tnseq-transit →
3.2.3-2 →
armhf → 2022-03-03 10:59:07
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| tnseq-transit 3.2.3-2 (armhf) Thu, 03 Mar 2022 10:33:58 +0000 |
+==============================================================================+
Package: tnseq-transit
Version: 3.2.3-2
Source Version: 3.2.3-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-c8858045-0a39-43d6-b27e-b1f84948c9e4' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.9 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.7 MB]
Fetched 26.6 MB in 9s (2856 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'tnseq-transit' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/tnseq-transit.git
Please use:
git clone https://salsa.debian.org/med-team/tnseq-transit.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 26.9 MB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main tnseq-transit 3.2.3-2 (dsc) [2224 B]
Get:2 http://172.17.4.1/private bookworm-staging/main tnseq-transit 3.2.3-2 (tar) [26.9 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main tnseq-transit 3.2.3-2 (diff) [6328 B]
Fetched 26.9 MB in 3s (9522 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tnseq-transit-csVyKS/tnseq-transit-3.2.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tnseq-transit-csVyKS' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-VajvCK/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-VajvCK/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-VajvCK/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (10.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libperl5.32 netbase perl-modules-5.32 sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 21 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (67.5 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14451 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-statsmodels, python3-pubsub, bwa, debhelper
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-statsmodels, python3-pubsub, bwa, debhelper
dpkg-deb: building package 'sbuild-build-depends-tnseq-transit-dummy' in '/<<BUILDDIR>>/resolver-VajvCK/apt_archive/sbuild-build-depends-tnseq-transit-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-tnseq-transit-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ Sources [561 B]
Get:5 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ Packages [643 B]
Fetched 2537 B in 0s (12.1 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install tnseq-transit build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libperl5.32 netbase perl-modules-5.32
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils bwa debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core fonts-lyx gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbrotli1 libbsd0 libdebhelper-perl
libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libmagic-mgc libmagic1
libmd0 libmpdec3 libopenjp2-7 libpipeline1 libpng16-16 libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libqhull-r8.0 libraqm0 libsigsegv2 libsub-override-perl
libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxrender1 libxslt1.1 libxss1 m4 mailcap man-db media-types
mime-support po-debconf python-matplotlib-data python3 python3-appdirs
python3-attr python3-brotli python3-cycler python3-dateutil
python3-decorator python3-dev python3-distutils python3-fonttools python3-fs
python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-patsy
python3-pil python3-pil.imagetk python3-pkg-resources python3-pubsub
python3-pyparsing python3-scipy python3-setuptools python3-six
python3-statsmodels python3-statsmodels-lib python3-sympy python3-tk
python3-tz python3-ufolib2 python3.9 python3.9-dev python3.9-minimal
tk8.6-blt2.5 ucf unicode-data x11-common zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc blt-demo samtools dh-make flit
python3-build python3-tomli python3-installer gettext-doc libasprintf-dev
libgettextpo-dev groff libjs-jquery-ui-docs liblcms2-utils tcl8.6 tk8.6
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python3-doc python3-venv python-attr-doc
python-cycler-doc python-lxml-doc dvipng ffmpeg fonts-staypuft ghostscript
gir1.2-gtk-3.0 inkscape ipython3 librsvg2-common python-matplotlib-doc
python3-cairocffi python3-gi python3-gi-cairo python3-gobject python3-pyqt5
python3-sip python3-tornado texlive-extra-utils texlive-latex-extra
python-mpmath-doc python3-gmpy2 gfortran python-numpy-doc python3-pytest
python-pandas-doc python-patsy-doc python-pil-doc python-pyparsing-doc
python-scipy-doc python-setuptools-doc python-statsmodels-doc
texlive-fonts-extra python-sympy-doc tix python3-tk-dbg python3.9-venv
python3.9-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs javascript-common ca-certificates libltdl-dev
libmail-sendmail-perl python3-bs4 python3-html5lib python3-bottleneck
python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-tables
python3-jinja2 python3-olefile python3-joblib python3-colorama
python3-cvxopt
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev blt bsdextrautils bwa debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file fontconfig-config
fonts-dejavu-core fonts-lyx gettext gettext-base groff-base intltool-debian
libarchive-zip-perl libblas3 libbrotli1 libbsd0 libdebhelper-perl
libdeflate0 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libfribidi0 libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libicu67 libimagequant0 libjbig0
libjpeg62-turbo libjs-jquery libjs-jquery-ui libjs-sphinxdoc
libjs-underscore liblapack3 liblbfgsb0 liblcms2-2 libmagic-mgc libmagic1
libmd0 libmpdec3 libopenjp2-7 libpipeline1 libpng16-16 libpython3-dev
libpython3-stdlib libpython3.9 libpython3.9-dev libpython3.9-minimal
libpython3.9-stdlib libqhull-r8.0 libraqm0 libsigsegv2 libsub-override-perl
libtcl8.6 libtiff5 libtk8.6 libtool libuchardet0 libwebp6 libwebpdemux2
libwebpmux3 libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxrender1 libxslt1.1 libxss1 m4 mailcap man-db media-types
mime-support po-debconf python-matplotlib-data python3 python3-appdirs
python3-attr python3-brotli python3-cycler python3-dateutil
python3-decorator python3-dev python3-distutils python3-fonttools python3-fs
python3-kiwisolver python3-lib2to3 python3-lxml python3-lz4
python3-matplotlib python3-minimal python3-mpmath python3-numpy
python3-packaging python3-pandas python3-pandas-lib python3-patsy
python3-pil python3-pil.imagetk python3-pkg-resources python3-pubsub
python3-pyparsing python3-scipy python3-setuptools python3-six
python3-statsmodels python3-statsmodels-lib python3-sympy python3-tk
python3-tz python3-ufolib2 python3.9 python3.9-dev python3.9-minimal
sbuild-build-depends-tnseq-transit-dummy tk8.6-blt2.5 ucf unicode-data
x11-common zlib1g-dev
0 upgraded, 137 newly installed, 0 to remove and 21 not upgraded.
Need to get 94.6 MB of archives.
After this operation, 401 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-VajvCK/apt_archive ./ sbuild-build-depends-tnseq-transit-dummy 0.invalid.0 [928 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.10-1+rpi1 [794 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.4-1 [82.4 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.10-1+rpi1 [1595 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.8-1 [38.5 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf media-types all 5.0.0 [32.5 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf mailcap all 3.70+nmu1 [32.0 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.10-1+rpi1 [1611 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf python3.9 armhf 3.9.10-1+rpi1 [488 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.8-1 [21.6 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf python3 armhf 3.9.8-1 [38.1 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.3-1 [136 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.5-1 [32.9 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.1-1 [1358 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.1+dfsg-1 [334 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.5-1 [108 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf tk8.6-blt2.5 armhf 2.5.3+dfsg-4.1 [477 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf blt armhf 2.5.3+dfsg-4.1 [14.9 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf bwa armhf 0.7.17-6 [195 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.6 [193 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.13+dfsg-1 [593 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.6 [1054 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.10-1 [79.4 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf python3-distutils all 3.9.10-1 [146 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf dh-python all 5.20220215 [112 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-2 [109 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.4-1 [135 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-16+rpi1 [235 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.4-1 [1209 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libimagequant0 armhf 2.17.0-1 [28.0 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.0+dfsg+~3.5.13-1 [316 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.13.1+dfsg-1 [250 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libjs-underscore all 1.13.2~dfsg-2 [116 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.3.2-1 [139 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-10 [24.2 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libopenjp2-7 armhf 2.4.0-6 [150 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.10-1+rpi1 [1419 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.10-1+rpi1 [3015 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.8-1 [21.9 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libqhull-r8.0 armhf 2020.2-4 [221 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libraqm0 armhf 0.7.0-4 [9388 B]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-4 [272 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.8 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.4 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libxslt1.1 armhf 1.1.34-4 [218 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf python-matplotlib-data all 3.5.1-2 [2741 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf python3-appdirs all 1.4.4-2 [12.9 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf python3-attr all 21.2.0-1 [57.5 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf python3-brotli armhf 1.0.9-2+b1 [279 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf python3-cycler all 0.11.0-1 [8020 B]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf python3-six all 1.16.0-3 [17.5 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.10-1+rpi1 [501 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf python3-dev armhf 3.9.8-1 [25.3 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf python3-pkg-resources all 59.6.0-1.2 [196 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.21.5-1 [3437 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf python3-scipy armhf 1.7.3-2 [11.8 MB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf python3-ufolib2 all 0.13.1+dfsg1-1 [32.0 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf python3-mpmath all 1.2.1-2 [418 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf python3-sympy all 1.9-1 [4227 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf python3-tz all 2021.3-1 [34.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf python3-fs all 2.4.12-1 [89.1 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf python3-lxml armhf 4.8.0-1 [1297 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf python3-lz4 armhf 3.1.3+dfsg-1 [29.1 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf unicode-data all 14.0.0-1.1 [7868 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf python3-fonttools armhf 4.29.1-1 [776 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.2-1 [45.8 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf python3-pil armhf 9.0.0-1 [421 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf python3-tk armhf 3.9.10-1 [104 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf python3-pil.imagetk armhf 9.0.0-1 [76.4 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf python3-packaging all 21.3-1 [34.1 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.5.1-2 [6484 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.3.5+dfsg-2 [2971 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf python3-pandas all 1.3.5+dfsg-2 [2654 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf python3-patsy all 0.5.2-2 [173 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf python3-pubsub all 4.0.3-6 [46.7 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf python3-setuptools all 59.6.0-1.2 [401 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf python3-statsmodels-lib armhf 0.13.1+dfsg-5+rpi1 [1105 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf python3-statsmodels all 0.13.1+dfsg-5+rpi1 [4522 kB]
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invoke-rc.d: could not determine current runlevel
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Setting up python3 (3.9.8-1) ...
