tnseq-transit →
3.3.0-1 →
armhf → 2023-09-15 21:40:15
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| tnseq-transit 3.3.0-1 (armhf) Fri, 15 Sep 2023 20:34:22 +0000 |
+==============================================================================+
Package: tnseq-transit
Version: 3.3.0-1
Source Version: 3.3.0-1
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-9e16a477-e8a0-41a0-8331-f4c885233a09' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.6 MB]
Fetched 28.7 MB in 29s (975 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'tnseq-transit' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/tnseq-transit.git
Please use:
git clone https://salsa.debian.org/med-team/tnseq-transit.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 39.3 MB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main tnseq-transit 3.3.0-1 (dsc) [2370 B]
Get:2 http://172.17.4.1/private trixie-staging/main tnseq-transit 3.3.0-1 (tar) [39.2 MB]
Get:3 http://172.17.4.1/private trixie-staging/main tnseq-transit 3.3.0-1 (diff) [6508 B]
Fetched 39.3 MB in 3s (11.4 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tnseq-transit-AbZeEG/tnseq-transit-3.3.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tnseq-transit-AbZeEG' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-tgoPDY/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-tgoPDY/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-tgoPDY/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ Packages [430 B]
Fetched 2106 B in 1s (2675 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (23.1 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11771 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-sklearn, python3-statsmodels, python3-pubsub, bwa
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-sklearn, python3-statsmodels, python3-pubsub, bwa
dpkg-deb: building package 'sbuild-build-depends-tnseq-transit-dummy' in '/<<BUILDDIR>>/resolver-tgoPDY/apt_archive/sbuild-build-depends-tnseq-transit-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-tnseq-transit-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ Sources [573 B]
Get:5 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ Packages [643 B]
Fetched 2549 B in 1s (3604 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install tnseq-transit build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sgml-base
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils bwa debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core fonts-dejavu-mono fonts-lyx gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0
libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu72
libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4
libmagic-mgc libmagic1 libopenjp2-7 libpipeline1 libpng16-16 libproc2-0
libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev
libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0
libsub-override-perl libtcl8.6 libtiff6 libtk8.6 libtool libuchardet0
libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4 mailcap
man-db media-types mime-support po-debconf procps python-matplotlib-data
python3 python3-appdirs python3-attr python3-brotli python3-contourpy
python3-cycler python3-dateutil python3-decorator python3-dev
python3-distutils python3-fonttools python3-fs python3-joblib
python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-patsy
python3-pil python3-pil.imagetk python3-pkg-resources python3-pubsub
python3-pyparsing python3-scipy python3-setuptools python3-six
python3-sklearn python3-sklearn-lib python3-statsmodels
python3-statsmodels-lib python3-sympy python3-threadpoolctl python3-tk
python3-tz python3-ufolib2 python3-unicodedata2 python3.11 python3.11-dev
python3.11-minimal tk8.6-blt2.5 unicode-data x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo samtools dh-make flit
python3-build python3-installer python3-wheel gettext-doc libasprintf-dev
libgettextpo-dev groff low-memory-monitor libjs-jquery-ui-docs
liblcms2-utils tcl8.6 tk8.6 libtool-doc gfortran | fortran95-compiler
gcj-jdk m4-doc apparmor less www-browser libmail-box-perl python3-doc
python3-venv python-attr-doc python-cycler-doc python-lxml-doc
cm-super-minimal dvipng ffmpeg fonts-staypuft ghostscript gir1.2-gtk-3.0
inkscape ipython3 librsvg2-common python3-cairocffi python3-gi
python3-gi-cairo python3-gobject python3-pyqt5 python3-sip python3-tornado
texlive-extra-utils texlive-latex-extra python-mpmath-doc python3-gmpy2
gfortran python3-pytest python-pandas-doc python-patsy-doc python-pil-doc
python-pyparsing-doc python-scipy-doc python-setuptools-doc python3-dap
python-sklearn-doc python-statsmodels-doc texlive-fonts-extra
python-sympy-doc tix python3-tk-dbg python3.11-venv python3.11-doc
binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl psmisc
python3-pytest python3-simplejson python3-psutil python3-bs4
python3-html5lib python3-bottleneck python3-numexpr python3-odf
python3-openpyxl python3-tables python3-jinja2 python3-olefile python3-nose
python3-colorama python3-cvxopt isympy-common ca-certificates
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils bwa debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core fonts-dejavu-mono fonts-lyx gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libblas3 libbrotli1 libbsd0
libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu72
libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery libjs-jquery-ui
libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 liblerc4
libmagic-mgc libmagic1 libopenjp2-7 libpipeline1 libpng16-16 libproc2-0
libpython3-dev libpython3-stdlib libpython3.11 libpython3.11-dev
libpython3.11-minimal libpython3.11-stdlib libqhull-r8.0 libraqm0
libsub-override-perl libtcl8.6 libtiff6 libtk8.6 libtool libuchardet0
libwebp7 libwebpdemux2 libwebpmux3 libx11-6 libx11-data libxau6 libxcb1
libxdmcp6 libxext6 libxft2 libxml2 libxrender1 libxslt1.1 libxss1 m4 mailcap
man-db media-types mime-support po-debconf procps python-matplotlib-data
python3 python3-appdirs python3-attr python3-brotli python3-contourpy
python3-cycler python3-dateutil python3-decorator python3-dev
python3-distutils python3-fonttools python3-fs python3-joblib
python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-patsy
python3-pil python3-pil.imagetk python3-pkg-resources python3-pubsub
python3-pyparsing python3-scipy python3-setuptools python3-six
python3-sklearn python3-sklearn-lib python3-statsmodels
python3-statsmodels-lib python3-sympy python3-threadpoolctl python3-tk
python3-tz python3-ufolib2 python3-unicodedata2 python3.11 python3.11-dev
python3.11-minimal sbuild-build-depends-tnseq-transit-dummy tk8.6-blt2.5
unicode-data x11-common zlib1g-dev
0 upgraded, 143 newly installed, 0 to remove and 5 not upgraded.
Need to get 107 MB of archives.
After this operation, 463 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-tgoPDY/apt_archive ./ sbuild-build-depends-tnseq-transit-dummy 0.invalid.0 [928 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.2-6 [797 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.2-6 [1679 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.2-1 [26.0 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf mailcap all 3.70+nmu1 [32.0 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.2-6 [1668 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.2-6 [572 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.2-1 [9012 B]
Get:12 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.2-1 [26.0 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.22.4-10 [774 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.38.1-5 [78.5 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-2 [1342 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libproc2-0 armhf 2:4.0.2-3 [53.6 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf procps armhf 2:4.0.2-3 [679 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-12 [156 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-3 [256 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
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Get:32 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-5 [329 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.1-4 [315 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.1-4 [366 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-2 [112 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.6-1 [323 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.4-2+deb12u1 [691 kB]
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Get:44 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf bwa armhf 0.7.17-7 [196 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
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Get:58 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
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Get:61 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3~deb12u1 [570 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-12 [1201 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB]
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Get:69 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20230825 [106 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf fonts-lyx all 2.3.7-1 [186 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
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Get:75 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.74.6-1 [1203 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1894 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libjs-sphinxdoc all 5.3.0-7 [131 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.4-1 [24.4 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf liblcms2-2 armhf 2.14-2 [124 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libopenjp2-7 armhf 2.5.0-2 [164 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libpython3.11 armhf 3.11.2-6 [1667 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-dev armhf 3.11.2-6 [3364 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libpython3-dev armhf 3.11.2-1 [9248 B]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libqhull-r8.0 armhf 2020.2-5 [221 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libraqm0 armhf 0.7.0-4.1 [9176 B]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.2.4-0.2 [242 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.0-6 [293 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libwebpdemux2 armhf 1.2.4-0.2 [98.4 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libwebpmux3 armhf 1.2.4-0.2 [106 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libxslt1.1 armhf 1.1.35-1 [221 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf python-matplotlib-data all 3.6.3-1 [2744 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf python3-appdirs all 1.4.4-4 [12.5 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf python3-attr all 23.1.0-2 [67.1 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf python3-brotli armhf 1.0.9-2+b3 [278 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-1 [241 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf python3-numpy armhf 1:1.24.2-1 [3826 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf python3-contourpy armhf 1.0.7-1 [141 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:110 http://172.17.4.1/private trixie-staging/main armhf python3-six all 1.16.0-4 [17.5 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf python3-dateutil all 2.8.2-3 [78.4 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf python3-decorator all 5.1.1-4 [15.0 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf python3.11-dev armhf 3.11.2-6 [511 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf python3-dev armhf 3.11.2-1 [26.2 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf python3-scipy armhf 1.10.1-2+rpi1 [13.6 MB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf python3-ufolib2 all 0.14.0+dfsg1-1 [34.3 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf python3-sympy all 1.12-3 [3868 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf python3-tz all 2023.3-4 [30.8 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf python3-fs all 2.4.16-2 [95.2 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf python3-lxml armhf 4.9.2-1 [1528 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf python3-lz4 armhf 4.0.2+dfsg-1+b1 [23.9 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf python3-unicodedata2 armhf 14.0.0+ds2-1+b1 [298 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf unicode-data all 15.0.0-1 [7984 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf python3-fonttools armhf 4.38.0-1 [1047 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf python3-joblib all 1.2.0-4 [211 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf python3-kiwisolver armhf 1.4.4-1 [52.3 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf python3-pil armhf 10.0.0-1 [437 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf python3-tk armhf 3.11.2-3 [95.2 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf python3-pil.imagetk armhf 10.0.0-1 [75.2 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf python3-pyparsing all 3.1.1-1 [145 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf python3-packaging all 23.1-1 [37.4 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf python3-matplotlib armhf 3.6.3-1 [7453 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf python3-pandas-lib armhf 1.5.3+dfsg-2+rpi1 [2984 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf python3-pandas all 1.5.3+dfsg-6 [2886 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf python3-patsy all 0.5.3-1 [173 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf python3-pubsub all 4.0.3-7 [46.7 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-1 [468 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf python3-threadpoolctl all 3.1.0-1 [21.2 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf python3-sklearn-lib armhf 1.2.1+dfsg-1 [2061 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf python3-sklearn all 1.2.1+dfsg-1 [2103 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf python3-statsmodels-lib armhf 0.13.5+dfsg-7+rpi1 [1078 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf python3-statsmodels all 0.13.5+dfsg-7+rpi1 [4518 kB]
debconf: delaying package configuration, since apt-utils is not installed
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Setting up python3-scipy (1.10.1-2+rpi1) ...
