tnseq-transit →
3.3.2-1 →
armhf → 2023-11-07 16:42:15
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| tnseq-transit 3.3.2-1 (armhf) Tue, 07 Nov 2023 16:37:30 +0000 |
+==============================================================================+
Package: tnseq-transit
Version: 3.3.2-1
Source Version: 3.3.2-1
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-1a0bdc6e-9d37-4d7a-80b1-071ec9c35da1' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/tnseq-transit-NMvZFV/resolver-AXBkIV' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.2 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.9 MB]
Fetched 29.1 MB in 5s (5550 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'tnseq-transit' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/tnseq-transit.git
Please use:
git clone https://salsa.debian.org/med-team/tnseq-transit.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 40.9 MB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main tnseq-transit 3.3.2-1 (dsc) [2380 B]
Get:2 http://172.17.4.1/private trixie-staging/main tnseq-transit 3.3.2-1 (tar) [40.9 MB]
Get:3 http://172.17.4.1/private trixie-staging/main tnseq-transit 3.3.2-1 (diff) [6852 B]
Fetched 40.9 MB in 5s (8710 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tnseq-transit-NMvZFV/tnseq-transit-3.3.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tnseq-transit-NMvZFV' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-sklearn, python3-statsmodels, python3-pubsub, bwa, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-sklearn, python3-statsmodels, python3-pubsub, bwa, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [804 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [825 B]
Fetched 2238 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils bwa debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dpkg-dev dwz file
fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lyx gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas3
libbrotli1 libbsd0 libdebhelper-perl libdeflate0 libdpkg-perl libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran5 libglib2.0-0 libgraphite2-3
libharfbuzz0b libicu72 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
liblcms2-2 liblerc4 libmagic-mgc libmagic1 libopenjp2-7 libpipeline1
libpng16-16 libproc2-0 libpython3-dev libpython3-stdlib libpython3.11
libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0
libraqm0 libsharpyuv0 libsub-override-perl libtcl8.6 libtiff6 libtk8.6
libtool libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data
libxau6 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1
libxss1 m4 mailcap man-db media-types mime-support po-debconf procps
python-matplotlib-data python3 python3-appdirs python3-attr python3-brotli
python3-contourpy python3-cycler python3-dateutil python3-decorator
python3-dev python3-distutils python3-fonttools python3-fs python3-joblib
python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-patsy
python3-pil python3-pil.imagetk python3-pkg-resources python3-pubsub
python3-pyparsing python3-scipy python3-setuptools python3-six
python3-sklearn python3-sklearn-lib python3-statsmodels
python3-statsmodels-lib python3-sympy python3-threadpoolctl python3-tk
python3-tz python3-ufolib2 python3-unicodedata2 python3.11 python3.11-dev
python3.11-minimal sensible-utils tk8.6-blt2.5 unicode-data x11-common
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo samtools dh-make flit
python3-build python3-installer python3-wheel debian-keyring gettext-doc
libasprintf-dev libgettextpo-dev groff git bzr low-memory-monitor
libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl python3-doc python3-venv python-attr-doc python-cycler-doc
python-lxml-doc cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript
gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python3-cairocffi
python3-gi python3-gi-cairo python3-gobject python3-pyqt5 python3-sip
python3-tornado texlive-extra-utils texlive-latex-extra python-mpmath-doc
python3-gmpy2 gfortran python3-pytest python-pandas-doc python-patsy-doc
python-pil-doc python-pyparsing-doc python-scipy-doc python-setuptools-doc
python3-dap python-sklearn-doc python-statsmodels-doc texlive-fonts-extra
python-sympy-doc tix python3-tk-dbg python3.11-venv python3.11-doc
binfmt-support
Recommended packages:
libalgorithm-merge-perl curl | wget | lynx libfile-fcntllock-perl
libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs
javascript-common libltdl-dev libmail-sendmail-perl psmisc python3-pytest
python3-simplejson python3-psutil python3-bs4 python3-html5lib
python3-bottleneck python3-numexpr python3-odf python3-openpyxl
python3-tables python3-jinja2 python3-olefile python3-nose python3-colorama
python3-cvxopt isympy-common ca-certificates
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils bwa debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core fonts-dejavu-mono fonts-lyx gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0
libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu72
libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4
libmagic-mgc libmagic1 libopenjp2-7 libpipeline1 libpng16-16 libproc2-0
libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev
libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0
libsharpyuv0 libsub-override-perl libtcl8.6 libtiff6 libtk8.6 libtool
libuchardet0 libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4
mailcap man-db media-types mime-support po-debconf procps
python-matplotlib-data python3 python3-appdirs python3-attr python3-brotli
python3-contourpy python3-cycler python3-dateutil python3-decorator
python3-dev python3-distutils python3-fonttools python3-fs python3-joblib
python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-patsy
python3-pil python3-pil.imagetk python3-pkg-resources python3-pubsub
python3-pyparsing python3-scipy python3-setuptools python3-six
python3-sklearn python3-sklearn-lib python3-statsmodels
python3-statsmodels-lib python3-sympy python3-threadpoolctl python3-tk
python3-tz python3-ufolib2 python3-unicodedata2 python3.11 python3.11-dev
python3.11-minimal sbuild-build-depends-main-dummy sensible-utils
tk8.6-blt2.5 unicode-data x11-common zlib1g-dev
The following packages will be upgraded:
dpkg-dev libdpkg-perl
2 upgraded, 145 newly installed, 0 to remove and 8 not upgraded.
1 not fully installed or removed.
Need to get 108 MB/110 MB of archives.
After this operation, 462 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.6-3 [800 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.6-3 [1674 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.4-5 [26.2 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf mailcap all 3.70+nmu1 [32.0 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.6-3 [1679 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.6-3 [586 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.4-5 [9200 B]
Get:12 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.4-5 [26.2 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-5 [80.8 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libproc2-0 armhf 2:4.0.4-2 [54.9 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf procps armhf 2:4.0.4-2 [848 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf bwa armhf 0.7.17-7 [196 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.7 [82.1 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.7 [956 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf python3-distutils all 3.11.5-1 [131 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-2 [241 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-2 [468 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20231025 [107 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf fonts-lyx all 2.3.7-1 [186 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.5.0-2 [130 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-5+rpi1 [247 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.0-2+rpi1 [1249 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libjs-sphinxdoc all 5.3.0-7 [131 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [24.4 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf liblcms2-2 armhf 2.14-2 [124 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libopenjp2-7 armhf 2.5.0-2 [164 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libpython3.11 armhf 3.11.6-3 [1662 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
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Get:99 http://172.17.4.1/private trixie-staging/main armhf libraqm0 armhf 0.10.1-1 [11.7 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libwebpdemux2 armhf 1.3.2-0.3 [106 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libwebpmux3 armhf 1.3.2-0.3 [116 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf python3-appdirs all 1.4.4-4 [12.5 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf python3-attr all 23.1.0-2 [67.1 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf python3-brotli armhf 1.0.9-2+b3 [278 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf python3-numpy armhf 1:1.24.2-1 [3826 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf python3-contourpy armhf 1.0.7-1 [141 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:113 http://172.17.4.1/private trixie-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf python3-dateutil all 2.8.2-3 [78.4 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf python3-decorator all 5.1.1-5 [15.1 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf python3.11-dev armhf 3.11.6-3 [508 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf python3-dev armhf 3.11.4-5 [26.2 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf python3-scipy armhf 1.10.1-2+rpi1 [13.6 MB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf python3-ufolib2 all 0.16.0+dfsg1-1 [32.9 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf python3-sympy all 1.12-6 [3868 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf python3-tz all 2023.3.post1-1 [30.8 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf python3-lxml armhf 4.9.3-1 [1039 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b1 [23.9 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf python3-unicodedata2 armhf 15.1.0+ds-1 [296 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf unicode-data all 15.1.0-1 [8547 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf python3-fonttools armhf 4.38.0-1 [1047 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf python3-joblib all 1.2.0-4 [211 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf python3-kiwisolver armhf 1.4.4-1 [52.3 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf python3-pil armhf 10.0.0-1 [437 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf python3-tk armhf 3.11.5-1 [95.9 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf python3-pil.imagetk armhf 10.0.0-1 [75.2 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf python3-pyparsing all 3.1.1-1 [145 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf python3-packaging all 23.1-1 [37.4 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf python3-matplotlib armhf 3.6.3-1 [7453 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf python3-pandas-lib armhf 1.5.3+dfsg-6 [3000 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf python3-pandas all 1.5.3+dfsg-6 [2886 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf python3-patsy all 0.5.3-1 [173 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf python3-pubsub all 4.0.3-7 [46.7 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf python3-threadpoolctl all 3.1.0-1 [21.2 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf python3-sklearn-lib armhf 1.2.1+dfsg-1 [2061 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf python3-sklearn all 1.2.1+dfsg-1 [2103 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf python3-statsmodels-lib armhf 0.13.5+dfsg-7+rpi1 [1078 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf python3-statsmodels all 0.13.5+dfsg-7+rpi1 [4518 kB]
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Setting up media-types (10.1.0) ...
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No schema files found: doing nothing.
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Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libmagic1:armhf (1:5.45-2) ...
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Setting up gettext-base (0.21-13) ...
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Setting up file (1:5.45-2) ...
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Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.5.0-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
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Setting up mount (2.39.2-5) ...
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Setting up libsub-override-perl (0.09-4) ...
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Setting up libbsd0:armhf (0.11.7-4) ...
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Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up libpython3-stdlib:armhf (3.11.4-5) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up python3.11 (3.11.6-3) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-13) ...
Setting up mime-support (3.66) ...
Setting up libpython3.11:armhf (3.11.6-3) ...
Setting up libtool (2.4.7-7) ...
Setting up fontconfig-config (2.14.2-6) ...
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Setting up python3 (3.11.4-5) ...
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Setting up dpkg-dev (1.22.1+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up python3-six (1.16.0-4) ...
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Setting up libjs-jquery-ui (1.13.2+dfsg-1) ...
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Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up libpython3.11-dev:armhf (3.11.6-3) ...
Setting up python3-brotli (1.0.9-2+b3) ...
Setting up python3-cycler (0.11.0-1) ...
Setting up python3-kiwisolver (1.4.4-1) ...