Setting up man-db (2.10.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3-tz (2021.3-1) ...
Setting up python3-six (1.16.0-3) ...
Setting up dh-autoreconf (20) ...
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Setting up python3-distutils (3.9.10-1) ...
Setting up dh-python (5.20220215) ...
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Setting up python3-setuptools (59.6.0-1.2) ...
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Setting up debhelper (13.6) ...
Setting up python3-fs (2.4.12-1) ...
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Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ...
Setting up python3-scipy (1.7.3-2) ...
Setting up blt (2.5.3+dfsg-4.1) ...
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Setting up python3-pil.imagetk:armhf (9.0.0-1) ...
Setting up python3-statsmodels (0.13.1+dfsg-5+rpi1) ...
Setting up python3-fonttools (4.29.1-1) ...
Setting up python3-ufolib2 (0.13.1+dfsg1-1) ...
Setting up python3-matplotlib (3.5.1-2) ...
Setting up sbuild-build-depends-tnseq-transit-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.37.90.20220207-1+rpi1 dpkg-dev_1.21.1+rpi1 g++-11_11.2.0-16+rpi1 gcc-11_11.2.0-16+rpi1 libc6-dev_2.33-5+rpi1 libstdc++-11-dev_11.2.0-16+rpi1 libstdc++6_11.2.0-16+rpi1 linux-libc-dev_5.15.15-2+rpi1
Package versions: adduser_3.118 apt_2.3.15 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.37.90.20220207-1+rpi1 binutils-arm-linux-gnueabihf_2.37.90.20220207-1+rpi1 binutils-common_2.37.90.20220207-1+rpi1 blt_2.5.3+dfsg-4.1 bsdextrautils_2.37.3-1 bsdutils_1:2.37.3-1 build-essential_12.9 bwa_0.7.17-6 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-16+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debianutils_4.11.2 dh-autoreconf_20 dh-python_5.20220215 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3 dpkg_1.21.1+rpi1 dpkg-dev_1.21.1+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.27-1 file_1:5.41-2 findutils_4.8.0-1 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 fonts-lyx_2.3.6-1 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-16+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-16+rpi1 gcc-11-base_11.2.0-16+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-3 gnupg-l10n_2.2.27-3 gnupg-utils_2.2.27-3 gpg_2.2.27-3 gpg-agent_2.2.27-3 gpg-wks-client_2.2.27-3 gpg-wks-server_2.2.27-3 gpgconf_2.2.27-3 gpgsm_2.2.27-3 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.15 libarchive-zip-perl_1.68-1 libasan6_11.2.0-16+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-16+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1 libbinutils_2.37.90.20220207-1+rpi1 libblas3_3.10.0-2 libblkid1_2.37.3-1 libbrotli1_1.0.9-2+b1 libbsd0_0.11.5-1 libbz2-1.0_1.0.8-5 libc-bin_2.33-5+rpi1 libc-dev-bin_2.33-5+rpi1 libc6_2.33-5+rpi1 libc6-dev_2.33-5+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-16+rpi1 libcom-err2_1.46.5-2 libcrypt-dev_1:4.4.27-1.1 libcrypt1_1:4.4.27-1.1 libctf-nobfd0_2.37.90.20220207-1+rpi1 libctf0_2.37.90.20220207-1+rpi1 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mailcap_3.70+nmu1 make_4.3-4.1 man-db_2.10.1-1 mawk_1.3.4.20200120-3 media-types_5.0.0 mime-support_3.66 mount_2.37.3-1 ncurses-base_6.3-2 ncurses-bin_6.3-2 netbase_6.3 passwd_1:4.11.1+dfsg1-1 patch_2.7.6-7 perl_5.34.0-3 perl-base_5.34.0-3 perl-modules-5.32_5.32.1-6 perl-modules-5.34_5.34.0-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.5.1-2 python3_3.9.8-1 python3-appdirs_1.4.4-2 python3-attr_21.2.0-1 python3-brotli_1.0.9-2+b1 python3-cycler_0.11.0-1 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-2 python3-dev_3.9.8-1 python3-distutils_3.9.10-1 python3-fonttools_4.29.1-1 python3-fs_2.4.12-1 python3-kiwisolver_1.3.2-1 python3-lib2to3_3.9.10-1 python3-lxml_4.8.0-1 python3-lz4_3.1.3+dfsg-1 python3-matplotlib_3.5.1-2 python3-minimal_3.9.8-1 python3-mpmath_1.2.1-2 python3-numpy_1:1.21.5-1 python3-packaging_21.3-1 python3-pandas_1.3.5+dfsg-2 python3-pandas-lib_1.3.5+dfsg-2 python3-patsy_0.5.2-2 python3-pil_9.0.0-1 python3-pil.imagetk_9.0.0-1 python3-pkg-resources_59.6.0-1.2 python3-pubsub_4.0.3-6 python3-pyparsing_2.4.7-1 python3-scipy_1.7.3-2 python3-setuptools_59.6.0-1.2 python3-six_1.16.0-3 python3-statsmodels_0.13.1+dfsg-5+rpi1 python3-statsmodels-lib_0.13.1+dfsg-5+rpi1 python3-sympy_1.9-1 python3-tk_3.9.10-1 python3-tz_2021.3-1 python3-ufolib2_0.13.1+dfsg1-1 python3.9_3.9.10-1+rpi1 python3.9-dev_3.9.10-1+rpi1 python3.9-minimal_3.9.10-1+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tnseq-transit-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tk8.6-blt2.5_2.5.3+dfsg-4.1 tzdata_2021e-1 ucf_3.0043 unicode-data_14.0.0-1.1 util-linux_2.37.3-1 x11-common_1:7.7+23 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.ZN_icujn/trustedkeys.kbx': General error
gpgv: Signature made Tue Jan 18 18:00:05 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./tnseq-transit_3.2.3-2.dsc
dpkg-source: info: extracting tnseq-transit in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tnseq-transit_3.2.3.orig.tar.gz
dpkg-source: info: unpacking tnseq-transit_3.2.3-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip_test_requiring_non_existing_input_data.patch
dpkg-source: info: applying fix_problematic_comparison.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-c8858045-0a39-43d6-b27e-b1f84948c9e4
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package tnseq-transit
dpkg-buildpackage: info: source version 3.2.3-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --with python3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:237: python3.9 setup.py clean
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
rm -rf tests_invalid_data
rm -rf tnseq_transit.egg-info
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p tests_invalid_data
mv tests/H37Rv.fna tests_invalid_data
dh_auto_configure
I: pybuild base:237: python3.9 setup.py config
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
running config
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3 setup.py build
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp
copying src/pytpp/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp
copying src/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp
copying src/pytpp/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp
copying src/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/images.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert
copying src/pytransit/convert/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert
copying src/pytransit/convert/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert
copying src/pytransit/convert/gff_to_prot_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/igv.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/prot_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/combined_wig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/mean_counts.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/norm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/heatmap.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/normalize.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/tnseq_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/anova.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/utest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/corrplot.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/pathway_enrichment.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/zinb.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/gi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
running egg_info
creating tnseq_transit.egg-info
writing tnseq_transit.egg-info/PKG-INFO
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing requirements to tnseq_transit.egg-info/requires.txt
writing top-level names to tnseq_transit.egg-info/top_level.txt
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'VERSION'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
adding license file 'LICENSE.md'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/COG_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/GO_associated_Rvs.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/GO_term_names.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/H37Rv_COG_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/H37Rv_GO_terms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/H37Rv_sanger_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/README.md -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/cholesterol_glycerol_combined.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/gene_ontology.1_2.3-11-18.obo -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg_covar.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg_interactions.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/sanger_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/smeg_GO_terms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test -- --system=custom --test-args="PYTHONPATH=tests {interpreter} -m unittest -v tests/*.py"
I: pybuild base:237: PYTHONPATH=tests python3.9 -m unittest -v tests/*.py
