vcftools →
0.1.14+dfsg-1 →
armhf → 2015-11-22 05:24:50
sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on bm-wb-01
╔══════════════════════════════════════════════════════════════════════════════╗
║ vcftools 0.1.14+dfsg-1 (armhf) 22 Nov 2015 05:07 ║
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Package: vcftools
Version: 0.1.14+dfsg-1
Source Version: 0.1.14+dfsg-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/vcftools-pzzJ4q/vcftools-0.1.14+dfsg' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/vcftools-pzzJ4q' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-3bbf41b8-9b36-4213-90e5-83226aef4922' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8476 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [10.4 MB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
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│ Fetch source files │
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Check APT
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NOTICE: 'vcftools' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/vcftools/trunk
Need to get 207 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main vcftools 0.1.14+dfsg-1 (dsc) [2058 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main vcftools 0.1.14+dfsg-1 (tar) [190 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main vcftools 0.1.14+dfsg-1 (diff) [15.3 kB]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/«BUILDDIR»/resolver-rAJGkw/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
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Building dependency tree...
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The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 4 not upgraded.
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Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, pkg-config, zlib1g-dev
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), dh-autoreconf, pkg-config, zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-vcftools-dummy' in '/«BUILDDIR»/resolver-TeP4om/apt_archive/sbuild-build-depends-vcftools-dummy.deb'.
OK
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install vcftools build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libcroco3 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4
man-db pkg-config po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc automaken gfortran fortran95-compiler gcj-jdk less www-browser
libmail-box-perl
Recommended packages:
curl wget lynx-cur libglib2.0-data shared-mime-info xdg-user-dirs
libltdl-dev xml-core libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libcroco3 libffi6
libfile-stripnondeterminism-perl libglib2.0-0 libicu55 libmagic1
libpipeline1 libsigsegv2 libtimedate-perl libtool libunistring0 libxml2 m4
man-db pkg-config po-debconf sbuild-build-depends-vcftools-dummy zlib1g-dev
0 upgraded, 32 newly installed, 0 to remove and 4 not upgraded.
Need to get 18.7 MB/18.7 MB of archives.
After this operation, 63.5 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-3 [1084 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.1-1 [23.9 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.5-1 [975 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.2.1-3 [18.5 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libsigsegv2 armhf 2.10-4 [28.2 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.25-2 [250 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.25-2 [61.2 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.6-1 [119 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main libicu55 armhf 55.1-6 [7379 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.2+zdfsg1-4 [797 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main m4 armhf 1.4.17-4 [238 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main autoconf all 2.69-9 [338 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main autotools-dev all 20150820.1 [71.7 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main automake all 1:1.15-3 [735 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main autopoint all 0.19.6-1 [429 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libglib2.0-0 armhf 2.46.2-1 [2482 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libcroco3 armhf 0.6.9-1 [129 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.6-1 [1393 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libarchive-zip-perl all 1.53-1 [97.3 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libfile-stripnondeterminism-perl all 0.014-1 [10.6 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main libtimedate-perl all 2.3000-2 [42.2 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main dh-strip-nondeterminism all 0.014-1 [7472 B]
Get:27 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20151005 [817 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libtool all 2.4.2-1.11 [190 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main dh-autoreconf all 10 [15.2 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main pkg-config armhf 0.29-2 [58.8 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
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Processing triggers for libc-bin (2.19-22) ...
Setting up groff-base (1.22.3-3) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpipeline1:armhf (1.4.1-1) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libffi6:armhf (3.2.1-3) ...
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Setting up libunistring0:armhf (0.9.3-5.2) ...
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Setting up libxml2:armhf (2.9.2+zdfsg1-4) ...
Setting up m4 (1.4.17-4) ...
Setting up autoconf (2.69-9) ...
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Setting up automake (1:1.15-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up autopoint (0.19.6-1) ...
Setting up libglib2.0-0:armhf (2.46.2-1) ...
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Setting up gettext (0.19.6-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up po-debconf (1.0.18) ...
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Setting up debhelper (9.20151005) ...
