Wformat -Werror=format-security -fPIE -pie -Wl,-z,relro -Wl,-z,now -o vcftools vcftools-bcf_entry.o vcftools-bcf_entry_setters.o vcftools-bcf_file.o vcftools-bgzf.o vcftools-dgeev.o vcftools-entry.o vcftools-entry_filters.o vcftools-entry_getters.o vcftools-entry_setters.o vcftools-gamma.o vcftools-header.o vcftools-knetfile.o vcftools-output_log.o vcftools-parameters.o vcftools-variant_file.o vcftools-variant_file_diff.o vcftools-variant_file_filters.o vcftools-variant_file_format_convert.o vcftools-variant_file_output.o vcftools-vcf_entry.o vcftools-vcf_entry_setters.o vcftools-vcf_file.o vcftools-vcftools.o -lz
make[4]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/cpp'
Making all in perl
make[4]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/perl'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/perl'
make[4]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
make[4]: Nothing to be done for 'all-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
make[3]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
make[3]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
dh_auto_test -a
make -j1 check VERBOSE=1
make[1]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
Making check in src
make[2]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
Making check in cpp
make[3]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/cpp'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/cpp'
Making check in perl
make[3]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/perl'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/perl'
make[3]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
make[3]: Nothing to be done for 'check-am'.
make[3]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
make[2]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
fakeroot debian/rules binary-arch
dh binary-arch --with autoreconf
dh_testroot -a
dh_prep -a
rm -f debian/vcftools.substvars
rm -f debian/vcftools.*.debhelper
rm -rf debian/vcftools/
dh_auto_install -a
install -d debian/vcftools
make -j1 install DESTDIR=/<<BUILDDIR>>/vcftools-0.1.14\+dfsg/debian/vcftools AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
Making install in src
make[2]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
Making install in cpp
make[3]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/cpp'
make[4]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/cpp'
/bin/mkdir -p '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/bin'
/usr/bin/install -c vcftools '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/bin'
/bin/mkdir -p '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/man/man1'
/usr/bin/install -c -m 644 vcftools.1 '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/man/man1'
make[4]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/cpp'
make[3]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/cpp'
Making install in perl
make[3]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/perl'
make[4]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/perl'
/bin/mkdir -p '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/bin'
/usr/bin/install -c fill-aa fill-an-ac fill-fs fill-ref-md5 vcf-annotate vcf-compare vcf-concat vcf-consensus vcf-contrast vcf-convert vcf-fix-newlines vcf-fix-ploidy vcf-indel-stats vcf-isec vcf-merge vcf-phased-join vcf-query vcf-shuffle-cols vcf-sort vcf-stats vcf-subset vcf-to-tab vcf-tstv vcf-validator '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/bin'
/bin/mkdir -p '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/perl5'
/usr/bin/install -c -m 644 FaSlice.pm Vcf.pm VcfStats.pm '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/perl5'
make[4]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/perl'
make[3]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src/perl'
make[3]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
make[4]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
make[3]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
make[2]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg/src'