Setting up libjs-sphinxdoc (5.3.0-7) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up python3-pubsub (4.0.3-7) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libxslt1.1:armhf (1.1.35-1) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up python3-dateutil (2.8.2-3) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up python3-mpmath (1.2.1-2) ...
Setting up python3-lib2to3 (3.11.5-1) ...
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Setting up liblbfgsb0:armhf (3.0+dfsg.4-1) ...
Setting up python3-pkg-resources (68.1.2-2) ...
Setting up python3-distutils (3.11.5-1) ...
Setting up python3-sympy (1.12-6) ...
Setting up python3-attr (23.1.0-2) ...
Setting up libpython3-dev:armhf (3.11.4-5) ...
Setting up python3-setuptools (68.1.2-2) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up python3-joblib (1.2.0-4) ...
Setting up python3-lz4 (4.0.2+dfsg-1+b1) ...
Setting up python3.11-dev (3.11.6-3) ...
Setting up python3-unicodedata2 (15.1.0+ds-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3-threadpoolctl (3.1.0-1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up man-db (2.11.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-fs (2.4.16-2) ...
Setting up libraqm0:armhf (0.10.1-1) ...
Setting up python3-dev (3.11.4-5) ...
Setting up python3-numpy (1:1.24.2-1) ...
Setting up python3-lxml:armhf (4.9.3-1) ...
Setting up python3-contourpy (1.0.7-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up python3-statsmodels-lib:armhf (0.13.5+dfsg-7+rpi1) ...
Setting up dh-python (6.20231025) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up python3-scipy (1.10.1-2+rpi1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up python3-pandas-lib:armhf (1.5.3+dfsg-6) ...
Setting up python3-sklearn-lib:armhf (1.2.1+dfsg-1) ...
Setting up debhelper (13.11.7) ...
Setting up python3-patsy (0.5.3-1) ...
Setting up python3-pil:armhf (10.0.0-1) ...
Setting up python3-pandas (1.5.3+dfsg-6) ...
Setting up python3-sklearn (1.2.1+dfsg-1) ...
Setting up python3-statsmodels (0.13.5+dfsg-7+rpi1) ...
Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up blt (2.5.3+dfsg-4.1) ...
Setting up python3-tk:armhf (3.11.5-1) ...
Setting up python3-pil.imagetk:armhf (10.0.0-1) ...
Setting up python3-fonttools (4.38.0-1) ...
Setting up python3-ufolib2 (0.16.0+dfsg1-1) ...
Setting up python3-matplotlib (3.6.3-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc-12_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.2 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.39.2-5 bsdutils_1:2.39.2-5 build-essential_12.9 bwa_0.7.17-7 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-10+rpi1 cpp-13_13.2.0-5+rpi1 dash_0.5.12-6 debconf_1.5.82 debhelper_13.11.7 debianutils_5.14 dh-autoreconf_20 dh-python_6.20231025 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lyx_2.3.7-1 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 gcc-13-base_13.2.0-5+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-13 gettext-base_0.21-13 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-5+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-5+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libbinutils_2.41-6+rpi1 libblas3_3.11.0-2 libblkid1_2.39.2-5 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcc1-0_13.2.0-5+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 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libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxrender1_1:0.9.10-1.1 libxslt1.1_1.1.35-1 libxss1_1:1.2.3-1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 mailcap_3.70+nmu1 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 media-types_10.1.0 mime-support_3.66 mount_2.39.2-5 ncurses-base_6.4+20231016-1 ncurses-bin_6.4+20231016-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 procps_2:4.0.4-2 python-matplotlib-data_3.6.3-1 python3_3.11.4-5 python3-appdirs_1.4.4-4 python3-attr_23.1.0-2 python3-brotli_1.0.9-2+b3 python3-contourpy_1.0.7-1 python3-cycler_0.11.0-1 python3-dateutil_2.8.2-3 python3-decorator_5.1.1-5 python3-dev_3.11.4-5 python3-distutils_3.11.5-1 python3-fonttools_4.38.0-1 python3-fs_2.4.16-2 python3-joblib_1.2.0-4 python3-kiwisolver_1.4.4-1 python3-lib2to3_3.11.5-1 python3-lxml_4.9.3-1 python3-lz4_4.0.2+dfsg-1+b1 python3-matplotlib_3.6.3-1 python3-minimal_3.11.4-5 python3-mpmath_1.2.1-2 python3-numpy_1:1.24.2-1 python3-packaging_23.1-1 python3-pandas_1.5.3+dfsg-6 python3-pandas-lib_1.5.3+dfsg-6 python3-patsy_0.5.3-1 python3-pil_10.0.0-1 python3-pil.imagetk_10.0.0-1 python3-pkg-resources_68.1.2-2 python3-pubsub_4.0.3-7 python3-pyparsing_3.1.1-1 python3-scipy_1.10.1-2+rpi1 python3-setuptools_68.1.2-2 python3-six_1.16.0-4 python3-sklearn_1.2.1+dfsg-1 python3-sklearn-lib_1.2.1+dfsg-1 python3-statsmodels_0.13.5+dfsg-7+rpi1 python3-statsmodels-lib_0.13.5+dfsg-7+rpi1 python3-sympy_1.12-6 python3-threadpoolctl_3.1.0-1 python3-tk_3.11.5-1 python3-tz_2023.3.post1-1 python3-ufolib2_0.16.0+dfsg1-1 python3-unicodedata2_15.1.0+ds-1 python3.11_3.11.6-3 python3.11-dev_3.11.6-3 python3.11-minimal_3.11.6-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2023c-10 unicode-data_15.1.0-1 usr-is-merged_37 util-linux_2.39.2-5 x11-common_1:7.7+23 xz-utils_5.4.4-0.1 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: tnseq-transit
Binary: tnseq-transit
Architecture: any
Version: 3.3.2-1
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Andreas Tille <tille@debian.org>, Étienne Mollier <emollier@debian.org>
Homepage: http://saclab.tamu.edu/essentiality/transit/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/med-team/tnseq-transit
Vcs-Git: https://salsa.debian.org/med-team/tnseq-transit.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-sklearn <!nocheck>, python3-statsmodels, python3-pubsub, bwa
Package-List:
tnseq-transit deb science optional arch=any
Checksums-Sha1:
5ec9c4691134b40759ecd39aef79fe6209dea199 40915072 tnseq-transit_3.3.2.orig.tar.gz
d0cbdcc014c43936e42c0a13e7055831f4200aa6 6852 tnseq-transit_3.3.2-1.debian.tar.xz
Checksums-Sha256:
9413a7753912b5a5968994c71e71e5d58065819d74e582bd3139ca57001cd98d 40915072 tnseq-transit_3.3.2.orig.tar.gz
bdf71ac130847a6a418e044e74a3fa72029d38083b10aea650aa789b952b1a99 6852 tnseq-transit_3.3.2-1.debian.tar.xz
Files:
037fdbb7d3dc9c0d5745a2ae300d5610 40915072 tnseq-transit_3.3.2.orig.tar.gz
79978954db06b108250738674d6cc9ab 6852 tnseq-transit_3.3.2-1.debian.tar.xz
Dgit: 23668c784ee0f7863e8170e84282d37141fe0873 debian archive/debian/3.3.2-1 https://git.dgit.debian.org/tnseq-transit
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gpgv: Signature made Sun Nov 5 13:25:46 2023 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./tnseq-transit_3.3.2-1.dsc: no acceptable signature found
dpkg-source: info: extracting tnseq-transit in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tnseq-transit_3.3.2.orig.tar.gz
dpkg-source: info: unpacking tnseq-transit_3.3.2-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip_test_requiring_non_existing_input_data.patch
dpkg-source: info: applying fix_problematic_comparison.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-1a0bdc6e-9d37-4d7a-80b1-071ec9c35da1
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package tnseq-transit
dpkg-buildpackage: info: source version 3.3.2-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:310: python3.11 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -rf tests_invalid_data
rm -rf tnseq_transit.egg-info
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p tests_invalid_data
if [ -L tests/H37Rv.fna ] && ! [ -e tests/H37Rv.fna ] \
; then mv tests/H37Rv.fna tests_invalid_data \
; fi
dh_auto_configure
I: pybuild base:310: python3.11 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running config
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:310: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
This deprecation is overdue, please update your project and remove deprecated
calls to avoid build errors in the future.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp
copying src/pytpp/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp
copying src/pytpp/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp
copying src/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp
copying src/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/images.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/CGI.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/anova.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/corrplot.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/gi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/heatmap.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/norm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/normalize.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/pathway_enrichment.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/tnseq_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/ttnfitness.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/utest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/zinb.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/convert
copying src/pytransit/convert/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/convert
copying src/pytransit/convert/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/convert
copying src/pytransit/convert/gff_to_prot_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/convert
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/combined_wig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/igv.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/mean_counts.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/prot_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
running egg_info
creating tnseq_transit.egg-info
writing tnseq_transit.egg-info/PKG-INFO
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing requirements to tnseq_transit.egg-info/requires.txt
writing top-level names to tnseq_transit.egg-info/top_level.txt
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'VERSION'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
adding license file 'LICENSE.md'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pytransit.data' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'pytransit.data' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'pytransit.data' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'pytransit.data' to be distributed and are
already explicitly excluding 'pytransit.data' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pytransit.data.CGI' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'pytransit.data.CGI' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'pytransit.data.CGI' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'pytransit.data.CGI' to be distributed and are