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Processing triggers for sgml-base (1.31) ...
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Setting up blt (2.5.3+dfsg-4.1) ...
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Setting up python3-pil.imagetk:armhf (10.0.0-1) ...
Setting up python3-matplotlib (3.6.3-1) ...
Setting up sbuild-build-depends-tnseq-transit-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.6.1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_12.4+rpi1+deb12u1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 blt_2.5.3+dfsg-4.1 bsdextrautils_2.38.1-5 bsdutils_1:2.38.1-5 build-essential_12.9 bwa_0.7.17-7 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.6 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_6.20230825 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 fontconfig-config_2.14.1-4 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 fonts-lyx_2.3.7-1 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-12 gettext-base_0.21-12 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-3 libacl1_2.3.1-3 libapt-pkg6.0_2.6.1 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.0.9-1 libbinutils_2.40-2+rpi2 libblas3_3.11.0-2 libblkid1_2.38.1-5 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-9+rpi1+deb12u1 libc-dev-bin_2.36-9+rpi1+deb12u1 libc6_2.36-9+rpi1+deb12u1 libc6-dev_2.36-9+rpi1+deb12u1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_12.2.0-14+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.33-2 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libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3~deb12u1 libxrender1_1:0.9.10-1.1 libxslt1.1_1.1.35-1 libxss1_1:1.2.3-1 libxxhash0_0.8.1-1 libzstd1_1.5.4+dfsg2-5 linux-libc-dev_6.1.38-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-3 mailcap_3.70+nmu1 make_4.3-4.1 man-db_2.11.2-2 mawk_1.3.4.20200120-3.1 media-types_10.1.0 mime-support_3.66 mount_2.38.1-5 nano_7.2-1 ncurses-base_6.4+20230625-2 ncurses-bin_6.4-4 netbase_6.4 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 procps_2:4.0.2-3 python-matplotlib-data_3.6.3-1 python3_3.11.2-1 python3-appdirs_1.4.4-4 python3-attr_23.1.0-2 python3-brotli_1.0.9-2+b3 python3-contourpy_1.0.7-1 python3-cycler_0.11.0-1 python3-dateutil_2.8.2-3 python3-decorator_5.1.1-4 python3-dev_3.11.2-1 python3-distutils_3.11.5-1 python3-fonttools_4.38.0-1 python3-fs_2.4.16-2 python3-joblib_1.2.0-4 python3-kiwisolver_1.4.4-1 python3-lib2to3_3.11.5-1 python3-lxml_4.9.2-1 python3-lz4_4.0.2+dfsg-1+b1 python3-matplotlib_3.6.3-1 python3-minimal_3.11.2-1 python3-mpmath_1.2.1-2 python3-numpy_1:1.24.2-1 python3-packaging_23.1-1 python3-pandas_1.5.3+dfsg-6 python3-pandas-lib_1.5.3+dfsg-2+rpi1 python3-patsy_0.5.3-1 python3-pil_10.0.0-1 python3-pil.imagetk_10.0.0-1 python3-pkg-resources_68.1.2-1 python3-pubsub_4.0.3-7 python3-pyparsing_3.1.1-1 python3-scipy_1.10.1-2+rpi1 python3-setuptools_68.1.2-1 python3-six_1.16.0-4 python3-sklearn_1.2.1+dfsg-1 python3-sklearn-lib_1.2.1+dfsg-1 python3-statsmodels_0.13.5+dfsg-7+rpi1 python3-statsmodels-lib_0.13.5+dfsg-7+rpi1 python3-sympy_1.12-3 python3-threadpoolctl_3.1.0-1 python3-tk_3.11.2-3 python3-tz_2023.3-4 python3-ufolib2_0.14.0+dfsg1-1 python3-unicodedata2_14.0.0+ds2-1+b1 python3.11_3.11.2-6 python3.11-dev_3.11.2-6 python3.11-minimal_3.11.2-6 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tnseq-transit-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.06-4 tar_1.34+dfsg-1.2 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2023c-10 unicode-data_15.0.0-1 usrmerge_37 util-linux_2.38.1-5 util-linux-extra_2.38.1-5 x11-common_1:7.7+23 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Sun Aug 13 09:58:34 2023 UTC
gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: issuer "emollier@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./tnseq-transit_3.3.0-1.dsc: no acceptable signature found
dpkg-source: info: extracting tnseq-transit in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tnseq-transit_3.3.0.orig.tar.gz
dpkg-source: info: unpacking tnseq-transit_3.3.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip_test_requiring_non_existing_input_data.patch
dpkg-source: info: applying fix_problematic_comparison.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-9e16a477-e8a0-41a0-8331-f4c885233a09
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package tnseq-transit
dpkg-buildpackage: info: source version 3.3.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:291: python3.11 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2023-Sep-26, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
rm -rf tests_invalid_data
rm -rf tnseq_transit.egg-info
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p tests_invalid_data
mv tests/H37Rv.fna tests_invalid_data
dh_auto_configure
I: pybuild base:291: python3.11 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2023-Sep-26, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running config
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:291: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2023-Sep-26, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp
copying src/pytpp/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp
copying src/pytpp/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp
copying src/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp
copying src/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/images.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
copying src/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/CGI.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/anova.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/corrplot.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/gi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/heatmap.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/norm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/normalize.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/pathway_enrichment.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/tnseq_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/ttnfitness.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/utest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
copying src/pytransit/analysis/zinb.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/convert
copying src/pytransit/convert/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/convert
copying src/pytransit/convert/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/convert
copying src/pytransit/convert/gff_to_prot_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/convert
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/combined_wig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/igv.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/mean_counts.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
copying src/pytransit/export/prot_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export
running egg_info
creating tnseq_transit.egg-info
writing tnseq_transit.egg-info/PKG-INFO
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing requirements to tnseq_transit.egg-info/requires.txt
writing top-level names to tnseq_transit.egg-info/top_level.txt
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'VERSION'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
adding license file 'LICENSE.md'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pytransit.data' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'pytransit.data' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'pytransit.data' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'pytransit.data' to be distributed and are
already explicitly excluding 'pytransit.data' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pytransit.data.CGI' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'pytransit.data.CGI' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'pytransit.data.CGI' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'pytransit.data.CGI' to be distributed and are
already explicitly excluding 'pytransit.data.CGI' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pytransit.genomes' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'pytransit.genomes' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'pytransit.genomes' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'pytransit.genomes' to be distributed and are
already explicitly excluding 'pytransit.genomes' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/COG_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/GO_associated_Rvs.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/GO_term_names.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/H37Rv_COG_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/H37Rv_GO_terms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/H37Rv_sanger_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/README.md -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/cholesterol_glycerol_combined.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/gene_ontology.1_2.3-11-18.obo -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg_covar.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg_interactions.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/sanger_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/smeg_COG_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
copying src/pytransit/data/smeg_GO_terms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI
copying src/pytransit/data/CGI/IDs.H37Rv.CRISPRi.lib.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI
copying src/pytransit/data/CGI/counts_metadata.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI
copying src/pytransit/data/CGI/sgRNA_metadata.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI
copying src/pytransit/data/CGI/uninduced_ATC_counts.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test -- --system=custom --test-args="PYTHONPATH=tests {interpreter} -m unittest -v tests/*.py"
I: pybuild base:291: PYTHONPATH=tests python3.11 -m unittest -v tests/*.py
test_Binomial (tests.test_analysis_methods.TestMethods.test_Binomial) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1290: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1217: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:521: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