make[2]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
make[3]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
make[2]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
make[1]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
dh_installdocs -a
install -d debian/vcftools/usr/share/doc/vcftools
install -p -m0644 debian/copyright debian/vcftools/usr/share/doc/vcftools/copyright
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
dh_installchangelogs src/perl/ChangeLog
install -p -m0644 debian/changelog debian/vcftools/usr/share/doc/vcftools/changelog.Debian
install -p -m0644 src/perl/ChangeLog debian/vcftools/usr/share/doc/vcftools/changelog
make[1]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
debian/rules override_dh_installexamples
make[1]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
dh_installexamples;
mkdir -p /<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/doc/vcftools/examples/testsuite;
mkdir -p /<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/doc/vcftools/examples/testdata;
cp ./examples/* /<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/doc/vcftools/examples/testdata/;
find ./src/perl/ \( -name "*.pm" -o -name "*fill*" -o -name "test.t" \) -exec cp \{\} /<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/doc/vcftools/examples/testsuite \;
sed -i 's#examples#testdata#g' /<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t;
sed -i 's#I\.\./perl/#I\.\./\.#g' /<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t;
sed -i 's#\.\./perl/#/usr/bin/#g' /<<BUILDDIR>>/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/doc/vcftools/examples/testsuite/test.t;
make[1]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
dh_installman -a
install -p -m0644 debian/mans/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-aa.1
install -p -m0644 debian/mans/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1
install -p -m0644 debian/mans/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-fs.1
install -p -m0644 debian/mans/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1
install -p -m0644 debian/mans/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1
install -p -m0644 debian/mans/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1
install -p -m0644 debian/mans/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-compare.1
install -p -m0644 debian/mans/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-concat.1
install -p -m0644 debian/mans/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1
install -p -m0644 debian/mans/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1
install -p -m0644 debian/mans/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-convert.1
install -p -m0644 debian/mans/vcf-fix-newlines.1 debian/vcftools/usr/share/man/man1/vcf-fix-newlines.1
install -p -m0644 debian/mans/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1
install -p -m0644 debian/mans/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1
install -p -m0644 debian/mans/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-isec.1
install -p -m0644 debian/mans/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-merge.1
install -p -m0644 debian/mans/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1
install -p -m0644 debian/mans/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-query.1
install -p -m0644 debian/mans/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1
install -p -m0644 debian/mans/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-sort.1
install -p -m0644 debian/mans/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-stats.1
install -p -m0644 debian/mans/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-subset.1
install -p -m0644 debian/mans/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1
install -p -m0644 debian/mans/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1
install -p -m0644 debian/mans/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcf-validator.1
install -p -m0644 src/cpp/vcftools.1 debian/vcftools/usr/share/man/man1/vcftools.1
man --recode UTF-8 ./fill\-aa\.1 > fill\-aa\.1\.new
chmod 644 fill-aa.1.new
