Raspbian Package Auto-Building

Build log for vcftools (0.1.12+dfsg-1+deb8u1) on armhf

vcftools0.1.12+dfsg-1+deb8u1armhf → 2019-05-27 22:22:00

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01

+==============================================================================+
| vcftools 0.1.12+dfsg-1+deb8u1 (armhf)        Mon, 27 May 2019 22:16:48 +0000 |
+==============================================================================+

Package: vcftools
Version: 0.1.12+dfsg-1+deb8u1
Source Version: 0.1.12+dfsg-1+deb8u1
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-aa7699d5-afce-49db-ab3d-7569c7b47274' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7763 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [9538 kB]
Fetched 17.3 MB in 12s (1389 kB/s)
Reading package lists...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'vcftools' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/vcftools/trunk
Need to get 281 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main vcftools 0.1.12+dfsg-1+deb8u1 (dsc) [2233 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main vcftools 0.1.12+dfsg-1+deb8u1 (tar) [262 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main vcftools 0.1.12+dfsg-1+deb8u1 (diff) [17.1 kB]
Fetched 281 kB in 0s (2141 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/vcftools-r4UTJz/vcftools-0.1.12+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/vcftools-r4UTJz' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/<<BUILDDIR>>/resolver-c34Snw/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keyring `/<<BUILDDIR>>/resolver-c34Snw/gpg/secring.gpg' created
gpg: keyring `/<<BUILDDIR>>/resolver-c34Snw/gpg/pubring.gpg' created
gpg: /<<BUILDDIR>>/resolver-c34Snw/gpg/trustdb.gpg: trustdb created
gpg: key F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1  (RSA: 1)
gpg: key F90AF620: secret key imported
gpg: key F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
Ign copy: ./ InRelease
Get:1 copy: ./ Release.gpg [299 B]
Get:2 copy: ./ Release [957 B]
Get:3 copy: ./ Sources [349 B]
Get:4 copy: ./ Packages [430 B]
Fetched 2035 B in 0s (52.7 kB/s)
Reading package lists...
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 7 not upgraded.
Need to get 814 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-c34Snw/apt_archive/ ./ sbuild-build-depends-core-dummy 0.invalid.0 [814 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 814 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12035 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 9), zlib1g-dev
Filtered Build-Depends: debhelper (>= 9), zlib1g-dev
dpkg-deb: building package `sbuild-build-depends-vcftools-dummy' in `/<<BUILDDIR>>/resolver-c34Snw/apt_archive/sbuild-build-depends-vcftools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-vcftools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
Ign copy: ./ InRelease
Get:1 copy: ./ Release.gpg [299 B]
Get:2 copy: ./ Release [963 B]
Get:3 copy: ./ Sources [495 B]
Get:4 copy: ./ Packages [575 B]
Fetched 2332 B in 0s (60.3 kB/s)
Reading package lists...
Reading package lists...

Install vcftools build dependencies (apt-based resolver)
--------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bsdmainutils debhelper file gettext gettext-base groff-base intltool-debian
  libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1 libpipeline1
  libunistring0 libxml2 man-db po-debconf zlib1g-dev
Suggested packages:
  wamerican wordlist whois vacation dh-make gettext-doc groff less www-browser
  libmail-box-perl
Recommended packages:
  curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
  libglib2.0-data shared-mime-info xdg-user-dirs xml-core
  libmail-sendmail-perl
The following NEW packages will be installed:
  bsdmainutils debhelper file gettext gettext-base groff-base intltool-debian
  libasprintf0c2 libcroco3 libffi6 libglib2.0-0 libmagic1 libpipeline1
  libunistring0 libxml2 man-db po-debconf sbuild-build-depends-vcftools-dummy
  zlib1g-dev
0 upgraded, 19 newly installed, 0 to remove and 7 not upgraded.
Need to get 8452 kB of archives.
After this operation, 24.3 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-c34Snw/apt_archive/ ./ sbuild-build-depends-vcftools-dummy 0.invalid.0 [824 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.4.0-1 [24.0 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-8 [1045 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.7.0.2-5 [972 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.19.3-2 [31.1 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.22+15-2+deb8u5 [245 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-5+deb8u7 [707 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.1-2+deb8u1 [18.6 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.42.1-1 [2250 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-3 [121 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.22+15-2+deb8u5 [60.3 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.19.3-2 [116 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.19.3-2 [1167 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu3 [220 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20150101+deb8u2 [817 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2 [199 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 8452 kB in 1s (4801 kB/s)
Selecting previously unselected package libpipeline1:armhf.
(Reading database ... 12035 files and directories currently installed.)
Preparing to unpack .../libpipeline1_1.4.0-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.0-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../groff-base_1.22.2-8_armhf.deb ...
Unpacking groff-base (1.22.2-8) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_9.0.6_armhf.deb ...
Unpacking bsdmainutils (9.0.6) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.7.0.2-5_armhf.deb ...
Unpacking man-db (2.7.0.2-5) ...
Selecting previously unselected package libasprintf0c2:armhf.
Preparing to unpack .../libasprintf0c2_0.19.3-2_armhf.deb ...
Unpacking libasprintf0c2:armhf (0.19.3-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../libmagic1_1%3a5.22+15-2+deb8u5_armhf.deb ...
Unpacking libmagic1:armhf (1:5.22+15-2+deb8u5) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../libxml2_2.9.1+dfsg1-5+deb8u7_armhf.deb ...
Unpacking libxml2:armhf (2.9.1+dfsg1-5+deb8u7) ...
Selecting previously unselected package libffi6:armhf.
Preparing to unpack .../libffi6_3.1-2+deb8u1_armhf.deb ...
Unpacking libffi6:armhf (3.1-2+deb8u1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../libglib2.0-0_2.42.1-1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.42.1-1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../libcroco3_0.6.8-3_armhf.deb ...
Unpacking libcroco3:armhf (0.6.8-3) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../libunistring0_0.9.3-5.2_armhf.deb ...
Unpacking libunistring0:armhf (0.9.3-5.2) ...
Selecting previously unselected package file.
Preparing to unpack .../file_1%3a5.22+15-2+deb8u5_armhf.deb ...
Unpacking file (1:5.22+15-2+deb8u5) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../gettext-base_0.19.3-2_armhf.deb ...
Unpacking gettext-base (0.19.3-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../gettext_0.19.3-2_armhf.deb ...
Unpacking gettext (0.19.3-2) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../intltool-debian_0.35.0+20060710.1_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.1) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../po-debconf_1.0.16+nmu3_all.deb ...
Unpacking po-debconf (1.0.16+nmu3) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../debhelper_9.20150101+deb8u2_all.deb ...
Unpacking debhelper (9.20150101+deb8u2) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../zlib1g-dev_1%3a1.2.8.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Selecting previously unselected package sbuild-build-depends-vcftools-dummy.
Preparing to unpack .../sbuild-build-depends-vcftools-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-vcftools-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.4.0-1) ...
Setting up groff-base (1.22.2-8) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up man-db (2.7.0.2-5) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.19.3-2) ...
Setting up libmagic1:armhf (1:5.22+15-2+deb8u5) ...
Setting up libxml2:armhf (2.9.1+dfsg1-5+deb8u7) ...
Setting up libffi6:armhf (3.1-2+deb8u1) ...
Setting up libglib2.0-0:armhf (2.42.1-1) ...
No schema files found: doing nothing.
Setting up libcroco3:armhf (0.6.8-3) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up file (1:5.22+15-2+deb8u5) ...
Setting up gettext-base (0.19.3-2) ...
Setting up gettext (0.19.3-2) ...
Setting up intltool-debian (0.35.0+20060710.1) ...
Setting up po-debconf (1.0.16+nmu3) ...
Setting up debhelper (9.20150101+deb8u2) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Setting up sbuild-build-depends-vcftools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-18+deb8u10) ...

