unanimity →
3.3.0+dfsg-2.1 →
armhf → 2020-05-29 11:23:42
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| unanimity 3.3.0+dfsg-2.1 (armhf) Fri, 29 May 2020 11:13:16 +0000 |
+==============================================================================+
Package: unanimity
Version: 3.3.0+dfsg-2.1
Source Version: 3.3.0+dfsg-2.1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-669079e6-71a1-4379-afed-8014ea99b0eb' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.8 MB]
Fetched 24.5 MB in 9s (2614 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'unanimity' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/unanimity.git
Please use:
git clone https://salsa.debian.org/med-team/unanimity.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3612 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main unanimity 3.3.0+dfsg-2.1 (dsc) [2292 B]
Get:2 http://172.17.0.1/private bullseye-staging/main unanimity 3.3.0+dfsg-2.1 (tar) [3601 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main unanimity 3.3.0+dfsg-2.1 (diff) [9244 B]
Fetched 3612 kB in 1s (5311 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/unanimity-bAI8yU/unanimity-3.3.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/unanimity-bAI8yU' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-koqocW/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-koqocW/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-koqocW/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (8790 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 22 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (62.3 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12233 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 12~), dh-python, cmake, swig, python-setuptools, python-all-dev, python-numpy, libboost-dev, libhts-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libseqan2-dev, pandoc
Filtered Build-Depends: debhelper (>= 12~), dh-python, cmake, swig, python-setuptools, python-all-dev, python-numpy, libboost-dev, libhts-dev, libpbbam-dev (>= 0.18.0+dfsg-1~), libpbcopper-dev, libseqan2-dev, pandoc
dpkg-deb: building package 'sbuild-build-depends-unanimity-dummy' in '/<<BUILDDIR>>/resolver-koqocW/apt_archive/sbuild-build-depends-unanimity-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-unanimity-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ Sources [579 B]
Get:5 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ Packages [665 B]
Fetched 2577 B in 0s (10.9 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install unanimity build dependencies (apt-based resolver)
---------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libblas3 libboost-dev libboost1.67-dev libbrotli1 libbsd0 libcroco3
libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
libgssapi-krb5-2 libhts-dev libhts3 libicu63 libjsoncpp1 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblzma-dev libmagic-mgc
libmagic1 libmpdec2 libncurses6 libnghttp2-14 libpbbam-dev libpbbam1.0.6
libpbcopper-dev libpbcopper1.3.0 libpipeline1 libprocps8 libpsl5
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.8-minimal
libpython3.8-stdlib librhash0 librtmp1 libseqan2-dev libsigsegv2 libssh2-1
libssl-dev libssl1.1 libsub-override-perl libtinfo5 libtool libuchardet0
libuv1 libxml2 m4 man-db mime-support pandoc pandoc-data po-debconf procps
python python-all python-all-dev python-dev python-minimal python-numpy
python-pkg-resources python-setuptools python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.8 python3.8-minimal sensible-utils
swig swig4.0 zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cmake-doc ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip libboost-doc libboost1.67-doc
libboost-atomic1.67-dev libboost-chrono1.67-dev libboost-container1.67-dev
libboost-context1.67-dev libboost-contract1.67-dev
libboost-coroutine1.67-dev libboost-date-time1.67-dev
libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
krb5-doc krb5-user liblzma-doc libssl-doc libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
texlive-latex-recommended texlive-xetex texlive-luatex pandoc-citeproc
texlive-latex-extra context wkhtmltopdf librsvg2-bin ghc nodejs php ruby
r-base-core libjs-mathjax node-katex libmail-box-perl python-doc python-tk
gfortran python-numpy-dbg python-numpy-doc python-setuptools-doc python2-doc
python2.7-doc binfmt-support python3-doc python3-tk python3-venv
python3.8-venv python3.8-doc swig-doc swig-examples swig4.0-examples
swig4.0-doc
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cmake cmake-data
debhelper dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13
libblas3 libboost-dev libboost1.67-dev libbrotli1 libbsd0 libcroco3
libcurl3-gnutls libcurl4 libdebhelper-perl libdeflate0 libelf1 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libgfortran5 libglib2.0-0
libgssapi-krb5-2 libhts-dev libhts3 libicu63 libjsoncpp1 libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack3 liblzma-dev libmagic-mgc
libmagic1 libmpdec2 libncurses6 libnghttp2-14 libpbbam-dev libpbbam1.0.6
libpbcopper-dev libpbcopper1.3.0 libpipeline1 libprocps8 libpsl5
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.8-minimal
libpython3.8-stdlib librhash0 librtmp1 libseqan2-dev libsigsegv2 libssh2-1
libssl-dev libssl1.1 libsub-override-perl libtinfo5 libtool libuchardet0
libuv1 libxml2 m4 man-db mime-support pandoc pandoc-data po-debconf procps
python python-all python-all-dev python-dev python-minimal python-numpy
python-pkg-resources python-setuptools python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.8 python3.8-minimal
sbuild-build-depends-unanimity-dummy sensible-utils swig swig4.0 zlib1g-dev
0 upgraded, 115 newly installed, 0 to remove and 22 not upgraded.
Need to get 82.0 MB of archives.