mv -f fill-aa.1.new fill-aa.1
man --recode UTF-8 ./fill\-an\-ac\.1 > fill\-an\-ac\.1\.new
chmod 644 fill-an-ac.1.new
mv -f fill-an-ac.1.new fill-an-ac.1
man --recode UTF-8 ./fill\-fs\.1 > fill\-fs\.1\.new
chmod 644 fill-fs.1.new
mv -f fill-fs.1.new fill-fs.1
man --recode UTF-8 ./fill\-ref\-md5\.1 > fill\-ref\-md5\.1\.new
chmod 644 fill-ref-md5.1.new
mv -f fill-ref-md5.1.new fill-ref-md5.1
man --recode UTF-8 ./fill\-rsIDs\.1 > fill\-rsIDs\.1\.new
chmod 644 fill-rsIDs.1.new
mv -f fill-rsIDs.1.new fill-rsIDs.1
man --recode UTF-8 ./vcf\-annotate\.1 > vcf\-annotate\.1\.new
chmod 644 vcf-annotate.1.new
mv -f vcf-annotate.1.new vcf-annotate.1
man --recode UTF-8 ./vcf\-compare\.1 > vcf\-compare\.1\.new
chmod 644 vcf-compare.1.new
mv -f vcf-compare.1.new vcf-compare.1
man --recode UTF-8 ./vcf\-concat\.1 > vcf\-concat\.1\.new
chmod 644 vcf-concat.1.new
mv -f vcf-concat.1.new vcf-concat.1
man --recode UTF-8 ./vcf\-consensus\.1 > vcf\-consensus\.1\.new
chmod 644 vcf-consensus.1.new
mv -f vcf-consensus.1.new vcf-consensus.1
man --recode UTF-8 ./vcf\-contrast\.1 > vcf\-contrast\.1\.new
chmod 644 vcf-contrast.1.new
mv -f vcf-contrast.1.new vcf-contrast.1
man --recode UTF-8 ./vcf\-convert\.1 > vcf\-convert\.1\.new
chmod 644 vcf-convert.1.new
mv -f vcf-convert.1.new vcf-convert.1
man --recode UTF-8 ./vcf\-fix\-newlines\.1 > vcf\-fix\-newlines\.1\.new
chmod 644 vcf-fix-newlines.1.new
mv -f vcf-fix-newlines.1.new vcf-fix-newlines.1
man --recode UTF-8 ./vcf\-fix\-ploidy\.1 > vcf\-fix\-ploidy\.1\.new
chmod 644 vcf-fix-ploidy.1.new
mv -f vcf-fix-ploidy.1.new vcf-fix-ploidy.1
man --recode UTF-8 ./vcf\-indel\-stats\.1 > vcf\-indel\-stats\.1\.new
chmod 644 vcf-indel-stats.1.new
mv -f vcf-indel-stats.1.new vcf-indel-stats.1
man --recode UTF-8 ./vcf\-isec\.1 > vcf\-isec\.1\.new
chmod 644 vcf-isec.1.new
mv -f vcf-isec.1.new vcf-isec.1
man --recode UTF-8 ./vcf\-merge\.1 > vcf\-merge\.1\.new
chmod 644 vcf-merge.1.new
mv -f vcf-merge.1.new vcf-merge.1
man --recode UTF-8 ./vcf\-phased\-join\.1 > vcf\-phased\-join\.1\.new
chmod 644 vcf-phased-join.1.new
mv -f vcf-phased-join.1.new vcf-phased-join.1
man --recode UTF-8 ./vcf\-query\.1 > vcf\-query\.1\.new
chmod 644 vcf-query.1.new
mv -f vcf-query.1.new vcf-query.1
man --recode UTF-8 ./vcf\-shuffle\-cols\.1 > vcf\-shuffle\-cols\.1\.new
chmod 644 vcf-shuffle-cols.1.new
mv -f vcf-shuffle-cols.1.new vcf-shuffle-cols.1
man --recode UTF-8 ./vcf\-sort\.1 > vcf\-sort\.1\.new
chmod 644 vcf-sort.1.new
mv -f vcf-sort.1.new vcf-sort.1
man --recode UTF-8 ./vcf\-stats\.1 > vcf\-stats\.1\.new
chmod 644 vcf-stats.1.new
mv -f vcf-stats.1.new vcf-stats.1
man --recode UTF-8 ./vcf\-subset\.1 > vcf\-subset\.1\.new
chmod 644 vcf-subset.1.new
mv -f vcf-subset.1.new vcf-subset.1
man --recode UTF-8 ./vcf\-to\-tab\.1 > vcf\-to\-tab\.1\.new
chmod 644 vcf-to-tab.1.new
mv -f vcf-to-tab.1.new vcf-to-tab.1
man --recode UTF-8 ./vcf\-tstv\.1 > vcf\-tstv\.1\.new
chmod 644 vcf-tstv.1.new
mv -f vcf-tstv.1.new vcf-tstv.1
man --recode UTF-8 ./vcf\-validator\.1 > vcf\-validator\.1\.new
chmod 644 vcf-validator.1.new
mv -f vcf-validator.1.new vcf-validator.1
man --recode UTF-8 ./vcftools\.1 > vcftools\.1\.new
chmod 644 vcftools.1.new
mv -f vcftools.1.new vcftools.1
dh_perl -a
(grep -a -s -v perl:Depends debian/vcftools.substvars; echo perl:Depends=perl) > debian/vcftools.substvars.new
mv debian/vcftools.substvars.new debian/vcftools.substvars
rmdir --ignore-fail-on-non-empty --parents debian/vcftools/usr/share/perl5
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
cd debian/vcftools
chmod a-x usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/examples/testdata/contrast.out usr/share/doc/vcftools/examples/testdata/contrast.vcf usr/share/doc/vcftools/examples/testdata/filters.txt usr/share/doc/vcftools/examples/testdata/fix-ploidy.vcf usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf.stats usr/share/doc/vcftools/examples/testsuite/FaSlice.pm usr/share/doc/vcftools/examples/testsuite/Vcf.pm usr/share/doc/vcftools/examples/testsuite/VcfStats.pm usr/share/doc/vcftools/examples/testsuite/fill-aa usr/share/doc/vcftools/examples/testsuite/fill-fs usr/share/doc/vcftools/examples/testsuite/fill-ref-md5 usr/share/doc/vcftools/examples/testsuite/test.t usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1