test_Binomial (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1290: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1217: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:521: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
####################
tests.test_analysis_methods.TestMethods.test_Binomial
####################
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[binomial] Running Binomial Method... 32.3%
[binomial] Running Binomial Method... 32.4%
[binomial] Running Binomial Method... 32.5%
[binomial] Running Binomial Method... 32.5%
[binomial] Running Binomial Method... 32.6%
[binomial] Running Binomial Method... 32.7%
[binomial] Running Binomial Method... 32.8%
[binomial] Running Binomial Method... 32.9%
[binomial] Running Binomial Method... 33.0%
[binomial] Running Binomial Method... 33.1%
[binomial] Running Binomial Method... 33.2%
[binomial] Running Binomial Method... 33.3%
[binomial] Running Binomial Method... 33.4%
[binomial] Running Binomial Method... 33.5%
[binomial] Running Binomial Method... 33.5%
[binomial] Running Binomial Method... 33.6%
[binomial] Running Binomial Method... 33.7%
[binomial] Running Binomial Method... 33.8%
[binomial] Running Binomial Method... 33.9%
[binomial] Running Binomial Method... 34.0%
[binomial] Running Binomial Method... 34.1%
[binomial] Running Binomial Method... 34.2%
[binomial] Running Binomial Method... 34.3%
[binomial] Running Binomial Method... 34.4%
[binomial] Running Binomial Method... 34.5%
[binomial] Running Binomial Method... 34.5%
[binomial] Running Binomial Method... 34.6%
[binomial] Running Binomial Method... 34.7%
[binomial] Running Binomial Method... 34.8%
[binomial] Running Binomial Method... 34.9%
[binomial] Running Binomial Method... 35.0%
[binomial] Running Binomial Method... 35.1%
[binomial] Running Binomial Method... 35.2%
[binomial] Running Binomial Method... 35.3%
[binomial] Running Binomial Method... 35.4%
[binomial] Running Binomial Method... 35.5%
[binomial] Running Binomial Method... 35.5%
[binomial] Running Binomial Method... 35.6%
[binomial] Running Binomial Method... 35.7%
[binomial] Running Binomial Method... 35.8%
[binomial] Running Binomial Method... 35.9%
[binomial] Running Binomial Method... 36.0%
[binomial] Running Binomial Method... 36.1%
[binomial] Running Binomial Method... 36.2%
[binomial] Running Binomial Method... 36.3%
[binomial] Running Binomial Method... 36.4%
[binomial] Running Binomial Method... 36.5%
[binomial] Running Binomial Method... 36.5%
[binomial] Running Binomial Method... 36.6%
[binomial] Running Binomial Method... 36.7%
[binomial] Running Binomial Method... 36.8%
[binomial] Running Binomial Method... 36.9%
[binomial] Running Binomial Method... 37.0%
[binomial] Running Binomial Method... 37.1%
[binomial] Running Binomial Method... 37.2%
[binomial] Running Binomial Method... 37.3%
[binomial] Running Binomial Method... 37.4%
[binomial] Running Binomial Method... 37.5%
[binomial] Running Binomial Method... 37.5%
[binomial] Running Binomial Method... 37.6%
[binomial] Running Binomial Method... 37.7%
[binomial] Running Binomial Method... 37.8%
[binomial] Running Binomial Method... 37.9%
[binomial] Running Binomial Method... 38.0%
[binomial] Running Binomial Method... 38.1%
[binomial] Running Binomial Method... 38.2%
[binomial] Running Binomial Method... 38.3%
[binomial] Running Binomial Method... 38.4%
[binomial] Running Binomial Method... 38.5%
[binomial] Running Binomial Method... 38.5%
[binomial] Running Binomial Method... 38.6%
[binomial] Running Binomial Method... 38.7%
[binomial] Running Binomial Method... 38.8%
[binomial] Running Binomial Method... 38.9%
[binomial] Running Binomial Method... 39.0%
[binomial] Running Binomial Method... 39.1%
[binomial] Running Binomial Method... 39.2%
[binomial] Running Binomial Method... 39.3%
[binomial] Running Binomial Method... 39.4%
[binomial] Running Binomial Method... 39.5%
[binomial] Running Binomial Method... 39.5%
[binomial] Running Binomial Method... 39.6%
[binomial] Running Binomial Method... 39.7%
[binomial] Running Binomial Method... 39.8%
[binomial] Running Binomial Method... 39.9%
[binomial] Running Binomial Method... 40.0%
[binomial] Running Binomial Method... 40.1%
[binomial] Running Binomial Method... 40.2%
[binomial] Running Binomial Method... 40.3%
[binomial] Running Binomial Method... 40.4%
[binomial] Running Binomial Method... 40.5%
[binomial] Running Binomial Method... 40.5%
[binomial] Running Binomial Method... 40.6%
[binomial] Running Binomial Method... 40.7%
[binomial] Running Binomial Method... 40.8%
[binomial] Running Binomial Method... 40.9%
[binomial] Running Binomial Method... 41.0%
[binomial] Running Binomial Method... 41.1%
[binomial] Running Binomial Method... 41.2%
[binomial] Running Binomial Method... 41.3%
[binomial] Running Binomial Method... 41.4%
[binomial] Running Binomial Method... 41.5%
[binomial] Running Binomial Method... 41.5%
[binomial] Running Binomial Method... 41.6%
[binomial] Running Binomial Method... 41.7%
[binomial] Running Binomial Method... 41.8%
[binomial] Running Binomial Method... 41.9%
[binomial] Running Binomial Method... 42.0%
[binomial] Running Binomial Method... 42.1%
[binomial] Running Binomial Method... 42.2%
[binomial] Running Binomial Method... 42.3%
[binomial] Running Binomial Method... 42.4%
[binomial] Running Binomial Method... 42.5%
[binomial] Running Binomial Method... 42.5%
[binomial] Running Binomial Method... 42.6%
[binomial] Running Binomial Method... 42.7%
[binomial] Running Binomial Method... 42.8%
[binomial] Running Binomial Method... 42.9%
[binomial] Running Binomial Method... 43.0%
[binomial] Running Binomial Method... 43.1%
[binomial] Running Binomial Method... 43.2%
[binomial] Running Binomial Method... 43.3%
[binomial] Running Binomial Method... 43.4%
[binomial] Running Binomial Method... 43.5%
[binomial] Running Binomial Method... 43.5%
[binomial] Running Binomial Method... 43.6%
[binomial] Running Binomial Method... 43.7%
[binomial] Running Binomial Method... 43.8%
[binomial] Running Binomial Method... 43.9%
[binomial] Running Binomial Method... 44.0%
[binomial] Running Binomial Method... 44.1%
[binomial] Running Binomial Method... 44.2%
[binomial] Running Binomial Method... 44.3%
[binomial] Running Binomial Method... 44.4%
[binomial] Running Binomial Method... 44.5%
[binomial] Running Binomial Method... 44.5%
[binomial] Running Binomial Method... 44.6%
[binomial] Running Binomial Method... 44.7%
[binomial] Running Binomial Method... 44.8%
[binomial] Running Binomial Method... 44.9%
[binomial] Running Binomial Method... 45.0%
[binomial] Running Binomial Method... 45.1%
[binomial] Running Binomial Method... 45.2%
[binomial] Running Binomial Method... 45.3%
[binomial] Running Binomial Method... 45.4%
[binomial] Running Binomial Method... 45.5%
[binomial] Running Binomial Method... 45.5%
[binomial] Running Binomial Method... 45.6%
[binomial] Running Binomial Method... 45.7%
[binomial] Running Binomial Method... 45.8%
[binomial] Running Binomial Method... 45.9%
[binomial] Running Binomial Method... 46.0%
[binomial] Running Binomial Method... 46.1%
[binomial] Running Binomial Method... 46.2%
[binomial] Running Binomial Method... 46.3%
[binomial] Running Binomial Method... 46.4%
[binomial] Running Binomial Method... 46.5%
[binomial] Running Binomial Method... 46.5%
[binomial] Running Binomial Method... 46.6%
[binomial] Running Binomial Method... 46.7%
[binomial] Running Binomial Method... 46.8%
[binomial] Running Binomial Method... 46.9%
[binomial] Running Binomial Method... 47.0%
[binomial] Running Binomial Method... 47.1%
[binomial] Running Binomial Method... 47.2%
[binomial] Running Binomial Method... 47.3%
[binomial] Running Binomial Method... 47.4%
[binomial] Running Binomial Method... 47.5%
[binomial] Running Binomial Method... 47.5%
[binomial] Running Binomial Method... 47.6%
[binomial] Running Binomial Method... 47.7%
[binomial] Running Binomial Method... 47.8%
[binomial] Running Binomial Method... 47.9%
[binomial] Running Binomial Method... 48.0%
[binomial] Running Binomial Method... 48.1%
[binomial] Running Binomial Method... 48.2%
[binomial] Running Binomial Method... 48.3%
[binomial] Running Binomial Method... 48.4%
[binomial] Running Binomial Method... 48.5%
[binomial] Running Binomial Method... 48.5%
[binomial] Running Binomial Method... 48.6%
[binomial] Running Binomial Method... 48.7%
[binomial] Running Binomial Method... 48.8%
[binomial] Running Binomial Method... 48.9%
[binomial] Running Binomial Method... 49.0%
[binomial] Running Binomial Method... 49.1%
[binomial] Running Binomial Method... 49.2%
[binomial] Running Binomial Method... 49.3%
[binomial] Running Binomial Method... 49.4%
[binomial] Running Binomial Method... 49.5%
[binomial] Running Binomial Method... 49.5%
[binomial] Running Binomial Method... 49.6%
[binomial] Running Binomial Method... 49.7%
[binomial] Running Binomial Method... 49.8%
[binomial] Running Binomial Method... 49.9%
[binomial] Running Binomial Method... 50.0%