already explicitly excluding 'pytransit.data.CGI' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pytransit.genomes' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'pytransit.genomes' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'pytransit.genomes' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'pytransit.genomes' to be distributed and are
already explicitly excluding 'pytransit.genomes' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/COG_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/GO_associated_Rvs.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/GO_term_names.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/H37Rv_COG_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/H37Rv_GO_terms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/H37Rv_sanger_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/README.md -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/cholesterol_glycerol_combined.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/gene_ontology.1_2.3-11-18.obo -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/iron_combined_wig4.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/iron_samples_metadata.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg_covar.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg_interactions.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/sanger_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/smeg_COG_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/smeg_GO_terms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI
copying src/pytransit/data/CGI/IDs.H37Rv.CRISPRi.lib.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI
copying src/pytransit/data/CGI/counts_metadata.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI
copying src/pytransit/data/CGI/sgRNA_metadata.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI
copying src/pytransit/data/CGI/uninduced_ATC_counts.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test -- --system=custom --test-args="PYTHONPATH=tests {interpreter} -m unittest -v tests/*.py"
I: pybuild base:310: PYTHONPATH=tests python3.11 -m unittest -v tests/*.py
test_Binomial (tests.test_analysis_methods.TestMethods.test_Binomial) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1290: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1217: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:521: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
####################
tests.test_analysis_methods.TestMethods.test_Binomial
####################
[binomial] Starting Binomial Method
[binomial] Getting Data
[binomial] Setting Parameters
[binomial] Setting Initial Values
[binomial] Running Binomial Method... 0.2%
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[binomial] Running Binomial Method... 7.7%
[binomial] Running Binomial Method... 7.8%
[binomial] Running Binomial Method... 7.9%
[binomial] Running Binomial Method... 8.0%
[binomial] Running Binomial Method... 8.1%
[binomial] Running Binomial Method... 8.2%
[binomial] Running Binomial Method... 8.3%
[binomial] Running Binomial Method... 8.4%
[binomial] Running Binomial Method... 8.5%
[binomial] Running Binomial Method... 8.5%
[binomial] Running Binomial Method... 8.6%
[binomial] Running Binomial Method... 8.7%
[binomial] Running Binomial Method... 8.8%
[binomial] Running Binomial Method... 8.9%
[binomial] Running Binomial Method... 9.0%
[binomial] Running Binomial Method... 9.1%
[binomial] Running Binomial Method... 9.2%
[binomial] Running Binomial Method... 9.3%
[binomial] Running Binomial Method... 9.4%
[binomial] Running Binomial Method... 9.5%
[binomial] Running Binomial Method... 9.5%
[binomial] Running Binomial Method... 9.6%
[binomial] Running Binomial Method... 9.7%
[binomial] Running Binomial Method... 9.8%
[binomial] Running Binomial Method... 9.9%
[binomial] Running Binomial Method... 10.0%
[binomial] Running Binomial Method... 10.1%
[binomial] Running Binomial Method... 10.2%
[binomial] Running Binomial Method... 10.3%
[binomial] Running Binomial Method... 10.4%
[binomial] Running Binomial Method... 10.5%
[binomial] Running Binomial Method... 10.5%
[binomial] Running Binomial Method... 10.6%
[binomial] Running Binomial Method... 10.7%
[binomial] Running Binomial Method... 10.8%
[binomial] Running Binomial Method... 10.9%
[binomial] Running Binomial Method... 11.0%
[binomial] Running Binomial Method... 11.1%
[binomial] Running Binomial Method... 11.2%
[binomial] Running Binomial Method... 11.3%
[binomial] Running Binomial Method... 11.4%
[binomial] Running Binomial Method... 11.5%
[binomial] Running Binomial Method... 11.5%
[binomial] Running Binomial Method... 11.6%
[binomial] Running Binomial Method... 11.7%
[binomial] Running Binomial Method... 11.8%
[binomial] Running Binomial Method... 11.9%
[binomial] Running Binomial Method... 12.0%
[binomial] Running Binomial Method... 12.1%
[binomial] Running Binomial Method... 12.2%
[binomial] Running Binomial Method... 12.3%
[binomial] Running Binomial Method... 12.4%
[binomial] Running Binomial Method... 12.5%
[binomial] Running Binomial Method... 12.5%
[binomial] Running Binomial Method... 12.6%
[binomial] Running Binomial Method... 12.7%
[binomial] Running Binomial Method... 12.8%
[binomial] Running Binomial Method... 12.9%
[binomial] Running Binomial Method... 13.0%
[binomial] Running Binomial Method... 13.1%
[binomial] Running Binomial Method... 13.2%
[binomial] Running Binomial Method... 13.3%
[binomial] Running Binomial Method... 13.4%
[binomial] Running Binomial Method... 13.5%
[binomial] Running Binomial Method... 13.5%
[binomial] Running Binomial Method... 13.6%
[binomial] Running Binomial Method... 13.7%
[binomial] Running Binomial Method... 13.8%
[binomial] Running Binomial Method... 13.9%
[binomial] Running Binomial Method... 14.0%
[binomial] Running Binomial Method... 14.1%
[binomial] Running Binomial Method... 14.2%
[binomial] Running Binomial Method... 14.3%
[binomial] Running Binomial Method... 14.4%
[binomial] Running Binomial Method... 14.5%
[binomial] Running Binomial Method... 14.5%
[binomial] Running Binomial Method... 14.6%
[binomial] Running Binomial Method... 14.7%
[binomial] Running Binomial Method... 14.8%
[binomial] Running Binomial Method... 14.9%
[binomial] Running Binomial Method... 15.0%
[binomial] Running Binomial Method... 15.1%
[binomial] Running Binomial Method... 15.2%
[binomial] Running Binomial Method... 15.3%
[binomial] Running Binomial Method... 15.4%
[binomial] Running Binomial Method... 15.5%
[binomial] Running Binomial Method... 15.5%
[binomial] Running Binomial Method... 15.6%
[binomial] Running Binomial Method... 15.7%
[binomial] Running Binomial Method... 15.8%
[binomial] Running Binomial Method... 15.9%
[binomial] Running Binomial Method... 16.0%
[binomial] Running Binomial Method... 16.1%
[binomial] Running Binomial Method... 16.2%
[binomial] Running Binomial Method... 16.3%
[binomial] Running Binomial Method... 16.4%
[binomial] Running Binomial Method... 16.5%
[binomial] Running Binomial Method... 16.5%
[binomial] Running Binomial Method... 16.6%
[binomial] Running Binomial Method... 16.7%
[binomial] Running Binomial Method... 16.8%
[binomial] Running Binomial Method... 16.9%
[binomial] Running Binomial Method... 17.0%
[binomial] Running Binomial Method... 17.1%
[binomial] Running Binomial Method... 17.2%
[binomial] Running Binomial Method... 17.3%
[binomial] Running Binomial Method... 17.4%
[binomial] Running Binomial Method... 17.5%
[binomial] Running Binomial Method... 17.5%
[binomial] Running Binomial Method... 17.6%
[binomial] Running Binomial Method... 17.7%
[binomial] Running Binomial Method... 17.8%
[binomial] Running Binomial Method... 17.9%
[binomial] Running Binomial Method... 18.0%
[binomial] Running Binomial Method... 18.1%
[binomial] Running Binomial Method... 18.2%
[binomial] Running Binomial Method... 18.3%
[binomial] Running Binomial Method... 18.4%
[binomial] Running Binomial Method... 18.5%
[binomial] Running Binomial Method... 18.5%
[binomial] Running Binomial Method... 18.6%
[binomial] Running Binomial Method... 18.7%
[binomial] Running Binomial Method... 18.8%
[binomial] Running Binomial Method... 18.9%
[binomial] Running Binomial Method... 19.0%
[binomial] Running Binomial Method... 19.1%
[binomial] Running Binomial Method... 19.2%
[binomial] Running Binomial Method... 19.3%
[binomial] Running Binomial Method... 19.4%
[binomial] Running Binomial Method... 19.5%
[binomial] Running Binomial Method... 19.5%
[binomial] Running Binomial Method... 19.6%
[binomial] Running Binomial Method... 19.7%
[binomial] Running Binomial Method... 19.8%
[binomial] Running Binomial Method... 19.9%
[binomial] Running Binomial Method... 20.0%
[binomial] Running Binomial Method... 20.1%
[binomial] Running Binomial Method... 20.2%
[binomial] Running Binomial Method... 20.3%
[binomial] Running Binomial Method... 20.4%
[binomial] Running Binomial Method... 20.5%
[binomial] Running Binomial Method... 20.5%
[binomial] Running Binomial Method... 20.6%
[binomial] Running Binomial Method... 20.7%
[binomial] Running Binomial Method... 20.8%
[binomial] Running Binomial Method... 20.9%
[binomial] Running Binomial Method... 21.0%
[binomial] Running Binomial Method... 21.1%
[binomial] Running Binomial Method... 21.2%
[binomial] Running Binomial Method... 21.3%
[binomial] Running Binomial Method... 21.4%
[binomial] Running Binomial Method... 21.5%
[binomial] Running Binomial Method... 21.5%
[binomial] Running Binomial Method... 21.6%
[binomial] Running Binomial Method... 21.7%
[binomial] Running Binomial Method... 21.8%
[binomial] Running Binomial Method... 21.9%
[binomial] Running Binomial Method... 22.0%
[binomial] Running Binomial Method... 22.1%
[binomial] Running Binomial Method... 22.2%
[binomial] Running Binomial Method... 22.3%
[binomial] Running Binomial Method... 22.4%
[binomial] Running Binomial Method... 22.5%
[binomial] Running Binomial Method... 22.5%
[binomial] Running Binomial Method... 22.6%
[binomial] Running Binomial Method... 22.7%
[binomial] Running Binomial Method... 22.8%
[binomial] Running Binomial Method... 22.9%
[binomial] Running Binomial Method... 23.0%
[binomial] Running Binomial Method... 23.1%
[binomial] Running Binomial Method... 23.2%
[binomial] Running Binomial Method... 23.3%
[binomial] Running Binomial Method... 23.4%
[binomial] Running Binomial Method... 23.5%