####################
tests.test_analysis_methods.TestMethods.test_Binomial
####################
[binomial] Starting Binomial Method
[binomial] Getting Data
[binomial] Setting Parameters
[binomial] Setting Initial Values
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[binomial] Running Binomial Method... 16.5%
[binomial] Running Binomial Method... 16.6%
[binomial] Running Binomial Method... 16.7%
[binomial] Running Binomial Method... 16.8%
[binomial] Running Binomial Method... 16.9%
[binomial] Running Binomial Method... 17.0%
[binomial] Running Binomial Method... 17.1%
[binomial] Running Binomial Method... 17.2%
[binomial] Running Binomial Method... 17.3%
[binomial] Running Binomial Method... 17.4%
[binomial] Running Binomial Method... 17.5%
[binomial] Running Binomial Method... 17.5%
[binomial] Running Binomial Method... 17.6%
[binomial] Running Binomial Method... 17.7%
[binomial] Running Binomial Method... 17.8%
[binomial] Running Binomial Method... 17.9%
[binomial] Running Binomial Method... 18.0%
[binomial] Running Binomial Method... 18.1%
[binomial] Running Binomial Method... 18.2%
[binomial] Running Binomial Method... 18.3%
[binomial] Running Binomial Method... 18.4%
[binomial] Running Binomial Method... 18.5%
[binomial] Running Binomial Method... 18.5%
[binomial] Running Binomial Method... 18.6%
[binomial] Running Binomial Method... 18.7%
[binomial] Running Binomial Method... 18.8%
[binomial] Running Binomial Method... 18.9%
[binomial] Running Binomial Method... 19.0%
[binomial] Running Binomial Method... 19.1%
[binomial] Running Binomial Method... 19.2%
[binomial] Running Binomial Method... 19.3%
[binomial] Running Binomial Method... 19.4%
[binomial] Running Binomial Method... 19.5%
[binomial] Running Binomial Method... 19.5%
[binomial] Running Binomial Method... 19.6%
[binomial] Running Binomial Method... 19.7%
[binomial] Running Binomial Method... 19.8%
[binomial] Running Binomial Method... 19.9%
[binomial] Running Binomial Method... 20.0%
[binomial] Running Binomial Method... 20.1%
[binomial] Running Binomial Method... 20.2%
[binomial] Running Binomial Method... 20.3%
[binomial] Running Binomial Method... 20.4%
[binomial] Running Binomial Method... 20.5%
[binomial] Running Binomial Method... 20.5%
[binomial] Running Binomial Method... 20.6%
[binomial] Running Binomial Method... 20.7%
[binomial] Running Binomial Method... 20.8%
[binomial] Running Binomial Method... 20.9%
[binomial] Running Binomial Method... 21.0%
[binomial] Running Binomial Method... 21.1%
[binomial] Running Binomial Method... 21.2%
[binomial] Running Binomial Method... 21.3%
[binomial] Running Binomial Method... 21.4%
[binomial] Running Binomial Method... 21.5%
[binomial] Running Binomial Method... 21.5%
[binomial] Running Binomial Method... 21.6%
[binomial] Running Binomial Method... 21.7%
[binomial] Running Binomial Method... 21.8%
[binomial] Running Binomial Method... 21.9%
[binomial] Running Binomial Method... 22.0%
[binomial] Running Binomial Method... 22.1%
[binomial] Running Binomial Method... 22.2%
[binomial] Running Binomial Method... 22.3%
[binomial] Running Binomial Method... 22.4%
[binomial] Running Binomial Method... 22.5%
[binomial] Running Binomial Method... 22.5%
[binomial] Running Binomial Method... 22.6%
[binomial] Running Binomial Method... 22.7%
[binomial] Running Binomial Method... 22.8%
[binomial] Running Binomial Method... 22.9%
[binomial] Running Binomial Method... 23.0%
[binomial] Running Binomial Method... 23.1%
[binomial] Running Binomial Method... 23.2%
[binomial] Running Binomial Method... 23.3%
[binomial] Running Binomial Method... 23.4%
[binomial] Running Binomial Method... 23.5%
[binomial] Running Binomial Method... 23.5%
[binomial] Running Binomial Method... 23.6%
[binomial] Running Binomial Method... 23.7%
[binomial] Running Binomial Method... 23.8%
[binomial] Running Binomial Method... 23.9%
[binomial] Running Binomial Method... 24.0%
[binomial] Running Binomial Method... 24.1%
[binomial] Running Binomial Method... 24.2%
[binomial] Running Binomial Method... 24.3%
[binomial] Running Binomial Method... 24.4%
[binomial] Running Binomial Method... 24.5%
[binomial] Running Binomial Method... 24.5%
[binomial] Running Binomial Method... 24.6%
[binomial] Running Binomial Method... 24.7%
[binomial] Running Binomial Method... 24.8%
[binomial] Running Binomial Method... 24.9%
[binomial] Running Binomial Method... 25.0%
[binomial] Running Binomial Method... 25.1%
[binomial] Running Binomial Method... 25.2%
[binomial] Running Binomial Method... 25.3%
[binomial] Running Binomial Method... 25.4%
[binomial] Running Binomial Method... 25.5%
[binomial] Running Binomial Method... 25.5%
[binomial] Running Binomial Method... 25.6%
[binomial] Running Binomial Method... 25.7%
[binomial] Running Binomial Method... 25.8%
[binomial] Running Binomial Method... 25.9%
[binomial] Running Binomial Method... 26.0%
[binomial] Running Binomial Method... 26.1%
[binomial] Running Binomial Method... 26.2%
[binomial] Running Binomial Method... 26.3%
[binomial] Running Binomial Method... 26.4%
[binomial] Running Binomial Method... 26.5%
[binomial] Running Binomial Method... 26.5%
[binomial] Running Binomial Method... 26.6%
[binomial] Running Binomial Method... 26.7%
[binomial] Running Binomial Method... 26.8%
[binomial] Running Binomial Method... 26.9%
[binomial] Running Binomial Method... 27.0%
[binomial] Running Binomial Method... 27.1%
[binomial] Running Binomial Method... 27.2%
[binomial] Running Binomial Method... 27.3%
[binomial] Running Binomial Method... 27.4%
[binomial] Running Binomial Method... 27.5%
[binomial] Running Binomial Method... 27.5%
[binomial] Running Binomial Method... 27.6%
[binomial] Running Binomial Method... 27.7%
[binomial] Running Binomial Method... 27.8%
[binomial] Running Binomial Method... 27.9%
[binomial] Running Binomial Method... 28.0%
[binomial] Running Binomial Method... 28.1%
[binomial] Running Binomial Method... 28.2%
[binomial] Running Binomial Method... 28.3%
[binomial] Running Binomial Method... 28.4%
[binomial] Running Binomial Method... 28.5%
[binomial] Running Binomial Method... 28.5%
[binomial] Running Binomial Method... 28.6%
[binomial] Running Binomial Method... 28.7%
[binomial] Running Binomial Method... 28.8%
[binomial] Running Binomial Method... 28.9%
[binomial] Running Binomial Method... 29.0%
[binomial] Running Binomial Method... 29.1%
[binomial] Running Binomial Method... 29.2%
[binomial] Running Binomial Method... 29.3%
[binomial] Running Binomial Method... 29.4%
[binomial] Running Binomial Method... 29.5%
[binomial] Running Binomial Method... 29.5%
[binomial] Running Binomial Method... 29.6%
[binomial] Running Binomial Method... 29.7%
[binomial] Running Binomial Method... 29.8%
[binomial] Running Binomial Method... 29.9%
[binomial] Running Binomial Method... 30.0%
[binomial] Running Binomial Method... 30.1%
[binomial] Running Binomial Method... 30.2%
[binomial] Running Binomial Method... 30.3%
[binomial] Running Binomial Method... 30.4%
[binomial] Running Binomial Method... 30.5%
[binomial] Running Binomial Method... 30.5%
[binomial] Running Binomial Method... 30.6%
[binomial] Running Binomial Method... 30.7%
[binomial] Running Binomial Method... 30.8%
[binomial] Running Binomial Method... 30.9%
[binomial] Running Binomial Method... 31.0%
[binomial] Running Binomial Method... 31.1%
[binomial] Running Binomial Method... 31.2%
[binomial] Running Binomial Method... 31.3%
[binomial] Running Binomial Method... 31.4%
[binomial] Running Binomial Method... 31.5%
[binomial] Running Binomial Method... 31.5%
[binomial] Running Binomial Method... 31.6%
[binomial] Running Binomial Method... 31.7%
[binomial] Running Binomial Method... 31.8%
[binomial] Running Binomial Method... 31.9%
[binomial] Running Binomial Method... 32.0%
[binomial] Running Binomial Method... 32.1%
[binomial] Running Binomial Method... 32.2%
[binomial] Running Binomial Method... 32.3%
[binomial] Running Binomial Method... 32.4%
[binomial] Running Binomial Method... 32.5%
[binomial] Running Binomial Method... 32.5%
[binomial] Running Binomial Method... 32.6%
[binomial] Running Binomial Method... 32.7%
[binomial] Running Binomial Method... 32.8%
[binomial] Running Binomial Method... 32.9%
[binomial] Running Binomial Method... 33.0%
[binomial] Running Binomial Method... 33.1%
[binomial] Running Binomial Method... 33.2%
[binomial] Running Binomial Method... 33.3%
[binomial] Running Binomial Method... 33.4%
[binomial] Running Binomial Method... 33.5%
[binomial] Running Binomial Method... 33.5%
[binomial] Running Binomial Method... 33.6%
[binomial] Running Binomial Method... 33.7%
[binomial] Running Binomial Method... 33.8%
[binomial] Running Binomial Method... 33.9%
[binomial] Running Binomial Method... 34.0%
[binomial] Running Binomial Method... 34.1%
[binomial] Running Binomial Method... 34.2%
[binomial] Running Binomial Method... 34.3%
[binomial] Running Binomial Method... 34.4%
[binomial] Running Binomial Method... 34.5%
[binomial] Running Binomial Method... 34.5%
[binomial] Running Binomial Method... 34.6%
[binomial] Running Binomial Method... 34.7%
[binomial] Running Binomial Method... 34.8%
[binomial] Running Binomial Method... 34.9%
[binomial] Running Binomial Method... 35.0%
[binomial] Running Binomial Method... 35.1%
[binomial] Running Binomial Method... 35.2%
[binomial] Running Binomial Method... 35.3%
[binomial] Running Binomial Method... 35.4%
[binomial] Running Binomial Method... 35.5%
[binomial] Running Binomial Method... 35.5%
[binomial] Running Binomial Method... 35.6%
[binomial] Running Binomial Method... 35.7%
[binomial] Running Binomial Method... 35.8%
[binomial] Running Binomial Method... 35.9%
[binomial] Running Binomial Method... 36.0%
[binomial] Running Binomial Method... 36.1%
[binomial] Running Binomial Method... 36.2%
[binomial] Running Binomial Method... 36.3%
[binomial] Running Binomial Method... 36.4%
[binomial] Running Binomial Method... 36.5%
[binomial] Running Binomial Method... 36.5%
[binomial] Running Binomial Method... 36.6%
[binomial] Running Binomial Method... 36.7%
[binomial] Running Binomial Method... 36.8%
[binomial] Running Binomial Method... 36.9%
[binomial] Running Binomial Method... 37.0%
[binomial] Running Binomial Method... 37.1%