After this operation, 473 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-koqocW/apt_archive ./ sbuild-build-depends-unanimity-dummy 0.invalid.0 [944 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-minimal armhf 2.7.18-1 [395 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf python2.7-minimal armhf 2.7.18-1 [1099 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf python2-minimal armhf 2.7.17-2 [41.4 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf python-minimal armhf 2.7.17-2 [21.1 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-stdlib armhf 2.7.18-1 [1821 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python2.7 armhf 2.7.18-1 [309 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython2-stdlib armhf 2.7.17-2 [20.9 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libpython-stdlib armhf 2.7.17-2 [20.9 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf python2 armhf 2.7.17-2 [41.7 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf python armhf 2.7.17-2 [22.9 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-minimal armhf 3.8.3-1 [751 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf python3.8-minimal armhf 3.8.3-1 [1629 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.8.2-3 [37.6 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-3 [68.1 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libpython3.8-stdlib armhf 3.8.3-1 [1600 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf python3.8 armhf 3.8.3-1 [416 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.8.2-3 [20.8 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.8.2-3 [63.7 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.16.3-3+rpi1 [1628 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.2-1 [294 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6.1 [255 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7+rpi1 [61.5 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7+rpi1 [112 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7+rpi1 [318 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7+rpi1 [135 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1 [53.9 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1 [286 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp1 armhf 1.7.4-3.1 [65.8 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.3.9-1 [133 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.35.0-2 [115 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.16.3-3+rpi1 [2653 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.1 [187 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.1-1 [14.9 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.2-1 [1158 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.1 [1012 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.2-2 [78.4 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.2-2 [145 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20200315 [91.6 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-2 [108 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-18 [8389 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2+b12 [4464 B]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.68.0-1 [284 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.6-1 [47.4 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-1+rpi1 [232 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.10.2-3 [319 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.10.2-3 [4796 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-2 [1602 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libpbcopper1.3.0 armhf 1.3.0+dfsg-3 [277 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libpbbam1.0.6 armhf 1.0.6+dfsg-2+rpi1 [565 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libssl-dev armhf 1.1.1g-1 [1573 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libpbbam-dev armhf 1.0.6+dfsg-2+rpi1 [86.1 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libpbcopper-dev armhf 1.3.0+dfsg-3 [149 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7 armhf 2.7.18-1 [882 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libpython2.7-dev armhf 2.7.18-1 [2069 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libpython2-dev armhf 2.7.17-2 [21.0 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libpython-dev armhf 2.7.17-2 [21.0 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libpython-all-dev armhf 2.7.17-2 [1068 B]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libseqan2-dev all 2.4.0+dfsg-12 [1220 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf pandoc-data all 2.5-3 [349 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf pandoc armhf 2.5-3+b1 [18.6 MB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python-all armhf 2.7.17-2 [1048 B]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf python2.7-dev armhf 2.7.18-1 [292 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python2-dev armhf 2.7.17-2 [1224 B]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python-dev armhf 2.7.17-2 [1196 B]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf python-all-dev armhf 2.7.17-2 [1072 B]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf python-pkg-resources all 44.0.0-3 [181 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python-numpy armhf 1:1.16.5-5 [1919 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python-setuptools all 44.0.0-3 [382 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf swig4.0 armhf 4.0.1-5 [1236 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf swig all 4.0.1-5 [329 kB]
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Unpacking sbuild-build-depends-unanimity-dummy (0.invalid.0) ...
Setting up libboost1.67-dev:armhf (1.67.0-18) ...
Setting up libpipeline1:armhf (1.5.2-2) ...
Setting up libkeyutils1:armhf (1.6.1-2) ...
Setting up libpsl5:armhf (0.21.0-1) ...
Setting up mime-support (3.64) ...
Setting up libmagic-mgc (1:5.38-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.64.2-1) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.1) ...
Setting up libbrotli1:armhf (1.0.7-6.1) ...
Setting up libnghttp2-14:armhf (1.40.0-1+b2) ...
Setting up libmagic1:armhf (1:5.38-5) ...
Setting up libdeflate0:armhf (1.6-1) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.38-5) ...
Setting up libicu63:armhf (63.2-3) ...
Setting up libkrb5support0:armhf (1.17-7+rpi1) ...
Setting up libseqan2-dev (2.4.0+dfsg-12) ...
Setting up libpython2.7-stdlib:armhf (2.7.18-1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libblas3:armhf (3.9.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libuv1:armhf (1.35.0-2) ...
Setting up libexpat1-dev:armhf (2.2.9-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b1) ...
Setting up libncurses6:armhf (6.2-1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libssl-dev:armhf (1.1.1g-1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libk5crypto3:armhf (1.17-7+rpi1) ...
Setting up libgfortran5:armhf (10.1.0-1+rpi1) ...
Setting up liblzma-dev:armhf (5.2.4-1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up librhash0:armhf (1.3.9-1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.8.0-2.1) ...
Setting up cmake-data (3.16.3-3+rpi1) ...
Setting up libkrb5-3:armhf (1.17-7+rpi1) ...
Setting up libboost-dev:armhf (1.67.0.2+b12) ...
Setting up libmpdec2:armhf (2.4.2-3) ...
Setting up pandoc-data (2.5-3) ...
Setting up swig4.0 (4.0.1-5) ...
Setting up libpython3.8-stdlib:armhf (3.8.3-1) ...