[binomial] Running Binomial Method... 23.5%
[binomial] Running Binomial Method... 23.6%
[binomial] Running Binomial Method... 23.7%
[binomial] Running Binomial Method... 23.8%
[binomial] Running Binomial Method... 23.9%
[binomial] Running Binomial Method... 24.0%
[binomial] Running Binomial Method... 24.1%
[binomial] Running Binomial Method... 24.2%
[binomial] Running Binomial Method... 24.3%
[binomial] Running Binomial Method... 24.4%
[binomial] Running Binomial Method... 24.5%
[binomial] Running Binomial Method... 24.5%
[binomial] Running Binomial Method... 24.6%
[binomial] Running Binomial Method... 24.7%
[binomial] Running Binomial Method... 24.8%
[binomial] Running Binomial Method... 24.9%
[binomial] Running Binomial Method... 25.0%
[binomial] Running Binomial Method... 25.1%
[binomial] Running Binomial Method... 25.2%
[binomial] Running Binomial Method... 25.3%
[binomial] Running Binomial Method... 25.4%
[binomial] Running Binomial Method... 25.5%
[binomial] Running Binomial Method... 25.5%
[binomial] Running Binomial Method... 25.6%
[binomial] Running Binomial Method... 25.7%
[binomial] Running Binomial Method... 25.8%
[binomial] Running Binomial Method... 25.9%
[binomial] Running Binomial Method... 26.0%
[binomial] Running Binomial Method... 26.1%
[binomial] Running Binomial Method... 26.2%
[binomial] Running Binomial Method... 26.3%
[binomial] Running Binomial Method... 26.4%
[binomial] Running Binomial Method... 26.5%
[binomial] Running Binomial Method... 26.5%
[binomial] Running Binomial Method... 26.6%
[binomial] Running Binomial Method... 26.7%
[binomial] Running Binomial Method... 26.8%
[binomial] Running Binomial Method... 26.9%
[binomial] Running Binomial Method... 27.0%
[binomial] Running Binomial Method... 27.1%
[binomial] Running Binomial Method... 27.2%
[binomial] Running Binomial Method... 27.3%
[binomial] Running Binomial Method... 27.4%
[binomial] Running Binomial Method... 27.5%
[binomial] Running Binomial Method... 27.5%
[binomial] Running Binomial Method... 27.6%
[binomial] Running Binomial Method... 27.7%
[binomial] Running Binomial Method... 27.8%
[binomial] Running Binomial Method... 27.9%
[binomial] Running Binomial Method... 28.0%
[binomial] Running Binomial Method... 28.1%
[binomial] Running Binomial Method... 28.2%
[binomial] Running Binomial Method... 28.3%
[binomial] Running Binomial Method... 28.4%
[binomial] Running Binomial Method... 28.5%
[binomial] Running Binomial Method... 28.5%
[binomial] Running Binomial Method... 28.6%
[binomial] Running Binomial Method... 28.7%
[binomial] Running Binomial Method... 28.8%
[binomial] Running Binomial Method... 28.9%
[binomial] Running Binomial Method... 29.0%
[binomial] Running Binomial Method... 29.1%
[binomial] Running Binomial Method... 29.2%
[binomial] Running Binomial Method... 29.3%
[binomial] Running Binomial Method... 29.4%
[binomial] Running Binomial Method... 29.5%
[binomial] Running Binomial Method... 29.5%
[binomial] Running Binomial Method... 29.6%
[binomial] Running Binomial Method... 29.7%
[binomial] Running Binomial Method... 29.8%
[binomial] Running Binomial Method... 29.9%
[binomial] Running Binomial Method... 30.0%
[binomial] Running Binomial Method... 30.1%
[binomial] Running Binomial Method... 30.2%
[binomial] Running Binomial Method... 30.3%
[binomial] Running Binomial Method... 30.4%
[binomial] Running Binomial Method... 30.5%
[binomial] Running Binomial Method... 30.5%
[binomial] Running Binomial Method... 30.6%
[binomial] Running Binomial Method... 30.7%
[binomial] Running Binomial Method... 30.8%
[binomial] Running Binomial Method... 30.9%
[binomial] Running Binomial Method... 31.0%
[binomial] Running Binomial Method... 31.1%
[binomial] Running Binomial Method... 31.2%
[binomial] Running Binomial Method... 31.3%
[binomial] Running Binomial Method... 31.4%
[binomial] Running Binomial Method... 31.5%
[binomial] Running Binomial Method... 31.5%
[binomial] Running Binomial Method... 31.6%
[binomial] Running Binomial Method... 31.7%
[binomial] Running Binomial Method... 31.8%
[binomial] Running Binomial Method... 31.9%
[binomial] Running Binomial Method... 32.0%
[binomial] Running Binomial Method... 32.1%
[binomial] Running Binomial Method... 32.2%
[binomial] Running Binomial Method... 32.3%
[binomial] Running Binomial Method... 32.4%
[binomial] Running Binomial Method... 32.5%
[binomial] Running Binomial Method... 32.5%
[binomial] Running Binomial Method... 32.6%
[binomial] Running Binomial Method... 32.7%
[binomial] Running Binomial Method... 32.8%
[binomial] Running Binomial Method... 32.9%
[binomial] Running Binomial Method... 33.0%
[binomial] Running Binomial Method... 33.1%
[binomial] Running Binomial Method... 33.2%
[binomial] Running Binomial Method... 33.3%
[binomial] Running Binomial Method... 33.4%
[binomial] Running Binomial Method... 33.5%
[binomial] Running Binomial Method... 33.5%
[binomial] Running Binomial Method... 33.6%
[binomial] Running Binomial Method... 33.7%
[binomial] Running Binomial Method... 33.8%
[binomial] Running Binomial Method... 33.9%
[binomial] Running Binomial Method... 34.0%
[binomial] Running Binomial Method... 34.1%
[binomial] Running Binomial Method... 34.2%
[binomial] Running Binomial Method... 34.3%
[binomial] Running Binomial Method... 34.4%
[binomial] Running Binomial Method... 34.5%
[binomial] Running Binomial Method... 34.5%
[binomial] Running Binomial Method... 34.6%
[binomial] Running Binomial Method... 34.7%
[binomial] Running Binomial Method... 34.8%
[binomial] Running Binomial Method... 34.9%
[binomial] Running Binomial Method... 35.0%
[binomial] Running Binomial Method... 35.1%
[binomial] Running Binomial Method... 35.2%
[binomial] Running Binomial Method... 35.3%
[binomial] Running Binomial Method... 35.4%
[binomial] Running Binomial Method... 35.5%
[binomial] Running Binomial Method... 35.5%
[binomial] Running Binomial Method... 35.6%
[binomial] Running Binomial Method... 35.7%
[binomial] Running Binomial Method... 35.8%
[binomial] Running Binomial Method... 35.9%
[binomial] Running Binomial Method... 36.0%
[binomial] Running Binomial Method... 36.1%
[binomial] Running Binomial Method... 36.2%
[binomial] Running Binomial Method... 36.3%
[binomial] Running Binomial Method... 36.4%
[binomial] Running Binomial Method... 36.5%
[binomial] Running Binomial Method... 36.5%
[binomial] Running Binomial Method... 36.6%
[binomial] Running Binomial Method... 36.7%
[binomial] Running Binomial Method... 36.8%
[binomial] Running Binomial Method... 36.9%
[binomial] Running Binomial Method... 37.0%
[binomial] Running Binomial Method... 37.1%
[binomial] Running Binomial Method... 37.2%
[binomial] Running Binomial Method... 37.3%
[binomial] Running Binomial Method... 37.4%
[binomial] Running Binomial Method... 37.5%
[binomial] Running Binomial Method... 37.5%
[binomial] Running Binomial Method... 37.6%
[binomial] Running Binomial Method... 37.7%
[binomial] Running Binomial Method... 37.8%
[binomial] Running Binomial Method... 37.9%
[binomial] Running Binomial Method... 38.0%
[binomial] Running Binomial Method... 38.1%
[binomial] Running Binomial Method... 38.2%
[binomial] Running Binomial Method... 38.3%
[binomial] Running Binomial Method... 38.4%
[binomial] Running Binomial Method... 38.5%
[binomial] Running Binomial Method... 38.5%
[binomial] Running Binomial Method... 38.6%
[binomial] Running Binomial Method... 38.7%
[binomial] Running Binomial Method... 38.8%
[binomial] Running Binomial Method... 38.9%
[binomial] Running Binomial Method... 39.0%
[binomial] Running Binomial Method... 39.1%
[binomial] Running Binomial Method... 39.2%
[binomial] Running Binomial Method... 39.3%
[binomial] Running Binomial Method... 39.4%
[binomial] Running Binomial Method... 39.5%
[binomial] Running Binomial Method... 39.5%
[binomial] Running Binomial Method... 39.6%
[binomial] Running Binomial Method... 39.7%
[binomial] Running Binomial Method... 39.8%
[binomial] Running Binomial Method... 39.9%
[binomial] Running Binomial Method... 40.0%
[binomial] Running Binomial Method... 40.1%
[binomial] Running Binomial Method... 40.2%
[binomial] Running Binomial Method... 40.3%
[binomial] Running Binomial Method... 40.4%
[binomial] Running Binomial Method... 40.5%
[binomial] Running Binomial Method... 40.5%
[binomial] Running Binomial Method... 40.6%
[binomial] Running Binomial Method... 40.7%
[binomial] Running Binomial Method... 40.8%
[binomial] Running Binomial Method... 40.9%
[binomial] Running Binomial Method... 41.0%
[binomial] Running Binomial Method... 41.1%
[binomial] Running Binomial Method... 41.2%
[binomial] Running Binomial Method... 41.3%
[binomial] Running Binomial Method... 41.4%
[binomial] Running Binomial Method... 41.5%
[binomial] Running Binomial Method... 41.5%
[binomial] Running Binomial Method... 41.6%
[binomial] Running Binomial Method... 41.7%
[binomial] Running Binomial Method... 41.8%
[binomial] Running Binomial Method... 41.9%
[binomial] Running Binomial Method... 42.0%
[binomial] Running Binomial Method... 42.1%
[binomial] Running Binomial Method... 42.2%
[binomial] Running Binomial Method... 42.3%
[binomial] Running Binomial Method... 42.4%
[binomial] Running Binomial Method... 42.5%
[binomial] Running Binomial Method... 42.5%
[binomial] Running Binomial Method... 42.6%
[binomial] Running Binomial Method... 42.7%
[binomial] Running Binomial Method... 42.8%
[binomial] Running Binomial Method... 42.9%
[binomial] Running Binomial Method... 43.0%
[binomial] Running Binomial Method... 43.1%
[binomial] Running Binomial Method... 43.2%
[binomial] Running Binomial Method... 43.3%
[binomial] Running Binomial Method... 43.4%
[binomial] Running Binomial Method... 43.5%
[binomial] Running Binomial Method... 43.5%
[binomial] Running Binomial Method... 43.6%
[binomial] Running Binomial Method... 43.7%
[binomial] Running Binomial Method... 43.8%
[binomial] Running Binomial Method... 43.9%
[binomial] Running Binomial Method... 44.0%
[binomial] Running Binomial Method... 44.1%
[binomial] Running Binomial Method... 44.2%
[binomial] Running Binomial Method... 44.3%
[binomial] Running Binomial Method... 44.4%
[binomial] Running Binomial Method... 44.5%
[binomial] Running Binomial Method... 44.5%
[binomial] Running Binomial Method... 44.6%
[binomial] Running Binomial Method... 44.7%
[binomial] Running Binomial Method... 44.8%
[binomial] Running Binomial Method... 44.9%
[binomial] Running Binomial Method... 45.0%
[binomial] Running Binomial Method... 45.1%
[binomial] Running Binomial Method... 45.2%
[binomial] Running Binomial Method... 45.3%