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.25-5+deb8u1 dpkg-dev_1.17.27 g++-4.9_4.9.2-10+deb8u2 gcc-4.9_4.9.2-10+deb8u2 libc6-dev_2.19-18+deb8u10 libstdc++-4.9-dev_4.9.2-10+deb8u2 libstdc++6_4.9.2-10+deb8u2 linux-libc-dev_3.16.7-ckt11-1+deb8u4+rpi1
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.8.5 base-files_8+rpi1 base-passwd_3.5.37 bash_4.3-11+deb8u1 binutils_2.25-5+deb8u1 bsdmainutils_9.0.6 bsdutils_1:2.25.2-6 build-essential_11.7 bzip2_1.0.6-7 coreutils_8.23-4 cpio_2.11+dfsg-4.1+deb8u1 cpp_4:4.9.2-2 cpp-4.9_4.9.2-10+deb8u2 dash_0.5.7-4 debconf_1.5.56+deb8u1 debconf-i18n_1.5.56+deb8u1 debfoster_2.7-2 debhelper_9.20150101+deb8u2 debianutils_4.4 diffutils_1:3.3-1 dmsetup_2:1.02.90-2.2+deb8u1 dpkg_1.17.27 dpkg-dev_1.17.27 e2fslibs_1.42.12-2 e2fsprogs_1.42.12-2 fakeroot_1.20.2-1 file_1:5.22+15-2+deb8u5 findutils_4.4.2-9 g++_4:4.9.2-2 g++-4.9_4.9.2-10+deb8u2 gcc_4:4.9.2-2 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-1 gcc-4.9_4.9.2-10+deb8u2 gcc-4.9-base_4.9.2-10+deb8u2 gettext_0.19.3-2 gettext-base_0.19.3-2 gnupg_1.4.18-7+deb8u5 gpgv_1.4.18-7+deb8u5 grep_2.20-4.1 groff-base_1.22.2-8 gzip_1.6-4 hostname_3.15 init_1.22 init-system-helpers_1.22 initramfs-tools_0.120+deb8u3 initscripts_2.88dsf-59 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.4-2+rpi1 kmod_18-3 libacl1_2.2.52-2 libapt-pkg4.12_1.0.9.8.5 libasan1_4.9.2-10+deb8u2 libasprintf0c2_0.19.3-2 libatomic1_4.9.2-10+deb8u2 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1 libblkid1_2.25.2-6 libbz2-1.0_1.0.6-7 libc-bin_2.19-18+deb8u10 libc-dev-bin_2.19-18+deb8u10 libc6_2.19-18+deb8u10 libc6-dev_2.19-18+deb8u10 libcap2_1:2.24-8 libcap2-bin_1:2.24-8 libcloog-isl4_0.18.2-1 libcomerr2_1.42.12-2 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libdb5.3_5.3.28-9+deb8u1 libdbus-1-3_1.8.22-0+deb8u1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.2+deb8u1 libdpkg-perl_1.17.27 libdrm2_2.4.58-2 libfakeroot_1.20.2-1 libffi6_3.1-2+deb8u1 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.2-10+deb8u2 libgcc1_1:4.9.2-10+deb8u2 libgcrypt20_1.6.3-2+deb8u5 libgdbm3_1.8.3-13.1 libglib2.0-0_2.42.1-1 libgmp10_2:6.0.0+dfsg-6+rpi1 libgomp1_4.9.2-10+deb8u2 libgpg-error0_1.17-3 libisl10_0.12.2-2 libklibc_2.0.4-2+rpi1 libkmod2_18-3 liblocale-gettext-perl_1.05-8+b1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.22+15-2+deb8u5 libmount1_2.25.2-6 libmpc3_1.0.2-1 libmpfr4_3.1.2-2 libncurses5_5.9+20140913-1+deb8u3 libncursesw5_5.9+20140913-1+deb8u3 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libpam-modules_1.1.8-3.1+deb8u2 libpam-modules-bin_1.1.8-3.1+deb8u2 libpam-runtime_1.1.8-3.1+deb8u2 libpam0g_1.1.8-3.1+deb8u2 libpcre3_2:8.35-3.3+deb8u4 libpipeline1_1.4.0-1 libpng12-0_1.2.50-2+deb8u3 libprocps3_2:3.3.9-9+deb8u1 libreadline6_6.3-8 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2 libsmartcols1_2.25.2-6 libss2_1.42.12-2 libstdc++-4.9-dev_4.9.2-10+deb8u2 libstdc++6_4.9.2-10+deb8u2 libsystemd0_215-17+deb8u9 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libtimedate-perl_2.3000-2 libtinfo5_5.9+20140913-1+deb8u3 libubsan0_4.9.2-10+deb8u2 libudev1_215-17+deb8u9 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3 libuuid1_2.25.2-6 libxml2_2.9.1+dfsg1-5+deb8u7 linux-libc-dev_3.16.7-ckt11-1+deb8u4+rpi1 login_1:4.2-3+deb8u4 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.1 makedev_2.3.1-93 man-db_2.7.0.2-5 mawk_1.3.3-17 mount_2.25.2-6 mountall_2.54 multiarch-support_2.19-18+deb8u10 ncurses-base_5.9+20140913-1+deb8u3 ncurses-bin_5.9+20140913-1+deb8u3 passwd_1:4.2-3+deb8u4 patch_2.7.5-1+deb8u1 perl_5.20.2-3+deb8u12 perl-base_5.20.2-3+deb8u12 perl-modules_5.20.2-3+deb8u12 plymouth_0.9.0-9 po-debconf_1.0.16+nmu3 procps_2:3.3.9-9+deb8u1 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-vcftools-dummy_0.invalid.0 sed_4.2.2-4+deb8u1 sensible-utils_0.0.9+deb8u1 startpar_0.59-3 systemd_215-17+deb8u9 systemd-sysv_215-17+deb8u9 sysv-rc_2.88dsf-59 sysvinit-utils_2.88dsf-59 tar_1.27.1-2+deb8u2 tzdata_2018i-0+deb8u1 udev_215-17+deb8u9 util-linux_2.25.2-6 xz-utils_5.1.1alpha+20120614-2 zlib1g_1:1.2.8.dfsg-2 zlib1g-dev_1:1.2.8.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Mon May 27 19:54:46 2019 UTC using RSA key ID 387B5847
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./vcftools_0.1.12+dfsg-1+deb8u1.dsc
dpkg-source: info: extracting vcftools in /<<BUILDDIR>>/vcftools-0.1.12+dfsg
dpkg-source: info: unpacking vcftools_0.1.12+dfsg.orig.tar.gz
dpkg-source: info: unpacking vcftools_0.1.12+dfsg-1+deb8u1.debian.tar.xz
dpkg-source: info: applying make.patch
dpkg-source: info: applying use-dpkg-buildflags.patch
dpkg-source: info: applying CVE-2018-11099_CVE-2018-11129_CVE-2018-11130.patch