Setting up python3.8 (3.8.3-1) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.2-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libpbcopper1.3.0 (1.3.0+dfsg-3) ...
Setting up libxml2:armhf (2.9.10+dfsg-5) ...
Setting up libprocps8:armhf (2:3.3.16-5) ...
Setting up libjsoncpp1:armhf (1.7.4-3.1) ...
Setting up libpython3-stdlib:armhf (3.8.2-3) ...
Setting up libfile-stripnondeterminism-perl (1.8.1-1) ...
Setting up libpython2.7:armhf (2.7.18-1) ...
Setting up liblapack3:armhf (3.9.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpython2.7-dev:armhf (2.7.18-1) ...
Setting up swig (4.0.1-5) ...
Setting up python2.7 (2.7.18-1) ...
Setting up libtool (2.4.6-14) ...
Setting up libpython2-stdlib:armhf (2.7.17-2) ...
Setting up libarchive13:armhf (3.4.2-1) ...
Setting up m4 (1.4.18-4) ...
Setting up python3 (3.8.2-3) ...
Setting up python2 (2.7.17-2) ...
Setting up libpython-stdlib:armhf (2.7.17-2) ...
Setting up pandoc (2.5-3+b1) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libgssapi-krb5-2:armhf (1.17-7+rpi1) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up libpbcopper-dev (1.3.0+dfsg-3) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.8.1-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-5) ...
Setting up procps (2:3.3.16-5) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libcurl4:armhf (7.68.0-1) ...
Setting up libpython2-dev:armhf (2.7.17-2) ...
Setting up python3-lib2to3 (3.8.2-2) ...
Setting up python (2.7.17-2) ...
Setting up python2.7-dev (2.7.18-1) ...
Setting up automake (1:1.16.2-1) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up python3-distutils (3.8.2-2) ...
Setting up dh-python (4.20200315) ...
Setting up gettext (0.19.8.1-10) ...
Setting up python2-dev (2.7.17-2) ...
Setting up python-pkg-resources (44.0.0-3) ...
Setting up libcurl3-gnutls:armhf (7.68.0-1) ...
Setting up python-all (2.7.17-2) ...
Setting up man-db (2.9.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython-dev:armhf (2.7.17-2) ...
Setting up python-setuptools (44.0.0-3) ...
Setting up cmake (3.16.3-3+rpi1) ...
Setting up python-dev (2.7.17-2) ...
Setting up libhts3:armhf (1.10.2-3) ...
Setting up libpython-all-dev:armhf (2.7.17-2) ...
Setting up python-numpy (1:1.16.5-5) ...
Setting up po-debconf (1.0.21) ...
Setting up libhts-dev:armhf (1.10.2-3) ...
Setting up libpbbam1.0.6:armhf (1.0.6+dfsg-2+rpi1) ...
Setting up libpbbam-dev (1.0.6+dfsg-2+rpi1) ...
Setting up python-all-dev (2.7.17-2) ...
Setting up debhelper (13.1) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-unanimity-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-8+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.34-8+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-12+rpi1 gcc-9_9.3.0-12+rpi1 libc6-dev_2.30-8+rpi1 libstdc++-9-dev_9.3.0-12+rpi1 libstdc++6_10.1.0-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.4 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8+rpi1 binutils-arm-linux-gnueabihf_2.34-8+rpi1 binutils-common_2.34-8+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.35.1-5 build-essential_12.8 bzip2_1.0.8-2 cmake_3.16.3-3+rpi1 cmake-data_3.16.3-3+rpi1 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-12+rpi1 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.1 debianutils_4.9.1 dh-autoreconf_19 dh-python_4.20200315 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.1-5 file_1:5.38-5 findutils_4.7.0-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-12+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-10-base_10.1.0-1+rpi1 gcc-9_9.3.0-12+rpi1 gcc-9-base_9.3.0-12+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-3 libacl1_2.2.53-8 libapt-pkg6.0_2.1.4 libarchive-zip-perl_1.68-1 libarchive13_3.4.2-1 libasan5_9.3.0-12+rpi1 libassuan0_2.5.3-7 libatomic1_10.1.0-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3 libbinutils_2.34-8+rpi1 libblas3_3.9.0-2 libblkid1_2.35.1-5 libboost-dev_1.67.0.2+b12 libboost1.67-dev_1.67.0-18 libbrotli1_1.0.7-6.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.30-8+rpi1 libc-dev-bin_2.30-8+rpi1 libc6_2.30-8+rpi1 libc6-dev_2.30-8+rpi1 libcap-ng0_0.7.9-2.1+b1 libcap2_1:2.34-2 libcap2-bin_1:2.34-2 libcc1-0_10.1.0-1+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.34-8+rpi1 libctf0_2.34-8+rpi1 libcurl3-gnutls_7.68.0-1 libcurl4_7.68.