[binomial] Running Binomial Method... 45.4%
[binomial] Running Binomial Method... 45.5%
[binomial] Running Binomial Method... 45.5%
[binomial] Running Binomial Method... 45.6%
[binomial] Running Binomial Method... 45.7%
[binomial] Running Binomial Method... 45.8%
[binomial] Running Binomial Method... 45.9%
[binomial] Running Binomial Method... 46.0%
[binomial] Running Binomial Method... 46.1%
[binomial] Running Binomial Method... 46.2%
[binomial] Running Binomial Method... 46.3%
[binomial] Running Binomial Method... 46.4%
[binomial] Running Binomial Method... 46.5%
[binomial] Running Binomial Method... 46.5%
[binomial] Running Binomial Method... 46.6%
[binomial] Running Binomial Method... 46.7%
[binomial] Running Binomial Method... 46.8%
[binomial] Running Binomial Method... 46.9%
[binomial] Running Binomial Method... 47.0%
[binomial] Running Binomial Method... 47.1%
[binomial] Running Binomial Method... 47.2%
[binomial] Running Binomial Method... 47.3%
[binomial] Running Binomial Method... 47.4%
[binomial] Running Binomial Method... 47.5%
[binomial] Running Binomial Method... 47.5%
[binomial] Running Binomial Method... 47.6%
[binomial] Running Binomial Method... 47.7%
[binomial] Running Binomial Method... 47.8%
[binomial] Running Binomial Method... 47.9%
[binomial] Running Binomial Method... 48.0%
[binomial] Running Binomial Method... 48.1%
[binomial] Running Binomial Method... 48.2%
[binomial] Running Binomial Method... 48.3%
[binomial] Running Binomial Method... 48.4%
[binomial] Running Binomial Method... 48.5%
[binomial] Running Binomial Method... 48.5%
[binomial] Running Binomial Method... 48.6%
[binomial] Running Binomial Method... 48.7%
[binomial] Running Binomial Method... 48.8%
[binomial] Running Binomial Method... 48.9%
[binomial] Running Binomial Method... 49.0%
[binomial] Running Binomial Method... 49.1%
[binomial] Running Binomial Method... 49.2%
[binomial] Running Binomial Method... 49.3%
[binomial] Running Binomial Method... 49.4%
[binomial] Running Binomial Method... 49.5%
[binomial] Running Binomial Method... 49.5%
[binomial] Running Binomial Method... 49.6%
[binomial] Running Binomial Method... 49.7%
[binomial] Running Binomial Method... 49.8%
[binomial] Running Binomial Method... 49.9%
[binomial] Running Binomial Method... 50.0%
[binomial] Running Binomial Method... 50.1%
[binomial] Running Binomial Method... 50.2%
[binomial] Running Binomial Method... 50.3%
[binomial] Running Binomial Method... 50.4%
[binomial] Running Binomial Method... 50.5%
[binomial] Running Binomial Method... 50.5%
[binomial] Running Binomial Method... 50.6%
[binomial] Running Binomial Method... 50.7%
[binomial] Running Binomial Method... 50.8%
[binomial] Running Binomial Method... 50.9%
[binomial] Running Binomial Method... 51.0%
[binomial] Running Binomial Method... 51.1%
[binomial] Running Binomial Method... 51.2%
[binomial] Running Binomial Method... 51.3%
[binomial] Running Binomial Method... 51.4%
[binomial] Running Binomial Method... 51.5%
[binomial] Running Binomial Method... 51.5%
[binomial] Running Binomial Method... 51.6%
[binomial] Running Binomial Method... 51.7%
[binomial] Running Binomial Method... 51.8%
[binomial] Running Binomial Method... 51.9%
[binomial] Running Binomial Method... 52.0%
[binomial] Running Binomial Method... 52.1%
[binomial] Running Binomial Method... 52.2%
[binomial] Running Binomial Method... 52.3%
[binomial] Running Binomial Method... 52.4%
[binomial] Running Binomial Method... 52.5%
[binomial] Running Binomial Method... 52.5%
[binomial] Running Binomial Method... 52.6%
[binomial] Running Binomial Method... 52.7%
[binomial] Running Binomial Method... 52.8%
[binomial] Running Binomial Method... 52.9%
[binomial] Running Binomial Method... 53.0%
[binomial] Running Binomial Method... 53.1%
[binomial] Running Binomial Method... 53.2%
[binomial] Running Binomial Method... 53.3%
[binomial] Running Binomial Method... 53.4%
[binomial] Running Binomial Method... 53.5%
[binomial] Running Binomial Method... 53.5%
[binomial] Running Binomial Method... 53.6%
[binomial] Running Binomial Method... 53.7%
[binomial] Running Binomial Method... 53.8%
[binomial] Running Binomial Method... 53.9%
[binomial] Running Binomial Method... 54.0%
[binomial] Running Binomial Method... 54.1%
[binomial] Running Binomial Method... 54.2%
[binomial] Running Binomial Method... 54.3%
[binomial] Running Binomial Method... 54.4%
[binomial] Running Binomial Method... 54.5%
[binomial] Running Binomial Method... 54.5%
[binomial] Running Binomial Method... 54.6%
[binomial] Running Binomial Method... 54.7%
[binomial] Running Binomial Method... 54.8%
[binomial] Running Binomial Method... 54.9%
[binomial] Running Binomial Method... 55.0%
[binomial] Running Binomial Method... 55.1%
[binomial] Running Binomial Method... 55.2%
[binomial] Running Binomial Method... 55.3%
[binomial] Running Binomial Method... 55.4%
[binomial] Running Binomial Method... 55.5%
[binomial] Running Binomial Method... 55.5%
[binomial] Running Binomial Method... 55.6%
[binomial] Running Binomial Method... 55.7%
[binomial] Running Binomial Method... 55.8%
[binomial] Running Binomial Method... 55.9%
[binomial] Running Binomial Method... 56.0%
[binomial] Running Binomial Method... 56.1%
[binomial] Running Binomial Method... 56.2%
[binomial] Running Binomial Method... 56.3%
[binomial] Running Binomial Method... 56.4%
[binomial] Running Binomial Method... 56.5%
[binomial] Running Binomial Method... 56.5%
[binomial] Running Binomial Method... 56.6%
[binomial] Running Binomial Method... 56.7%
[binomial] Running Binomial Method... 56.8%
[binomial] Running Binomial Method... 56.9%
[binomial] Running Binomial Method... 57.0%
[binomial] Running Binomial Method... 57.1%
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ok
test_GI (tests.test_analysis_methods.TestMethods.test_GI) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[binomial]
[binomial] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[binomial] Finished Binomial Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_GI
####################
[gi] Starting Genetic Interactions Method
[gi] Getting Data
[gi] Normalizing using: TTR
[gi] Running GI Method... 2%
[gi] analyzing Rv0244c (0.0% done)
[gi] Running GI Method... 4%
[gi] analyzing Rv0362 (2.0% done)
[gi] Running GI Method... 6%
[gi] analyzing Rv0450c (4.0% done)
[gi] Running GI Method... 8%
[gi] analyzing Rv0485 (6.0% done)
[gi] Running GI Method... 10%
[gi] analyzing Rv0694 (8.0% done)
[gi] Running GI Method... 12%
[gi] analyzing Rv0761c (10.0% done)
[gi] Running GI Method... 14%
[gi] analyzing Rv1129c (12.0% done)
[gi] Running GI Method... 16%
[gi] analyzing Rv1130 (14.0% done)
[gi] Running GI Method... 18%
[gi] analyzing Rv1183 (16.0% done)
[gi] Running GI Method... 20%
[gi] analyzing Rv1428c (18.0% done)
[gi] Running GI Method... 22%
[gi] analyzing Rv3200c (20.0% done)
[gi] Running GI Method... 24%
[gi] analyzing Rv3559c (22.0% done)
[gi] Running GI Method... 25%
[gi] analyzing Rv3564 (24.0% done)
[gi] Running GI Method... 27%
[gi] analyzing Rv3575c (26.0% done)
[gi] Running GI Method... 29%
[gi] analyzing Rv0381c (28.0% done)
[gi] Running GI Method... 31%
[gi] analyzing Rv1432 (30.0% done)
[gi] Running GI Method... 33%
[gi] analyzing Rv3543c (32.0% done)
[gi] Running GI Method... 35%
[gi] analyzing Rv3570c (34.0% done)
[gi] Running GI Method... 37%
[gi] analyzing Rv0495c (36.0% done)
[gi] Running GI Method... 39%
[gi] analyzing Rv0805 (38.0% done)
[gi] Running GI Method... 41%
[gi] analyzing Rvnr01 (40.0% done)
[gi] Running GI Method... 43%
[gi] analyzing Rv3924c (42.0% done)
[gi] Running GI Method... 45%
[gi] analyzing Rv3923c (44.0% done)
[gi] Running GI Method... 47%
[gi] analyzing Rv3922c (46.0% done)
[gi] Running GI Method... 49%
[gi] analyzing Rv3921c (48.0% done)
[gi] Running GI Method... 51%
[gi] analyzing Rv3920c (50.0% done)
[gi] Running GI Method... 53%
[gi] analyzing Rv3918c (52.0% done)
[gi] Running GI Method... 55%
[gi] analyzing Rv3917c (54.0% done)
[gi] Running GI Method... 57%
[gi] analyzing Rv3916c (56.0% done)
[gi] Running GI Method... 59%
[gi] analyzing Rv3915 (58.0% done)
[gi] Running GI Method... 61%
[gi] analyzing Rv1132 (60.0% done)
[gi] Running GI Method... 63%
[gi] analyzing Rv0499 (62.0% done)
[gi] Running GI Method... 65%
[gi] analyzing Rv2190c (64.0% done)
[gi] Running GI Method... 67%
[gi] analyzing Rv2207 (66.0% done)
[gi] Running GI Method... 69%
[gi] analyzing Rv2347c (68.0% done)
[gi] Running GI Method... 71%
[gi] analyzing Rv2567 (70.0% done)
[gi] Running GI Method... 73%
[gi] analyzing Rv2887 (72.0% done)
[gi] Running GI Method... 75%
[gi] analyzing Rv3005c (74.0% done)
[gi] Running GI Method... 76%
[gi] analyzing Rv1111c (76.0% done)
[gi] Running GI Method... 78%
[gi] analyzing Rv1072 (78.0% done)
[gi] Running GI Method... 80%
[gi] analyzing Rv2958c (80.0% done)
[gi] Running GI Method... 82%
[gi] analyzing Rv3552 (82.0% done)
[gi] Running GI Method... 84%
[gi] analyzing Rv0129c (84.0% done)
[gi] Running GI Method... 86%
[gi] analyzing Rv1821 (86.0% done)
[gi] Running GI Method... 88%
[gi] analyzing Rv2224c (88.0% done)
[gi] Running GI Method... 90%
[gi] analyzing Rv3567c (90.0% done)
[gi] Running GI Method... 92%
[gi] analyzing Rv0924c (92.0% done)
[gi] Running GI Method... 94%
[gi] analyzing Rv0249c (94.0% done)
[gi] Running GI Method... 96%
[gi] analyzing Rv2021c (96.0% done)
[gi] Running GI Method... 98%
[gi] analyzing Rv2694c (98.0% done)
[gi] Running GI Method... 100%
/usr/lib/python3.11/unittest/case.py:579: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='w' encoding='UTF-8'>
if method() is not None:
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_Griffin (tests.test_analysis_methods.TestMethods.test_Griffin) ... [gi] analyzing Rv3586 (100.0% done)
[gi] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[gi] Finished Genetic Interactions Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_Griffin
####################
[griffin] Starting Griffin Method
[griffin] Getting Data
[griffin] Running Griffin Method... 2.0%
[griffin] Running Griffin Method... 3.9%
[griffin] Running Griffin Method... 5.9%
[griffin] Running Griffin Method... 7.8%
[griffin] Running Griffin Method... 9.8%
[griffin] Running Griffin Method... 11.8%
[griffin] Running Griffin Method... 13.7%
[griffin] Running Griffin Method... 15.7%
[griffin] Running Griffin Method... 17.6%
[griffin] Running Griffin Method... 19.6%
[griffin] Running Griffin Method... 21.6%
[griffin] Running Griffin Method... 23.5%
[griffin] Running Griffin Method... 25.5%
[griffin] Running Griffin Method... 27.5%
[griffin] Running Griffin Method... 29.4%