Check disk space
----------------

df: Warning: cannot read table of mounted file systems: No such file or directory
Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-aa7699d5-afce-49db-ab3d-7569c7b47274
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: source package vcftools
dpkg-buildpackage: source version 0.1.12+dfsg-1+deb8u1
dpkg-buildpackage: source distribution jessie-security
 dpkg-source --before-build vcftools-0.1.12+dfsg
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
dh clean 
   dh_testdir
   dh_auto_clean
	make -j1 clean
make[1]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg'
make[2]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/cpp'
make[2]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/cpp'
make[2]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/perl'
make[2]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/perl'
make[1]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg'
   debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg'
dh_clean
	rm -f debian/vcftools.substvars
	rm -f debian/vcftools.*.debhelper
	rm -rf debian/vcftools/
	rm -f debian/*.debhelper.log
	rm -f debian/files
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
	rm -f *-stamp
# [ -r Makefile ] && make clean ?
make[1]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg'
 debian/rules build-arch
dh build-arch 
   dh_testdir -a
   dh_auto_configure -a
   dh_auto_build -a
	make -j1
make[1]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg'
make[2]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/cpp'
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro vcftools.cpp -o vcftools.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro vcftools.cpp > vcftools.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro bcf_file.cpp -o bcf_file.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro bcf_file.cpp > bcf_file.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro vcf_file.cpp -o vcf_file.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro vcf_file.cpp > vcf_file.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro variant_file.cpp -o variant_file.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro variant_file.cpp > variant_file.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro header.cpp -o header.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro header.cpp > header.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro bcf_entry.cpp -o bcf_entry.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro bcf_entry.cpp > bcf_entry.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro vcf_entry.cpp -o vcf_entry.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro vcf_entry.cpp > vcf_entry.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro entry.cpp -o entry.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro entry.cpp > entry.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro entry_getters.cpp -o entry_getters.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro entry_getters.cpp > entry_getters.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro entry_setters.cpp -o entry_setters.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro entry_setters.cpp > entry_setters.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro vcf_entry_setters.cpp -o vcf_entry_setters.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro vcf_entry_setters.cpp > vcf_entry_setters.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro bcf_entry_setters.cpp -o bcf_entry_setters.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro bcf_entry_setters.cpp > bcf_entry_setters.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro entry_filters.cpp -o entry_filters.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro entry_filters.cpp > entry_filters.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro variant_file_filters.cpp -o variant_file_filters.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro variant_file_filters.cpp > variant_file_filters.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro variant_file_output.cpp -o variant_file_output.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro variant_file_output.cpp > variant_file_output.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro parameters.cpp -o parameters.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro parameters.cpp > parameters.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro variant_file_format_convert.cpp -o variant_file_format_convert.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro variant_file_format_convert.cpp > variant_file_format_convert.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro variant_file_diff.cpp -o variant_file_diff.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro variant_file_diff.cpp > variant_file_diff.d
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro output_log.cpp -o output_log.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro output_log.cpp > output_log.d
gcc -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64  -c -o bgzf.o bgzf.c
bgzf.c: In function 'bgzf_check_EOF':
bgzf.c:60:34: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result]
 #define _bgzf_read(fp, buf, len) fread((buf), 1, (len), (FILE*)(fp))
                                  ^
bgzf.c:622:2: note: in expansion of macro '_bgzf_read'
  _bgzf_read(fp->fp, buf, 28);
  ^
g++ -c -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro gamma.cpp -o gamma.o
g++ -MM -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -O2 -Wl,-z,relro gamma.cpp > gamma.d
g++ -D_FORTIFY_SOURCE=2 -O2 -D_FILE_OFFSET_BITS=64 vcftools.o bcf_file.o vcf_file.o variant_file.o header.o bcf_entry.o vcf_entry.o entry.o entry_getters.o entry_setters.o vcf_entry_setters.o bcf_entry_setters.o entry_filters.o variant_file_filters.o variant_file_output.o parameters.o variant_file_format_convert.o variant_file_diff.o output_log.o bgzf.o gamma.o -Wl,-z,relro -o vcftools -lz 
cp /<<BUILDDIR>>/vcftools-0.1.12+dfsg/cpp/vcftools /<<BUILDDIR>>/vcftools-0.1.12+dfsg//bin/vcftools
make[2]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/cpp'
make[2]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/perl'
make[2]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/perl'
make[1]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg'
   dh_auto_test -a
 fakeroot debian/rules binary-arch
dh binary-arch 
   dh_testroot -a
   dh_prep -a
	rm -f debian/vcftools.substvars
	rm -f debian/vcftools.*.debhelper
	rm -rf debian/vcftools/
   dh_auto_install -a
	install -d debian/vcftools
	make -j1 install DESTDIR=/<<BUILDDIR>>/vcftools-0.1.12\+dfsg/debian/vcftools AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg'
make[2]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/cpp'
make[2]: 'vcftools' is up to date.
make[2]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/cpp'
make[2]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/perl'
make[2]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg/perl'
make[1]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg'
   dh_install -a
	install -d debian/vcftools/usr
	cp -a ./bin debian/vcftools/usr/