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.252 libdebhelper-perl_13.1 libdeflate0_1.6-1 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.35.1-5 libffi7_3.3-4 libfile-stripnondeterminism-perl_1.8.1-1 libgcc-9-dev_9.3.0-12+rpi1 libgcc-s1_10.1.0-1+rpi1 libgcc1_1:10.1.0-1+rpi1 libgcrypt20_1.8.5-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_10.1.0-1+rpi1 libglib2.0-0_2.64.2-1 libgmp10_2:6.2.0+dfsg-4 libgnutls30_3.6.13-2 libgomp1_10.1.0-1+rpi1 libgpg-error0_1.37-1 libgssapi-krb5-2_1.17-7+rpi1 libhogweed5_3.5.1+really3.5.1-2 libhts-dev_1.10.2-3 libhts3_1.10.2-3 libicu63_63.2-3 libidn2-0_2.3.0-1 libisl22_0.22.1-1 libjsoncpp1_1.7.4-3.1 libk5crypto3_1.17-7+rpi1 libkeyutils1_1.6.1-2 libkrb5-3_1.17-7+rpi1 libkrb5support0_1.17-7+rpi1 libksba8_1.3.5-2 liblapack3_3.9.0-2 libldap-2.4-2_2.4.50+dfsg-1 libldap-common_2.4.50+dfsg-1 liblz4-1_1.9.2-2 liblzma-dev_5.2.4-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.35.1-5 libmpc3_1.1.0-1 libmpdec2_2.4.2-3 libmpfr6_4.0.2-1 libncurses6_6.2-1 libncursesw6_6.2-1 libnettle7_3.5.1+really3.5.1-2 libnghttp2-14_1.40.0-1+b2 libnpth0_1.6-1 libp11-kit0_0.23.20-1 libpam-cap_1:2.34-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpbbam-dev_1.0.6+dfsg-2+rpi1 libpbbam1.0.6_1.0.6+dfsg-2+rpi1 libpbcopper-dev_1.3.0+dfsg-3 libpbcopper1.3.0_1.3.0+dfsg-3 libpcre2-8-0_10.34-7 libpcre3_2:8.39-12 libperl5.30_5.30.0-10 libpipeline1_1.5.2-2 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1 libpython-all-dev_2.7.17-2 libpython-dev_2.7.17-2 libpython-stdlib_2.7.17-2 libpython2-dev_2.7.17-2 libpython2-stdlib_2.7.17-2 libpython2.7_2.7.18-1 libpython2.7-dev_2.7.18-1 libpython2.7-minimal_2.7.18-1 libpython2.7-stdlib_2.7.18-1 libpython3-stdlib_3.8.2-3 libpython3.8-minimal_3.8.3-1 libpython3.8-stdlib_3.8.3-1 libreadline7_7.0-5 libreadline8_8.0-4 librhash0_1.3.9-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.4.3-1+rpi1 libselinux1_3.0-1+b1 libsemanage-common_3.0-1 libsemanage1_3.0-1+b1 libsepol1_3.0-1 libseqan2-dev_2.4.0+dfsg-12 libsigsegv2_2.12-2 libsmartcols1_2.35.1-5 libsqlite3-0_3.31.1-5 libss2_1.45.6-1 libssh2-1_1.8.0-2.1 libssl-dev_1.1.1g-1 libssl1.1_1.1.1g-1 libstdc++-9-dev_9.3.0-12+rpi1 libstdc++6_10.1.0-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_245.5-3+rpi1 libtasn1-6_4.16.0-2 libtinfo5_6.2-1 libtinfo6_6.2-1 libtool_2.4.6-14 libubsan1_10.1.0-1+rpi1 libuchardet0_0.0.6-3 libudev1_245.5-3+rpi1 libunistring2_0.9.10-2 libuuid1_2.35.1-5 libuv1_1.35.0-2 libxml2_2.9.10+dfsg-5 libzstd1_1.4.4+dfsg-3+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-2 man-db_2.9.1-1 mawk_1.3.4.20200120-2 mime-support_3.64 mount_2.35.1-5 ncurses-base_6.2-1 ncurses-bin_6.2-1 netbase_6.1 pandoc_2.5-3+b1 pandoc-data_2.5-3 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.0-10 perl-base_5.30.0-10 perl-modules-5.30_5.30.0-10 pinentry-curses_1.1.0-4 po-debconf_1.0.21 procps_2:3.3.16-5 python_2.7.17-2 python-all_2.7.17-2 python-all-dev_2.7.17-2 python-dev_2.7.17-2 python-minimal_2.7.17-2 python-numpy_1:1.16.5-5 python-pkg-resources_44.0.0-3 python-setuptools_44.0.0-3 python2_2.7.17-2 python2-dev_2.7.17-2 python2-minimal_2.7.17-2 python2.7_2.7.18-1 python2.7-dev_2.7.18-1 python2.7-minimal_2.7.18-1 python3_3.8.2-3 python3-distutils_3.8.2-2 python3-lib2to3_3.8.2-2 python3-minimal_3.8.2-3 python3.8_3.8.3-1 python3.8-minimal_3.8.3-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-unanimity-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 swig_4.0.1-5 swig4.0_4.0.1-5 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 util-linux_2.35.1-5 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Feb 6 07:18:37 2019 UTC
gpgv: using RSA key 3AFA757FAC6EA11D2FF45DF088D24287A2D898B1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./unanimity_3.3.0+dfsg-2.1.dsc
dpkg-source: info: extracting unanimity in /<<BUILDDIR>>/unanimity-3.3.0+dfsg
dpkg-source: info: unpacking unanimity_3.3.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking unanimity_3.3.0+dfsg-2.1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying add_missing_library_files
dpkg-source: info: applying git-version.patch
dpkg-source: info: applying no-static-linking.patch
dpkg-source: info: applying do_not_refer_to_non-existing_images.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-669079e6-71a1-4379-afed-8014ea99b0eb
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package unanimity
dpkg-buildpackage: info: source version 3.3.0+dfsg-2.1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean \
--package=unanimity \
--no-package=python-consensuscore2 \
--buildsystem=cmake \
--builddirectory=build
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg'
dh_auto_clean
rm -f config-main
rm -f doc/JULIET.html doc/PBCCS.html
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dh_clean -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build
dh clean \
--package=python-consensuscore2 \
--no-package=unanimity \
--with python2 \
--buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg'
dh_auto_clean
I: pybuild base:217: python2.7 setup.py clean
running clean
removing '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/.pybuild/cpython2_2.7_consensuscore2/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
rm -f config-main
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make[1]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg'
dh_autoreconf_clean -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild
dh_clean -O--package=python-consensuscore2 -O--no-package=unanimity -O--buildsystem=pybuild
debian/rules build-arch
dh build-arch \
--package=unanimity \
--no-package=python-consensuscore2 \
--buildsystem=cmake \
--builddirectory=build
dh_update_autotools_config -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build