[griffin] Running Griffin Method... 31.4%
[griffin] Running Griffin Method... 33.3%
[griffin] Running Griffin Method... 35.3%
[griffin] Running Griffin Method... 37.3%
[griffin] Running Griffin Method... 39.2%
[griffin] Running Griffin Method... 41.2%
[griffin] Running Griffin Method... 43.1%
[griffin] Running Griffin Method... 45.1%
[griffin] Running Griffin Method... 47.1%
[griffin] Running Griffin Method... 49.0%
[griffin] Running Griffin Method... 51.0%
[griffin] Running Griffin Method... 52.9%
[griffin] Running Griffin Method... 54.9%
[griffin] Running Griffin Method... 56.9%
[griffin] Running Griffin Method... 58.8%
[griffin] Running Griffin Method... 60.8%
[griffin] Running Griffin Method... 62.7%
[griffin] Running Griffin Method... 64.7%
[griffin] Running Griffin Method... 66.7%
[griffin] Running Griffin Method... 68.6%
[griffin] Running Griffin Method... 70.6%
[griffin] Running Griffin Method... 72.5%
[griffin] Running Griffin Method... 74.5%
[griffin] Running Griffin Method... 76.5%
[griffin] Running Griffin Method... 78.4%
[griffin] Running Griffin Method... 80.4%
[griffin] Running Griffin Method... 82.4%
[griffin] Running Griffin Method... 84.3%
[griffin] Running Griffin Method... 86.3%
[griffin] Running Griffin Method... 88.2%
[griffin] Running Griffin Method... 90.2%
[griffin] Running Griffin Method... 92.2%
[griffin] Running Griffin Method... 94.1%
[griffin] Running Griffin Method... 96.1%
[griffin] Running Griffin Method... 98.0%
[griffin] Running Griffin Method... 100.0%
ok
test_Gumbel (tests.test_analysis_methods.TestMethods.test_Gumbel) ... [griffin]
[griffin] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[griffin] Finished Griffin Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_Gumbel
####################
[gumbel] Reading Annotation
[gumbel] Getting Data
[gumbel] Doing Regression
[gumbel] Setting Initial Class
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 100.0%
ok
test_HMM (tests.test_analysis_methods.TestMethods.test_HMM) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/analysis/hmm.py:194: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
T = len([1 for line in open(ctrldata[0]).readlines() if not line.startswith("#")])
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[gumbel]
[gumbel] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[gumbel] Finished Gumbel Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_HMM
####################
[hmm] Starting HMM Method
[hmm] Getting Data
[hmm] Normalizing using: TTR
[hmm] Running HMM Method... 2.5%
[hmm] Running HMM Method... 5.0%
[hmm] Running HMM Method... 7.5%
[hmm] Running HMM Method... 10.0%
[hmm] Running HMM Method... 12.5%
[hmm] Running HMM Method... 15.0%
[hmm] Running HMM Method... 17.5%
[hmm] Running HMM Method... 20.0%
[hmm] Running HMM Method... 22.5%
[hmm] Running HMM Method... 25.0%
[hmm] Running HMM Method... 27.5%
[hmm] Running HMM Method... 30.0%
[hmm] Running HMM Method... 32.5%
[hmm] Running HMM Method... 35.0%
[hmm] Running HMM Method... 37.5%
[hmm] Running HMM Method... 40.0%
[hmm] Running HMM Method... 42.5%
[hmm] Running HMM Method... 45.0%
[hmm] Running HMM Method... 47.5%
[hmm] Running HMM Method... 50.0%
[hmm] Running HMM Method... 50.0%
[hmm] Running HMM Method... 52.5%
[hmm] Running HMM Method... 55.0%
[hmm] Running HMM Method... 57.5%
[hmm] Running HMM Method... 60.0%
[hmm] Running HMM Method... 62.5%
[hmm] Running HMM Method... 65.0%
[hmm] Running HMM Method... 67.5%
[hmm] Running HMM Method... 70.0%
[hmm] Running HMM Method... 72.5%
[hmm] Running HMM Method... 75.0%
[hmm] Running HMM Method... 77.5%
[hmm] Running HMM Method... 80.0%
[hmm] Running HMM Method... 82.5%
[hmm] Running HMM Method... 85.0%
[hmm] Running HMM Method... 87.5%
[hmm] Running HMM Method... 90.0%
[hmm] Running HMM Method... 92.5%
[hmm] Running HMM Method... 95.0%
[hmm] Running HMM Method... 97.5%
ok
test_anova (tests.test_analysis_methods.TestMethods.test_anova) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:84: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/samples_metadata_cg.txt' mode='r' encoding='UTF-8'>
for line in open(metadata_file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[hmm]
[hmm] Finished HMM - Sites Method
[hmm] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt.sites.txt
[hmm] Creating HMM Genes Level Output
[hmm] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt.genes.txt
[hmm] Finished HMM Method
####################
tests.test_analysis_methods.TestMethods.test_anova
####################
[anova] Starting Anova analysis
[anova] Getting Data
[anova] Normalizing using: TTR
[anova] Running Anova
[anova] Running Anova Method... 2.0%
[anova] Running Anova Method... 3.9%
[anova] Running Anova Method... 5.9%
[anova] Running Anova Method... 7.8%
[anova] Running Anova Method... 9.8%
[anova] Running Anova Method... 11.8%
[anova] Running Anova Method... 13.7%
[anova] Running Anova Method... 15.7%
[anova] Running Anova Method... 17.6%
[anova] Running Anova Method... 19.6%
[anova] Running Anova Method... 21.6%
[anova] Running Anova Method... 23.5%
[anova] Running Anova Method... 25.5%
[anova] Running Anova Method... 27.5%
[anova] Running Anova Method... 29.4%
[anova] Running Anova Method... 31.4%
[anova] Running Anova Method... 33.3%
[anova] Running Anova Method... 35.3%
[anova] Running Anova Method... 37.3%
[anova] Running Anova Method... 39.2%
[anova] Running Anova Method... 41.2%
[anova] Running Anova Method... 43.1%
[anova] Running Anova Method... 45.1%
[anova] Running Anova Method... 47.1%
[anova] Running Anova Method... 49.0%
[anova] Running Anova Method... 51.0%
[anova] Running Anova Method... 52.9%
[anova] Running Anova Method... 54.9%
[anova] Running Anova Method... 56.9%
[anova] Running Anova Method... 58.8%
[anova] Running Anova Method... 60.8%
[anova] Running Anova Method... 62.7%
[anova] Running Anova Method... 64.7%
[anova] Running Anova Method... 66.7%
[anova] Running Anova Method... 68.6%
[anova] Running Anova Method... 70.6%
[anova] Running Anova Method... 72.5%
[anova] Running Anova Method... 74.5%
[anova] Running Anova Method... 76.5%
[anova] Running Anova Method... 78.4%
[anova] Running Anova Method... 80.4%
[anova] Running Anova Method... 82.4%
[anova] Running Anova Method... 84.3%
[anova] Running Anova Method... 86.3%
[anova] Running Anova Method... 88.2%
[anova] Running Anova Method... 90.2%
[anova] Running Anova Method... 92.2%
[anova] Running Anova Method... 94.1%
[anova] Running Anova Method... 96.1%
[anova] Running Anova Method... 98.0%
[anova] Running Anova Method... 100.0%
/<<PKGBUILDDIR>>/tests/transit_test.py:89: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling (tests.test_analysis_methods.TestMethods.test_resampling) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
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/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
for line in open(path):
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/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1290: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
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/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1217: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
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/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:521: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[anova] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[anova] Finished Anova analysis
[anova] Time: 0.6s
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Performing LOESS Correction
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Performing LOESS Correction
[resampling] Running Resampling Method... 2.0%
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[resampling] Running Resampling Method... 96.1%
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[resampling] Running Resampling Method... 100.0%
/<<PKGBUILDDIR>>/tests/transit_test.py:89: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling_adaptive (tests.test_analysis_methods.TestMethods.test_resampling_adaptive) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 35
[resampling] Time: 13.32s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_adaptive
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
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[resampling] Running Resampling Method... 11.8%
[resampling] Running Resampling Method... 13.7%
[resampling] Running Resampling Method... 15.7%
[resampling] Running Resampling Method... 17.6%
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[resampling] Running Resampling Method... 25.5%
[resampling] Running Resampling Method... 27.5%
[resampling] Running Resampling Method... 29.4%
[resampling] Running Resampling Method... 31.4%
[resampling] Running Resampling Method... 33.3%
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[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_resampling_combined_wig (tests.test_analysis_methods.TestMethods.test_resampling_combined_wig) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:84: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/samples_metadata_cg.txt' mode='r' encoding='UTF-8'>
for line in open(metadata_file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 35
[resampling] Time: 8.68s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_combined_wig
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
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[resampling] Running Resampling Method... 25.5%
[resampling] Running Resampling Method... 27.5%
[resampling] Running Resampling Method... 29.4%
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FAIL
test_resampling_histogram (tests.test_analysis_methods.TestMethods.test_resampling_histogram) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 33
[resampling] Time: 7.36s
[resampling] Finished resampling Method
37
33
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_histogram
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
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[resampling] Running Resampling Method... 43.1%
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[resampling] Running Resampling Method... 52.9%
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[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_resampling_multistrain (tests.test_analysis_methods.TestMethods.test_resampling_multistrain) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 35
[resampling] Time: 13.95s
[resampling] Finished resampling Method
Removing histogram files