[binomial] Running Binomial Method... 50.1%
[binomial] Running Binomial Method... 50.2%
[binomial] Running Binomial Method... 50.3%
[binomial] Running Binomial Method... 50.4%
[binomial] Running Binomial Method... 50.5%
[binomial] Running Binomial Method... 50.5%
[binomial] Running Binomial Method... 50.6%
[binomial] Running Binomial Method... 50.7%
[binomial] Running Binomial Method... 50.8%
[binomial] Running Binomial Method... 50.9%
[binomial] Running Binomial Method... 51.0%
[binomial] Running Binomial Method... 51.1%
[binomial] Running Binomial Method... 51.2%
[binomial] Running Binomial Method... 51.3%
[binomial] Running Binomial Method... 51.4%
[binomial] Running Binomial Method... 51.5%
[binomial] Running Binomial Method... 51.5%
[binomial] Running Binomial Method... 51.6%
[binomial] Running Binomial Method... 51.7%
[binomial] Running Binomial Method... 51.8%
[binomial] Running Binomial Method... 51.9%
[binomial] Running Binomial Method... 52.0%
[binomial] Running Binomial Method... 52.1%
[binomial] Running Binomial Method... 52.2%
[binomial] Running Binomial Method... 52.3%
[binomial] Running Binomial Method... 52.4%
[binomial] Running Binomial Method... 52.5%
[binomial] Running Binomial Method... 52.5%
[binomial] Running Binomial Method... 52.6%
[binomial] Running Binomial Method... 52.7%
[binomial] Running Binomial Method... 52.8%
[binomial] Running Binomial Method... 52.9%
[binomial] Running Binomial Method... 53.0%
[binomial] Running Binomial Method... 53.1%
[binomial] Running Binomial Method... 53.2%
[binomial] Running Binomial Method... 53.3%
[binomial] Running Binomial Method... 53.4%
[binomial] Running Binomial Method... 53.5%
[binomial] Running Binomial Method... 53.5%
[binomial] Running Binomial Method... 53.6%
[binomial] Running Binomial Method... 53.7%
[binomial] Running Binomial Method... 53.8%
[binomial] Running Binomial Method... 53.9%
[binomial] Running Binomial Method... 54.0%
[binomial] Running Binomial Method... 54.1%
[binomial] Running Binomial Method... 54.2%
[binomial] Running Binomial Method... 54.3%
[binomial] Running Binomial Method... 54.4%
[binomial] Running Binomial Method... 54.5%
[binomial] Running Binomial Method... 54.5%
[binomial] Running Binomial Method... 54.6%
[binomial] Running Binomial Method... 54.7%
[binomial] Running Binomial Method... 54.8%
[binomial] Running Binomial Method... 54.9%
[binomial] Running Binomial Method... 55.0%
[binomial] Running Binomial Method... 55.1%
[binomial] Running Binomial Method... 55.2%
[binomial] Running Binomial Method... 55.3%
[binomial] Running Binomial Method... 55.4%
[binomial] Running Binomial Method... 55.5%
[binomial] Running Binomial Method... 55.5%
[binomial] Running Binomial Method... 55.6%
[binomial] Running Binomial Method... 55.7%
[binomial] Running Binomial Method... 55.8%
[binomial] Running Binomial Method... 55.9%
[binomial] Running Binomial Method... 56.0%
[binomial] Running Binomial Method... 56.1%
[binomial] Running Binomial Method... 56.2%
[binomial] Running Binomial Method... 56.3%
[binomial] Running Binomial Method... 56.4%
[binomial] Running Binomial Method... 56.5%
[binomial] Running Binomial Method... 56.5%
[binomial] Running Binomial Method... 56.6%
[binomial] Running Binomial Method... 56.7%
[binomial] Running Binomial Method... 56.8%
[binomial] Running Binomial Method... 56.9%
[binomial] Running Binomial Method... 57.0%
[binomial] Running Binomial Method... 57.1%
[binomial] Running Binomial Method... 57.2%
[binomial] Running Binomial Method... 57.3%
[binomial] Running Binomial Method... 57.4%
[binomial] Running Binomial Method... 57.5%
[binomial] Running Binomial Method... 57.5%
[binomial] Running Binomial Method... 57.6%
[binomial] Running Binomial Method... 57.7%
[binomial] Running Binomial Method... 57.8%
[binomial] Running Binomial Method... 57.9%
[binomial] Running Binomial Method... 58.0%
[binomial] Running Binomial Method... 58.1%
[binomial] Running Binomial Method... 58.2%
[binomial] Running Binomial Method... 58.3%
[binomial] Running Binomial Method... 58.4%
[binomial] Running Binomial Method... 58.5%
[binomial] Running Binomial Method... 58.5%
[binomial] Running Binomial Method... 58.6%
[binomial] Running Binomial Method... 58.7%
[binomial] Running Binomial Method... 58.8%
[binomial] Running Binomial Method... 58.9%
[binomial] Running Binomial Method... 59.0%
[binomial] Running Binomial Method... 59.1%
[binomial] Running Binomial Method... 59.2%
[binomial] Running Binomial Method... 59.3%
[binomial] Running Binomial Method... 59.4%
[binomial] Running Binomial Method... 59.5%
[binomial] Running Binomial Method... 59.5%
[binomial] Running Binomial Method... 59.6%
[binomial] Running Binomial Method... 59.7%
[binomial] Running Binomial Method... 59.8%
[binomial] Running Binomial Method... 59.9%
[binomial] Running Binomial Method... 60.0%
[binomial] Running Binomial Method... 60.1%
[binomial] Running Binomial Method... 60.2%
[binomial] Running Binomial Method... 60.3%
[binomial] Running Binomial Method... 60.4%
[binomial] Running Binomial Method... 60.5%
[binomial] Running Binomial Method... 60.5%
[binomial] Running Binomial Method... 60.6%
[binomial] Running Binomial Method... 60.7%
[binomial] Running Binomial Method... 60.8%
[binomial] Running Binomial Method... 60.9%
[binomial] Running Binomial Method... 61.0%
[binomial] Running Binomial Method... 61.1%
[binomial] Running Binomial Method... 61.2%
[binomial] Running Binomial Method... 61.3%
[binomial] Running Binomial Method... 61.4%
[binomial] Running Binomial Method... 61.5%
[binomial] Running Binomial Method... 61.5%
[binomial] Running Binomial Method... 61.6%
[binomial] Running Binomial Method... 61.7%
[binomial] Running Binomial Method... 61.8%
[binomial] Running Binomial Method... 61.9%
[binomial] Running Binomial Method... 62.0%
[binomial] Running Binomial Method... 62.1%
[binomial] Running Binomial Method... 62.2%
[binomial] Running Binomial Method... 62.3%
[binomial] Running Binomial Method... 62.4%
[binomial] Running Binomial Method... 62.5%
[binomial] Running Binomial Method... 62.5%
[binomial] Running Binomial Method... 62.6%
[binomial] Running Binomial Method... 62.7%
[binomial] Running Binomial Method... 62.8%
[binomial] Running Binomial Method... 62.9%
[binomial] Running Binomial Method... 63.0%
[binomial] Running Binomial Method... 63.1%
[binomial] Running Binomial Method... 63.2%
[binomial] Running Binomial Method... 63.3%
[binomial] Running Binomial Method... 63.4%
[binomial] Running Binomial Method... 63.5%
[binomial] Running Binomial Method... 63.5%
[binomial] Running Binomial Method... 63.6%
[binomial] Running Binomial Method... 63.7%
[binomial] Running Binomial Method... 63.8%
[binomial] Running Binomial Method... 63.9%
[binomial] Running Binomial Method... 64.0%
[binomial] Running Binomial Method... 64.1%
[binomial] Running Binomial Method... 64.2%
[binomial] Running Binomial Method... 64.3%
[binomial] Running Binomial Method... 64.4%
[binomial] Running Binomial Method... 64.5%
[binomial] Running Binomial Method... 64.5%
[binomial] Running Binomial Method... 64.6%
[binomial] Running Binomial Method... 64.7%
[binomial] Running Binomial Method... 64.8%
[binomial] Running Binomial Method... 64.9%
[binomial] Running Binomial Method... 65.0%
[binomial] Running Binomial Method... 65.1%
[binomial] Running Binomial Method... 65.2%
[binomial] Running Binomial Method... 65.3%
[binomial] Running Binomial Method... 65.4%
[binomial] Running Binomial Method... 65.5%
[binomial] Running Binomial Method... 65.5%
[binomial] Running Binomial Method... 65.6%
[binomial] Running Binomial Method... 65.7%
[binomial] Running Binomial Method... 65.8%
[binomial] Running Binomial Method... 65.9%
[binomial] Running Binomial Method... 66.0%
[binomial] Running Binomial Method... 66.1%
[binomial] Running Binomial Method... 66.2%
[binomial] Running Binomial Method... 66.3%
[binomial] Running Binomial Method... 66.4%
[binomial] Running Binomial Method... 66.5%
[binomial] Running Binomial Method... 66.5%
[binomial] Running Binomial Method... 66.6%
[binomial] Running Binomial Method... 66.7%
[binomial] Running Binomial Method... 66.8%
[binomial] Running Binomial Method... 66.9%
[binomial] Running Binomial Method... 67.0%
[binomial] Running Binomial Method... 67.1%
[binomial] Running Binomial Method... 67.2%
[binomial] Running Binomial Method... 67.3%
[binomial] Running Binomial Method... 67.4%
[binomial] Running Binomial Method... 67.5%
[binomial] Running Binomial Method... 67.5%
[binomial] Running Binomial Method... 67.6%
[binomial] Running Binomial Method... 67.7%
[binomial] Running Binomial Method... 67.8%
[binomial] Running Binomial Method... 67.9%
[binomial] Running Binomial Method... 68.0%
[binomial] Running Binomial Method... 68.1%
[binomial] Running Binomial Method... 68.2%
[binomial] Running Binomial Method... 68.3%
[binomial] Running Binomial Method... 68.4%
[binomial] Running Binomial Method... 68.5%
[binomial] Running Binomial Method... 68.5%
[binomial] Running Binomial Method... 68.6%
[binomial] Running Binomial Method... 68.7%