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25.1-7 dpkg-dev_1.18.3 g++-5_5.2.1-23+rpi1 gcc-5_5.2.1-23+rpi1 libc6-dev_2.19-22 libstdc++-5-dev_5.2.1-23+rpi1 libstdc++6_5.2.1-23+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.113+nmu3 apt_1.0.10.2 autoconf_2.69-9 automake_1:1.15-3 autopoint_0.19.6-1 autotools-dev_20150820.1 base-files_9.4+rpi1 base-passwd_3.5.38 bash_4.3-14 binutils_2.25.1-7 bsdmainutils_9.0.6 bsdutils_1:2.27.1-1 build-essential_11.7 bzip2_1.0.6-8 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:5.2.1-4+rpi2 cpp-5_5.2.1-23+rpi1 dash_0.5.7-4 debconf_1.5.58 debconf-i18n_1.5.58 debfoster_2.7-2 debhelper_9.20151005 debianutils_4.5.1 dh-autoreconf_10 dh-strip-nondeterminism_0.014-1 diffutils_1:3.3-2 dmsetup_2:1.02.110-1+rpi1 dpkg_1.18.3 dpkg-dev_1.18.3 e2fslibs_1.42.13-1 e2fsprogs_1.42.13-1 fakeroot_1.20.2-1 file_1:5.25-2 findutils_4.4.2-10 g++_4:5.2.1-4+rpi2 g++-5_5.2.1-23+rpi1 gcc_4:5.2.1-4+rpi2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-1 gcc-4.9-base_4.9.3-5 gcc-5_5.2.1-23+rpi1 gcc-5-base_5.2.1-23+rpi1 gettext_0.19.6-1 gettext-base_0.19.6-1 gnupg_1.4.19-6 gpgv_1.4.19-6 grep_2.21-2 groff-base_1.22.3-3 gzip_1.6-4 hostname_3.16 init_1.24 init-system-helpers_1.24 initramfs-tools_0.120 initscripts_2.88dsf-59.2 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-2+rpi1 kmod_21-1 libacl1_2.2.52-2 libapparmor1_2.10-2+b2 libapt-pkg4.16_1.0.10.2 libarchive-zip-perl_1.53-1 libasan2_5.2.1-23+rpi1 libatomic1_5.2.1-23+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4.4-4 libaudit1_1:2.4.4-4 libblkid1_2.27.1-1 libbz2-1.0_1.0.6-8 libc-bin_2.19-22 libc-dev-bin_2.19-22 libc6_2.19-22 libc6-dev_2.19-22 libcap2_1:2.24-12 libcap2-bin_1:2.24-12 libcc1-0_5.2.1-23+rpi1 libcomerr2_1.42.13-1 libcroco3_0.6.9-1 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-11 libdbus-1-3_1.10.2-1 libdebconfclient0_0.195 libdevmapper1.02.1_2:1.02.110-1+rpi1 libdpkg-perl_1.18.3 libdrm2_2.4.65-3 libfakeroot_1.20.2-1 libfdisk1_2.27.1-1 libffi6_3.2.1-3 libfile-stripnondeterminism-perl_0.014-1 libgc1c2_1:7.4.2-7 libgcc-5-dev_5.2.1-23+rpi1 libgcc1_1:5.2.1-23+rpi1 libgcrypt20_1.6.4-3 libgdbm3_1.8.3-13.1 libglib2.0-0_2.46.2-1 libgmp10_2:6.0.0+dfsg-7+rpi1 libgomp1_5.2.1-23+rpi1 libgpg-error0_1.20-1 libicu55_55.1-6 libisl13_0.14-2 libklibc_2.0.4-2+rpi1 libkmod2_21-1 liblocale-gettext-perl_1.07-1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.25-2 libmount1_2.27.1-1 libmpc3_1.0.3-1 libmpfr4_3.1.3-1 libncurses5_6.0+20151024-2 libncursesw5_6.0+20151024-2 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpcre3_2:8.35-7.4 libpipeline1_1.4.1-1 libpng12-0_1.2.50-2+b2 libprocps4_2:3.3.10-2 libreadline6_6.3-8+b3 libseccomp2_2.2.3-2 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libsigsegv2_2.10-4 libsmartcols1_2.27.1-1 libss2_1.42.13-1 libstdc++-5-dev_5.2.1-23+rpi1 libstdc++6_5.2.1-23+rpi1 libsystemd0_227-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20151024-2 libtool_2.4.2-1.11 libubsan0_5.2.1-23+rpi1 libudev1_227-2 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-27 libustr-1.0-1_1.0.4-5 libuuid1_2.27.1-1 libxml2_2.9.2+zdfsg1-4 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 m4_1.4.17-4 make_4.0-8.2 makedev_2.3.1-93 man-db_2.7.5-1 mawk_1.3.3-17 mount_2.27.1-1 multiarch-support_2.19-22 nano_2.4.2-1 ncurses-base_6.0+20151024-2 ncurses-bin_6.0+20151024-2 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-6 perl-base_5.20.2-6 perl-modules_5.20.2-6 pkg-config_0.29-2 po-debconf_1.0.18 procps_2:3.3.10-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-vcftools-dummy_0.invalid.0 sed_4.2.2-6.1 sensible-utils_0.0.9 startpar_0.59-3 systemd_227-2 systemd-sysv_227-2 sysv-rc_2.88dsf-59.2 sysvinit-utils_2.88dsf-59.2 tar_1.28-2.1 tzdata_2015g-1 udev_227-2 util-linux_2.27.1-1 xz-utils_5.1.1alpha+20120614-2.1 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon Nov 16 14:28:11 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./vcftools_0.1.14+dfsg-1.dsc
dpkg-source: info: extracting vcftools in vcftools-0.1.14+dfsg
dpkg-source: info: unpacking vcftools_0.1.14+dfsg.orig.tar.xz
dpkg-source: info: unpacking vcftools_0.1.14+dfsg-1.debian.tar.xz
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-3bbf41b8-9b36-4213-90e5-83226aef4922
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package vcftools
dpkg-buildpackage: source version 0.1.14+dfsg-1
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build vcftools-0.1.14+dfsg
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
dh clean --with autoreconf
dh_testdir
dh_auto_clean
dh_autoreconf_clean
dh_clean
rm -f debian/vcftools.substvars
rm -f debian/vcftools.*.debhelper
rm -rf debian/vcftools/
rm -rf debian/.debhelper/
rm -f debian/*.debhelper.log
rm -f debian/files
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
rm -f *-stamp
debian/rules build-arch
dh build-arch --with autoreconf
dh_testdir -a
dh_autoreconf -a
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.before
autoreconf -f -i
configure.ac:16: installing './compile'
configure.ac:12: installing './install-sh'
configure.ac:12: installing './missing'
src/cpp/Makefile.am: installing './depcomp'
find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} \; > debian/autoreconf.after
dh_auto_configure -a
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking
configure: WARNING: unrecognized options: --disable-maintainer-mode
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
checking for a thread-safe mkdir -p... /bin/mkdir -p
checking for gawk... no
checking for mawk... mawk
checking whether make sets $(MAKE)... yes
checking whether make supports nested variables... yes
checking for g++... g++
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ accepts -g... yes
checking for style of include used by make... GNU
checking dependency style of g++... none
checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking whether gcc understands -c and -o together... yes
checking dependency style of gcc... none
checking how to run the C preprocessor... gcc -E
checking for perl... /usr/bin/perl
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for ZLIB... yes
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking arpa/inet.h usability... yes
checking arpa/inet.h presence... yes
checking for arpa/inet.h... yes
checking fcntl.h usability... yes
checking fcntl.h presence... yes
checking for fcntl.h... yes
checking limits.h usability... yes
checking limits.h presence... yes
checking for limits.h... yes