dh_autoreconf -a -O--package=unanimity -O--no-package=python-consensuscore2 -O--buildsystem=cmake -O--builddirectory=build
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg'
dh_auto_configure -- \
-DCMAKE_EXE_LINKER_FLAGS=-pthread \
-DUNY_build_tests=OFF \
-DPYTHON_SWIG=ON \
-DZLIB_INCLUDE_DIRS=/usr/include \
-DBoost_INCLUDE_DIRS=/usr/include \
-DPacBioBAM_INCLUDE_DIRS=/usr/include \
-DPacBioBAM_LIBRARIES=/usr/lib/arm-linux-gnueabihf/libpbbam.so \
-DSEQAN_INCLUDE_DIRS=/usr/include \
-Dpbcopper_INCLUDE_DIRS=/usr/include \
-Dpbcopper_LIBRARIES=/usr/lib/arm-linux-gnueabihf/libpbcopper.a
cd build && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_EXE_LINKER_FLAGS=-pthread -DUNY_build_tests=OFF -DPYTHON_SWIG=ON -DZLIB_INCLUDE_DIRS=/usr/include -DBoost_INCLUDE_DIRS=/usr/include -DPacBioBAM_INCLUDE_DIRS=/usr/include -DPacBioBAM_LIBRARIES=/usr/lib/arm-linux-gnueabihf/libpbbam.so -DSEQAN_INCLUDE_DIRS=/usr/include -Dpbcopper_INCLUDE_DIRS=/usr/include -Dpbcopper_LIBRARIES=/usr/lib/arm-linux-gnueabihf/libpbcopper.a ..
-- The CXX compiler identification is GNU 9.3.0
-- The C compiler identification is GNU 9.3.0
-- Check for working CXX compiler: /usr/bin/c++
-- Check for working CXX compiler: /usr/bin/c++ -- works
-- Detecting CXX compiler ABI info
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-- Found PythonInterp: /usr/bin/python (found version "2.7.18")
-- Configuring done
-- Generating done
CMake Warning:
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CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
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cd build && make -j4 "INSTALL=install --strip-program=true"
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/usr/bin/cmake -E cmake_progress_start /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/CMakeFiles /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/CMakeFiles/progress.marks
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cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/cc2.dir/DependInfo.cmake --color=
make[3]: Entering directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<BUILDDIR>>/unanimity-3.3.0+dfsg /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src/CMakeFiles/unanimity.dir/DependInfo.cmake --color=
Scanning dependencies of target unanimity
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[ 1%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Consensus.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Consensus.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Consensus.cpp
[ 2%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp
[ 3%] Building CXX object src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Filters.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -std=c++14 -o CMakeFiles/unanimity.dir/genomicconsensus/experimental/Filters.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Filters.cpp
Scanning dependencies of target cc2
make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
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[ 4%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/UnanimityGitHash.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/__/generated/UnanimityGitHash.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated/UnanimityGitHash.cpp
[ 6%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/UnanimityVersion.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/__/generated/UnanimityVersion.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated/UnanimityVersion.cpp
[ 7%] Building CXX object src/CMakeFiles/cc2.dir/__/generated/ModelInternalInitializer.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/__/generated/ModelInternalInitializer.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated/ModelInternalInitializer.cpp
[ 8%] Building CXX object src/CMakeFiles/cc2.dir/align/AffineAlignment.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/AffineAlignment.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/AffineAlignment.cpp
In file included from /usr/include/pbcopper/data/ReadId.h:13,
from /usr/include/pbcopper/data/Read.h:19,
from /usr/include/pbcopper/data/MappedRead.h:10,
from /usr/include/pbbam/BamRecord.h:19,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/IPoaModel.h:8,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/arrow/ArrowModel.h:5,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp:8:
/usr/include/pbcopper/data/Interval.h:24:7: error: redefinition of ‘class PacBio::Data::Interval’
24 | class Interval
| ^~~~~~~~
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/ReferenceWindow.h:10,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/Consensus.h:10,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/WindowResult.h:7,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/IConsensusModel.h:5,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/ConsensusModelFactory.h:9,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/ConsensusModelFactory.cpp:3:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Interval.h:20:7: note: previous definition of ‘class PacBio::Data::Interval’