	install -d debian/vcftools/usr/share/perl5
	cp -a ./lib/perl5/site_perl/FaSlice.pm debian/vcftools/usr/share/perl5/
	cp -a ./lib/perl5/site_perl/Vcf.pm debian/vcftools/usr/share/perl5/
	cp -a ./lib/perl5/site_perl/VcfStats.pm debian/vcftools/usr/share/perl5/
   dh_installdocs -a
	install -g 0 -o 0 -d debian/vcftools/usr/share/doc/vcftools
	install -g 0 -o 0 -m 644 -p debian/copyright debian/vcftools/usr/share/doc/vcftools/copyright
   debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg'
dh_installchangelogs perl/ChangeLog
	install -o 0 -g 0 -p -m644 debian/changelog debian/vcftools/usr/share/doc/vcftools/changelog.Debian
	install -o 0 -g 0 -p -m644 perl/ChangeLog debian/vcftools/usr/share/doc/vcftools/changelog
make[1]: Leaving directory '/<<BUILDDIR>>/vcftools-0.1.12+dfsg'
   dh_installexamples -a
	install -d debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/annotate-test.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/annotate.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/annotate.txt debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/annotate2.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/annotate3.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/cmp-test-a-3.3.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/cmp-test-a.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/cmp-test-b-3.3.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/cmp-test-b.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/cmp-test.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/concat-a.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/concat-b.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/concat-c.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/concat.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/consensus.fa debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/consensus.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/consensus.out2 debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/consensus.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/contrast.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/contrast.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/fill-an-ac.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/filters.txt debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/fix-ploidy.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/fix-ploidy.samples debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/fix-ploidy.txt debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/fix-ploidy.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/floats.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/indel-stats.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/indel-stats.tab debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/indel-stats.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/invalid-4.0.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/isec-n2-test.vcf.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/merge-test-a.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/merge-test-b.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/merge-test-c.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/merge-test.vcf.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/parse-test.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/perl-api-1.pl debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/query-test.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/shuffle-test.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/subset.indels.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/subset.SNPs.out debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/subset.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/valid-3.3.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/valid-4.0.vcf debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/valid-4.0.vcf.stats debian/vcftools/usr/share/doc/vcftools/examples
	cp -a examples/valid-4.1.vcf debian/vcftools/usr/share/doc/vcftools/examples
   dh_installman -a
	install -d debian/vcftools/usr/share/man/man1/
	install -p -m644 debian/vcftools.1 debian/vcftools/usr/share/man/man1/vcftools.1
	install -p -m644 debian/vcf-annotate.1 debian/vcftools/usr/share/man/man1/vcf-annotate.1
	install -p -m644 debian/vcf-compare.1 debian/vcftools/usr/share/man/man1/vcf-compare.1
	install -p -m644 debian/vcf-concat.1 debian/vcftools/usr/share/man/man1/vcf-concat.1
	install -p -m644 debian/vcf-convert.1 debian/vcftools/usr/share/man/man1/vcf-convert.1
	install -p -m644 debian/vcf-isec.1 debian/vcftools/usr/share/man/man1/vcf-isec.1
	install -p -m644 debian/vcf-merge.1 debian/vcftools/usr/share/man/man1/vcf-merge.1
	install -p -m644 debian/vcf-query.1 debian/vcftools/usr/share/man/man1/vcf-query.1
	install -p -m644 debian/vcf-sort.1 debian/vcftools/usr/share/man/man1/vcf-sort.1
	install -p -m644 debian/vcf-stats.1 debian/vcftools/usr/share/man/man1/vcf-stats.1
	install -p -m644 debian/vcf-subset.1 debian/vcftools/usr/share/man/man1/vcf-subset.1
	install -p -m644 debian/vcf-to-tab.1 debian/vcftools/usr/share/man/man1/vcf-to-tab.1
	install -p -m644 debian/vcf-validator.1 debian/vcftools/usr/share/man/man1/vcf-validator.1
	install -p -m644 debian/fill-aa.1 debian/vcftools/usr/share/man/man1/fill-aa.1
	install -p -m644 debian/fill-an-ac.1 debian/vcftools/usr/share/man/man1/fill-an-ac.1
	install -p -m644 debian/fill-rsIDs.1 debian/vcftools/usr/share/man/man1/fill-rsIDs.1
	install -p -m644 debian/fill-fs.1 debian/vcftools/usr/share/man/man1/fill-fs.1
	install -p -m644 debian/fill-ref-md5.1 debian/vcftools/usr/share/man/man1/fill-ref-md5.1
	install -p -m644 debian/vcf-consensus.1 debian/vcftools/usr/share/man/man1/vcf-consensus.1
	install -p -m644 debian/vcf-contrast.1 debian/vcftools/usr/share/man/man1/vcf-contrast.1
	install -p -m644 debian/vcf-fix-ploidy.1 debian/vcftools/usr/share/man/man1/vcf-fix-ploidy.1
	install -p -m644 debian/vcf-indel-stats.1 debian/vcftools/usr/share/man/man1/vcf-indel-stats.1
	install -p -m644 debian/vcf-phased-join.1 debian/vcftools/usr/share/man/man1/vcf-phased-join.1
	install -p -m644 debian/vcf-shuffle-cols.1 debian/vcftools/usr/share/man/man1/vcf-shuffle-cols.1
	install -p -m644 debian/vcf-tstv.1 debian/vcftools/usr/share/man/man1/vcf-tstv.1
	man --recode UTF-8 ./vcftools\.1 > vcftools\.1\.new
	chmod 644 vcftools.1.new
	mv -f vcftools.1.new vcftools.1
	man --recode UTF-8 ./vcf\-annotate\.1 > vcf\-annotate\.1\.new
	chmod 644 vcf-annotate.1.new
	mv -f vcf-annotate.1.new vcf-annotate.1
	man --recode UTF-8 ./vcf\-compare\.1 > vcf\-compare\.1\.new
	chmod 644 vcf-compare.1.new
	mv -f vcf-compare.1.new vcf-compare.1
	man --recode UTF-8 ./vcf\-concat\.1 > vcf\-concat\.1\.new
	chmod 644 vcf-concat.1.new
	mv -f vcf-concat.1.new vcf-concat.1
	man --recode UTF-8 ./vcf\-convert\.1 > vcf\-convert\.1\.new
	chmod 644 vcf-convert.1.new
	mv -f vcf-convert.1.new vcf-convert.1
	man --recode UTF-8 ./vcf\-isec\.1 > vcf\-isec\.1\.new
	chmod 644 vcf-isec.1.new
	mv -f vcf-isec.1.new vcf-isec.1
	man --recode UTF-8 ./vcf\-merge\.1 > vcf\-merge\.1\.new
	chmod 644 vcf-merge.1.new
	mv -f vcf-merge.1.new vcf-merge.1
	man --recode UTF-8 ./vcf\-query\.1 > vcf\-query\.1\.new