checking netdb.h usability... yes
checking netdb.h presence... yes
checking for netdb.h... yes
checking for stdint.h... (cached) yes
checking for stdlib.h... (cached) yes
checking for string.h... (cached) yes
checking sys/socket.h usability... yes
checking sys/socket.h presence... yes
checking for sys/socket.h... yes
checking for unistd.h... (cached) yes
checking for stdbool.h that conforms to C99... yes
checking for _Bool... yes
checking for inline... inline
checking for int16_t... yes
checking for int32_t... yes
checking for int64_t... yes
checking for int8_t... yes
checking for off_t... yes
checking for size_t... yes
checking for ssize_t... yes
checking for uint16_t... yes
checking for uint32_t... yes
checking for uint8_t... yes
checking for special C compiler options needed for large files... no
checking for _FILE_OFFSET_BITS value needed for large files... 64
checking for error_at_line... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible malloc... yes
checking for stdlib.h... (cached) yes
checking for GNU libc compatible realloc... yes
checking for gethostbyaddr... yes
checking for gethostbyname... yes
checking for memset... yes
checking for pow... no
checking for select... yes
checking for socket... yes
checking for sqrt... no
checking for strchr... yes
checking for strdup... yes
checking for strerror... yes
checking for strstr... yes
checking for strtol... yes
checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating src/Makefile
config.status: creating src/cpp/Makefile
config.status: creating src/perl/Makefile
config.status: creating config.h
config.status: executing depfiles commands
configure: WARNING: unrecognized options: --disable-maintainer-mode
dh_auto_build -a
make -j1
make[1]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
make all-recursive
make[2]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
Making all in src
make[3]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
Making all in cpp
make[4]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/cpp'
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_entry.o `test -f 'bcf_entry.cpp' || echo './'`bcf_entry.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_entry_setters.o `test -f 'bcf_entry_setters.cpp' || echo './'`bcf_entry_setters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bcf_file.o `test -f 'bcf_file.cpp' || echo './'`bcf_file.cpp
gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-bgzf.o `test -f 'bgzf.c' || echo './'`bgzf.c
bgzf.c: In function 'bgzf_check_EOF':
bgzf.c:60:34: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
#define _bgzf_read(fp, buf, len) fread((buf), 1, (len), (FILE*)(fp))
^
bgzf.c:622:2: note: in expansion of macro '_bgzf_read'
_bgzf_read(fp->fp, buf, 28);
^
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-dgeev.o `test -f 'dgeev.cpp' || echo './'`dgeev.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry.o `test -f 'entry.cpp' || echo './'`entry.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_filters.o `test -f 'entry_filters.cpp' || echo './'`entry_filters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_getters.o `test -f 'entry_getters.cpp' || echo './'`entry_getters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-entry_setters.o `test -f 'entry_setters.cpp' || echo './'`entry_setters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-gamma.o `test -f 'gamma.cpp' || echo './'`gamma.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-header.o `test -f 'header.cpp' || echo './'`header.cpp
gcc -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-knetfile.o `test -f 'knetfile.c' || echo './'`knetfile.c
In file included from knetfile.c:46:0:
knetfile.c: In function 'kftp_send_cmd':
knetfile.h:9:32: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
#define netwrite(fd, ptr, len) write(fd, ptr, len)
^
knetfile.c:236:2: note: in expansion of macro 'netwrite'
netwrite(ftp->ctrl_fd, cmd, strlen(cmd));
^
knetfile.c: In function 'khttp_connect_file':
knetfile.h:9:32: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
#define netwrite(fd, ptr, len) write(fd, ptr, len)
^
knetfile.c:415:2: note: in expansion of macro 'netwrite'
netwrite(fp->fd, buf, l);
^
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-output_log.o `test -f 'output_log.cpp' || echo './'`output_log.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-parameters.o `test -f 'parameters.cpp' || echo './'`parameters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file.o `test -f 'variant_file.cpp' || echo './'`variant_file.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_diff.o `test -f 'variant_file_diff.cpp' || echo './'`variant_file_diff.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_filters.o `test -f 'variant_file_filters.cpp' || echo './'`variant_file_filters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_format_convert.o `test -f 'variant_file_format_convert.cpp' || echo './'`variant_file_format_convert.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-variant_file_output.o `test -f 'variant_file_output.cpp' || echo './'`variant_file_output.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_entry.o `test -f 'vcf_entry.cpp' || echo './'`vcf_entry.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_entry_setters.o `test -f 'vcf_entry_setters.cpp' || echo './'`vcf_entry_setters.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcf_file.o `test -f 'vcf_file.cpp' || echo './'`vcf_file.cpp
g++ -DHAVE_CONFIG_H -I. -I../.. -D_FORTIFY_SOURCE=2 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -c -o vcftools-vcftools.o `test -f 'vcftools.cpp' || echo './'`vcftools.cpp
g++ -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -o vcftools vcftools-bcf_entry.o vcftools-bcf_entry_setters.o vcftools-bcf_file.o vcftools-bgzf.o vcftools-dgeev.o vcftools-entry.o vcftools-entry_filters.o vcftools-entry_getters.o vcftools-entry_setters.o vcftools-gamma.o vcftools-header.o vcftools-knetfile.o vcftools-output_log.o vcftools-parameters.o vcftools-variant_file.o vcftools-variant_file_diff.o vcftools-variant_file_filters.o vcftools-variant_file_format_convert.o vcftools-variant_file_output.o vcftools-vcf_entry.o vcftools-vcf_entry_setters.o vcftools-vcf_file.o vcftools-vcftools.o -lz
make[4]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/cpp'
Making all in perl
make[4]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/perl'
make[4]: Nothing to be done for 'all'.