gzip -9nf usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/examples/testdata/contrast.out usr/share/doc/vcftools/examples/testdata/contrast.vcf usr/share/doc/vcftools/examples/testdata/filters.txt usr/share/doc/vcftools/examples/testdata/fix-ploidy.vcf usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf.stats usr/share/doc/vcftools/examples/testsuite/FaSlice.pm usr/share/doc/vcftools/examples/testsuite/Vcf.pm usr/share/doc/vcftools/examples/testsuite/VcfStats.pm usr/share/doc/vcftools/examples/testsuite/fill-aa usr/share/doc/vcftools/examples/testsuite/fill-fs usr/share/doc/vcftools/examples/testsuite/fill-ref-md5 usr/share/doc/vcftools/examples/testsuite/test.t usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-newlines.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1
cd '/<<BUILDDIR>>/vcftools-0.1.14+dfsg'
dh_fixperms -a
find debian/vcftools -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/vcftools ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/vcftools/usr/share/doc -type f ! -regex 'debian/vcftools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755
find debian/vcftools/usr/share/man debian/vcftools/usr/man/ debian/vcftools/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/lib/arm-linux-gnueabihf/perl5/5.22 debian/vcftools/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
find debian/vcftools -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
find debian/vcftools/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
dh_strip -a
install -d debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/ed
objcopy --only-keep-debug --compress-debug-sections debian/vcftools/usr/bin/vcftools debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/ed/c8fcc228d47e75697338b655c4ed87a38c3a34.debug
chmod 0644 debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/ed/c8fcc228d47e75697338b655c4ed87a38c3a34.debug
strip --remove-section=.comment --remove-section=.note debian/vcftools/usr/bin/vcftools
objcopy --add-gnu-debuglink debian/.debhelper/vcftools/dbgsym-root/usr/lib/debug/.build-id/ed/c8fcc228d47e75697338b655c4ed87a38c3a34.debug debian/vcftools/usr/bin/vcftools
install -d debian/.debhelper/vcftools/dbgsym-root/usr/share/doc
ln -s vcftools debian/.debhelper/vcftools/dbgsym-root/usr/share/doc/vcftools-dbgsym
dh_makeshlibs -a
rm -f debian/vcftools/DEBIAN/shlibs
dh_shlibdeps -a
install -d debian/vcftools/DEBIAN
dpkg-shlibdeps -Tdebian/vcftools.substvars debian/vcftools/usr/bin/vcftools
dh_installdeb -a
dh_gencontrol -a
echo misc:Depends= >> debian/vcftools.substvars
echo misc:Pre-Depends= >> debian/vcftools.substvars
install -d debian/.debhelper/vcftools/dbgsym-root/DEBIAN
dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -Pdebian/.debhelper/vcftools/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=extra -DAuto-Built-Package=debug-symbols -DPackage=vcftools-dbgsym "-DDepends=vcftools (= \${binary:Version})" "-DDescription=Debug symbols for vcftools" -DBuild-Ids=edc8fcc228d47e75697338b655c4ed87a38c3a34 -DSection=debug -UMulti-Arch -UReplaces -UBreaks
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 0644 debian/.debhelper/vcftools/dbgsym-root/DEBIAN/control
chown 0:0 debian/.debhelper/vcftools/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -Pdebian/vcftools
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 0644 debian/vcftools/DEBIAN/control
chown 0:0 debian/vcftools/DEBIAN/control
dh_md5sums -a
(cd debian/vcftools >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
chmod 0644 debian/vcftools/DEBIAN/md5sums
chown 0:0 debian/vcftools/DEBIAN/md5sums
(cd debian/.debhelper/vcftools/dbgsym-root >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
chmod 0644 debian/.debhelper/vcftools/dbgsym-root/DEBIAN/md5sums
chown 0:0 debian/.debhelper/vcftools/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a
dpkg-deb -z1 -Zxz -Sextreme --build debian/.debhelper/vcftools/dbgsym-root ..