	chmod 644 vcf-query.1.new
	mv -f vcf-query.1.new vcf-query.1
	man --recode UTF-8 ./vcf\-sort\.1 > vcf\-sort\.1\.new
	chmod 644 vcf-sort.1.new
	mv -f vcf-sort.1.new vcf-sort.1
	man --recode UTF-8 ./vcf\-stats\.1 > vcf\-stats\.1\.new
	chmod 644 vcf-stats.1.new
	mv -f vcf-stats.1.new vcf-stats.1
	man --recode UTF-8 ./vcf\-subset\.1 > vcf\-subset\.1\.new
	chmod 644 vcf-subset.1.new
	mv -f vcf-subset.1.new vcf-subset.1
	man --recode UTF-8 ./vcf\-to\-tab\.1 > vcf\-to\-tab\.1\.new
	chmod 644 vcf-to-tab.1.new
	mv -f vcf-to-tab.1.new vcf-to-tab.1
	man --recode UTF-8 ./vcf\-validator\.1 > vcf\-validator\.1\.new
	chmod 644 vcf-validator.1.new
	mv -f vcf-validator.1.new vcf-validator.1
	man --recode UTF-8 ./fill\-aa\.1 > fill\-aa\.1\.new
	chmod 644 fill-aa.1.new
	mv -f fill-aa.1.new fill-aa.1
	man --recode UTF-8 ./fill\-an\-ac\.1 > fill\-an\-ac\.1\.new
	chmod 644 fill-an-ac.1.new
	mv -f fill-an-ac.1.new fill-an-ac.1
	man --recode UTF-8 ./fill\-rsIDs\.1 > fill\-rsIDs\.1\.new
	chmod 644 fill-rsIDs.1.new
	mv -f fill-rsIDs.1.new fill-rsIDs.1
	man --recode UTF-8 ./fill\-fs\.1 > fill\-fs\.1\.new
	chmod 644 fill-fs.1.new
	mv -f fill-fs.1.new fill-fs.1
	man --recode UTF-8 ./fill\-ref\-md5\.1 > fill\-ref\-md5\.1\.new
	chmod 644 fill-ref-md5.1.new
	mv -f fill-ref-md5.1.new fill-ref-md5.1
	man --recode UTF-8 ./vcf\-consensus\.1 > vcf\-consensus\.1\.new
	chmod 644 vcf-consensus.1.new
	mv -f vcf-consensus.1.new vcf-consensus.1
	man --recode UTF-8 ./vcf\-contrast\.1 > vcf\-contrast\.1\.new
	chmod 644 vcf-contrast.1.new
	mv -f vcf-contrast.1.new vcf-contrast.1
	man --recode UTF-8 ./vcf\-fix\-ploidy\.1 > vcf\-fix\-ploidy\.1\.new
	chmod 644 vcf-fix-ploidy.1.new
	mv -f vcf-fix-ploidy.1.new vcf-fix-ploidy.1
	man --recode UTF-8 ./vcf\-indel\-stats\.1 > vcf\-indel\-stats\.1\.new
	chmod 644 vcf-indel-stats.1.new
	mv -f vcf-indel-stats.1.new vcf-indel-stats.1
	man --recode UTF-8 ./vcf\-phased\-join\.1 > vcf\-phased\-join\.1\.new
	chmod 644 vcf-phased-join.1.new
	mv -f vcf-phased-join.1.new vcf-phased-join.1
	man --recode UTF-8 ./vcf\-shuffle\-cols\.1 > vcf\-shuffle\-cols\.1\.new
	chmod 644 vcf-shuffle-cols.1.new
	mv -f vcf-shuffle-cols.1.new vcf-shuffle-cols.1
	man --recode UTF-8 ./vcf\-tstv\.1 > vcf\-tstv\.1\.new
	chmod 644 vcf-tstv.1.new
	mv -f vcf-tstv.1.new vcf-tstv.1
   dh_lintian -a
	install -d debian/vcftools/usr/share/lintian/overrides
	install -p -m644 debian/vcftools.lintian-overrides debian/vcftools/usr/share/lintian/overrides/vcftools
   dh_perl -a
	(grep -s -v perl:Depends debian/vcftools.substvars; echo perl:Depends=perl) > debian/vcftools.substvars.new
	mv debian/vcftools.substvars.new debian/vcftools.substvars
	rmdir --ignore-fail-on-non-empty --parents debian/vcftools/usr/share/perl5
   dh_link -a
   dh_compress -a
	cd debian/vcftools
	chmod a-x usr/share/man/man1/vcftools.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-tstv.1 usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/changelog usr/share/doc/vcftools/examples/contrast.out usr/share/doc/vcftools/examples/contrast.vcf usr/share/doc/vcftools/examples/filters.txt usr/share/doc/vcftools/examples/fix-ploidy.vcf usr/share/doc/vcftools/examples/valid-4.0.vcf.stats
	gzip -9nf usr/share/man/man1/vcftools.1 usr/share/man/man1/vcf-annotate.1 usr/share/man/man1/vcf-compare.1 usr/share/man/man1/vcf-concat.1 usr/share/man/man1/vcf-convert.1 usr/share/man/man1/vcf-isec.1 usr/share/man/man1/vcf-merge.1 usr/share/man/man1/vcf-query.1 usr/share/man/man1/vcf-sort.1 usr/share/man/man1/vcf-stats.1 usr/share/man/man1/vcf-subset.1 usr/share/man/man1/vcf-to-tab.1 usr/share/man/man1/vcf-validator.1 usr/share/man/man1/fill-aa.1 usr/share/man/man1/fill-an-ac.1 usr/share/man/man1/fill-rsIDs.1 usr/share/man/man1/fill-fs.1 usr/share/man/man1/fill-ref-md5.1 usr/share/man/man1/vcf-consensus.1 usr/share/man/man1/vcf-contrast.1 usr/share/man/man1/vcf-fix-ploidy.1 usr/share/man/man1/vcf-indel-stats.1 usr/share/man/man1/vcf-phased-join.1 usr/share/man/man1/vcf-shuffle-cols.1 usr/share/man/man1/vcf-tstv.1 usr/share/doc/vcftools/changelog.Debian usr/share/doc/vcftools/changelog usr/share/doc/vcftools/examples/contrast.out usr/share/doc/vcftools/examples/contrast.vcf usr/share/doc/vcftools/examples/filters.txt usr/share/doc/vcftools/examples/fix-ploidy.vcf usr/share/doc/vcftools/examples/valid-4.0.vcf.stats
	cd '/<<BUILDDIR>>/vcftools-0.1.12+dfsg'
   dh_fixperms -a
	find debian/vcftools  -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0
	find debian/vcftools ! -type l  -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
	find debian/vcftools/usr/share/doc -type f  ! -regex 'debian/vcftools/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 644
	find debian/vcftools/usr/share/doc -type d  -print0 2>/dev/null | xargs -0r chmod 755
	find debian/vcftools/usr/share/man debian/vcftools/usr/man/ debian/vcftools/usr/X11*/man/ -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/vcftools -perm -5 -type f \( -name '*.so.*' -or -name '*.so' -or -name '*.la' -or -name '*.a' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/vcftools/usr/include -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/vcftools/usr/share/applications -type f  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/vcftools -perm -5 -type f \( -name '*.cmxs' \)  -print0 2>/dev/null | xargs -0r chmod 644
	find debian/vcftools/usr/lib/arm-linux-gnueabihf/perl5/5.20 debian/vcftools/usr/share/perl5 -type f -perm -5 -name '*.pm'  -print0 2>/dev/null | xargs -0r chmod a-X
	find debian/vcftools/usr/bin -type f  -print0 2>/dev/null | xargs -0r chmod a+x
	find debian/vcftools/usr/lib -type f -name '*.ali'  -print0 2>/dev/null | xargs -0r chmod uga-w
	find debian/vcftools/usr/share/lintian/overrides -type f  -print0 2>/dev/null | xargs -0r chmod 644
   dh_strip -a
	strip --remove-section=.comment --remove-section=.note debian/vcftools/usr/bin/vcftools
   dh_makeshlibs -a
	rm -f debian/vcftools/DEBIAN/shlibs
   dh_shlibdeps -a
	install -o 0 -g 0 -d debian/vcftools/DEBIAN
	dpkg-shlibdeps -Tdebian/vcftools.substvars debian/vcftools/usr/bin/vcftools
dpkg-shlibdeps: warning: debian/vcftools/usr/bin/vcftools contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb -a
   dh_gencontrol -a
	echo misc:Depends= >> debian/vcftools.substvars
	dpkg-gencontrol -pvcftools -ldebian/changelog -Tdebian/vcftools.substvars -Pdebian/vcftools
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
	chmod 644 debian/vcftools/DEBIAN/control
	chown 0:0 debian/vcftools/DEBIAN/control
   dh_md5sums -a
	(cd debian/vcftools >/dev/null ; find . -type f  ! -regex './DEBIAN/.*' -printf '%P\0' | LC_ALL=C sort -z | xargs -r0 md5sum > DEBIAN/md5sums) >/dev/null
	chmod 644 debian/vcftools/DEBIAN/md5sums
	chown 0:0 debian/vcftools/DEBIAN/md5sums
   dh_builddeb -a
	dpkg-deb --build debian/vcftools ..
dpkg-deb: building package `vcftools' in `../vcftools_0.1.12+dfsg-1+deb8u1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../vcftools_0.1.12+dfsg-1+deb8u1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build vcftools-0.1.12+dfsg
dpkg-buildpackage: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-05-27T22:21:57Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