20 | class Interval
| ^~~~~~~~
make[3]: *** [src/CMakeFiles/unanimity.dir/build.make:79: src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/ConsensusModelFactory.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
[ 9%] Building CXX object src/CMakeFiles/cc2.dir/align/AlignConfig.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/AlignConfig.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/AlignConfig.cpp
[ 11%] Building CXX object src/CMakeFiles/cc2.dir/align/BandedChainAlignment.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/BandedChainAlignment.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/BandedChainAlignment.cpp
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/ReferenceWindow.h:10,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/Settings.h:12,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/Filters.h:10,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Filters.cpp:3:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Interval.h:20:7: error: redefinition of ‘class PacBio::Data::Interval’
20 | class Interval
| ^~~~~~~~
In file included from /usr/include/pbcopper/data/ReadId.h:13,
from /usr/include/pbcopper/data/Read.h:19,
from /usr/include/pbcopper/data/MappedRead.h:10,
from /usr/include/pbbam/BamRecord.h:19,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/Filters.h:7,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Filters.cpp:3:
/usr/include/pbcopper/data/Interval.h:24:7: note: previous definition of ‘class PacBio::Data::Interval’
24 | class Interval
| ^~~~~~~~
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/Settings.h:12,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/Filters.h:10,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/genomicconsensus/experimental/Filters.cpp:3:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/ReferenceWindow.h: In member function ‘size_t PacBio::GenomicConsensus::experimental::ReferenceWindow::Start() const’:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/ReferenceWindow.h:25:48: error: ‘const class PacBio::Data::Interval’ has no member named ‘Left’
25 | size_t Start(void) const { return interval.Left(); }
| ^~~~
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/ReferenceWindow.h: In member function ‘size_t PacBio::GenomicConsensus::experimental::ReferenceWindow::End() const’:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/genomicconsensus/experimental/ReferenceWindow.h:26:46: error: ‘const class PacBio::Data::Interval’ has no member named ‘Right’
26 | size_t End(void) const { return interval.Right(); }
| ^~~~~
[ 12%] Building CXX object src/CMakeFiles/cc2.dir/align/LinearAlignment.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/LinearAlignment.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/LinearAlignment.cpp
[ 13%] Building CXX object src/CMakeFiles/cc2.dir/align/PairwiseAlignment.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/align/PairwiseAlignment.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/PairwiseAlignment.cpp
In file included from /usr/include/c++/9/vector:72,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/align/BandedChainAlignment.h:10,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/BandedChainAlignment.cpp:3:
/usr/include/c++/9/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const PacBio::Align::Seed&}; _Tp = PacBio::Align::Seed; _Alloc = std::allocator<PacBio::Align::Seed>]’:
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::Align::Seed>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector<PacBio::Align::Seed>::iterator’ {aka ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’} changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/align/BandedChainAlignment.h:10,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/align/BandedChainAlignment.cpp:3:
/usr/include/c++/9/bits/stl_vector.h: In member function ‘std::vector<PacBio::Align::Seed> PacBio::Align::Internal::BandedChainAlignerImpl::MergeSeeds(const std::vector<PacBio::Align::Seed>&)’:
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<PacBio::Align::Seed*, std::vector<PacBio::Align::Seed> >’ changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
[ 14%] Building CXX object src/CMakeFiles/cc2.dir/matrix/BasicDenseMatrix.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/matrix/BasicDenseMatrix.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/matrix/BasicDenseMatrix.cpp
[ 16%] Building CXX object src/CMakeFiles/cc2.dir/matrix/ScaledMatrix.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/matrix/ScaledMatrix.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/matrix/ScaledMatrix.cpp
make[3]: *** [src/CMakeFiles/unanimity.dir/build.make:92: src/CMakeFiles/unanimity.dir/genomicconsensus/experimental/Filters.cpp.o] Error 1
make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
make[2]: *** [CMakeFiles/Makefile2:182: src/CMakeFiles/unanimity.dir/all] Error 2
make[2]: *** Waiting for unfinished jobs....