[binomial] Running Binomial Method... 37.2%
[binomial] Running Binomial Method... 37.3%
[binomial] Running Binomial Method... 37.4%
[binomial] Running Binomial Method... 37.5%
[binomial] Running Binomial Method... 37.5%
[binomial] Running Binomial Method... 37.6%
[binomial] Running Binomial Method... 37.7%
[binomial] Running Binomial Method... 37.8%
[binomial] Running Binomial Method... 37.9%
[binomial] Running Binomial Method... 38.0%
[binomial] Running Binomial Method... 38.1%
[binomial] Running Binomial Method... 38.2%
[binomial] Running Binomial Method... 38.3%
[binomial] Running Binomial Method... 38.4%
[binomial] Running Binomial Method... 38.5%
[binomial] Running Binomial Method... 38.5%
[binomial] Running Binomial Method... 38.6%
[binomial] Running Binomial Method... 38.7%
[binomial] Running Binomial Method... 38.8%
[binomial] Running Binomial Method... 38.9%
[binomial] Running Binomial Method... 39.0%
[binomial] Running Binomial Method... 39.1%
[binomial] Running Binomial Method... 39.2%
[binomial] Running Binomial Method... 39.3%
[binomial] Running Binomial Method... 39.4%
[binomial] Running Binomial Method... 39.5%
[binomial] Running Binomial Method... 39.5%
[binomial] Running Binomial Method... 39.6%
[binomial] Running Binomial Method... 39.7%
[binomial] Running Binomial Method... 39.8%
[binomial] Running Binomial Method... 39.9%
[binomial] Running Binomial Method... 40.0%
[binomial] Running Binomial Method... 40.1%
[binomial] Running Binomial Method... 40.2%
[binomial] Running Binomial Method... 40.3%
[binomial] Running Binomial Method... 40.4%
[binomial] Running Binomial Method... 40.5%
[binomial] Running Binomial Method... 40.5%
[binomial] Running Binomial Method... 40.6%
[binomial] Running Binomial Method... 40.7%
[binomial] Running Binomial Method... 40.8%
[binomial] Running Binomial Method... 40.9%
[binomial] Running Binomial Method... 41.0%
[binomial] Running Binomial Method... 41.1%
[binomial] Running Binomial Method... 41.2%
[binomial] Running Binomial Method... 41.3%
[binomial] Running Binomial Method... 41.4%
[binomial] Running Binomial Method... 41.5%
[binomial] Running Binomial Method... 41.5%
[binomial] Running Binomial Method... 41.6%
[binomial] Running Binomial Method... 41.7%
[binomial] Running Binomial Method... 41.8%
[binomial] Running Binomial Method... 41.9%
[binomial] Running Binomial Method... 42.0%
[binomial] Running Binomial Method... 42.1%
[binomial] Running Binomial Method... 42.2%
[binomial] Running Binomial Method... 42.3%
[binomial] Running Binomial Method... 42.4%
[binomial] Running Binomial Method... 42.5%
[binomial] Running Binomial Method... 42.5%
[binomial] Running Binomial Method... 42.6%
[binomial] Running Binomial Method... 42.7%
[binomial] Running Binomial Method... 42.8%
[binomial] Running Binomial Method... 42.9%
[binomial] Running Binomial Method... 43.0%
[binomial] Running Binomial Method... 43.1%
[binomial] Running Binomial Method... 43.2%
[binomial] Running Binomial Method... 43.3%
[binomial] Running Binomial Method... 43.4%
[binomial] Running Binomial Method... 43.5%
[binomial] Running Binomial Method... 43.5%
[binomial] Running Binomial Method... 43.6%
[binomial] Running Binomial Method... 43.7%
[binomial] Running Binomial Method... 43.8%
[binomial] Running Binomial Method... 43.9%
[binomial] Running Binomial Method... 44.0%
[binomial] Running Binomial Method... 44.1%
[binomial] Running Binomial Method... 44.2%
[binomial] Running Binomial Method... 44.3%
[binomial] Running Binomial Method... 44.4%
[binomial] Running Binomial Method... 44.5%
[binomial] Running Binomial Method... 44.5%
[binomial] Running Binomial Method... 44.6%
[binomial] Running Binomial Method... 44.7%
[binomial] Running Binomial Method... 44.8%
[binomial] Running Binomial Method... 44.9%
[binomial] Running Binomial Method... 45.0%
[binomial] Running Binomial Method... 45.1%
[binomial] Running Binomial Method... 45.2%
[binomial] Running Binomial Method... 45.3%
[binomial] Running Binomial Method... 45.4%
[binomial] Running Binomial Method... 45.5%
[binomial] Running Binomial Method... 45.5%
[binomial] Running Binomial Method... 45.6%
[binomial] Running Binomial Method... 45.7%
[binomial] Running Binomial Method... 45.8%
[binomial] Running Binomial Method... 45.9%
[binomial] Running Binomial Method... 46.0%
[binomial] Running Binomial Method... 46.1%
[binomial] Running Binomial Method... 46.2%
[binomial] Running Binomial Method... 46.3%
[binomial] Running Binomial Method... 46.4%
[binomial] Running Binomial Method... 46.5%
[binomial] Running Binomial Method... 46.5%
[binomial] Running Binomial Method... 46.6%
[binomial] Running Binomial Method... 46.7%
[binomial] Running Binomial Method... 46.8%
[binomial] Running Binomial Method... 46.9%
[binomial] Running Binomial Method... 47.0%
[binomial] Running Binomial Method... 47.1%
[binomial] Running Binomial Method... 47.2%
[binomial] Running Binomial Method... 47.3%
[binomial] Running Binomial Method... 47.4%
[binomial] Running Binomial Method... 47.5%
[binomial] Running Binomial Method... 47.5%
[binomial] Running Binomial Method... 47.6%
[binomial] Running Binomial Method... 47.7%
[binomial] Running Binomial Method... 47.8%
[binomial] Running Binomial Method... 47.9%
[binomial] Running Binomial Method... 48.0%
[binomial] Running Binomial Method... 48.1%
[binomial] Running Binomial Method... 48.2%
[binomial] Running Binomial Method... 48.3%
[binomial] Running Binomial Method... 48.4%
[binomial] Running Binomial Method... 48.5%
[binomial] Running Binomial Method... 48.5%
[binomial] Running Binomial Method... 48.6%
[binomial] Running Binomial Method... 48.7%
[binomial] Running Binomial Method... 48.8%
[binomial] Running Binomial Method... 48.9%
[binomial] Running Binomial Method... 49.0%
[binomial] Running Binomial Method... 49.1%
[binomial] Running Binomial Method... 49.2%
[binomial] Running Binomial Method... 49.3%
[binomial] Running Binomial Method... 49.4%
[binomial] Running Binomial Method... 49.5%
[binomial] Running Binomial Method... 49.5%
[binomial] Running Binomial Method... 49.6%
[binomial] Running Binomial Method... 49.7%
[binomial] Running Binomial Method... 49.8%
[binomial] Running Binomial Method... 49.9%
[binomial] Running Binomial Method... 50.0%
[binomial] Running Binomial Method... 50.1%
[binomial] Running Binomial Method... 50.2%
[binomial] Running Binomial Method... 50.3%
[binomial] Running Binomial Method... 50.4%
[binomial] Running Binomial Method... 50.5%
[binomial] Running Binomial Method... 50.5%
[binomial] Running Binomial Method... 50.6%
[binomial] Running Binomial Method... 50.7%
[binomial] Running Binomial Method... 50.8%
[binomial] Running Binomial Method... 50.9%
[binomial] Running Binomial Method... 51.0%
[binomial] Running Binomial Method... 51.1%
[binomial] Running Binomial Method... 51.2%
[binomial] Running Binomial Method... 51.3%
[binomial] Running Binomial Method... 51.4%
[binomial] Running Binomial Method... 51.5%
[binomial] Running Binomial Method... 51.5%
[binomial] Running Binomial Method... 51.6%
[binomial] Running Binomial Method... 51.7%
[binomial] Running Binomial Method... 51.8%
[binomial] Running Binomial Method... 51.9%
[binomial] Running Binomial Method... 52.0%
[binomial] Running Binomial Method... 52.1%
[binomial] Running Binomial Method... 52.2%
[binomial] Running Binomial Method... 52.3%
[binomial] Running Binomial Method... 52.4%
[binomial] Running Binomial Method... 52.5%
[binomial] Running Binomial Method... 52.5%
[binomial] Running Binomial Method... 52.6%
[binomial] Running Binomial Method... 52.7%
[binomial] Running Binomial Method... 52.8%
[binomial] Running Binomial Method... 52.9%
[binomial] Running Binomial Method... 53.0%
[binomial] Running Binomial Method... 53.1%
[binomial] Running Binomial Method... 53.2%
[binomial] Running Binomial Method... 53.3%
[binomial] Running Binomial Method... 53.4%
[binomial] Running Binomial Method... 53.5%
[binomial] Running Binomial Method... 53.5%
[binomial] Running Binomial Method... 53.6%
[binomial] Running Binomial Method... 53.7%
[binomial] Running Binomial Method... 53.8%
[binomial] Running Binomial Method... 53.9%
[binomial] Running Binomial Method... 54.0%
[binomial] Running Binomial Method... 54.1%
[binomial] Running Binomial Method... 54.2%
[binomial] Running Binomial Method... 54.3%
[binomial] Running Binomial Method... 54.4%
[binomial] Running Binomial Method... 54.5%
[binomial] Running Binomial Method... 54.5%
[binomial] Running Binomial Method... 54.6%
[binomial] Running Binomial Method... 54.7%
[binomial] Running Binomial Method... 54.8%
[binomial] Running Binomial Method... 54.9%
[binomial] Running Binomial Method... 55.0%
[binomial] Running Binomial Method... 55.1%
[binomial] Running Binomial Method... 55.2%
[binomial] Running Binomial Method... 55.3%
[binomial] Running Binomial Method... 55.4%
[binomial] Running Binomial Method... 55.5%
[binomial] Running Binomial Method... 55.5%
[binomial] Running Binomial Method... 55.6%
[binomial] Running Binomial Method... 55.7%
[binomial] Running Binomial Method... 55.8%
[binomial] Running Binomial Method... 55.9%
[binomial] Running Binomial Method... 56.0%
[binomial] Running Binomial Method... 56.1%
[binomial] Running Binomial Method... 56.2%
[binomial] Running Binomial Method... 56.3%
[binomial] Running Binomial Method... 56.4%
[binomial] Running Binomial Method... 56.5%
[binomial] Running Binomial Method... 56.5%
[binomial] Running Binomial Method... 56.6%
[binomial] Running Binomial Method... 56.7%
[binomial] Running Binomial Method... 56.8%
[binomial] Running Binomial Method... 56.9%
[binomial] Running Binomial Method... 57.0%
[binomial] Running Binomial Method... 57.1%
[binomial] Running Binomial Method... 57.2%
[binomial] Running Binomial Method... 57.3%
[binomial] Running Binomial Method... 57.4%
[binomial] Running Binomial Method... 57.5%
[binomial] Running Binomial Method... 57.5%
[binomial] Running Binomial Method... 57.6%
[binomial] Running Binomial Method... 57.7%
[binomial] Running Binomial Method... 57.8%
[binomial] Running Binomial Method... 57.9%
[binomial] Running Binomial Method... 58.0%
[binomial] Running Binomial Method... 58.1%
[binomial] Running Binomial Method... 58.2%
[binomial] Running Binomial Method... 58.3%
[binomial] Running Binomial Method... 58.4%