dpkg-deb: building package 'vcftools-dbgsym' in '../vcftools-dbgsym_0.1.14+dfsg-3_armhf.deb'.
dpkg-deb --build debian/vcftools ..
dpkg-deb: building package 'vcftools' in '../vcftools_0.1.14+dfsg-3_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../vcftools_0.1.14+dfsg-3_armhf.changes
dpkg-genchanges: warning: package vcftools-dbgsym listed in files list but not in control info
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build vcftools-0.1.14+dfsg
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 20160712-0311
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
vcftools_0.1.14+dfsg-3_armhf.changes:
-------------------------------------
Format: 1.8
Date: Sun, 03 Jul 2016 13:32:34 +0300
Source: vcftools
Binary: vcftools
Architecture: armhf
Version: 0.1.14+dfsg-3
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Canberk Koç <canberkkoc@gmail.com>
Description:
vcftools - Collection of tools to work with VCF files
Changes:
vcftools (0.1.14+dfsg-3) unstable; urgency=medium
.
* Team upload
.
[ Andreas Tille ]
* Move packaging from SVN to Git
* cme fix dpkg-control
* hardening=+all
* fix some spelling
* add missing manpage
.
[ Canberk Koç ]
* autopkgtest added
* fix for broken tests
Checksums-Sha1:
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8c9727ec5f3a36db71db1a73ec8aa78defcca587 433222 vcftools_0.1.14+dfsg-3_armhf.deb
Checksums-Sha256:
125cf93a263b7ba15f62400b194d0f79b14f6bef82ac4d96b60ed7ef0efae300 3306728 vcftools-dbgsym_0.1.14+dfsg-3_armhf.deb
d55add4f5a378f06e89b026a4369bdefb9053643f65aa987f9e6a53cfff04736 433222 vcftools_0.1.14+dfsg-3_armhf.deb
Files:
805cd80679df39970bd643dc00f199db 3306728 debug extra vcftools-dbgsym_0.1.14+dfsg-3_armhf.deb
c2efaae8b5008bfd690d71b547795294 433222 science optional vcftools_0.1.14+dfsg-3_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
vcftools-dbgsym_0.1.14+dfsg-3_armhf.deb
---------------------------------------
new debian package, version 2.0.
size 3306728 bytes: control archive=487 bytes.
422 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: vcftools-dbgsym
Source: vcftools
Version: 0.1.14+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 3357
Depends: vcftools (= 0.1.14+dfsg-3)
Section: debug
Priority: extra
Homepage: https://vcftools.github.io/
Description: Debug symbols for vcftools
Auto-Built-Package: debug-symbols
Build-Ids: edc8fcc228d47e75697338b655c4ed87a38c3a34
drwxr-xr-x root/root 0 2016-07-12 03:11 ./
drwxr-xr-x root/root 0 2016-07-12 03:11 ./usr/
drwxr-xr-x root/root 0 2016-07-12 03:11 ./usr/lib/
drwxr-xr-x root/root 0 2016-07-12 03:11 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-07-12 03:11 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-07-12 03:11 ./usr/lib/debug/.build-id/ed/
-rw-r--r-- root/root 3426508 2016-07-12 03:11 ./usr/lib/debug/.build-id/ed/c8fcc228d47e75697338b655c4ed87a38c3a34.debug
drwxr-xr-x root/root 0 2016-07-12 03:11 ./usr/share/
drwxr-xr-x root/root 0 2016-07-12 03:11 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-07-12 03:11 ./usr/share/doc/vcftools-dbgsym -> vcftools
vcftools_0.1.14+dfsg-3_armhf.deb
--------------------------------
new debian package, version 2.0.
size 433222 bytes: control archive=3686 bytes.