make[4]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/perl'
make[4]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
make[4]: Nothing to be done for 'all-am'.
make[4]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
make[3]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
make[3]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
make[3]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
make[2]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
make[1]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
dh_auto_test -a
make -j1 check
make[1]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
Making check in src
make[2]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
Making check in cpp
make[3]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/cpp'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/cpp'
Making check in perl
make[3]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/perl'
make[3]: Nothing to be done for 'check'.
make[3]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/perl'
make[3]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
make[3]: Nothing to be done for 'check-am'.
make[3]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
make[2]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
make[2]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
make[2]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
make[1]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
fakeroot debian/rules binary-arch
dh binary-arch --with autoreconf
dh_testroot -a
dh_prep -a
rm -f debian/vcftools.substvars
rm -f debian/vcftools.*.debhelper
rm -rf debian/vcftools/
dh_auto_install -a
install -d debian/vcftools
make -j1 install DESTDIR=/«BUILDDIR»/vcftools-0.1.14\+dfsg/debian/vcftools AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
Making install in src
make[2]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
Making install in cpp
make[3]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/cpp'
make[4]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/cpp'
/bin/mkdir -p '/«BUILDDIR»/vcftools-0.1.14+dfsg/debian/vcftools/usr/bin'
/usr/bin/install -c vcftools '/«BUILDDIR»/vcftools-0.1.14+dfsg/debian/vcftools/usr/bin'
/bin/mkdir -p '/«BUILDDIR»/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/man/man1'
/usr/bin/install -c -m 644 vcftools.1 '/«BUILDDIR»/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/man/man1'
make[4]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/cpp'
make[3]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/cpp'
Making install in perl
make[3]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/perl'
make[4]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/perl'
/bin/mkdir -p '/«BUILDDIR»/vcftools-0.1.14+dfsg/debian/vcftools/usr/bin'
/usr/bin/install -c fill-aa fill-an-ac fill-fs fill-ref-md5 vcf-annotate vcf-compare vcf-concat vcf-consensus vcf-contrast vcf-convert vcf-fix-newlines vcf-fix-ploidy vcf-indel-stats vcf-isec vcf-merge vcf-phased-join vcf-query vcf-shuffle-cols vcf-sort vcf-stats vcf-subset vcf-to-tab vcf-tstv vcf-validator '/«BUILDDIR»/vcftools-0.1.14+dfsg/debian/vcftools/usr/bin'
/bin/mkdir -p '/«BUILDDIR»/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/perl/5.20.2'
/usr/bin/install -c -m 644 FaSlice.pm Vcf.pm VcfStats.pm '/«BUILDDIR»/vcftools-0.1.14+dfsg/debian/vcftools/usr/share/perl/5.20.2'
make[4]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/perl'
make[3]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src/perl'
make[3]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
make[4]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
make[4]: Nothing to be done for 'install-exec-am'.
make[4]: Nothing to be done for 'install-data-am'.
make[4]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
make[3]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
make[2]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg/src'
make[2]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
make[3]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
make[3]: Nothing to be done for 'install-exec-am'.
make[3]: Nothing to be done for 'install-data-am'.
make[3]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
make[2]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
make[1]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
debian/rules override_dh_install
make[1]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
dh_install
mv debian/vcftools/usr/share/perl/5.20.2 debian/vcftools/usr/share/perl5
rmdir debian/vcftools/usr/share/perl
make[1]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
dh_installdocs -a
install -d debian/vcftools/usr/share/doc/vcftools
install -p -m0644 debian/copyright debian/vcftools/usr/share/doc/vcftools/copyright
debian/rules override_dh_installchangelogs
make[1]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
dh_installchangelogs src/perl/ChangeLog
install -p -m0644 debian/changelog debian/vcftools/usr/share/doc/vcftools/changelog.Debian
install -p -m0644 src/perl/ChangeLog debian/vcftools/usr/share/doc/vcftools/changelog
make[1]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
dh_installexamples -a
install -d debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/annotate-test.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/annotate.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/annotate.txt debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/annotate2.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/annotate3.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/cmp-test-a-3.3.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/cmp-test-a.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/cmp-test-b-3.3.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/cmp-test-b.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/cmp-test.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/concat-a.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/concat-b.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/concat-c.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/concat.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/consensus.fa debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/consensus.