[binomial] Running Binomial Method... 58.5%
[binomial] Running Binomial Method... 58.5%
[binomial] Running Binomial Method... 58.6%
[binomial] Running Binomial Method... 58.7%
[binomial] Running Binomial Method... 58.8%
[binomial] Running Binomial Method... 58.9%
[binomial] Running Binomial Method... 59.0%
[binomial] Running Binomial Method... 59.1%
[binomial] Running Binomial Method... 59.2%
[binomial] Running Binomial Method... 59.3%
[binomial] Running Binomial Method... 59.4%
[binomial] Running Binomial Method... 59.5%
[binomial] Running Binomial Method... 59.5%
[binomial] Running Binomial Method... 59.6%
[binomial] Running Binomial Method... 59.7%
[binomial] Running Binomial Method... 59.8%
[binomial] Running Binomial Method... 59.9%
[binomial] Running Binomial Method... 60.0%
[binomial] Running Binomial Method... 60.1%
[binomial] Running Binomial Method... 60.2%
[binomial] Running Binomial Method... 60.3%
[binomial] Running Binomial Method... 60.4%
[binomial] Running Binomial Method... 60.5%
[binomial] Running Binomial Method... 60.5%
[binomial] Running Binomial Method... 60.6%
[binomial] Running Binomial Method... 60.7%
[binomial] Running Binomial Method... 60.8%
[binomial] Running Binomial Method... 60.9%
[binomial] Running Binomial Method... 61.0%
[binomial] Running Binomial Method... 61.1%
[binomial] Running Binomial Method... 61.2%
[binomial] Running Binomial Method... 61.3%
[binomial] Running Binomial Method... 61.4%
[binomial] Running Binomial Method... 61.5%
[binomial] Running Binomial Method... 61.5%
[binomial] Running Binomial Method... 61.6%
[binomial] Running Binomial Method... 61.7%
[binomial] Running Binomial Method... 61.8%
[binomial] Running Binomial Method... 61.9%
[binomial] Running Binomial Method... 62.0%
[binomial] Running Binomial Method... 62.1%
[binomial] Running Binomial Method... 62.2%
[binomial] Running Binomial Method... 62.3%
[binomial] Running Binomial Method... 62.4%
[binomial] Running Binomial Method... 62.5%
[binomial] Running Binomial Method... 62.5%
[binomial] Running Binomial Method... 62.6%
[binomial] Running Binomial Method... 62.7%
[binomial] Running Binomial Method... 62.8%
[binomial] Running Binomial Method... 62.9%
[binomial] Running Binomial Method... 63.0%
[binomial] Running Binomial Method... 63.1%
[binomial] Running Binomial Method... 63.2%
[binomial] Running Binomial Method... 63.3%
[binomial] Running Binomial Method... 63.4%
[binomial] Running Binomial Method... 63.5%
[binomial] Running Binomial Method... 63.5%
[binomial] Running Binomial Method... 63.6%
[binomial] Running Binomial Method... 63.7%
[binomial] Running Binomial Method... 63.8%
[binomial] Running Binomial Method... 63.9%
[binomial] Running Binomial Method... 64.0%
[binomial] Running Binomial Method... 64.1%
[binomial] Running Binomial Method... 64.2%
[binomial] Running Binomial Method... 64.3%
[binomial] Running Binomial Method... 64.4%
[binomial] Running Binomial Method... 64.5%
[binomial] Running Binomial Method... 64.5%
[binomial] Running Binomial Method... 64.6%
[binomial] Running Binomial Method... 64.7%
[binomial] Running Binomial Method... 64.8%
[binomial] Running Binomial Method... 64.9%
[binomial] Running Binomial Method... 65.0%
[binomial] Running Binomial Method... 65.1%
[binomial] Running Binomial Method... 65.2%
[binomial] Running Binomial Method... 65.3%
[binomial] Running Binomial Method... 65.4%
[binomial] Running Binomial Method... 65.5%
[binomial] Running Binomial Method... 65.5%
[binomial] Running Binomial Method... 65.6%
[binomial] Running Binomial Method... 65.7%
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ok
test_GI (tests.test_analysis_methods.TestMethods.test_GI) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
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ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
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ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[binomial]
[binomial] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[binomial] Finished Binomial Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_GI
####################
[gi] Starting Genetic Interactions Method
[gi] Getting Data
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/usr/lib/python3.11/unittest/case.py:579: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='w' encoding='UTF-8'>
if method() is not None:
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_Griffin (tests.test_analysis_methods.TestMethods.test_Griffin) ... [gi] analyzing Rv3586 (100.0% done)
[gi] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[gi] Finished Genetic Interactions Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_Griffin
####################
[griffin] Starting Griffin Method
[griffin] Getting Data
[griffin] Running Griffin Method... 2.0%
[griffin] Running Griffin Method... 3.9%
[griffin] Running Griffin Method... 5.9%
[griffin] Running Griffin Method... 7.8%
[griffin] Running Griffin Method... 9.8%
[griffin] Running Griffin Method... 11.8%
[griffin] Running Griffin Method... 13.7%
[griffin] Running Griffin Method... 15.7%
[griffin] Running Griffin Method... 17.6%
[griffin] Running Griffin Method... 19.6%
[griffin] Running Griffin Method... 21.6%
[griffin] Running Griffin Method... 23.5%
[griffin] Running Griffin Method... 25.5%
[griffin] Running Griffin Method... 27.5%
[griffin] Running Griffin Method... 29.4%
[griffin] Running Griffin Method... 31.4%
[griffin] Running Griffin Method... 33.3%
[griffin] Running Griffin Method... 35.3%
[griffin] Running Griffin Method... 37.3%
[griffin] Running Griffin Method... 39.2%
[griffin] Running Griffin Method... 41.2%
[griffin] Running Griffin Method... 43.1%
[griffin] Running Griffin Method... 45.1%
[griffin] Running Griffin Method... 47.1%
[griffin] Running Griffin Method... 49.0%
[griffin] Running Griffin Method... 51.0%
[griffin] Running Griffin Method... 52.9%
[griffin] Running Griffin Method... 54.9%
[griffin] Running Griffin Method... 56.9%
[griffin] Running Griffin Method... 58.8%
[griffin] Running Griffin Method... 60.8%
[griffin] Running Griffin Method... 62.7%
[griffin] Running Griffin Method... 64.7%
[griffin] Running Griffin Method... 66.7%
[griffin] Running Griffin Method... 68.6%
[griffin] Running Griffin Method... 70.6%
[griffin] Running Griffin Method... 72.5%
[griffin] Running Griffin Method... 74.5%
[griffin] Running Griffin Method... 76.5%
[griffin] Running Griffin Method... 78.4%
[griffin] Running Griffin Method... 80.4%
[griffin] Running Griffin Method... 82.4%
[griffin] Running Griffin Method... 84.3%
[griffin] Running Griffin Method... 86.3%
[griffin] Running Griffin Method... 88.2%
[griffin] Running Griffin Method... 90.2%
[griffin] Running Griffin Method... 92.2%
[griffin] Running Griffin Method... 94.1%
[griffin] Running Griffin Method... 96.1%
[griffin] Running Griffin Method... 98.0%
[griffin] Running Griffin Method... 100.0%
ok
test_Gumbel (tests.test_analysis_methods.TestMethods.test_Gumbel) ... [griffin]
[griffin] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[griffin] Finished Griffin Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_Gumbel
####################
[gumbel] Reading Annotation
[gumbel] Getting Data
[gumbel] Doing Regression
[gumbel] Setting Initial Class
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 1.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 2.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 3.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 4.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 5.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 6.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.1%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.3%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.7%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.0%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.4%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.5%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.1%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.3%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.5%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.0%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.4%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 100.0%
ok
test_HMM (tests.test_analysis_methods.TestMethods.test_HMM) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/analysis/hmm.py:194: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
T = len([1 for line in open(ctrldata[0]).readlines() if not line.startswith("#")])
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
for line in open(path):
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/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[gumbel]
[gumbel] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[gumbel] Finished Gumbel Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_HMM
####################
[hmm] Starting HMM Method
[hmm] Getting Data
[hmm] Normalizing using: TTR
[hmm] Running HMM Method... 2.5%
[hmm] Running HMM Method... 5.0%
[hmm] Running HMM Method... 7.5%
[hmm] Running HMM Method... 10.0%
[hmm] Running HMM Method... 12.5%
[hmm] Running HMM Method... 15.0%
[hmm] Running HMM Method... 17.5%
[hmm] Running HMM Method... 20.0%
[hmm] Running HMM Method... 22.5%
[hmm] Running HMM Method... 25.0%
[hmm] Running HMM Method... 27.5%
[hmm] Running HMM Method... 30.0%
[hmm] Running HMM Method... 32.5%
[hmm] Running HMM Method... 35.0%
[hmm] Running HMM Method... 37.5%
[hmm] Running HMM Method... 40.0%
[hmm] Running HMM Method... 42.5%
[hmm] Running HMM Method... 45.0%
[hmm] Running HMM Method... 47.5%
[hmm] Running HMM Method... 50.0%
[hmm] Running HMM Method... 50.0%
[hmm] Running HMM Method... 52.5%
[hmm] Running HMM Method... 55.0%
[hmm] Running HMM Method... 57.5%
[hmm] Running HMM Method... 60.0%
[hmm] Running HMM Method... 62.5%
[hmm] Running HMM Method... 65.0%
[hmm] Running HMM Method... 67.5%
[hmm] Running HMM Method... 70.0%
[hmm] Running HMM Method... 72.5%
[hmm] Running HMM Method... 75.0%
[hmm] Running HMM Method... 77.5%
[hmm] Running HMM Method... 80.0%
[hmm] Running HMM Method... 82.5%
[hmm] Running HMM Method... 85.0%
[hmm] Running HMM Method... 87.5%
[hmm] Running HMM Method... 90.0%
[hmm] Running HMM Method... 92.5%
[hmm] Running HMM Method... 95.0%