[binomial] Running Binomial Method... 68.8%
[binomial] Running Binomial Method... 68.9%
[binomial] Running Binomial Method... 69.0%
[binomial] Running Binomial Method... 69.1%
[binomial] Running Binomial Method... 69.2%
[binomial] Running Binomial Method... 69.3%
[binomial] Running Binomial Method... 69.4%
[binomial] Running Binomial Method... 69.5%
[binomial] Running Binomial Method... 69.5%
[binomial] Running Binomial Method... 69.6%
[binomial] Running Binomial Method... 69.7%
[binomial] Running Binomial Method... 69.8%
[binomial] Running Binomial Method... 69.9%
[binomial] Running Binomial Method... 70.0%
[binomial] Running Binomial Method... 70.1%
[binomial] Running Binomial Method... 70.2%
[binomial] Running Binomial Method... 70.3%
[binomial] Running Binomial Method... 70.4%
[binomial] Running Binomial Method... 70.5%
[binomial] Running Binomial Method... 70.5%
[binomial] Running Binomial Method... 70.6%
[binomial] Running Binomial Method... 70.7%
[binomial] Running Binomial Method... 70.8%
[binomial] Running Binomial Method... 70.9%
[binomial] Running Binomial Method... 71.0%
[binomial] Running Binomial Method... 71.1%
[binomial] Running Binomial Method... 71.2%
[binomial] Running Binomial Method... 71.3%
[binomial] Running Binomial Method... 71.4%
[binomial] Running Binomial Method... 71.5%
[binomial] Running Binomial Method... 71.5%
[binomial] Running Binomial Method... 71.6%
[binomial] Running Binomial Method... 71.7%
[binomial] Running Binomial Method... 71.8%
[binomial] Running Binomial Method... 71.9%
[binomial] Running Binomial Method... 72.0%
[binomial] Running Binomial Method... 72.1%
[binomial] Running Binomial Method... 72.2%
[binomial] Running Binomial Method... 72.3%
[binomial] Running Binomial Method... 72.4%
[binomial] Running Binomial Method... 72.5%
[binomial] Running Binomial Method... 72.5%
[binomial] Running Binomial Method... 72.6%
[binomial] Running Binomial Method... 72.7%
[binomial] Running Binomial Method... 72.8%
[binomial] Running Binomial Method... 72.9%
[binomial] Running Binomial Method... 73.0%
[binomial] Running Binomial Method... 73.1%
[binomial] Running Binomial Method... 73.2%
[binomial] Running Binomial Method... 73.3%
[binomial] Running Binomial Method... 73.4%
[binomial] Running Binomial Method... 73.5%
[binomial] Running Binomial Method... 73.5%
[binomial] Running Binomial Method... 73.6%
[binomial] Running Binomial Method... 73.7%
[binomial] Running Binomial Method... 73.8%
[binomial] Running Binomial Method... 73.9%
[binomial] Running Binomial Method... 74.0%
[binomial] Running Binomial Method... 74.1%
[binomial] Running Binomial Method... 74.2%
[binomial] Running Binomial Method... 74.3%
[binomial] Running Binomial Method... 74.4%
[binomial] Running Binomial Method... 74.5%
[binomial] Running Binomial Method... 74.5%
[binomial] Running Binomial Method... 74.6%
[binomial] Running Binomial Method... 74.7%
[binomial] Running Binomial Method... 74.8%
[binomial] Running Binomial Method... 74.9%
[binomial] Running Binomial Method... 75.0%
[binomial] Running Binomial Method... 75.1%
[binomial] Running Binomial Method... 75.2%
[binomial] Running Binomial Method... 75.3%
[binomial] Running Binomial Method... 75.4%
[binomial] Running Binomial Method... 75.5%
[binomial] Running Binomial Method... 75.5%
[binomial] Running Binomial Method... 75.6%
[binomial] Running Binomial Method... 75.7%
[binomial] Running Binomial Method... 75.8%
[binomial] Running Binomial Method... 75.9%
[binomial] Running Binomial Method... 76.0%
[binomial] Running Binomial Method... 76.1%
[binomial] Running Binomial Method... 76.2%
[binomial] Running Binomial Method... 76.3%
[binomial] Running Binomial Method... 76.4%
[binomial] Running Binomial Method... 76.5%
[binomial] Running Binomial Method... 76.5%
[binomial] Running Binomial Method... 76.6%
[binomial] Running Binomial Method... 76.7%
[binomial] Running Binomial Method... 76.8%
[binomial] Running Binomial Method... 76.9%
[binomial] Running Binomial Method... 77.0%
[binomial] Running Binomial Method... 77.1%
[binomial] Running Binomial Method... 77.2%
[binomial] Running Binomial Method... 77.3%
[binomial] Running Binomial Method... 77.4%
[binomial] Running Binomial Method... 77.5%
[binomial] Running Binomial Method... 77.5%
[binomial] Running Binomial Method... 77.6%
[binomial] Running Binomial Method... 77.7%
[binomial] Running Binomial Method... 77.8%
[binomial] Running Binomial Method... 77.9%
[binomial] Running Binomial Method... 78.0%
[binomial] Running Binomial Method... 78.1%
[binomial] Running Binomial Method... 78.2%
[binomial] Running Binomial Method... 78.3%
[binomial] Running Binomial Method... 78.4%
[binomial] Running Binomial Method... 78.5%
[binomial] Running Binomial Method... 78.5%
[binomial] Running Binomial Method... 78.6%
[binomial] Running Binomial Method... 78.7%
[binomial] Running Binomial Method... 78.8%
[binomial] Running Binomial Method... 78.9%
[binomial] Running Binomial Method... 79.0%
[binomial] Running Binomial Method... 79.1%
[binomial] Running Binomial Method... 79.2%
[binomial] Running Binomial Method... 79.3%
[binomial] Running Binomial Method... 79.4%
[binomial] Running Binomial Method... 79.5%
[binomial] Running Binomial Method... 79.5%
[binomial] Running Binomial Method... 79.6%
[binomial] Running Binomial Method... 79.7%
[binomial] Running Binomial Method... 79.8%
[binomial] Running Binomial Method... 79.9%
[binomial] Running Binomial Method... 80.0%
[binomial] Running Binomial Method... 80.1%
[binomial] Running Binomial Method... 80.2%
[binomial] Running Binomial Method... 80.3%
[binomial] Running Binomial Method... 80.4%
[binomial] Running Binomial Method... 80.5%
[binomial] Running Binomial Method... 80.5%
[binomial] Running Binomial Method... 80.6%
[binomial] Running Binomial Method... 80.7%
[binomial] Running Binomial Method... 80.8%
[binomial] Running Binomial Method... 80.9%
[binomial] Running Binomial Method... 81.0%
[binomial] Running Binomial Method... 81.1%
[binomial] Running Binomial Method... 81.2%
[binomial] Running Binomial Method... 81.3%
[binomial] Running Binomial Method... 81.4%
[binomial] Running Binomial Method... 81.5%
[binomial] Running Binomial Method... 81.5%
[binomial] Running Binomial Method... 81.6%
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test_GI (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
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for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[binomial]
[binomial] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[binomial] Finished Binomial Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_GI
####################
[gi] Starting Genetic Interactions Method
[gi] Getting Data
[gi] Normalizing using: TTR
[gi] Running GI Method... 2%
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/usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='w' encoding='UTF-8'>
method()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_Griffin (tests.test_analysis_methods.TestMethods) ... [gi] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[gi] Finished Genetic Interactions Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_Griffin
####################
[griffin] Starting Griffin Method
[griffin] Getting Data
[griffin] Running Griffin Method... 2.0%
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ok
test_Gumbel (tests.test_analysis_methods.TestMethods) ... [griffin]
[griffin] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[griffin] Finished Griffin Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_Gumbel
####################
[gumbel] Reading Annotation
[gumbel] Getting Data
[gumbel] Doing Regression
[gumbel] Setting Initial Class
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 0.3%