vcftools_0.1.12+dfsg-1+deb8u1_armhf.changes:
--------------------------------------------

Format: 1.8
Date: Mon, 27 May 2019 19:03:02 +0200
Source: vcftools
Binary: vcftools
Architecture: armhf
Version: 0.1.12+dfsg-1+deb8u1
Distribution: jessie-staging
Urgency: high
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Thorsten Alteholz <debian@alteholz.de>
Description:
 vcftools   - Collection of tools to work with VCF files
Changes:
 vcftools (0.1.12+dfsg-1+deb8u1) jessie-security; urgency=high
 .
   * Add patch for:
       CVE-2018-11099
       CVE-2018-11129
       CVE-2018-11130
Checksums-Sha1:
 12bbd7a38d169e2dc8c46c366de4feedc80f9497 344340 vcftools_0.1.12+dfsg-1+deb8u1_armhf.deb
Checksums-Sha256:
 6e4649051f6eb76c0ef9f6cc141860991946240abd1e904f1921b87953cb4d2e 344340 vcftools_0.1.12+dfsg-1+deb8u1_armhf.deb
Files:
 a5248cbe5ad063080372c5bd1c1e3a8b 344340 science extra vcftools_0.1.12+dfsg-1+deb8u1_armhf.deb

+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


vcftools_0.1.12+dfsg-1+deb8u1_armhf.deb
---------------------------------------

 new debian package, version 2.0.
 size 344340 bytes: control archive=3732 bytes.
     698 bytes,    15 lines      control              
    7323 bytes,   103 lines      md5sums              
 Package: vcftools
 Version: 0.1.12+dfsg-1+deb8u1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1173
 Depends: libc6 (>= 2.4), libgcc1 (>= 1:4.4.0), libstdc++6 (>= 4.9), zlib1g (>= 1:1.2.6), perl
 Recommends: tabix
 Section: science
 Priority: extra
 Homepage: http://vcftools.sourceforge.net
 Description: Collection of tools to work with VCF files
  VCFtools is a program package designed for working with VCF files, such as
  those generated by the 1000 Genomes Project. The aim of VCFtools is to
  provide methods for working with VCF files: validating, merging, comparing
  and calculate some basic population genetic statistics.