[hmm] Running HMM Method... 97.5%
ok
test_anova (tests.test_analysis_methods.TestMethods.test_anova) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:84: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/samples_metadata_cg.txt' mode='r' encoding='UTF-8'>
for line in open(metadata_file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[hmm]
[hmm] Finished HMM - Sites Method
[hmm] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[hmm] Creating HMM Genes Level Output
[hmm] Adding File: /<<PKGBUILDDIR>>/tests/testoutput_genes.txt
[hmm] Finished HMM Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_anova
####################
[anova] Starting Anova analysis
[anova] Getting Data
[anova] Normalizing using: TTR
[anova] Running Anova
[anova] Running Anova Method... 2.0%
[anova] Running Anova Method... 3.9%
[anova] Running Anova Method... 5.9%
[anova] Running Anova Method... 7.8%
[anova] Running Anova Method... 9.8%
[anova] Running Anova Method... 11.8%
[anova] Running Anova Method... 13.7%
[anova] Running Anova Method... 15.7%
[anova] Running Anova Method... 17.6%
[anova] Running Anova Method... 19.6%
[anova] Running Anova Method... 21.6%
[anova] Running Anova Method... 23.5%
[anova] Running Anova Method... 25.5%
[anova] Running Anova Method... 27.5%
[anova] Running Anova Method... 29.4%
[anova] Running Anova Method... 31.4%
[anova] Running Anova Method... 33.3%
[anova] Running Anova Method... 35.3%
[anova] Running Anova Method... 37.3%
[anova] Running Anova Method... 39.2%
[anova] Running Anova Method... 41.2%
[anova] Running Anova Method... 43.1%
[anova] Running Anova Method... 45.1%
[anova] Running Anova Method... 47.1%
[anova] Running Anova Method... 49.0%
[anova] Running Anova Method... 51.0%
[anova] Running Anova Method... 52.9%
[anova] Running Anova Method... 54.9%
[anova] Running Anova Method... 56.9%
[anova] Running Anova Method... 58.8%
[anova] Running Anova Method... 60.8%
[anova] Running Anova Method... 62.7%
[anova] Running Anova Method... 64.7%
[anova] Running Anova Method... 66.7%
[anova] Running Anova Method... 68.6%
[anova] Running Anova Method... 70.6%
[anova] Running Anova Method... 72.5%
[anova] Running Anova Method... 74.5%
[anova] Running Anova Method... 76.5%
[anova] Running Anova Method... 78.4%
[anova] Running Anova Method... 80.4%
[anova] Running Anova Method... 82.4%
[anova] Running Anova Method... 84.3%
[anova] Running Anova Method... 86.3%
[anova] Running Anova Method... 88.2%
[anova] Running Anova Method... 90.2%
[anova] Running Anova Method... 92.2%
[anova] Running Anova Method... 94.1%
[anova] Running Anova Method... 96.1%
[anova] Running Anova Method... 98.0%
[anova] Running Anova Method... 100.0%
/<<PKGBUILDDIR>>/tests/transit_test.py:89: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling (tests.test_analysis_methods.TestMethods.test_resampling) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1290: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1217: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:521: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[anova] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[anova] Finished Anova analysis
[anova] Time: 4.8s
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Performing LOESS Correction
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Performing LOESS Correction
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
[resampling] Running Resampling Method... 9.8%
[resampling] Running Resampling Method... 11.8%
[resampling] Running Resampling Method... 13.7%
[resampling] Running Resampling Method... 15.7%
[resampling] Running Resampling Method... 17.6%
[resampling] Running Resampling Method... 19.6%
[resampling] Running Resampling Method... 21.6%
[resampling] Running Resampling Method... 23.5%
[resampling] Running Resampling Method... 25.5%
[resampling] Running Resampling Method... 27.5%
[resampling] Running Resampling Method... 29.4%
[resampling] Running Resampling Method... 31.4%
[resampling] Running Resampling Method... 33.3%
[resampling] Running Resampling Method... 35.3%
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/<<PKGBUILDDIR>>/tests/transit_test.py:89: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling_adaptive (tests.test_analysis_methods.TestMethods.test_resampling_adaptive) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 34
[resampling] Time: 215.71s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_adaptive
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
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ok
test_resampling_combined_wig (tests.test_analysis_methods.TestMethods.test_resampling_combined_wig) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:84: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/samples_metadata_cg.txt' mode='r' encoding='UTF-8'>
for line in open(metadata_file):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 35
[resampling] Time: 122.07s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_combined_wig
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
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ok
test_resampling_histogram (tests.test_analysis_methods.TestMethods.test_resampling_histogram) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 34
[resampling] Time: 116.40s
[resampling] Finished resampling Method
38
34
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_histogram
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
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ok
test_resampling_multistrain (tests.test_analysis_methods.TestMethods.test_resampling_multistrain) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 34
[resampling] Time: 175.89s
[resampling] Finished resampling Method
Removing histogram files
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_multistrain
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Multiple annotation files found
[resampling] Mapping ctrl data to /<<PKGBUILDDIR>>/tests/data/test.prot_table, exp data to /<<PKGBUILDDIR>>/tests/data/test.prot_table
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
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[resampling] Running Resampling Method... 100.0%
ok
test_utest (tests.test_analysis_methods.TestMethods.test_utest) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 35
[resampling] Time: 371.51s
[resampling] Finished resampling Method
Removing histogram files
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_utest
####################
[utest] Starting Mann-Whitney U-test Method
[utest] Getting Data
[utest] Normalizing using: TTR
[utest] Running Mann-Whitney U-test Method... 2.0%
[utest] Running Mann-Whitney U-test Method... 3.9%
[utest] Running Mann-Whitney U-test Method... 5.9%
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[utest] Running Mann-Whitney U-test Method... 94.1%
[utest] Running Mann-Whitney U-test Method... 96.1%
[utest] Running Mann-Whitney U-test Method... 98.0%
[utest] Running Mann-Whitney U-test Method... 100.0%
ok
test_zinb (tests.test_analysis_methods.TestMethods.test_zinb) ... skipped 'requires R, rpy2'
test_zinb_covariates (tests.test_analysis_methods.TestMethods.test_zinb_covariates) ... skipped 'requires R, rpy2'
test_zinb_interactions (tests.test_analysis_methods.TestMethods.test_zinb_interactions) ... skipped 'requires R, rpy2'
test_TTR (tests.test_norm_methods.TestNormMethods.test_TTR) ... ok
test_nonorm (tests.test_norm_methods.TestNormMethods.test_nonorm) ... ok
test_resampling_NZMean (tests.test_norm_methods.TestNormMethods.test_resampling_NZMean) ... [utest]
[utest] Performing Benjamini-Hochberg Correction
[utest] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[utest] Finished Mann-Whitney U-test Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_TTR
####################
####################
tests.test_norm_methods.TestNormMethods.test_nonorm
####################
####################
tests.test_norm_methods.TestNormMethods.test_resampling_NZMean
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: nzmean
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: nzmean
[resampling] Running Resampling Method... 2.0%
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[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_resampling_Quantile (tests.test_norm_methods.TestNormMethods.test_resampling_Quantile) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 24.68s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_Quantile
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: quantile
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: quantile
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
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/<<PKGBUILDDIR>>/tests/transit_test.py:75: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling_TTR (tests.test_norm_methods.TestNormMethods.test_resampling_TTR) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 29.47s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_TTR
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
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ok
test_resampling_TotReads (tests.test_norm_methods.TestNormMethods.test_resampling_TotReads) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 24.08s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_TotReads
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: totreads
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: totreads
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
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ok
test_resampling_ZINFNB (tests.test_norm_methods.TestNormMethods.test_resampling_ZINFNB) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 23.84s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_ZINFNB
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: zinfnb
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: zinfnb
[resampling] Running Resampling Method... 2.0%
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ok
test_resampling_nonorm (tests.test_norm_methods.TestNormMethods.test_resampling_nonorm) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 65.20s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_nonorm
####################
[resampling] site_restricted=False
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Preprocessing Exp data...