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_multistrain
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Multiple annotation files found
[resampling] Mapping ctrl data to /<<PKGBUILDDIR>>/tests/data/test.prot_table, exp data to /<<PKGBUILDDIR>>/tests/data/test.prot_table
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
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[resampling] Running Resampling Method... 13.7%
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[resampling] Running Resampling Method... 82.4%
[resampling] Running Resampling Method... 84.3%
[resampling] Running Resampling Method... 86.3%
[resampling] Running Resampling Method... 88.2%
[resampling] Running Resampling Method... 90.2%
[resampling] Running Resampling Method... 92.2%
[resampling] Running Resampling Method... 94.1%
[resampling] Running Resampling Method... 96.1%
[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_utest (tests.test_analysis_methods.TestMethods.test_utest) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 35
[resampling] Time: 26.64s
[resampling] Finished resampling Method
Removing histogram files
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_utest
####################
[utest] Starting Mann-Whitney U-test Method
[utest] Getting Data
[utest] Normalizing using: TTR
[utest] Running Mann-Whitney U-test Method... 2.0%
[utest] Running Mann-Whitney U-test Method... 3.9%
[utest] Running Mann-Whitney U-test Method... 5.9%
[utest] Running Mann-Whitney U-test Method... 7.8%
[utest] Running Mann-Whitney U-test Method... 9.8%
[utest] Running Mann-Whitney U-test Method... 11.8%
[utest] Running Mann-Whitney U-test Method... 13.7%
[utest] Running Mann-Whitney U-test Method... 15.7%
[utest] Running Mann-Whitney U-test Method... 17.6%
[utest] Running Mann-Whitney U-test Method... 19.6%
[utest] Running Mann-Whitney U-test Method... 21.6%
[utest] Running Mann-Whitney U-test Method... 23.5%
[utest] Running Mann-Whitney U-test Method... 25.5%
[utest] Running Mann-Whitney U-test Method... 27.5%
[utest] Running Mann-Whitney U-test Method... 29.4%
[utest] Running Mann-Whitney U-test Method... 31.4%
[utest] Running Mann-Whitney U-test Method... 33.3%
[utest] Running Mann-Whitney U-test Method... 35.3%
[utest] Running Mann-Whitney U-test Method... 37.3%
[utest] Running Mann-Whitney U-test Method... 39.2%
[utest] Running Mann-Whitney U-test Method... 41.2%
[utest] Running Mann-Whitney U-test Method... 43.1%
[utest] Running Mann-Whitney U-test Method... 45.1%
[utest] Running Mann-Whitney U-test Method... 47.1%
[utest] Running Mann-Whitney U-test Method... 49.0%
[utest] Running Mann-Whitney U-test Method... 51.0%
[utest] Running Mann-Whitney U-test Method... 52.9%
[utest] Running Mann-Whitney U-test Method... 54.9%
[utest] Running Mann-Whitney U-test Method... 56.9%
[utest] Running Mann-Whitney U-test Method... 58.8%
[utest] Running Mann-Whitney U-test Method... 60.8%
[utest] Running Mann-Whitney U-test Method... 62.7%
[utest] Running Mann-Whitney U-test Method... 64.7%
[utest] Running Mann-Whitney U-test Method... 66.7%
[utest] Running Mann-Whitney U-test Method... 68.6%
[utest] Running Mann-Whitney U-test Method... 70.6%
[utest] Running Mann-Whitney U-test Method... 72.5%
[utest] Running Mann-Whitney U-test Method... 74.5%
[utest] Running Mann-Whitney U-test Method... 76.5%
[utest] Running Mann-Whitney U-test Method... 78.4%
[utest] Running Mann-Whitney U-test Method... 80.4%
[utest] Running Mann-Whitney U-test Method... 82.4%
[utest] Running Mann-Whitney U-test Method... 84.3%
[utest] Running Mann-Whitney U-test Method... 86.3%
[utest] Running Mann-Whitney U-test Method... 88.2%
[utest] Running Mann-Whitney U-test Method... 90.2%
[utest] Running Mann-Whitney U-test Method... 92.2%
[utest] Running Mann-Whitney U-test Method... 94.1%
[utest] Running Mann-Whitney U-test Method... 96.1%
[utest] Running Mann-Whitney U-test Method... 98.0%
[utest] Running Mann-Whitney U-test Method... 100.0%
ok
test_zinb (tests.test_analysis_methods.TestMethods.test_zinb) ... skipped 'requires R, rpy2'
test_zinb_covariates (tests.test_analysis_methods.TestMethods.test_zinb_covariates) ... skipped 'requires R, rpy2'
test_zinb_interactions (tests.test_analysis_methods.TestMethods.test_zinb_interactions) ... skipped 'requires R, rpy2'
test_TTR (tests.test_norm_methods.TestNormMethods.test_TTR) ... ok
test_nonorm (tests.test_norm_methods.TestNormMethods.test_nonorm) ... ok
test_resampling_NZMean (tests.test_norm_methods.TestNormMethods.test_resampling_NZMean) ... [utest]
[utest] Performing Benjamini-Hochberg Correction
[utest] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[utest] Finished Mann-Whitney U-test Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_TTR
####################
####################
tests.test_norm_methods.TestNormMethods.test_nonorm
####################
####################
tests.test_norm_methods.TestNormMethods.test_resampling_NZMean
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: nzmean
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: nzmean
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
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[resampling] Running Resampling Method... 100.0%
ok
test_resampling_Quantile (tests.test_norm_methods.TestNormMethods.test_resampling_Quantile) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 1.49s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_Quantile
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: quantile
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: quantile
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
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[resampling] Running Resampling Method... 100.0%
/<<PKGBUILDDIR>>/tests/transit_test.py:75: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling_TTR (tests.test_norm_methods.TestNormMethods.test_resampling_TTR) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 1.93s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_TTR
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
[resampling] Running Resampling Method... 9.8%
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ok
test_resampling_TotReads (tests.test_norm_methods.TestNormMethods.test_resampling_TotReads) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 1.57s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_TotReads
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: totreads
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: totreads
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
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[resampling] Running Resampling Method... 100.0%
ok
test_resampling_ZINFNB (tests.test_norm_methods.TestNormMethods.test_resampling_ZINFNB) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 1.49s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_ZINFNB
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: zinfnb
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: zinfnb
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
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[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_resampling_nonorm (tests.test_norm_methods.TestNormMethods.test_resampling_nonorm) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 5.97s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_nonorm
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Preprocessing Exp data...
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
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[resampling] Running Resampling Method... 25.5%
[resampling] Running Resampling Method... 27.5%
[resampling] Running Resampling Method... 29.4%
[resampling] Running Resampling Method... 31.4%
[resampling] Running Resampling Method... 33.3%
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[resampling] Running Resampling Method... 68.6%
[resampling] Running Resampling Method... 70.6%
[resampling] Running Resampling Method... 72.5%
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[resampling] Running Resampling Method... 76.5%
[resampling] Running Resampling Method... 78.4%
[resampling] Running Resampling Method... 80.4%
[resampling] Running Resampling Method... 82.4%
[resampling] Running Resampling Method... 84.3%
[resampling] Running Resampling Method... 86.3%
[resampling] Running Resampling Method... 88.2%
[resampling] Running Resampling Method... 90.2%
[resampling] Running Resampling Method... 92.2%
[resampling] Running Resampling Method... 94.1%
[resampling] Running Resampling Method... 96.1%
[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_cleanargs_flag_arguments_w_quotes (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_w_quotes) ... ok
test_cleanargs_flag_arguments_with_double_dash (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_with_double_dash) ... ok
test_cleanargs_flag_without_arguments (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_without_arguments) ... ok
test_cleanargs_negative_arguments (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_negative_arguments) ... ok
test_cleanargs_positional_arguments (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments) ... ok
test_cleanargs_positional_arguments_w_quotes (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments_w_quotes) ... ok
test_file_types (tests.test_pytransit_tools.TestTnSeqTools.test_file_types) ... ok
test_genes_creation_fromdata (tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromdata) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1290: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1217: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:521: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_genes_creation_fromwig (tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromwig) ... ok
test_normalization (tests.test_pytransit_tools.TestTnSeqTools.test_normalization) ... ok
test_read_data (tests.test_pytransit_tools.TestTnSeqTools.test_read_data) ... ok
test_tpp_flag_primer (tests.test_tpp.TestTPP.test_tpp_flag_primer) ... skipped 'requires local data file'
test_tpp_multicontig_auto_replicon_ids (tests.test_tpp.TestTPP.test_tpp_multicontig_auto_replicon_ids) ... [tn_preprocess] running pre-processing on /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq and
[tn_preprocess] protocol: Sassetti
[tn_preprocess] transposon type: Himar1
[tn_preprocess] One reference genome specified: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna, containing 3 records.
[tn_preprocess] Autogenerating replicon_ids...
[tn_preprocess] extracting reads...