drwxr-xr-x root/root         0 2019-05-27 22:21 ./
drwxr-xr-x root/root         0 2019-05-27 22:21 ./usr/
drwxr-xr-x root/root         0 2019-05-27 22:21 ./usr/bin/
-rwxr-xr-x root/root      6104 2019-05-27 22:21 ./usr/bin/fill-aa
-rwxr-xr-x root/root      1261 2019-05-27 22:21 ./usr/bin/fill-an-ac
-rwxr-xr-x root/root      8068 2019-05-27 22:21 ./usr/bin/fill-fs
-rwxr-xr-x root/root      6567 2019-05-27 22:21 ./usr/bin/fill-ref-md5
-rwxr-xr-x root/root     51253 2019-05-27 22:21 ./usr/bin/vcf-annotate
-rwxr-xr-x root/root     57390 2019-05-27 22:21 ./usr/bin/vcf-compare
-rwxr-xr-x root/root     10952 2019-05-27 22:21 ./usr/bin/vcf-concat
-rwxr-xr-x root/root      6594 2019-05-27 22:21 ./usr/bin/vcf-consensus
-rwxr-xr-x root/root      8797 2019-05-27 22:21 ./usr/bin/vcf-contrast
-rwxr-xr-x root/root      6176 2019-05-27 22:21 ./usr/bin/vcf-convert
-rwxr-xr-x root/root     10549 2019-05-27 22:21 ./usr/bin/vcf-fix-ploidy
-rwxr-xr-x root/root      4376 2019-05-27 22:21 ./usr/bin/vcf-indel-stats
-rwxr-xr-x root/root     21173 2019-05-27 22:21 ./usr/bin/vcf-isec
-rwxr-xr-x root/root     22988 2019-05-27 22:21 ./usr/bin/vcf-merge
-rwxr-xr-x root/root     23234 2019-05-27 22:21 ./usr/bin/vcf-phased-join
-rwxr-xr-x root/root     15715 2019-05-27 22:21 ./usr/bin/vcf-query
-rwxr-xr-x root/root      2301 2019-05-27 22:21 ./usr/bin/vcf-shuffle-cols
-rwxr-xr-x root/root      2636 2019-05-27 22:21 ./usr/bin/vcf-sort
-rwxr-xr-x root/root      4874 2019-05-27 22:21 ./usr/bin/vcf-stats
-rwxr-xr-x root/root      7706 2019-05-27 22:21 ./usr/bin/vcf-subset
-rwxr-xr-x root/root      2392 2019-05-27 22:21 ./usr/bin/vcf-to-tab
-rwxr-xr-x root/root      1820 2019-05-27 22:21 ./usr/bin/vcf-tstv
-rwxr-xr-x root/root      3353 2019-05-27 22:21 ./usr/bin/vcf-validator
-rwxr-xr-x root/root    698440 2019-05-27 22:21 ./usr/bin/vcftools
drwxr-xr-x root/root         0 2019-05-27 22:21 ./usr/share/
drwxr-xr-x root/root         0 2019-05-27 22:21 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-05-27 22:21 ./usr/share/doc/vcftools/
-rw-r--r-- root/root      1122 2019-05-27 17:03 ./usr/share/doc/vcftools/changelog.Debian.gz
-rw-r--r-- root/root      1961 2014-03-06 15:19 ./usr/share/doc/vcftools/changelog.gz
-rw-r--r-- root/root      1208 2012-11-02 11:17 ./usr/share/doc/vcftools/copyright
drwxr-xr-x root/root         0 2019-05-27 22:21 ./usr/share/doc/vcftools/examples/
-rw-r--r-- root/root      1685 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/annotate-test.vcf
-rw-r--r-- root/root      1376 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/annotate.out
-rw-r--r-- root/root       299 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/annotate.txt
-rw-r--r-- root/root      3107 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/annotate2.out
-rw-r--r-- root/root      1394 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/annotate3.out
-rw-r--r-- root/root       522 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/cmp-test-a-3.3.vcf
-rw-r--r-- root/root       638 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/cmp-test-a.vcf
-rw-r--r-- root/root       520 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/cmp-test-b-3.3.vcf
-rw-r--r-- root/root       636 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/cmp-test-b.vcf
-rw-r--r-- root/root      2633 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/cmp-test.out
-rw-r--r-- root/root      1180 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/concat-a.vcf
-rw-r--r-- root/root       674 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/concat-b.vcf
-rw-r--r-- root/root       972 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/concat-c.vcf
-rw-r--r-- root/root      2074 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/concat.out
-rw-r--r-- root/root      1038 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/consensus.fa
-rw-r--r-- root/root      1037 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/consensus.out
-rw-r--r-- root/root      1037 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/consensus.out2
-rw-r--r-- root/root       275 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/consensus.vcf
-rw-r--r-- root/root      2312 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/contrast.out.gz
-rw-r--r-- root/root      8723 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/contrast.vcf.gz
-rw-r--r-- root/root      1524 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/fill-an-ac.out
-rw-r--r-- root/root      1800 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/filters.txt.gz
-rw-r--r-- root/root      1924 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/fix-ploidy.out
-rw-r--r-- root/root        42 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/fix-ploidy.samples
-rw-r--r-- root/root       223 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/fix-ploidy.txt
-rw-r--r-- root/root      3335 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/fix-ploidy.vcf.gz
-rw-r--r-- root/root       564 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/floats.vcf
-rw-r--r-- root/root        48 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/indel-stats.out