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
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[resampling] Running Resampling Method... 100.0%
ok
test_cleanargs_flag_arguments_w_quotes (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_w_quotes) ... ok
test_cleanargs_flag_arguments_with_double_dash (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_with_double_dash) ... ok
test_cleanargs_flag_without_arguments (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_without_arguments) ... ok
test_cleanargs_negative_arguments (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_negative_arguments) ... ok
test_cleanargs_positional_arguments (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments) ... ok
test_cleanargs_positional_arguments_w_quotes (tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments_w_quotes) ... ok
test_file_types (tests.test_pytransit_tools.TestTnSeqTools.test_file_types) ... ok
test_genes_creation_fromdata (tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromdata) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1290: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1217: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:521: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_genes_creation_fromwig (tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromwig) ... ok
test_normalization (tests.test_pytransit_tools.TestTnSeqTools.test_normalization) ... ok
test_read_data (tests.test_pytransit_tools.TestTnSeqTools.test_read_data) ... ok
test_tpp_flag_primer (tests.test_tpp.TestTPP.test_tpp_flag_primer) ... skipped 'requires local data file'
test_tpp_multicontig_auto_replicon_ids (tests.test_tpp.TestTPP.test_tpp_multicontig_auto_replicon_ids) ... [tn_preprocess] running pre-processing on /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq and
[tn_preprocess] protocol: Sassetti
[tn_preprocess] transposon type: Himar1
[tn_preprocess] One reference genome specified: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna, containing 3 records.
[tn_preprocess] Autogenerating replicon_ids...
[tn_preprocess] extracting reads...
[tn_preprocess] fastq2reads: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq -> /<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:85: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq' mode='r' encoding='UTF-8'>
for line in open(infile):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] assuming single-ended reads
[tn_preprocess] creating /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1
[tn_preprocess] prefix sequence:
[tn_preprocess] Looking for start of Tn prefix within P,Q = [0,20]
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:285: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'>
for line in open(infile):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] mapping reads using BWA...(this takes a couple of minutes)
[tn_preprocess] /usr/bin/bwa index /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
b'[bwa_index] Pack FASTA... 0.46 sec'
b'[bwa_index] Construct BWT for the packed sequence...'
b'[bwa_index] 17.52 seconds elapse.'
b'[bwa_index] Update BWT... 0.40 sec'
b'[bwa_index] Pack forward-only FASTA... 0.32 sec'
b'[bwa_index] Construct SA from BWT and Occ... 13.71 sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa index /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna'
b'[main] Real time: 34.516 sec; CPU: 32.430 sec'
b''
[tn_preprocess] /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1 > /<<PKGBUILDDIR>>/tests/test_tpp_temp.sam
b'[M::bwa_idx_load_from_disk] read 0 ALT contigs'
b'[M::process] read 2500 sequences (304052 bp)...'
b'[M::mem_process_seqs] Processed 2500 reads in 2.025 CPU sec, 2.024 real sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1'
b'[main] Real time: 2.214 sec; CPU: 2.105 sec'
b''
[tn_preprocess] tabulating template counts and statistics for reference genome /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:387: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test-multicontig.fna' mode='r' encoding='UTF-8'>
for line in open(filename):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:569: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.sam' mode='r' encoding='UTF-8'>
for line in open(sam):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_1.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_2.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_3.wig
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1118: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'>
read_length = get_read_length(vars.base + ".reads1")
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1119: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1' mode='r' encoding='UTF-8'>
mean_r1_genomic = get_genomic_portion(vars.base + ".trimmed1")
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1197: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1' mode='r' encoding='UTF-8'>
for line in open(vars.trimmed1):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp.tn_stats
[tn_preprocess] Done.
ok
test_tpp_multicontig_empty_prefix (tests.test_tpp.TestTPP.test_tpp_multicontig_empty_prefix) ... [tn_preprocess] running pre-processing on /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq and
[tn_preprocess] protocol: Sassetti
[tn_preprocess] transposon type: Himar1
[tn_preprocess] One reference genome specified: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna, containing 3 records.
[tn_preprocess] extracting reads...
[tn_preprocess] fastq2reads: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq -> /<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1
[tn_preprocess] assuming single-ended reads
[tn_preprocess] creating /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1
[tn_preprocess] prefix sequence:
[tn_preprocess] Looking for start of Tn prefix within P,Q = [0,20]
[tn_preprocess] mapping reads using BWA...(this takes a couple of minutes)
[tn_preprocess] /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1 > /<<PKGBUILDDIR>>/tests/test_tpp_temp.sam
b'[M::bwa_idx_load_from_disk] read 0 ALT contigs'
b'[M::process] read 2500 sequences (304052 bp)...'
b'[M::mem_process_seqs] Processed 2500 reads in 2.245 CPU sec, 2.317 real sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1'
b'[main] Real time: 2.866 sec; CPU: 2.325 sec'
b''
[tn_preprocess] tabulating template counts and statistics for reference genome /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_a.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_b.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_c.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp.tn_stats
[tn_preprocess] Done.
ok
test_tpp_noflag_primer (tests.test_tpp.TestTPP.test_tpp_noflag_primer) ... skipped 'requires local data file'
test_tpp_protocol_mme1 (tests.test_tpp.TestTPP.test_tpp_protocol_mme1) ... skipped 'requires local data file'
----------------------------------------------------------------------
Ran 39 tests in 1832.933s
OK (skipped=6)
[resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Number of significant conditionally essential genes (Padj<0.05): 0
[resampling] Time: 21.89s
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_w_quotes
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_with_double_dash
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_without_arguments
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_negative_arguments
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments_w_quotes
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_file_types
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromdata
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromwig
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_normalization
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_read_data
####################
####################
tests.test_tpp.TestTPP.test_tpp_multicontig_auto_replicon_ids
####################
/<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# title: Tn-Seq Pre-Processor
# date: 09/15/2023 21:34:44
# command: python python3.11 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py
# transposon type: Himar1
# protocol type: Sassetti
# bwa flags:
# read1: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# read2:
# ref_genome: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
# replicon_ids: 1,2,3
# total_reads (or read pairs): 2500
# truncated_reads 156 (genomic inserts shorter than the read length; ADAP2 appears in read1)
# trimmed_reads (reads with valid Tn prefix, and insert size>20bp): 2512
# reads1_mapped: 2116
# reads2_mapped: 0
# mapped_reads (both R1 and R2 map into genome, and R2 has a proper barcode): 2116
# read_count (TA sites only, for Himar1):
# 1: 63
# 2: 0
# 3: 0
# template_count:
# 1: 63
# 2: 0
# 3: 0
# template_ratio (reads per template):
# 1: 1.00
# 2: 0.00
# 3: 0.00
# TA_sites:
# 1: 89994
# 2: 646
# 3: 664
# TAs_hit:
# 1: 63
# 2: 0
# 3: 0
# density:
# 1: 0.001
# 2: 0.000
# 3: 0.000
# max_count (among templates):
# 1: 1
# 2: 0
# 3: 0
# max_site (coordinate):
# 1: 4977050
# 2: 57441
# 3: 38111
# NZ_mean (among templates):
# 1: 1.0
# 2: 0.0
# 3: 0.0
# FR_corr (Fwd templates vs. Rev templates):
# 1: -0.000
# 2: nan
# 3: nan
# BC_corr (reads vs. templates, summed over both strands):
# 1: nan
# 2: nan
# 3: nan
# Break-down of total reads (2500):
# -12 reads (-0.5%) lack the expected Tn prefix
# Break-down of trimmed reads with valid Tn prefix (2500):
# primer_matches: 36 reads (1.4%) contain CTAGAGGGCCCAATTCGCCCTATAGTGAGT (Himar1)
# vector_matches: 36 reads (1.4%) contain CTAGACCGTCCAGTCTGGCAGGCCGGAAAC (phiMycoMarT7)
# adapter_matches: 14 reads (0.6%) contain GATCGGAAGAGCACACGTCTGAACTCCAGTCAC (Illumina/TruSeq index)
# misprimed_reads: 17 reads (0.7%) contain Himar1 prefix but don't end in TGTTA
# read_length: 125 bp
# mean_R1_genomic_length: 121.6 bp
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
####################
tests.test_tpp.TestTPP.test_tpp_multicontig_empty_prefix
####################
/<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# title: Tn-Seq Pre-Processor
# date: 09/15/2023 21:35:01
# command: python python3.11 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py
# transposon type: Himar1
# protocol type: Sassetti
# bwa flags:
# read1: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# read2:
# ref_genome: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
# replicon_ids: a,b,c
# total_reads (or read pairs): 2500
# truncated_reads 156 (genomic inserts shorter than the read length; ADAP2 appears in read1)
# trimmed_reads (reads with valid Tn prefix, and insert size>20bp): 2512
# reads1_mapped: 2116
# reads2_mapped: 0
# mapped_reads (both R1 and R2 map into genome, and R2 has a proper barcode): 2116
# read_count (TA sites only, for Himar1):
# a: 63
# b: 0
# c: 0
# template_count:
# a: 63
# b: 0
# c: 0
# template_ratio (reads per template):
# a: 1.00
# b: 0.00
# c: 0.00
# TA_sites:
# a: 89994
# b: 646
# c: 664
# TAs_hit:
# a: 63
# b: 0
# c: 0
# density:
# a: 0.001
# b: 0.000
# c: 0.000
# max_count (among templates):
# a: 1
# b: 0
# c: 0
# max_site (coordinate):
# a: 4977050
# b: 57441
# c: 38111
# NZ_mean (among templates):
# a: 1.0
# b: 0.0
# c: 0.0
# FR_corr (Fwd templates vs. Rev templates):
# a: -0.000
# b: nan
# c: nan
# BC_corr (reads vs. templates, summed over both strands):
# a: nan
# b: nan
# c: nan
# Break-down of total reads (2500):
# -12 reads (-0.5%) lack the expected Tn prefix
# Break-down of trimmed reads with valid Tn prefix (2500):
# primer_matches: 36 reads (1.4%) contain CTAGAGGGCCCAATTCGCCCTATAGTGAGT (Himar1)
# vector_matches: 36 reads (1.4%) contain CTAGACCGTCCAGTCTGGCAGGCCGGAAAC (phiMycoMarT7)
# adapter_matches: 14 reads (0.6%) contain GATCGGAAGAGCACACGTCTGAACTCCAGTCAC (Illumina/TruSeq index)
# misprimed_reads: 17 reads (0.7%) contain Himar1 prefix but don't end in TGTTA
# read_length: 125 bp
# mean_R1_genomic_length: 121.6 bp
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/tnseq-transit/ -a -O--buildsystem=pybuild
I: pybuild base:291: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/tnseq-transit
/usr/lib/python3/dist-packages/setuptools/dist.py:744: SetuptoolsDeprecationWarning: Invalid dash-separated options
!!