[ 17%] Building CXX object src/CMakeFiles/cc2.dir/matrix/SparseMatrix.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/matrix/SparseMatrix.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/matrix/SparseMatrix.cpp
[ 18%] Building CXX object src/CMakeFiles/cc2.dir/models/MarginalModelForm.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/MarginalModelForm.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp
[ 19%] Building CXX object src/CMakeFiles/cc2.dir/models/P6C4NoCov_Model.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/P6C4NoCov_Model.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/P6C4NoCov_Model.cpp
[ 20%] Building CXX object src/CMakeFiles/cc2.dir/models/PwSnrAModelForm.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/PwSnrAModelForm.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrAModelForm.cpp
[ 22%] Building CXX object src/CMakeFiles/cc2.dir/models/PwSnrModelForm.cpp.o
cd /<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/src && /usr/bin/c++ -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/include -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build/generated -I/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/unanimity-3.3.0+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -Wno-unused-parameter -Wno-unused-variable -Wno-unused-local-typedefs -fPIC -std=c++14 -o CMakeFiles/cc2.dir/models/PwSnrModelForm.cpp.o -c /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrModelForm.cpp
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/P6C4NoCov_Model.cpp:15:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h: In member function ‘size_t PacBio::Consensus::Recursor<Derived>::FillAlphaBeta(const PacBio::Consensus::AbstractTemplate&, PacBio::Consensus::AbstractRecursor::M&, PacBio::Consensus::AbstractRecursor::M&, double) const’:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: error: no matching function for call to ‘max(long unsigned int, size_t)’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/memory:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/P6C4NoCov_Model.cpp:7:
/usr/include/c++/9/bits/stl_algobase.h:222:5: note: candidate: ‘template<class _Tp> constexpr const _Tp& std::max(const _Tp&, const _Tp&)’
222 | max(const _Tp& __a, const _Tp& __b)
| ^~~
/usr/include/c++/9/bits/stl_algobase.h:222:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/P6C4NoCov_Model.cpp:15:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’})
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/memory:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/P6C4NoCov_Model.cpp:7:
/usr/include/c++/9/bits/stl_algobase.h:268:5: note: candidate: ‘template<class _Tp, class _Compare> constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’
268 | max(const _Tp& __a, const _Tp& __b, _Compare __comp)
| ^~~
/usr/include/c++/9/bits/stl_algobase.h:268:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/P6C4NoCov_Model.cpp:15:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’})
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Read.h:5,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/consensus/ModelConfig.h:20,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/P6C4NoCov_Model.cpp:11:
/usr/include/c++/9/bits/stl_algo.h:3456:5: note: candidate: ‘template<class _Tp> constexpr _Tp std::max(std::initializer_list<_Tp>)’
3456 | max(initializer_list<_Tp> __l)
| ^~~
/usr/include/c++/9/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/P6C4NoCov_Model.cpp:15:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Read.h:5,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/consensus/ModelConfig.h:20,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/P6C4NoCov_Model.cpp:11:
/usr/include/c++/9/bits/stl_algo.h:3462:5: note: candidate: ‘template<class _Tp, class _Compare> constexpr _Tp std::max(std::initializer_list<_Tp>, _Compare)’
3462 | max(initializer_list<_Tp> __l, _Compare __comp)
| ^~~
/usr/include/c++/9/bits/stl_algo.h:3462:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/P6C4NoCov_Model.cpp:15:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h: In member function ‘size_t PacBio::Consensus::Recursor<Derived>::FillAlphaBeta(const PacBio::Consensus::AbstractTemplate&, PacBio::Consensus::AbstractRecursor::M&, PacBio::Consensus::AbstractRecursor::M&, double) const’:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: error: no matching function for call to ‘max(long unsigned int, size_t)’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/memory:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:7:
/usr/include/c++/9/bits/stl_algobase.h:222:5: note: candidate: ‘template<class _Tp> constexpr const _Tp& std::max(const _Tp&, const _Tp&)’
222 | max(const _Tp& __a, const _Tp& __b)
| ^~~
/usr/include/c++/9/bits/stl_algobase.h:222:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’})
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/memory:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:7:
/usr/include/c++/9/bits/stl_algobase.h:268:5: note: candidate: ‘template<class _Tp, class _Compare> constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’
268 | max(const _Tp& __a, const _Tp& __b, _Compare __comp)
| ^~~
/usr/include/c++/9/bits/stl_algobase.h:268:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’})
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Read.h:5,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/consensus/ModelConfig.h:20,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:11:
/usr/include/c++/9/bits/stl_algo.h:3456:5: note: candidate: ‘template<class _Tp> constexpr _Tp std::max(std::initializer_list<_Tp>)’
3456 | max(initializer_list<_Tp> __l)
| ^~~
/usr/include/c++/9/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Read.h:5,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/consensus/ModelConfig.h:20,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:11:
/usr/include/c++/9/bits/stl_algo.h:3462:5: note: candidate: ‘template<class _Tp, class _Compare> constexpr _Tp std::max(std::initializer_list<_Tp>, _Compare)’
3462 | max(initializer_list<_Tp> __l, _Compare __comp)
| ^~~
/usr/include/c++/9/bits/stl_algo.h:3462:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/MarginalModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
make[3]: *** [src/CMakeFiles/cc2.dir/build.make:222: src/CMakeFiles/cc2.dir/models/P6C4NoCov_Model.cpp.o] Error 1
make[3]: *** Waiting for unfinished jobs....