[tn_preprocess] fastq2reads: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq -> /<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:85: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq' mode='r' encoding='UTF-8'>
for line in open(infile):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] assuming single-ended reads
[tn_preprocess] creating /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1
[tn_preprocess] prefix sequence:
[tn_preprocess] Looking for start of Tn prefix within P,Q = [0,20]
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:285: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'>
for line in open(infile):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] mapping reads using BWA...(this takes a couple of minutes)
[tn_preprocess] /usr/bin/bwa index /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
b'[bwa_index] Pack FASTA... 0.06 sec'
b'[bwa_index] Construct BWT for the packed sequence...'
b'[bwa_index] 2.44 seconds elapse.'
b'[bwa_index] Update BWT... 0.05 sec'
b'[bwa_index] Pack forward-only FASTA... 0.05 sec'
b'[bwa_index] Construct SA from BWT and Occ... 2.94 sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa index /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna'
b'[main] Real time: 5.597 sec; CPU: 5.545 sec'
b''
[tn_preprocess] /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1 > /<<PKGBUILDDIR>>/tests/test_tpp_temp.sam
b'[M::bwa_idx_load_from_disk] read 0 ALT contigs'
b'[M::process] read 2500 sequences (304052 bp)...'
b'[M::mem_process_seqs] Processed 2500 reads in 0.260 CPU sec, 0.260 real sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1'
b'[main] Real time: 0.278 sec; CPU: 0.275 sec'
b''
[tn_preprocess] tabulating template counts and statistics for reference genome /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:387: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test-multicontig.fna' mode='r' encoding='UTF-8'>
for line in open(filename):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.sam' mode='r' encoding='UTF-8'>
for line in open(sam):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_1.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_2.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_3.wig
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1118: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'>
read_length = get_read_length(vars.base + ".reads1")
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1119: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1' mode='r' encoding='UTF-8'>
mean_r1_genomic = get_genomic_portion(vars.base + ".trimmed1")
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1197: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1' mode='r' encoding='UTF-8'>
for line in open(vars.trimmed1):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp.tn_stats
[tn_preprocess] Done.
ok
test_tpp_multicontig_empty_prefix (tests.test_tpp.TestTPP.test_tpp_multicontig_empty_prefix) ... [tn_preprocess] running pre-processing on /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq and
[tn_preprocess] protocol: Sassetti
[tn_preprocess] transposon type: Himar1
[tn_preprocess] One reference genome specified: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna, containing 3 records.
[tn_preprocess] extracting reads...
[tn_preprocess] fastq2reads: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq -> /<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1
[tn_preprocess] assuming single-ended reads
[tn_preprocess] creating /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1
[tn_preprocess] prefix sequence:
[tn_preprocess] Looking for start of Tn prefix within P,Q = [0,20]
[tn_preprocess] mapping reads using BWA...(this takes a couple of minutes)
[tn_preprocess] /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1 > /<<PKGBUILDDIR>>/tests/test_tpp_temp.sam
b'[M::bwa_idx_load_from_disk] read 0 ALT contigs'
b'[M::process] read 2500 sequences (304052 bp)...'
b'[M::mem_process_seqs] Processed 2500 reads in 0.261 CPU sec, 0.261 real sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1'
b'[main] Real time: 0.280 sec; CPU: 0.276 sec'
b''
[tn_preprocess] tabulating template counts and statistics for reference genome /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_a.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_b.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_c.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp.tn_stats
[tn_preprocess] Done.
ok
test_tpp_noflag_primer (tests.test_tpp.TestTPP.test_tpp_noflag_primer) ... skipped 'requires local data file'
test_tpp_protocol_mme1 (tests.test_tpp.TestTPP.test_tpp_protocol_mme1) ... skipped 'requires local data file'
======================================================================
FAIL: test_resampling_combined_wig (tests.test_analysis_methods.TestMethods.test_resampling_combined_wig)
----------------------------------------------------------------------
Traceback (most recent call last):
File "/<<PKGBUILDDIR>>/tests/test_analysis_methods.py", line 98, in test_resampling_combined_wig
self.assertLessEqual(
AssertionError: 2 not less than or equal to 1 : sig_qvals expected in range: [34, 36], actual: 33
----------------------------------------------------------------------
Ran 39 tests in 135.383s
FAILED (failures=1, skipped=6)
[resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 1.50s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_w_quotes
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_with_double_dash
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_without_arguments
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_negative_arguments
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments_w_quotes
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_file_types
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromdata
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromwig
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_normalization
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_read_data
####################
####################
tests.test_tpp.TestTPP.test_tpp_multicontig_auto_replicon_ids
####################
/<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# title: Tn-Seq Pre-Processor
# date: 11/07/2023 16:42:08
# command: python python3.11 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py
# transposon type: Himar1
# protocol type: Sassetti
# bwa flags:
# read1: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# read2:
# ref_genome: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
# replicon_ids: 1,2,3
# total_reads (or read pairs): 2500
# truncated_reads 156 (genomic inserts shorter than the read length; ADAP2 appears in read1)
# trimmed_reads (reads with valid Tn prefix, and insert size>20bp): 2512
# reads1_mapped: 2116
# reads2_mapped: 0
# mapped_reads (both R1 and R2 map into genome, and R2 has a proper barcode): 2116
# read_count (TA sites only, for Himar1):
# 1: 63
# 2: 0
# 3: 0
# template_count:
# 1: 63
# 2: 0
# 3: 0
# template_ratio (reads per template):
# 1: 1.00
# 2: 0.00
# 3: 0.00
# TA_sites:
# 1: 89994
# 2: 646
# 3: 664
# TAs_hit:
# 1: 63
# 2: 0
# 3: 0
# density:
# 1: 0.001
# 2: 0.000
# 3: 0.000
# max_count (among templates):
# 1: 1
# 2: 0
# 3: 0
# max_site (coordinate):
# 1: 4977050
# 2: 57441
# 3: 38111
# NZ_mean (among templates):
# 1: 1.0
# 2: 0.0
# 3: 0.0
# FR_corr (Fwd templates vs. Rev templates):
# 1: -0.000
# 2: nan
# 3: nan
# BC_corr (reads vs. templates, summed over both strands):
# 1: nan
# 2: nan
# 3: nan
# Break-down of total reads (2500):
# -12 reads (-0.5%) lack the expected Tn prefix
# Break-down of trimmed reads with valid Tn prefix (2500):
# primer_matches: 36 reads (1.4%) contain CTAGAGGGCCCAATTCGCCCTATAGTGAGT (Himar1)
# vector_matches: 36 reads (1.4%) contain CTAGACCGTCCAGTCTGGCAGGCCGGAAAC (phiMycoMarT7)
# adapter_matches: 14 reads (0.6%) contain GATCGGAAGAGCACACGTCTGAACTCCAGTCAC (Illumina/TruSeq index)
# misprimed_reads: 17 reads (0.7%) contain Himar1 prefix but don't end in TGTTA
# read_length: 125 bp
# mean_R1_genomic_length: 121.6 bp
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
####################
tests.test_tpp.TestTPP.test_tpp_multicontig_empty_prefix
####################
/<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# title: Tn-Seq Pre-Processor
# date: 11/07/2023 16:42:10
# command: python python3.11 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py
# transposon type: Himar1
# protocol type: Sassetti
# bwa flags:
# read1: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# read2:
# ref_genome: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
# replicon_ids: a,b,c
# total_reads (or read pairs): 2500
# truncated_reads 156 (genomic inserts shorter than the read length; ADAP2 appears in read1)
# trimmed_reads (reads with valid Tn prefix, and insert size>20bp): 2512
# reads1_mapped: 2116
# reads2_mapped: 0
# mapped_reads (both R1 and R2 map into genome, and R2 has a proper barcode): 2116
# read_count (TA sites only, for Himar1):
# a: 63
# b: 0
# c: 0
# template_count:
# a: 63
# b: 0
# c: 0
# template_ratio (reads per template):
# a: 1.00
# b: 0.00
# c: 0.00
# TA_sites:
# a: 89994
# b: 646
# c: 664
# TAs_hit:
# a: 63
# b: 0
# c: 0
# density:
# a: 0.001
# b: 0.000
# c: 0.000
# max_count (among templates):
# a: 1
# b: 0
# c: 0
# max_site (coordinate):
# a: 4977050
# b: 57441
# c: 38111
# NZ_mean (among templates):
# a: 1.0
# b: 0.0
# c: 0.0
# FR_corr (Fwd templates vs. Rev templates):
# a: -0.000
# b: nan
# c: nan
# BC_corr (reads vs. templates, summed over both strands):
# a: nan
# b: nan
# c: nan
# Break-down of total reads (2500):
# -12 reads (-0.5%) lack the expected Tn prefix
# Break-down of trimmed reads with valid Tn prefix (2500):
# primer_matches: 36 reads (1.4%) contain CTAGAGGGCCCAATTCGCCCTATAGTGAGT (Himar1)
# vector_matches: 36 reads (1.4%) contain CTAGACCGTCCAGTCTGGCAGGCCGGAAAC (phiMycoMarT7)
# adapter_matches: 14 reads (0.6%) contain GATCGGAAGAGCACACGTCTGAACTCCAGTCAC (Illumina/TruSeq index)
# misprimed_reads: 17 reads (0.7%) contain Himar1 prefix but don't end in TGTTA
# read_length: 125 bp
# mean_R1_genomic_length: 121.6 bp
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
E: pybuild pybuild:395: test: plugin custom failed with: exit code=1: PYTHONPATH=tests python3.11 -m unittest -v tests/*.py
dh_auto_test: error: pybuild --test -i python{version} -p 3.11 --system=custom "--test-args=PYTHONPATH=tests {interpreter} -m unittest -v tests/*.py" returned exit code 13
make[1]: *** [debian/rules:25: override_dh_auto_test] Error 25
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
make: *** [debian/rules:9: binary-arch] Error 2
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2023-11-07T16:42:10Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 285584
Build-Time: 144
Distribution: trixie-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 122
Job: tnseq-transit_3.3.2-1
Machine Architecture: arm64
Package: tnseq-transit
Package-Time: 280
Source-Version: 3.3.2-1
Space: 285584
Status: attempted
Version: 3.3.2-1
--------------------------------------------------------------------------------
Finished at 2023-11-07T16:42:10Z
Build needed 00:04:40, 285584k disk space