********************************************************************************
Usage of dash-separated 'description-file' will not be supported in future
versions. Please use the underscore name 'description_file' instead.
By 2023-Sep-26, you need to update your project and remove deprecated calls
or your builds will no longer be supported.
See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details.
********************************************************************************
!!
opt = self.warn_dash_deprecation(opt, section)
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running build_py
running egg_info
writing tnseq_transit.egg-info/PKG-INFO
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing requirements to tnseq_transit.egg-info/requires.txt
writing top-level names to tnseq_transit.egg-info/top_level.txt
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'VERSION'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
adding license file 'LICENSE.md'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pytransit.data' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'pytransit.data' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'pytransit.data' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'pytransit.data' to be distributed and are
already explicitly excluding 'pytransit.data' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pytransit.data.CGI' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'pytransit.data.CGI' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'pytransit.data.CGI' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'pytransit.data.CGI' to be distributed and are
already explicitly excluding 'pytransit.data.CGI' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
/usr/lib/python3/dist-packages/setuptools/command/build_py.py:204: _Warning: Package 'pytransit.genomes' is absent from the `packages` configuration.
!!
********************************************************************************
############################
# Package would be ignored #
############################
Python recognizes 'pytransit.genomes' as an importable package[^1],
but it is absent from setuptools' `packages` configuration.
This leads to an ambiguous overall configuration. If you want to distribute this
package, please make sure that 'pytransit.genomes' is explicitly added
to the `packages` configuration field.
Alternatively, you can also rely on setuptools' discovery methods
(for example by using `find_namespace_packages(...)`/`find_namespace:`
instead of `find_packages(...)`/`find:`).
You can read more about "package discovery" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/package_discovery.html
If you don't want 'pytransit.genomes' to be distributed and are
already explicitly excluding 'pytransit.genomes' via
`find_namespace_packages(...)/find_namespace` or `find_packages(...)/find`,
you can try to use `exclude_package_data`, or `include-package-data=False` in
combination with a more fine grained `package-data` configuration.
You can read more about "package data files" on setuptools documentation page:
- https://setuptools.pypa.io/en/latest/userguide/datafiles.html
[^1]: For Python, any directory (with suitable naming) can be imported,
even if it does not contain any `.py` files.
On the other hand, currently there is no concept of package data
directory, all directories are treated like packages.
********************************************************************************
!!
check.warn(importable)
running install_lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/images.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/CGI.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/anova.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/corrplot.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/gi.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/heatmap.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/norm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/normalize.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/pathway_enrichment.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/tnseq_stats.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/ttnfitness.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/utest.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/analysis/zinb.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/convert/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/convert/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/convert/gff_to_prot_table.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export/combined_wig.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export/igv.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export/mean_counts.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/export/prot_table.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/COG_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/GO_associated_Rvs.csv -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/GO_term_names.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/H37Rv_COG_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/H37Rv_GO_terms.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/H37Rv_sanger_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/README.md -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/cholesterol_glycerol_combined.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/gene_ontology.1_2.3-11-18.obo -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/samples_metadata_cg.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/samples_metadata_cg_covar.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/samples_metadata_cg_interactions.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/sanger_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/smeg_COG_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/smeg_GO_terms.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data/CGI
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI/IDs.H37Rv.CRISPRi.lib.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data/CGI
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI/counts_metadata.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data/CGI
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI/sgRNA_metadata.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data/CGI
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/data/CGI/uninduced_ATC_counts.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/data/CGI
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11/build/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/genomes
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/__main__.py to __main__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/tpp_gui.py to tpp_gui.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytpp/tpp_tools.py to tpp_tools.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/__main__.py to __main__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/draw_trash.py to draw_trash.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/fileDisplay.py to fileDisplay.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/images.py to images.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/norm_tools.py to norm_tools.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/qcDisplay.py to qcDisplay.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/stat_tools.py to stat_tools.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/tnseq_tools.py to tnseq_tools.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/transit_gui.py to transit_gui.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/transit_tools.py to transit_tools.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/trash.py to trash.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/view_trash.py to view_trash.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/CGI.py to CGI.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/anova.py to anova.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/base.py to base.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/binomial.py to binomial.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/corrplot.py to corrplot.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/example.py to example.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/gi.py to gi.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/griffin.py to griffin.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/gumbel.py to gumbel.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/heatmap.py to heatmap.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/hmm.py to hmm.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/norm.py to norm.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/normalize.py to normalize.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/pathway_enrichment.py to pathway_enrichment.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/rankproduct.py to rankproduct.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/resampling.py to resampling.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/tn5gaps.py to tn5gaps.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/tnseq_stats.py to tnseq_stats.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/ttnfitness.py to ttnfitness.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/utest.py to utest.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/analysis/zinb.py to zinb.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert/base.py to base.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/convert/gff_to_prot_table.py to gff_to_prot_table.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/base.py to base.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/combined_wig.py to combined_wig.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/igv.py to igv.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/mean_counts.py to mean_counts.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/pytransit/export/prot_table.py to prot_table.cpython-311.pyc
running install_egg_info
Copying tnseq_transit.egg-info to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.11/dist-packages/tnseq_transit-3.3.0.egg-info
Skipping SOURCES.txt
running install_scripts
Installing tpp script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
Installing transit script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mv debian/tnseq-transit/usr/bin/tpp debian/tnseq-transit/usr/bin/transit-tpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
dh_installsystemduser -a -O--buildsystem=pybuild
dh_perl -a -O--buildsystem=pybuild
dh_link -a -O--buildsystem=pybuild
dh_strip_nondeterminism -a -O--buildsystem=pybuild
dh_compress -a -O--buildsystem=pybuild
dh_fixperms -a -O--buildsystem=pybuild
dh_missing -a -O--buildsystem=pybuild
dh_dwz -a -O--buildsystem=pybuild
dh_strip -a -O--buildsystem=pybuild
dh_makeshlibs -a -O--buildsystem=pybuild
dh_shlibdeps -a -O--buildsystem=pybuild
dh_installdeb -a -O--buildsystem=pybuild
dh_gencontrol -a -O--buildsystem=pybuild
dh_md5sums -a -O--buildsystem=pybuild
dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'tnseq-transit' in '../tnseq-transit_3.3.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../tnseq-transit_3.3.0-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../tnseq-transit_3.3.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-09-15T21:40:00Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
tnseq-transit_3.3.0-1_armhf.changes:
------------------------------------
Format: 1.8
Date: Sun, 13 Aug 2023 11:03:02 +0200
Source: tnseq-transit
Binary: tnseq-transit
Architecture: armhf
Version: 3.3.0-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Étienne Mollier <emollier@debian.org>
Description:
tnseq-transit - statistical calculations of essentiality of genes or genomic regi
Changes:
tnseq-transit (3.3.0-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
Checksums-Sha1:
43919fb4707933bfe9026fe14563cf553c8a4c15 8433 tnseq-transit_3.3.0-1_armhf.buildinfo
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54436aeb37fbb15be8054a319fa12769 8433 science optional tnseq-transit_3.3.0-1_armhf.buildinfo
5ebef4e962fca7f29f802060eda2fd53 17935712 science optional tnseq-transit_3.3.0-1_armhf.deb
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tnseq-transit_3.3.0-1_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 17935712 bytes: control archive=4112 bytes.
1401 bytes, 28 lines control
9655 bytes, 102 lines md5sums
273 bytes, 12 lines * postinst #!/bin/sh
386 bytes, 12 lines * prerm #!/bin/sh
Package: tnseq-transit
Version: 3.3.0-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 114750
Depends: python3-matplotlib, python3-numpy, python3-pil, python3-pkg-resources, python3-pubsub, python3-scipy, python3-sklearn, python3-statsmodels, python3-wxgtk4.0, python3:any, bwa
Breaks: transit
Replaces: transit
Provides: transit
Section: science
Priority: optional
Homepage: http://saclab.tamu.edu/essentiality/transit/
Description: statistical calculations of essentiality of genes or genomic regions
This is a software that can be used to analyze Tn-Seq datasets. It
includes various statistical calculations of essentiality of genes or
genomic regions (including conditional essentiality between 2
conditions). These methods were developed and tested as a collaboration
between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)
.
TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1
or Tn5 datasets.
.
TRANSIT assumes you have already done pre-processing of raw sequencing
files (.fastq) and extracted read counts into a .wig formatted file.
The .wig file should contain the counts at all sites where an insertion
could take place (including sites with no reads). For Himar1 datasets
this is all TA sites in the genome. For Tn5 datasets this would be all
nucleotides in the genome.
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 397140
Build-Time: 2201
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 1662
Job: tnseq-transit_3.3.0-1
Machine Architecture: armhf
Package: tnseq-transit
Package-Time: 3938
Source-Version: 3.3.0-1
Space: 397140
Status: successful
Version: 3.3.0-1
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Finished at 2023-09-15T21:40:00Z
Build needed 01:05:38, 397140k disc space