-rw-r--r-- root/root        24 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/indel-stats.tab
-rw-r--r-- root/root       523 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/indel-stats.vcf
-rw-r--r-- root/root      2086 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/invalid-4.0.vcf
-rw-r--r-- root/root      1120 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/isec-n2-test.vcf.out
-rw-r--r-- root/root       965 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/merge-test-a.vcf
-rw-r--r-- root/root      1020 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/merge-test-b.vcf
-rw-r--r-- root/root       798 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/merge-test-c.vcf
-rw-r--r-- root/root      2240 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/merge-test.vcf.out
-rw-r--r-- root/root       230 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/parse-test.vcf
-rwxr-xr-x root/root      1439 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/perl-api-1.pl
-rw-r--r-- root/root       255 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/query-test.out
-rw-r--r-- root/root       638 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/shuffle-test.vcf
-rw-r--r-- root/root       522 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/subset.SNPs.out
-rw-r--r-- root/root       931 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/subset.indels.out
-rw-r--r-- root/root      1229 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/subset.vcf
-rw-r--r-- root/root      1612 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/valid-3.3.vcf
-rw-r--r-- root/root      2182 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/valid-4.0.vcf
-rw-r--r-- root/root       465 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/valid-4.0.vcf.stats.gz
-rw-r--r-- root/root      2999 2014-03-06 15:19 ./usr/share/doc/vcftools/examples/valid-4.1.vcf
drwxr-xr-x root/root         0 2019-05-27 22:21 ./usr/share/lintian/
drwxr-xr-x root/root         0 2019-05-27 22:21 ./usr/share/lintian/overrides/
-rw-r--r-- root/root       246 2014-04-04 08:46 ./usr/share/lintian/overrides/vcftools
drwxr-xr-x root/root         0 2019-05-27 22:21 ./usr/share/man/
drwxr-xr-x root/root         0 2019-05-27 22:21 ./usr/share/man/man1/
-rw-r--r-- root/root       272 2019-05-27 22:21 ./usr/share/man/man1/fill-aa.1.gz
-rw-r--r-- root/root       241 2019-05-27 22:21 ./usr/share/man/man1/fill-an-ac.1.gz
-rw-r--r-- root/root       664 2019-05-27 22:21 ./usr/share/man/man1/fill-fs.1.gz
-rw-r--r-- root/root       654 2019-05-27 22:21 ./usr/share/man/man1/fill-ref-md5.1.gz
-rw-r--r-- root/root       280 2019-05-27 22:21 ./usr/share/man/man1/fill-rsIDs.1.gz
-rw-r--r-- root/root      1281 2019-05-27 22:21 ./usr/share/man/man1/vcf-annotate.1.gz
-rw-r--r-- root/root       852 2019-05-27 22:21 ./usr/share/man/man1/vcf-compare.1.gz
-rw-r--r-- root/root       518 2019-05-27 22:21 ./usr/share/man/man1/vcf-concat.1.gz
-rw-r--r-- root/root       277 2019-05-27 22:21 ./usr/share/man/man1/vcf-consensus.1.gz
-rw-r--r-- root/root       724 2019-05-27 22:21 ./usr/share/man/man1/vcf-contrast.1.gz
-rw-r--r-- root/root       389 2019-05-27 22:21 ./usr/share/man/man1/vcf-convert.1.gz
-rw-r--r-- root/root       651 2019-05-27 22:21 ./usr/share/man/man1/vcf-fix-ploidy.1.gz
-rw-r--r-- root/root       366 2019-05-27 22:21 ./usr/share/man/man1/vcf-indel-stats.1.gz
-rw-r--r-- root/root       956 2019-05-27 22:21 ./usr/share/man/man1/vcf-isec.1.gz
-rw-r--r-- root/root       599 2019-05-27 22:21 ./usr/share/man/man1/vcf-merge.1.gz
-rw-r--r-- root/root       551 2019-05-27 22:21 ./usr/share/man/man1/vcf-phased-join.1.gz
-rw-r--r-- root/root       500 2019-05-27 22:21 ./usr/share/man/man1/vcf-query.1.gz
-rw-r--r-- root/root       343 2019-05-27 22:21 ./usr/share/man/man1/vcf-shuffle-cols.1.gz
-rw-r--r-- root/root       254 2019-05-27 22:21 ./usr/share/man/man1/vcf-sort.1.gz
-rw-r--r-- root/root       685 2019-05-27 22:21 ./usr/share/man/man1/vcf-stats.1.gz
-rw-r--r-- root/root       558 2019-05-27 22:21 ./usr/share/man/man1/vcf-subset.1.gz
-rw-r--r-- root/root       280 2019-05-27 22:21 ./usr/share/man/man1/vcf-to-tab.1.gz
-rw-r--r-- root/root       227 2019-05-27 22:21 ./usr/share/man/man1/vcf-tstv.1.gz
-rw-r--r-- root/root       307 2019-05-27 22:21 ./usr/share/man/man1/vcf-validator.1.gz
-rw-r--r-- root/root      6157 2019-05-27 22:21 ./usr/share/man/man1/vcftools.1.gz
drwxr-xr-x root/root         0 2019-05-27 22:21 ./usr/share/perl5/
-rw-r--r-- root/root      6731 2019-05-27 22:21 ./usr/share/perl5/FaSlice.pm
-rw-r--r-- root/root    102530 2019-05-27 22:21 ./usr/share/perl5/Vcf.pm
-rw-r--r-- root/root     18147 2019-05-27 22:21 ./usr/share/perl5/VcfStats.pm


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 44764
Build-Time: 207
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 80
Job: vcftools_0.1.12+dfsg-1+deb8u1
Machine Architecture: armhf
Package: vcftools
Package-Time: 309
Source-Version: 0.1.12+dfsg-1+deb8u1
Space: 44764
Status: successful
Version: 0.1.12+dfsg-1+deb8u1
--------------------------------------------------------------------------------
Finished at 2019-05-27T22:21:57Z
Build needed 00:05:09, 44764k disk space