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/consensus.out2 debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/consensus.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/contrast.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/contrast.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/fill-an-ac.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/filters.txt debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/fix-ploidy.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/fix-ploidy.samples debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/fix-ploidy.txt debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/fix-ploidy.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/floats.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/indel-stats.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/indel-stats.tab debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/indel-stats.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/invalid-4.0.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/isec-n2-test.vcf.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/merge-test-a.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/merge-test-b.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/merge-test-c.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/merge-test.vcf.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/parse-test.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/perl-api-1.pl debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/query-test.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/shuffle-test.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/subset.indels.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/subset.SNPs.out debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/subset.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/valid-3.3.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/valid-4.0.vcf debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/valid-4.0.vcf.stats debian/vcftools/usr/share/doc/vcftools/examples
cp --reflink=auto -a examples/valid-4.1.vcf debian/vcftools/usr/share/doc/vcftools/examples
dh_installman -a
install -p -m0644 debian/mans/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-aa.1
install -p -m0644 debian/mans/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1
install -p -m0644 debian/mans/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-fs.1
install -p -m0644 debian/mans/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1
install -p -m0644 debian/mans/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1
install -p -m0644 debian/mans/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1
install -p -m0644 debian/mans/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-compare.1
install -p -m0644 debian/mans/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-concat.1
install -p -m0644 debian/mans/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1
install -p -m0644 debian/mans/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1
install -p -m0644 debian/mans/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-convert.1
install -p -m0644 debian/mans/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1
install -p -m0644 debian/mans/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1
install -p -m0644 debian/mans/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-isec.1
install -p -m0644 debian/mans/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-merge.1
install -p -m0644 debian/mans/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1
install -p -m0644 debian/mans/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-query.1
install -p -m0644 debian/mans/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1
install -p -m0644 debian/mans/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-sort.1
install -p -m0644 debian/mans/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-stats.1
install -p -m0644 debian/mans/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-subset.1
install -p -m0644 debian/mans/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1
install -p -m0644 debian/mans/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1
install -p -m0644 debian/mans/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcf-validator.1
install -p -m0644 debian/mans/vcftools.1 debian/vcftools/usr/share/man/man1/vcftools.1
man --recode UTF-8 ./fill\-aa\.1 > fill\-aa\.1\.new
chmod 644 fill-aa.1.new
mv -f fill-aa.1.new fill-aa.1
man --recode UTF-8 ./fill\-an\-ac\.1 > fill\-an\-ac\.1\.new
chmod 644 fill-an-ac.1.new
mv -f fill-an-ac.1.new fill-an-ac.1
man --recode UTF-8 ./fill\-fs\.1 > fill\-fs\.1\.new
chmod 644 fill-fs.1.new
mv -f fill-fs.1.new fill-fs.1
man --recode UTF-8 ./fill\-ref\-md5\.1 > fill\-ref\-md5\.1\.new
chmod 644 fill-ref-md5.1.new
mv -f fill-ref-md5.1.new fill-ref-md5.1
man --recode UTF-8 ./fill\-rsIDs\.1 > fill\-rsIDs\.1\.new
chmod 644 fill-rsIDs.1.new
mv -f fill-rsIDs.1.new fill-rsIDs.1
man --recode UTF-8 ./vcf\-annotate\.1 > vcf\-annotate\.1\.new
chmod 644 vcf-annotate.1.new
mv -f vcf-annotate.1.new vcf-annotate.1
man --recode UTF-8 ./vcf\-compare\.1 > vcf\-compare\.1\.new
chmod 644 vcf-compare.1.new
mv -f vcf-compare.1.new vcf-compare.1
man --recode UTF-8 ./vcf\-concat\.1 > vcf\-concat\.1\.new
chmod 644 vcf-concat.1.new
mv -f vcf-concat.1.new vcf-concat.1
man --recode UTF-8 ./vcf\-consensus\.1 > vcf\-consensus\.1\.new
chmod 644 vcf-consensus.1.new
mv -f vcf-consensus.1.new vcf-consensus.1
man --recode UTF-8 ./vcf\-contrast\.1 > vcf\-contrast\.1\.new
chmod 644 vcf-contrast.1.new
mv -f vcf-contrast.1.new vcf-contrast.1
man --recode UTF-8 ./vcf\-convert\.1 > vcf\-convert\.1\.new
chmod 644 vcf-convert.1.new
mv -f vcf-convert.1.new vcf-convert.1
man --recode UTF-8 ./vcf\-fix\-ploidy\.1 > vcf\-fix\-ploidy\.1\.new
chmod 644 vcf-fix-ploidy.1.new
mv -f vcf-fix-ploidy.1.new vcf-fix-ploidy.1
man --recode UTF-8 ./vcf\-indel\-stats\.1 > vcf\-indel\-stats\.1\.new
chmod 644 vcf-indel-stats.1.new
mv -f vcf-indel-stats.1.new vcf-indel-stats.1
man --recode UTF-8 ./vcf\-isec\.1 > vcf\-isec\.1\.new
chmod 644 vcf-isec.1.new
mv -f vcf-isec.1.new vcf-isec.1
man --recode UTF-8 ./vcf\-merge\.1 > vcf\-merge\.1\.new