689 bytes, 15 lines control
8515 bytes, 112 lines md5sums
Package: vcftools
Version: 0.1.14+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1357
Depends: libc6 (>= 2.15), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6), perl
Recommends: tabix
Section: science
Priority: optional
Homepage: https://vcftools.github.io/
Description: Collection of tools to work with VCF files
VCFtools is a program package designed for working with VCF files, such as
those generated by the 1000 Genomes Project. The aim of VCFtools is to
provide methods for working with VCF files: validating, merging, comparing
and calculate some basic population genetic statistics.
drwxr-xr-x root/root 0 2016-07-12 03:11 ./
drwxr-xr-x root/root 0 2016-07-12 03:10 ./usr/
drwxr-xr-x root/root 0 2016-07-12 03:11 ./usr/bin/
-rwxr-xr-x root/root 6104 2016-07-12 03:10 ./usr/bin/fill-aa
-rwxr-xr-x root/root 1261 2016-07-12 03:10 ./usr/bin/fill-an-ac
-rwxr-xr-x root/root 8068 2016-07-12 03:10 ./usr/bin/fill-fs
-rwxr-xr-x root/root 6567 2016-07-12 03:10 ./usr/bin/fill-ref-md5
-rwxr-xr-x root/root 51253 2016-07-12 03:10 ./usr/bin/vcf-annotate
-rwxr-xr-x root/root 57390 2016-07-12 03:10 ./usr/bin/vcf-compare
-rwxr-xr-x root/root 10952 2016-07-12 03:10 ./usr/bin/vcf-concat
-rwxr-xr-x root/root 9226 2016-07-12 03:10 ./usr/bin/vcf-consensus
-rwxr-xr-x root/root 8797 2016-07-12 03:10 ./usr/bin/vcf-contrast
-rwxr-xr-x root/root 6176 2016-07-12 03:10 ./usr/bin/vcf-convert
-rwxr-xr-x root/root 2298 2016-07-12 03:10 ./usr/bin/vcf-fix-newlines
-rwxr-xr-x root/root 10549 2016-07-12 03:10 ./usr/bin/vcf-fix-ploidy
-rwxr-xr-x root/root 4376 2016-07-12 03:10 ./usr/bin/vcf-indel-stats
-rwxr-xr-x root/root 21173 2016-07-12 03:10 ./usr/bin/vcf-isec
-rwxr-xr-x root/root 22988 2016-07-12 03:10 ./usr/bin/vcf-merge
-rwxr-xr-x root/root 23234 2016-07-12 03:10 ./usr/bin/vcf-phased-join
-rwxr-xr-x root/root 15832 2016-07-12 03:10 ./usr/bin/vcf-query
-rwxr-xr-x root/root 2301 2016-07-12 03:10 ./usr/bin/vcf-shuffle-cols
-rwxr-xr-x root/root 3310 2016-07-12 03:10 ./usr/bin/vcf-sort
-rwxr-xr-x root/root 4874 2016-07-12 03:10 ./usr/bin/vcf-stats
-rwxr-xr-x root/root 7706 2016-07-12 03:10 ./usr/bin/vcf-subset
-rwxr-xr-x root/root 2543 2016-07-12 03:10 ./usr/bin/vcf-to-tab
-rwxr-xr-x root/root 1820 2016-07-12 03:10 ./usr/bin/vcf-tstv
-rwxr-xr-x root/root 3353 2016-07-12 03:10 ./usr/bin/vcf-validator
-rwxr-xr-x root/root 759360 2016-07-12 03:11 ./usr/bin/vcftools
drwxr-xr-x root/root 0 2016-07-12 03:10 ./usr/share/
drwxr-xr-x root/root 0 2016-07-12 03:10 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-07-12 03:10 ./usr/share/doc/vcftools/
-rw-r--r-- root/root 1443 2016-07-03 20:35 ./usr/share/doc/vcftools/changelog.Debian.gz
-rw-r--r-- root/root 1961 2015-09-15 18:04 ./usr/share/doc/vcftools/changelog.gz
-rw-r--r-- root/root 1154 2016-07-03 20:35 ./usr/share/doc/vcftools/copyright
drwxr-xr-x root/root 0 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/
drwxr-xr-x root/root 0 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/
-rw-r--r-- root/root 1685 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/annotate-test.vcf
-rw-r--r-- root/root 1376 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/annotate.out
-rw-r--r-- root/root 299 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/annotate.txt
-rw-r--r-- root/root 3107 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/annotate2.out
-rw-r--r-- root/root 1394 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/annotate3.out
-rw-r--r-- root/root 522 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/cmp-test-a-3.3.vcf
-rw-r--r-- root/root 638 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/cmp-test-a.vcf
-rw-r--r-- root/root 520 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/cmp-test-b-3.3.vcf