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[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 7.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 8.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 9.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 10.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 11.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 12.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 13.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 14.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 15.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 16.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 17.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 18.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 19.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 20.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 21.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 22.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 23.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 24.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 25.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 26.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 27.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 28.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 29.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 30.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 31.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 32.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 33.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 34.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 35.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 36.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 37.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 38.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 39.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 40.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 41.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 42.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 43.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 44.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 45.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 46.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 47.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 48.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 49.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 50.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 51.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 52.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 53.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 54.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 55.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 56.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 57.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 58.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 59.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 60.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 61.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 62.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 63.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 64.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 65.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 66.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 67.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 68.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 69.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 70.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 71.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 72.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 73.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 74.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 75.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 76.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 77.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 78.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 79.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 80.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 81.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 82.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 83.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 84.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 85.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 86.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 87.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 88.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 89.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 90.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 91.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 92.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 93.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 94.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 95.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 96.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 97.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 98.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.0%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.1%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.2%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.3%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.4%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.5%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.6%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.7%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.8%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 99.9%
[gumbel] Running Gumbel Method with Binomial Essentiality Calls... 100.0%
ok
test_HMM (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/analysis/hmm.py:194: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
T = len([1 for line in open(ctrldata[0]).readlines() if not line.startswith("#")])
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
for line in open(path):
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/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[gumbel]
[gumbel] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[gumbel] Finished Gumbel Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_HMM
####################
[hmm] Starting HMM Method
[hmm] Getting Data
[hmm] Normalizing using: TTR
[hmm] Running HMM Method... 2.5%
[hmm] Running HMM Method... 5.0%
[hmm] Running HMM Method... 7.5%
[hmm] Running HMM Method... 10.0%
[hmm] Running HMM Method... 12.5%
[hmm] Running HMM Method... 15.0%
[hmm] Running HMM Method... 17.5%
[hmm] Running HMM Method... 20.0%
[hmm] Running HMM Method... 22.5%
[hmm] Running HMM Method... 25.0%
[hmm] Running HMM Method... 27.5%
[hmm] Running HMM Method... 30.0%
[hmm] Running HMM Method... 32.5%
[hmm] Running HMM Method... 35.0%
[hmm] Running HMM Method... 37.5%
[hmm] Running HMM Method... 40.0%
[hmm] Running HMM Method... 42.5%
[hmm] Running HMM Method... 45.0%
[hmm] Running HMM Method... 47.5%
[hmm] Running HMM Method... 50.0%
[hmm] Running HMM Method... 50.0%
[hmm] Running HMM Method... 52.5%
[hmm] Running HMM Method... 55.0%
[hmm] Running HMM Method... 57.5%
[hmm] Running HMM Method... 60.0%
[hmm] Running HMM Method... 62.5%
[hmm] Running HMM Method... 65.0%
[hmm] Running HMM Method... 67.5%
[hmm] Running HMM Method... 70.0%
[hmm] Running HMM Method... 72.5%
[hmm] Running HMM Method... 75.0%
[hmm] Running HMM Method... 77.5%
[hmm] Running HMM Method... 80.0%
[hmm] Running HMM Method... 82.5%
[hmm] Running HMM Method... 85.0%
[hmm] Running HMM Method... 87.5%
[hmm] Running HMM Method... 90.0%
[hmm] Running HMM Method... 92.5%
[hmm] Running HMM Method... 95.0%
[hmm] Running HMM Method... 97.5%
ok
test_anova (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/analysis/base.py:629: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/samples_metadata_cg.txt' mode='r' encoding='UTF-8'>
for line in open(self.metadata):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:124: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[hmm]
[hmm] Finished HMM - Sites Method
[hmm] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[hmm] Creating HMM Genes Level Output
[hmm] Adding File: /<<PKGBUILDDIR>>/tests/testoutput_genes.txt
[hmm] Finished HMM Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_anova
####################
[anova] Starting Anova analysis
[anova] Getting Data
[anova] Normalizing using: TTR
['condition', 'filename']
[]
[]
[anova] Running Anova
[anova] Running Anova Method... 2.0%
[anova] Running Anova Method... 3.9%
[anova] Running Anova Method... 5.9%
[anova] Running Anova Method... 7.8%
[anova] Running Anova Method... 9.8%
[anova] Running Anova Method... 11.8%
[anova] Running Anova Method... 13.7%
[anova] Running Anova Method... 15.7%
[anova] Running Anova Method... 17.6%
[anova] Running Anova Method... 19.6%
[anova] Running Anova Method... 21.6%
[anova] Running Anova Method... 23.5%
[anova] Running Anova Method... 25.5%
[anova] Running Anova Method... 27.5%
[anova] Running Anova Method... 29.4%
[anova] Running Anova Method... 31.4%
[anova] Running Anova Method... 33.3%
[anova] Running Anova Method... 35.3%
[anova] Running Anova Method... 37.3%
[anova] Running Anova Method... 39.2%
[anova] Running Anova Method... 41.2%
[anova] Running Anova Method... 43.1%
[anova] Running Anova Method... 45.1%
[anova] Running Anova Method... 47.1%
[anova] Running Anova Method... 49.0%
[anova] Running Anova Method... 51.0%
[anova] Running Anova Method... 52.9%
[anova] Running Anova Method... 54.9%
[anova] Running Anova Method... 56.9%
[anova] Running Anova Method... 58.8%
[anova] Running Anova Method... 60.8%
[anova] Running Anova Method... 62.7%
[anova] Running Anova Method... 64.7%
[anova] Running Anova Method... 66.7%
[anova] Running Anova Method... 68.6%
[anova] Running Anova Method... 70.6%
[anova] Running Anova Method... 72.5%
[anova] Running Anova Method... 74.5%
[anova] Running Anova Method... 76.5%
[anova] Running Anova Method... 78.4%
[anova] Running Anova Method... 80.4%
[anova] Running Anova Method... 82.4%
[anova] Running Anova Method... 84.3%