chmod 644 vcf-merge.1.new
mv -f vcf-merge.1.new vcf-merge.1
man --recode UTF-8 ./vcf\-phased\-join\.1 > vcf\-phased\-join\.1\.new
chmod 644 vcf-phased-join.1.new
mv -f vcf-phased-join.1.new vcf-phased-join.1
man --recode UTF-8 ./vcf\-query\.1 > vcf\-query\.1\.new
chmod 644 vcf-query.1.new
mv -f vcf-query.1.new vcf-query.1
man --recode UTF-8 ./vcf\-shuffle\-cols\.1 > vcf\-shuffle\-cols\.1\.new
chmod 644 vcf-shuffle-cols.1.new
mv -f vcf-shuffle-cols.1.new vcf-shuffle-cols.1
man --recode UTF-8 ./vcf\-sort\.1 > vcf\-sort\.1\.new
chmod 644 vcf-sort.1.new
mv -f vcf-sort.1.new vcf-sort.1
man --recode UTF-8 ./vcf\-stats\.1 > vcf\-stats\.1\.new
chmod 644 vcf-stats.1.new
mv -f vcf-stats.1.new vcf-stats.1
man --recode UTF-8 ./vcf\-subset\.1 > vcf\-subset\.1\.new
chmod 644 vcf-subset.1.new
mv -f vcf-subset.1.new vcf-subset.1
man --recode UTF-8 ./vcf\-to\-tab\.1 > vcf\-to\-tab\.1\.new
chmod 644 vcf-to-tab.1.new
mv -f vcf-to-tab.1.new vcf-to-tab.1
man --recode UTF-8 ./vcf\-tstv\.1 > vcf\-tstv\.1\.new
chmod 644 vcf-tstv.1.new
mv -f vcf-tstv.1.new vcf-tstv.1
man --recode UTF-8 ./vcf\-validator\.1 > vcf\-validator\.1\.new
chmod 644 vcf-validator.1.new
mv -f vcf-validator.1.new vcf-validator.1
man --recode UTF-8 ./vcftools\.1 > vcftools\.1\.new
chmod 644 vcftools.1.new
mv -f vcftools.1.new vcftools.1
dh_perl -a
(grep -s -v perl:Depends debian/vcftools.substvars; echo perl:Depends=perl) > debian/vcftools.substvars.new
mv debian/vcftools.substvars.new debian/vcftools.substvars
rmdir --ignore-fail-on-non-empty --parents debian/vcftools/usr/share/perl5
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
cd debian/vcftools
chmod a-x usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/examples/contrast.out usr/share/doc/vcftools/examples/contrast.vcf usr/share/doc/vcftools/examples/filters.txt usr/share/doc/vcftools/examples/fix-ploidy.vcf usr/share/doc/vcftools/examples/valid-4.0.vcf.stats usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1
gzip -9nf usr/share/doc/vcftools/changelog usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/examples/contrast.out usr/share/doc/vcftools/examples/contrast.vcf usr/share/doc/vcftools/examples/filters.txt usr/share/doc/vcftools/examples/fix-ploidy.vcf usr/share/doc/vcftools/examples/valid-4.0.vcf.stats usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-tstv.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/vcftools.1
cd '/«BUILDDIR»/vcftools-0.1.14+dfsg'
debian/rules override_dh_fixperms
make[1]: Entering directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
dh_fixperms
find debian/vcftools -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
find debian/vcftools ! -type l -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/vcftools/usr/share/doc -type f ! -regex 'debian/vcftools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/share/doc -type d -print0 2>/dev/null | xargs -0r chmod 0755
find debian/vcftools/usr/share/man debian/vcftools/usr/man/ debian/vcftools/usr/X11*/man/ -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/include -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/share/applications -type f -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/lib/arm-linux-gnueabihf/perl5/5.20 debian/vcftools/usr/share/perl5 -type f -perm -5 -name '*.pm' -print0 2>/dev/null | xargs -0r chmod a-X
find debian/vcftools -perm -5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' \) -print0 2>/dev/null | xargs -0r chmod 0644
find debian/vcftools/usr/bin -type f -print0 2>/dev/null | xargs -0r chmod a+x
find debian/vcftools/usr/lib -type f -name '*.ali' -print0 2>/dev/null | xargs -0r chmod uga-w
chmod -x debian/vcftools/usr/share/doc/vcftools/examples/*
make[1]: Leaving directory '/«BUILDDIR»/vcftools-0.1.14+dfsg'
dh_strip -a
strip --remove-section=.comment --remove-section=.note debian/vcftools/usr/bin/vcftools
dh_makeshlibs -a
rm -f debian/vcftools/DEBIAN/shlibs
dh_shlibdeps -a
install -d debian/vcftools/DEBIAN
dpkg-shlibdeps -Tdebian/vcftools.substvars debian/vcftools/usr/bin/vcftools
dpkg-shlibdeps: warning: debian/vcftools/usr/bin/vcftools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dh_installdeb -a
dh_gencontrol -a
echo misc:Depends= >> debian/vcftools.substvars
echo misc:Pre-Depends= >> debian/vcftools.substvars
dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -Pdebian/vcftools
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
chmod 0644 debian/vcftools/DEBIAN/control
chown 0:0 debian/vcftools/DEBIAN/control
dh_md5sums -a
(cd debian/vcftools >/dev/null ; find . -type f ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
chmod 0644 debian/vcftools/DEBIAN/md5sums
chown 0:0 debian/vcftools/DEBIAN/md5sums
dh_builddeb -a
dpkg-deb --build debian/vcftools ..
dpkg-deb: building package 'vcftools' in '../vcftools_0.1.14+dfsg-1_armhf.deb'.
dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../vcftools_0.1.14+dfsg-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build vcftools-0.1.14+dfsg
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20151122-0522
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
vcftools_0.1.14+dfsg-1_armhf.changes:
─────────────────────────────────────
Format: 1.8
Date: Mon, 16 Nov 2015 15:25:49 +0100
Source: vcftools
Binary: vcftools
Architecture: armhf
Version: 0.1.14+dfsg-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
vcftools - Collection of tools to work with VCF files
Closes: 805287
Changes:
vcftools (0.1.14+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Source has moved to github
Closes: #805287
* Remove unneeded get-orig-source script
* Adapt to new build system
* Delete unneeded overrides
* Remove redundant README.source
* move manpages into common dir
Checksums-Sha1:
97e57079bcf45211eaf70bcc6599e74fe150b6ef 372264 vcftools_0.1.14+dfsg-1_armhf.deb
Checksums-Sha256:
09cdf27318a89237ae2b3eadd18223d64687350b6ee47660676d4604eee4a368 372264 vcftools_0.1.14+dfsg-1_armhf.deb
Files:
1f4b78771404e2142533cea8ae590b74 372264 science optional vcftools_0.1.14+dfsg-1_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
vcftools_0.1.14+dfsg-1_armhf.deb
────────────────────────────────
new debian package, version 2.0.
size 372264 bytes: control archive=3467 bytes.