-rw-r--r-- root/root 636 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/cmp-test-b.vcf
-rw-r--r-- root/root 2633 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/cmp-test.out
-rw-r--r-- root/root 1180 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/concat-a.vcf
-rw-r--r-- root/root 674 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/concat-b.vcf
-rw-r--r-- root/root 972 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/concat-c.vcf
-rw-r--r-- root/root 2074 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/concat.out
-rw-r--r-- root/root 1038 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/consensus.fa
-rw-r--r-- root/root 1037 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/consensus.out
-rw-r--r-- root/root 1037 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/consensus.out2
-rw-r--r-- root/root 275 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/consensus.vcf
-rw-r--r-- root/root 2312 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/contrast.out.gz
-rw-r--r-- root/root 8723 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/contrast.vcf.gz
-rw-r--r-- root/root 1524 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/fill-an-ac.out
-rw-r--r-- root/root 1800 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/filters.txt.gz
-rw-r--r-- root/root 1924 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.out
-rw-r--r-- root/root 42 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.samples
-rw-r--r-- root/root 223 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.txt
-rw-r--r-- root/root 3335 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/fix-ploidy.vcf.gz
-rw-r--r-- root/root 564 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/floats.vcf
-rw-r--r-- root/root 48 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/indel-stats.out
-rw-r--r-- root/root 24 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/indel-stats.tab
-rw-r--r-- root/root 523 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/indel-stats.vcf
-rw-r--r-- root/root 2086 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/invalid-4.0.vcf
-rw-r--r-- root/root 1120 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/isec-n2-test.vcf.out
-rw-r--r-- root/root 965 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/merge-test-a.vcf
-rw-r--r-- root/root 1020 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/merge-test-b.vcf
-rw-r--r-- root/root 798 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/merge-test-c.vcf
-rw-r--r-- root/root 2240 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/merge-test.vcf.out
-rw-r--r-- root/root 230 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/parse-test.vcf
-rw-r--r-- root/root 1439 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/perl-api-1.pl
-rw-r--r-- root/root 255 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/query-test.out
-rw-r--r-- root/root 638 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/shuffle-test.vcf
-rw-r--r-- root/root 522 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/subset.SNPs.out
-rw-r--r-- root/root 931 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/subset.indels.out
-rw-r--r-- root/root 1229 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/subset.vcf
-rw-r--r-- root/root 1612 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/valid-3.3.vcf
-rw-r--r-- root/root 2182 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf
-rw-r--r-- root/root 465 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/valid-4.0.vcf.stats.gz
-rw-r--r-- root/root 2999 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testdata/valid-4.1.vcf
drwxr-xr-x root/root 0 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testsuite/