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrAModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h: In member function ‘size_t PacBio::Consensus::Recursor<Derived>::FillAlphaBeta(const PacBio::Consensus::AbstractTemplate&, PacBio::Consensus::AbstractRecursor::M&, PacBio::Consensus::AbstractRecursor::M&, double) const’:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: error: no matching function for call to ‘max(long unsigned int, size_t)’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/memory:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrAModelForm.cpp:7:
/usr/include/c++/9/bits/stl_algobase.h:222:5: note: candidate: ‘template<class _Tp> constexpr const _Tp& std::max(const _Tp&, const _Tp&)’
222 | max(const _Tp& __a, const _Tp& __b)
| ^~~
/usr/include/c++/9/bits/stl_algobase.h:222:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrAModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’})
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/memory:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrAModelForm.cpp:7:
/usr/include/c++/9/bits/stl_algobase.h:268:5: note: candidate: ‘template<class _Tp, class _Compare> constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’
268 | max(const _Tp& __a, const _Tp& __b, _Compare __comp)
| ^~~
/usr/include/c++/9/bits/stl_algobase.h:268:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrAModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’})
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Read.h:5,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/consensus/ModelConfig.h:20,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrAModelForm.cpp:11:
/usr/include/c++/9/bits/stl_algo.h:3456:5: note: candidate: ‘template<class _Tp> constexpr _Tp std::max(std::initializer_list<_Tp>)’
3456 | max(initializer_list<_Tp> __l)
| ^~~
/usr/include/c++/9/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrAModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Read.h:5,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/consensus/ModelConfig.h:20,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrAModelForm.cpp:11:
/usr/include/c++/9/bits/stl_algo.h:3462:5: note: candidate: ‘template<class _Tp, class _Compare> constexpr _Tp std::max(std::initializer_list<_Tp>, _Compare)’
3462 | max(initializer_list<_Tp> __l, _Compare __comp)
| ^~~
/usr/include/c++/9/bits/stl_algo.h:3462:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrAModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
make[3]: *** [src/CMakeFiles/cc2.dir/build.make:209: src/CMakeFiles/cc2.dir/models/MarginalModelForm.cpp.o] Error 1
make[3]: *** [src/CMakeFiles/cc2.dir/build.make:235: src/CMakeFiles/cc2.dir/models/PwSnrAModelForm.cpp.o] Error 1
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h: In member function ‘size_t PacBio::Consensus::Recursor<Derived>::FillAlphaBeta(const PacBio::Consensus::AbstractTemplate&, PacBio::Consensus::AbstractRecursor::M&, PacBio::Consensus::AbstractRecursor::M&, double) const’:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: error: no matching function for call to ‘max(long unsigned int, size_t)’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/memory:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrModelForm.cpp:7:
/usr/include/c++/9/bits/stl_algobase.h:222:5: note: candidate: ‘template<class _Tp> constexpr const _Tp& std::max(const _Tp&, const _Tp&)’
222 | max(const _Tp& __a, const _Tp& __b)
| ^~~
/usr/include/c++/9/bits/stl_algobase.h:222:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’})
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/memory:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrModelForm.cpp:7:
/usr/include/c++/9/bits/stl_algobase.h:268:5: note: candidate: ‘template<class _Tp, class _Compare> constexpr const _Tp& std::max(const _Tp&, const _Tp&, _Compare)’
268 | max(const _Tp& __a, const _Tp& __b, _Compare __comp)
| ^~~
/usr/include/c++/9/bits/stl_algobase.h:268:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: deduced conflicting types for parameter ‘const _Tp’ (‘long unsigned int’ and ‘size_t’ {aka ‘unsigned int’})
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Read.h:5,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/consensus/ModelConfig.h:20,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrModelForm.cpp:11:
/usr/include/c++/9/bits/stl_algo.h:3456:5: note: candidate: ‘template<class _Tp> constexpr _Tp std::max(std::initializer_list<_Tp>)’
3456 | max(initializer_list<_Tp> __l)
| ^~~
/usr/include/c++/9/bits/stl_algo.h:3456:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
In file included from /usr/include/c++/9/algorithm:62,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/data/Read.h:5,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/include/pacbio/consensus/ModelConfig.h:20,
from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrModelForm.cpp:11:
/usr/include/c++/9/bits/stl_algo.h:3462:5: note: candidate: ‘template<class _Tp, class _Compare> constexpr _Tp std::max(std::initializer_list<_Tp>, _Compare)’
3462 | max(initializer_list<_Tp> __l, _Compare __comp)
| ^~~
/usr/include/c++/9/bits/stl_algo.h:3462:5: note: template argument deduction/substitution failed:
In file included from /<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/PwSnrModelForm.cpp:18:
/<<BUILDDIR>>/unanimity-3.3.0+dfsg/src/models/../Recursor.h:711:91: note: mismatched types ‘std::initializer_list<_Tp>’ and ‘long unsigned int’
711 | std::max(100ul, static_cast<size_t>(0.5 + REBANDING_THRESHOLD * (I + 1) * (J + 1)));
| ^
make[3]: *** [src/CMakeFiles/cc2.dir/build.make:248: src/CMakeFiles/cc2.dir/models/PwSnrModelForm.cpp.o] Error 1
make[3]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
make[2]: *** [CMakeFiles/Makefile2:237: src/CMakeFiles/cc2.dir/all] Error 2
make[2]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
make[1]: *** [Makefile:133: all] Error 2
make[1]: Leaving directory '/<<BUILDDIR>>/unanimity-3.3.0+dfsg/build'
dh_auto_build: error: cd build && make -j4 "INSTALL=install --strip-program=true" returned exit code 2
make: *** [debian/rules:28: build-arch] Error 25
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-05-29T11:23:39Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 13616
Build-Time: 52
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 549
Job: unanimity_3.3.0+dfsg-2.1
Machine Architecture: armhf
Package: unanimity
Package-Time: 623
Source-Version: 3.3.0+dfsg-2.1
Space: 13616
Status: attempted
Version: 3.3.0+dfsg-2.1
--------------------------------------------------------------------------------
Finished at 2020-05-29T11:23:39Z
Build needed 00:10:23, 13616k disk space