691 bytes, 15 lines control
7311 bytes, 103 lines md5sums
Package: vcftools
Version: 0.1.14+dfsg-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1255
Depends: libc6 (>= 2.15), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6), perl
Recommends: tabix
Section: science
Priority: optional
Homepage: https://vcftools.github.io/
Description: Collection of tools to work with VCF files
VCFtools is a program package designed for working with VCF files, such as
those generated by the 1000 Genomes Project. The aim of VCFtools is to
provide methods for working with VCF files: validating, merging, comparing
and calculate some basic population genetic statistics.
drwxr-xr-x root/root 0 2015-11-22 05:22 ./
drwxr-xr-x root/root 0 2015-11-22 05:22 ./usr/
drwxr-xr-x root/root 0 2015-11-22 05:22 ./usr/bin/
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-rwxr-xr-x root/root 1261 2015-11-22 05:22 ./usr/bin/fill-an-ac
-rwxr-xr-x root/root 8068 2015-11-22 05:22 ./usr/bin/fill-fs
-rwxr-xr-x root/root 6567 2015-11-22 05:22 ./usr/bin/fill-ref-md5
-rwxr-xr-x root/root 51253 2015-11-22 05:22 ./usr/bin/vcf-annotate
-rwxr-xr-x root/root 57390 2015-11-22 05:22 ./usr/bin/vcf-compare
-rwxr-xr-x root/root 10952 2015-11-22 05:22 ./usr/bin/vcf-concat
-rwxr-xr-x root/root 9226 2015-11-22 05:22 ./usr/bin/vcf-consensus
-rwxr-xr-x root/root 8797 2015-11-22 05:22 ./usr/bin/vcf-contrast
-rwxr-xr-x root/root 6176 2015-11-22 05:22 ./usr/bin/vcf-convert
-rwxr-xr-x root/root 2298 2015-11-22 05:22 ./usr/bin/vcf-fix-newlines
-rwxr-xr-x root/root 10549 2015-11-22 05:22 ./usr/bin/vcf-fix-ploidy
-rwxr-xr-x root/root 4376 2015-11-22 05:22 ./usr/bin/vcf-indel-stats
-rwxr-xr-x root/root 21173 2015-11-22 05:22 ./usr/bin/vcf-isec
-rwxr-xr-x root/root 22988 2015-11-22 05:22 ./usr/bin/vcf-merge
-rwxr-xr-x root/root 23234 2015-11-22 05:22 ./usr/bin/vcf-phased-join
-rwxr-xr-x root/root 15832 2015-11-22 05:22 ./usr/bin/vcf-query
-rwxr-xr-x root/root 2301 2015-11-22 05:22 ./usr/bin/vcf-shuffle-cols
-rwxr-xr-x root/root 3310 2015-11-22 05:22 ./usr/bin/vcf-sort
-rwxr-xr-x root/root 4874 2015-11-22 05:22 ./usr/bin/vcf-stats
-rwxr-xr-x root/root 7706 2015-11-22 05:22 ./usr/bin/vcf-subset
-rwxr-xr-x root/root 2543 2015-11-22 05:22 ./usr/bin/vcf-to-tab
-rwxr-xr-x root/root 1820 2015-11-22 05:22 ./usr/bin/vcf-tstv
-rwxr-xr-x root/root 3353 2015-11-22 05:22 ./usr/bin/vcf-validator
-rwxr-xr-x root/root 706700 2015-11-22 05:22 ./usr/bin/vcftools
drwxr-xr-x root/root 0 2015-11-22 05:22 ./usr/share/
drwxr-xr-x root/root 0 2015-11-22 05:22 ./usr/share/doc/
drwxr-xr-x root/root 0 2015-11-22 05:22 ./usr/share/doc/vcftools/
-rw-r--r-- root/root 1250 2015-11-16 14:25 ./usr/share/doc/vcftools/changelog.Debian.gz
-rw-r--r-- root/root 1961 2015-09-15 18:04 ./usr/share/doc/vcftools/changelog.gz
-rw-r--r-- root/root 1154 2015-08-09 07:50 ./usr/share/doc/vcftools/copyright
drwxr-xr-x root/root 0 2015-11-22 05:22 ./usr/share/doc/vcftools/examples/
-rw-r--r-- root/root 1685 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/annotate-test.vcf
-rw-r--r-- root/root 1376 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/annotate.out
-rw-r--r-- root/root 299 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/annotate.txt
-rw-r--r-- root/root 3107 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/annotate2.out
-rw-r--r-- root/root 1394 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/annotate3.out
-rw-r--r-- root/root 522 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/cmp-test-a-3.3.vcf
-rw-r--r-- root/root 638 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/cmp-test-a.vcf
-rw-r--r-- root/root 520 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/cmp-test-b-3.3.vcf
-rw-r--r-- root/root 636 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/cmp-test-b.vcf
-rw-r--r-- root/root 2633 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/cmp-test.out
-rw-r--r-- root/root 1180 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/concat-a.vcf
-rw-r--r-- root/root 674 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/concat-b.vcf
-rw-r--r-- root/root 972 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/concat-c.vcf
-rw-r--r-- root/root 2074 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/concat.out
-rw-r--r-- root/root 1038 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/consensus.fa
-rw-r--r-- root/root 1037 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/consensus.out
-rw-r--r-- root/root 1037 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/consensus.out2
-rw-r--r-- root/root 275 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/consensus.vcf
-rw-r--r-- root/root 2312 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/contrast.out.gz
-rw-r--r-- root/root 8723 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/contrast.vcf.gz
-rw-r--r-- root/root 1524 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/fill-an-ac.out
-rw-r--r-- root/root 1800 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/filters.txt.gz
-rw-r--r-- root/root 1924 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/fix-ploidy.out