-rw-r--r-- root/root 2276 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testsuite/FaSlice.pm.gz
-rw-r--r-- root/root 23242 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testsuite/Vcf.pm.gz
-rw-r--r-- root/root 4404 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testsuite/VcfStats.pm.gz
-rw-r--r-- root/root 2204 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testsuite/fill-aa.gz
-rw-r--r-- root/root 1261 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testsuite/fill-an-ac
-rw-r--r-- root/root 2672 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testsuite/fill-fs.gz
-rw-r--r-- root/root 2351 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testsuite/fill-ref-md5.gz
-rw-r--r-- root/root 3617 2016-07-12 03:10 ./usr/share/doc/vcftools/examples/testsuite/test.t.gz
drwxr-xr-x root/root 0 2016-07-12 03:10 ./usr/share/man/
drwxr-xr-x root/root 0 2016-07-12 03:10 ./usr/share/man/man1/
-rw-r--r-- root/root 272 2016-07-12 03:10 ./usr/share/man/man1/fill-aa.1.gz
-rw-r--r-- root/root 241 2016-07-12 03:10 ./usr/share/man/man1/fill-an-ac.1.gz
-rw-r--r-- root/root 664 2016-07-12 03:10 ./usr/share/man/man1/fill-fs.1.gz
-rw-r--r-- root/root 654 2016-07-12 03:10 ./usr/share/man/man1/fill-ref-md5.1.gz
-rw-r--r-- root/root 280 2016-07-12 03:10 ./usr/share/man/man1/fill-rsIDs.1.gz
-rw-r--r-- root/root 1281 2016-07-12 03:10 ./usr/share/man/man1/vcf-annotate.1.gz
-rw-r--r-- root/root 852 2016-07-12 03:10 ./usr/share/man/man1/vcf-compare.1.gz
-rw-r--r-- root/root 518 2016-07-12 03:10 ./usr/share/man/man1/vcf-concat.1.gz
-rw-r--r-- root/root 277 2016-07-12 03:10 ./usr/share/man/man1/vcf-consensus.1.gz
-rw-r--r-- root/root 724 2016-07-12 03:10 ./usr/share/man/man1/vcf-contrast.1.gz
-rw-r--r-- root/root 389 2016-07-12 03:10 ./usr/share/man/man1/vcf-convert.1.gz
-rw-r--r-- root/root 429 2016-07-12 03:10 ./usr/share/man/man1/vcf-fix-newlines.1.gz
-rw-r--r-- root/root 651 2016-07-12 03:10 ./usr/share/man/man1/vcf-fix-ploidy.1.gz
-rw-r--r-- root/root 366 2016-07-12 03:10 ./usr/share/man/man1/vcf-indel-stats.1.gz
-rw-r--r-- root/root 956 2016-07-12 03:10 ./usr/share/man/man1/vcf-isec.1.gz
-rw-r--r-- root/root 599 2016-07-12 03:10 ./usr/share/man/man1/vcf-merge.1.gz
-rw-r--r-- root/root 551 2016-07-12 03:10 ./usr/share/man/man1/vcf-phased-join.1.gz
-rw-r--r-- root/root 500 2016-07-12 03:10 ./usr/share/man/man1/vcf-query.1.gz
-rw-r--r-- root/root 343 2016-07-12 03:10 ./usr/share/man/man1/vcf-shuffle-cols.1.gz
-rw-r--r-- root/root 254 2016-07-12 03:10 ./usr/share/man/man1/vcf-sort.1.gz
-rw-r--r-- root/root 685 2016-07-12 03:10 ./usr/share/man/man1/vcf-stats.1.gz
-rw-r--r-- root/root 558 2016-07-12 03:10 ./usr/share/man/man1/vcf-subset.1.gz
-rw-r--r-- root/root 280 2016-07-12 03:10 ./usr/share/man/man1/vcf-to-tab.1.gz
-rw-r--r-- root/root 227 2016-07-12 03:10 ./usr/share/man/man1/vcf-tstv.1.gz
-rw-r--r-- root/root 307 2016-07-12 03:10 ./usr/share/man/man1/vcf-validator.1.gz
-rw-r--r-- root/root 8564 2016-07-12 03:10 ./usr/share/man/man1/vcftools.1.gz
drwxr-xr-x root/root 0 2016-07-12 03:10 ./usr/share/perl5/
-rw-r--r-- root/root 6731 2016-07-12 03:10 ./usr/share/perl5/FaSlice.pm
-rw-r--r-- root/root 103499 2016-07-12 03:10 ./usr/share/perl5/Vcf.pm
-rw-r--r-- root/root 18147 2016-07-12 03:10 ./usr/share/perl5/VcfStats.pm
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 43168
Build-Time: 746
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 205
Job: vcftools_0.1.14+dfsg-3
Machine Architecture: armhf
Package: vcftools
Package-Time: 1053
Source-Version: 0.1.14+dfsg-3
Space: 43168
Status: successful
Version: 0.1.14+dfsg-3
--------------------------------------------------------------------------------
Finished at 20160712-0311
Build needed 00:17:33, 43168k disc space