[anova] Running Anova Method... 86.3%
[anova] Running Anova Method... 88.2%
[anova] Running Anova Method... 90.2%
[anova] Running Anova Method... 92.2%
[anova] Running Anova Method... 94.1%
[anova] Running Anova Method... 96.1%
[anova] Running Anova Method... 98.0%
[anova] Running Anova Method... 100.0%
/<<PKGBUILDDIR>>/tests/transit_test.py:89: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:913: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:930: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1290: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1217: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:521: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[anova] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[anova] Finished Anova analysis
[anova] Time: 1.7s
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Performing LOESS Correction
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Performing LOESS Correction
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
[resampling] Running Resampling Method... 9.8%
[resampling] Running Resampling Method... 11.8%
[resampling] Running Resampling Method... 13.7%
[resampling] Running Resampling Method... 15.7%
[resampling] Running Resampling Method... 17.6%
[resampling] Running Resampling Method... 19.6%
[resampling] Running Resampling Method... 21.6%
[resampling] Running Resampling Method... 23.5%
[resampling] Running Resampling Method... 25.5%
[resampling] Running Resampling Method... 27.5%
[resampling] Running Resampling Method... 29.4%
[resampling] Running Resampling Method... 31.4%
[resampling] Running Resampling Method... 33.3%
[resampling] Running Resampling Method... 35.3%
[resampling] Running Resampling Method... 37.3%
[resampling] Running Resampling Method... 39.2%
[resampling] Running Resampling Method... 41.2%
[resampling] Running Resampling Method... 43.1%
[resampling] Running Resampling Method... 45.1%
[resampling] Running Resampling Method... 47.1%
[resampling] Running Resampling Method... 49.0%
[resampling] Running Resampling Method... 51.0%
[resampling] Running Resampling Method... 52.9%
[resampling] Running Resampling Method... 54.9%
[resampling] Running Resampling Method... 56.9%
[resampling] Running Resampling Method... 58.8%
[resampling] Running Resampling Method... 60.8%
[resampling] Running Resampling Method... 62.7%
[resampling] Running Resampling Method... 64.7%
[resampling] Running Resampling Method... 66.7%
[resampling] Running Resampling Method... 68.6%
[resampling] Running Resampling Method... 70.6%
[resampling] Running Resampling Method... 72.5%
[resampling] Running Resampling Method... 74.5%
[resampling] Running Resampling Method... 76.5%
[resampling] Running Resampling Method... 78.4%
[resampling] Running Resampling Method... 80.4%
[resampling] Running Resampling Method... 82.4%
[resampling] Running Resampling Method... 84.3%
[resampling] Running Resampling Method... 86.3%
[resampling] Running Resampling Method... 88.2%
[resampling] Running Resampling Method... 90.2%
[resampling] Running Resampling Method... 92.2%
[resampling] Running Resampling Method... 94.1%
[resampling] Running Resampling Method... 96.1%
[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
/<<PKGBUILDDIR>>/tests/transit_test.py:89: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling_adaptive (tests.test_analysis_methods.TestMethods) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_adaptive
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
[resampling] Running Resampling Method... 9.8%
[resampling] Running Resampling Method... 11.8%
[resampling] Running Resampling Method... 13.7%
[resampling] Running Resampling Method... 15.7%
[resampling] Running Resampling Method... 17.6%
[resampling] Running Resampling Method... 19.6%
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[resampling] Running Resampling Method... 25.5%
[resampling] Running Resampling Method... 27.5%
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[resampling] Running Resampling Method... 31.4%
[resampling] Running Resampling Method... 33.3%
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[resampling] Running Resampling Method... 49.0%
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[resampling] Running Resampling Method... 52.9%
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[resampling] Running Resampling Method... 56.9%
[resampling] Running Resampling Method... 58.8%
[resampling] Running Resampling Method... 60.8%
[resampling] Running Resampling Method... 62.7%
[resampling] Running Resampling Method... 64.7%
[resampling] Running Resampling Method... 66.7%
[resampling] Running Resampling Method... 68.6%
[resampling] Running Resampling Method... 70.6%
[resampling] Running Resampling Method... 72.5%
[resampling] Running Resampling Method... 74.5%
[resampling] Running Resampling Method... 76.5%
[resampling] Running Resampling Method... 78.4%
[resampling] Running Resampling Method... 80.4%
[resampling] Running Resampling Method... 82.4%
[resampling] Running Resampling Method... 84.3%
[resampling] Running Resampling Method... 86.3%
[resampling] Running Resampling Method... 88.2%
[resampling] Running Resampling Method... 90.2%
[resampling] Running Resampling Method... 92.2%
[resampling] Running Resampling Method... 94.1%
[resampling] Running Resampling Method... 96.1%
[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_resampling_combined_wig (tests.test_analysis_methods.TestMethods) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_combined_wig
####################
[resampling] Starting resampling Method
[resampling] Getting Data
['condition', 'filename']
[]
[]
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
[resampling] Running Resampling Method... 9.8%
[resampling] Running Resampling Method... 11.8%
[resampling] Running Resampling Method... 13.7%
[resampling] Running Resampling Method... 15.7%
[resampling] Running Resampling Method... 17.6%
[resampling] Running Resampling Method... 19.6%
[resampling] Running Resampling Method... 21.6%
[resampling] Running Resampling Method... 23.5%
[resampling] Running Resampling Method... 25.5%
[resampling] Running Resampling Method... 27.5%
[resampling] Running Resampling Method... 29.4%
[resampling] Running Resampling Method... 31.4%
[resampling] Running Resampling Method... 33.3%
[resampling] Running Resampling Method... 35.3%
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[resampling] Running Resampling Method... 41.2%
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[resampling] Running Resampling Method... 52.9%
[resampling] Running Resampling Method... 54.9%
[resampling] Running Resampling Method... 56.9%
[resampling] Running Resampling Method... 58.8%
[resampling] Running Resampling Method... 60.8%
[resampling] Running Resampling Method... 62.7%
[resampling] Running Resampling Method... 64.7%
[resampling] Running Resampling Method... 66.7%
[resampling] Running Resampling Method... 68.6%
[resampling] Running Resampling Method... 70.6%
[resampling] Running Resampling Method... 72.5%
[resampling] Running Resampling Method... 74.5%
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[resampling] Running Resampling Method... 78.4%
[resampling] Running Resampling Method... 80.4%
[resampling] Running Resampling Method... 82.4%
[resampling] Running Resampling Method... 84.3%
[resampling] Running Resampling Method... 86.3%
[resampling] Running Resampling Method... 88.2%
[resampling] Running Resampling Method... 90.2%
[resampling] Running Resampling Method... 92.2%
[resampling] Running Resampling Method... 94.1%
[resampling] Running Resampling Method... 96.1%
[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_resampling_histogram (tests.test_analysis_methods.TestMethods) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
36
35
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_histogram
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
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[resampling] Running Resampling Method... 13.7%
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[resampling] Running Resampling Method... 96.1%
[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_resampling_multistrain (tests.test_analysis_methods.TestMethods) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing histogram files
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_resampling_multistrain
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Multiple annotation files found
[resampling] Mapping ctrl data to /<<PKGBUILDDIR>>/tests/data/test.prot_table, exp data to /<<PKGBUILDDIR>>/tests/data/test.prot_table
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
[resampling] Running Resampling Method... 9.8%
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[resampling] Running Resampling Method... 96.1%
[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_utest (tests.test_analysis_methods.TestMethods) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing histogram files
Removing output file...