-rw-r--r-- root/root 42 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/fix-ploidy.samples
-rw-r--r-- root/root 223 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/fix-ploidy.txt
-rw-r--r-- root/root 3335 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/fix-ploidy.vcf.gz
-rw-r--r-- root/root 564 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/floats.vcf
-rw-r--r-- root/root 48 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/indel-stats.out
-rw-r--r-- root/root 24 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/indel-stats.tab
-rw-r--r-- root/root 523 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/indel-stats.vcf
-rw-r--r-- root/root 2086 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/invalid-4.0.vcf
-rw-r--r-- root/root 1120 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/isec-n2-test.vcf.out
-rw-r--r-- root/root 965 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/merge-test-a.vcf
-rw-r--r-- root/root 1020 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/merge-test-b.vcf
-rw-r--r-- root/root 798 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/merge-test-c.vcf
-rw-r--r-- root/root 2240 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/merge-test.vcf.out
-rw-r--r-- root/root 230 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/parse-test.vcf
-rw-r--r-- root/root 1439 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/perl-api-1.pl
-rw-r--r-- root/root 255 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/query-test.out
-rw-r--r-- root/root 638 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/shuffle-test.vcf
-rw-r--r-- root/root 522 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/subset.SNPs.out
-rw-r--r-- root/root 931 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/subset.indels.out
-rw-r--r-- root/root 1229 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/subset.vcf
-rw-r--r-- root/root 1612 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/valid-3.3.vcf
-rw-r--r-- root/root 2182 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/valid-4.0.vcf
-rw-r--r-- root/root 465 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/valid-4.0.vcf.stats.gz
-rw-r--r-- root/root 2999 2015-09-15 18:04 ./usr/share/doc/vcftools/examples/valid-4.1.vcf
drwxr-xr-x root/root 0 2015-11-22 05:22 ./usr/share/man/
drwxr-xr-x root/root 0 2015-11-22 05:22 ./usr/share/man/man1/
-rw-r--r-- root/root 272 2015-11-22 05:22 ./usr/share/man/man1/fill-aa.1.gz
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-rw-r--r-- root/root 280 2015-11-22 05:22 ./usr/share/man/man1/fill-rsIDs.1.gz
-rw-r--r-- root/root 1281 2015-11-22 05:22 ./usr/share/man/man1/vcf-annotate.1.gz
-rw-r--r-- root/root 852 2015-11-22 05:22 ./usr/share/man/man1/vcf-compare.1.gz
-rw-r--r-- root/root 518 2015-11-22 05:22 ./usr/share/man/man1/vcf-concat.1.gz
-rw-r--r-- root/root 277 2015-11-22 05:22 ./usr/share/man/man1/vcf-consensus.1.gz
-rw-r--r-- root/root 724 2015-11-22 05:22 ./usr/share/man/man1/vcf-contrast.1.gz
-rw-r--r-- root/root 389 2015-11-22 05:22 ./usr/share/man/man1/vcf-convert.1.gz
-rw-r--r-- root/root 651 2015-11-22 05:22 ./usr/share/man/man1/vcf-fix-ploidy.1.gz
-rw-r--r-- root/root 366 2015-11-22 05:22 ./usr/share/man/man1/vcf-indel-stats.1.gz
-rw-r--r-- root/root 956 2015-11-22 05:22 ./usr/share/man/man1/vcf-isec.1.gz
-rw-r--r-- root/root 599 2015-11-22 05:22 ./usr/share/man/man1/vcf-merge.1.gz
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-rw-r--r-- root/root 500 2015-11-22 05:22 ./usr/share/man/man1/vcf-query.1.gz
-rw-r--r-- root/root 343 2015-11-22 05:22 ./usr/share/man/man1/vcf-shuffle-cols.1.gz
-rw-r--r-- root/root 254 2015-11-22 05:22 ./usr/share/man/man1/vcf-sort.1.gz
-rw-r--r-- root/root 685 2015-11-22 05:22 ./usr/share/man/man1/vcf-stats.1.gz
-rw-r--r-- root/root 558 2015-11-22 05:22 ./usr/share/man/man1/vcf-subset.1.gz
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-rw-r--r-- root/root 227 2015-11-22 05:22 ./usr/share/man/man1/vcf-tstv.1.gz
-rw-r--r-- root/root 307 2015-11-22 05:22 ./usr/share/man/man1/vcf-validator.1.gz
-rw-r--r-- root/root 6157 2015-11-22 05:22 ./usr/share/man/man1/vcftools.1.gz
drwxr-xr-x root/root 0 2015-11-22 05:22 ./usr/share/perl5/
-rw-r--r-- root/root 6731 2015-11-22 05:22 ./usr/share/perl5/FaSlice.pm
-rw-r--r-- root/root 103499 2015-11-22 05:22 ./usr/share/perl5/Vcf.pm
-rw-r--r-- root/root 18147 2015-11-22 05:22 ./usr/share/perl5/VcfStats.pm
┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
└──────────────────────────────────────────────────────────────────────────────┘
Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
└──────────────────────────────────────────────────────────────────────────────┘
Build Architecture: armhf
Build-Space: 36108
Build-Time: 647
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 195
Job: vcftools_0.1.14+dfsg-1
Machine Architecture: armhf
Package: vcftools
Package-Time: 902
Source-Version: 0.1.14+dfsg-1
Space: 36108
Status: successful
Version: 0.1.14+dfsg-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20151122-0522
Build needed 00:15:02, 36108k disc space