####################
tests.test_analysis_methods.TestMethods.test_utest
####################
[utest] Starting Mann-Whitney U-test Method
[utest] Getting Data
[utest] Normalizing using: TTR
[utest] Running Mann-Whitney U-test Method... 2.0%
[utest] Running Mann-Whitney U-test Method... 3.9%
[utest] Running Mann-Whitney U-test Method... 5.9%
[utest] Running Mann-Whitney U-test Method... 7.8%
[utest] Running Mann-Whitney U-test Method... 9.8%
[utest] Running Mann-Whitney U-test Method... 11.8%
[utest] Running Mann-Whitney U-test Method... 13.7%
[utest] Running Mann-Whitney U-test Method... 15.7%
[utest] Running Mann-Whitney U-test Method... 17.6%
[utest] Running Mann-Whitney U-test Method... 19.6%
[utest] Running Mann-Whitney U-test Method... 21.6%
[utest] Running Mann-Whitney U-test Method... 23.5%
[utest] Running Mann-Whitney U-test Method... 25.5%
[utest] Running Mann-Whitney U-test Method... 27.5%
[utest] Running Mann-Whitney U-test Method... 29.4%
[utest] Running Mann-Whitney U-test Method... 31.4%
[utest] Running Mann-Whitney U-test Method... 33.3%
[utest] Running Mann-Whitney U-test Method... 35.3%
[utest] Running Mann-Whitney U-test Method... 37.3%
[utest] Running Mann-Whitney U-test Method... 39.2%
[utest] Running Mann-Whitney U-test Method... 41.2%
[utest] Running Mann-Whitney U-test Method... 43.1%
[utest] Running Mann-Whitney U-test Method... 45.1%
[utest] Running Mann-Whitney U-test Method... 47.1%
[utest] Running Mann-Whitney U-test Method... 49.0%
[utest] Running Mann-Whitney U-test Method... 51.0%
[utest] Running Mann-Whitney U-test Method... 52.9%
[utest] Running Mann-Whitney U-test Method... 54.9%
[utest] Running Mann-Whitney U-test Method... 56.9%
[utest] Running Mann-Whitney U-test Method... 58.8%
[utest] Running Mann-Whitney U-test Method... 60.8%
[utest] Running Mann-Whitney U-test Method... 62.7%
[utest] Running Mann-Whitney U-test Method... 64.7%
[utest] Running Mann-Whitney U-test Method... 66.7%
[utest] Running Mann-Whitney U-test Method... 68.6%
[utest] Running Mann-Whitney U-test Method... 70.6%
[utest] Running Mann-Whitney U-test Method... 72.5%
[utest] Running Mann-Whitney U-test Method... 74.5%
[utest] Running Mann-Whitney U-test Method... 76.5%
[utest] Running Mann-Whitney U-test Method... 78.4%
[utest] Running Mann-Whitney U-test Method... 80.4%
[utest] Running Mann-Whitney U-test Method... 82.4%
[utest] Running Mann-Whitney U-test Method... 84.3%
[utest] Running Mann-Whitney U-test Method... 86.3%
[utest] Running Mann-Whitney U-test Method... 88.2%
[utest] Running Mann-Whitney U-test Method... 90.2%
[utest] Running Mann-Whitney U-test Method... 92.2%
[utest] Running Mann-Whitney U-test Method... 94.1%
[utest] Running Mann-Whitney U-test Method... 96.1%
[utest] Running Mann-Whitney U-test Method... 98.0%
[utest] Running Mann-Whitney U-test Method... 100.0%
ok
test_zinb (tests.test_analysis_methods.TestMethods) ... skipped 'requires R, rpy2'
test_zinb_covariates (tests.test_analysis_methods.TestMethods) ... skipped 'requires R, rpy2'
test_zinb_interactions (tests.test_analysis_methods.TestMethods) ... skipped 'requires R, rpy2'
test_TTR (tests.test_norm_methods.TestNormMethods) ... ok
test_nonorm (tests.test_norm_methods.TestNormMethods) ... ok
test_resampling_NZMean (tests.test_norm_methods.TestNormMethods) ... [utest]
[utest] Performing Benjamini-Hochberg Correction
[utest] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[utest] Finished Mann-Whitney U-test Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_TTR
####################
####################
tests.test_norm_methods.TestNormMethods.test_nonorm
####################
####################
tests.test_norm_methods.TestNormMethods.test_resampling_NZMean
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: nzmean
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: nzmean
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
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[resampling] Running Resampling Method... 100.0%
ok
test_resampling_Quantile (tests.test_norm_methods.TestNormMethods) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_Quantile
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: quantile
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: quantile
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
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[resampling] Running Resampling Method... 88.2%
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[resampling] Running Resampling Method... 100.0%
/<<PKGBUILDDIR>>/tests/transit_test.py:75: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling_TTR (tests.test_norm_methods.TestNormMethods) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_TTR
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
[resampling] Running Resampling Method... 9.8%
[resampling] Running Resampling Method... 11.8%
[resampling] Running Resampling Method... 13.7%
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[resampling] Running Resampling Method... 17.6%
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[resampling] Running Resampling Method... 31.4%
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[resampling] Running Resampling Method... 58.8%
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[resampling] Running Resampling Method... 62.7%
[resampling] Running Resampling Method... 64.7%
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[resampling] Running Resampling Method... 72.5%
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[resampling] Running Resampling Method... 78.4%
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[resampling] Running Resampling Method... 96.1%
[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_resampling_TotReads (tests.test_norm_methods.TestNormMethods) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_TotReads
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: totreads
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: totreads
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
[resampling] Running Resampling Method... 9.8%
[resampling] Running Resampling Method... 11.8%
[resampling] Running Resampling Method... 13.7%
[resampling] Running Resampling Method... 15.7%
[resampling] Running Resampling Method... 17.6%
[resampling] Running Resampling Method... 19.6%
[resampling] Running Resampling Method... 21.6%
[resampling] Running Resampling Method... 23.5%
[resampling] Running Resampling Method... 25.5%
[resampling] Running Resampling Method... 27.5%
[resampling] Running Resampling Method... 29.4%
[resampling] Running Resampling Method... 31.4%
[resampling] Running Resampling Method... 33.3%
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[resampling] Running Resampling Method... 41.2%
[resampling] Running Resampling Method... 43.1%
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[resampling] Running Resampling Method... 52.9%
[resampling] Running Resampling Method... 54.9%
[resampling] Running Resampling Method... 56.9%
[resampling] Running Resampling Method... 58.8%
[resampling] Running Resampling Method... 60.8%
[resampling] Running Resampling Method... 62.7%
[resampling] Running Resampling Method... 64.7%
[resampling] Running Resampling Method... 66.7%
[resampling] Running Resampling Method... 68.6%
[resampling] Running Resampling Method... 70.6%
[resampling] Running Resampling Method... 72.5%
[resampling] Running Resampling Method... 74.5%
[resampling] Running Resampling Method... 76.5%
[resampling] Running Resampling Method... 78.4%
[resampling] Running Resampling Method... 80.4%
[resampling] Running Resampling Method... 82.4%
[resampling] Running Resampling Method... 84.3%
[resampling] Running Resampling Method... 86.3%
[resampling] Running Resampling Method... 88.2%
[resampling] Running Resampling Method... 90.2%
[resampling] Running Resampling Method... 92.2%
[resampling] Running Resampling Method... 94.1%
[resampling] Running Resampling Method... 96.1%
[resampling] Running Resampling Method... 98.0%
[resampling] Running Resampling Method... 100.0%
ok
test_resampling_ZINFNB (tests.test_norm_methods.TestNormMethods) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_ZINFNB
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: zinfnb
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: zinfnb
[resampling] Running Resampling Method... 2.0%
[resampling] Running Resampling Method... 3.9%
[resampling] Running Resampling Method... 5.9%
[resampling] Running Resampling Method... 7.8%
[resampling] Running Resampling Method... 9.8%
[resampling] Running Resampling Method... 11.8%
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ok
test_resampling_nonorm (tests.test_norm_methods.TestNormMethods) ... [resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_norm_methods.TestNormMethods.test_resampling_nonorm
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
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ok
test_cleanargs_flag_arguments_w_quotes (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_cleanargs_flag_arguments_with_double_dash (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_cleanargs_flag_without_arguments (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_cleanargs_negative_arguments (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_cleanargs_positional_arguments (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_cleanargs_positional_arguments_w_quotes (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_file_types (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_genes_creation_fromdata (tests.test_pytransit_tools.TestTnSeqTools) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1290: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1217: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:521: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_genes_creation_fromwig (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_normalization (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_read_data (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_tpp_flag_primer (tests.test_tpp.TestTPP) ... skipped 'requires local data file'
test_tpp_multicontig_auto_replicon_ids (tests.test_tpp.TestTPP) ... [tn_preprocess] running pre-processing on /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq and
[tn_preprocess] protocol: Sassetti
[tn_preprocess] transposon type: Himar1
[tn_preprocess] One reference genome specified: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna, containing 3 records.
[tn_preprocess] Autogenerating replicon_ids...
[tn_preprocess] extracting reads...
[tn_preprocess] fastq2reads: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq -> /<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:85: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq' mode='r' encoding='UTF-8'>
for line in open(infile):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] assuming single-ended reads
[tn_preprocess] creating /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1
[tn_preprocess] prefix sequence:
[tn_preprocess] Looking for start of Tn prefix within P,Q = [0,20]
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:276: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'>
for line in open(infile):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] mapping reads using BWA...(this takes a couple of minutes)
[tn_preprocess] /usr/bin/bwa index /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
b'[bwa_index] Pack FASTA... 0.14 sec'
b'[bwa_index] Construct BWT for the packed sequence...'
b'[bwa_index] 5.33 seconds elapse.'
b'[bwa_index] Update BWT... 0.11 sec'
b'[bwa_index] Pack forward-only FASTA... 0.10 sec'
b'[bwa_index] Construct SA from BWT and Occ... 4.59 sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa index /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna'
b'[main] Real time: 11.207 sec; CPU: 10.279 sec'
b''
[tn_preprocess] /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1 > /<<PKGBUILDDIR>>/tests/test_tpp_temp.sam
b'[M::bwa_idx_load_from_disk] read 0 ALT contigs'
b'[M::process] read 2500 sequences (304052 bp)...'
b'[M::mem_process_seqs] Processed 2500 reads in 0.613 CPU sec, 0.613 real sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1'
b'[main] Real time: 0.762 sec; CPU: 0.664 sec'
b''
[tn_preprocess] tabulating template counts and statistics for reference genome /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:378: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test-multicontig.fna' mode='r' encoding='UTF-8'>
for line in open(filename):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:560: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.sam' mode='r' encoding='UTF-8'>
for line in open(sam):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_1.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_2.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_3.wig
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1104: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'>
read_length = get_read_length(vars.base + ".reads1")
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1105: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1' mode='r' encoding='UTF-8'>
mean_r1_genomic = get_genomic_portion(vars.base + ".trimmed1")
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1183: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1' mode='r' encoding='UTF-8'>
for line in open(vars.trimmed1):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp.tn_stats
[tn_preprocess] Done.
ok
test_tpp_multicontig_empty_prefix (tests.test_tpp.TestTPP) ... [tn_preprocess] running pre-processing on /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq and
[tn_preprocess] protocol: Sassetti
[tn_preprocess] transposon type: Himar1
[tn_preprocess] One reference genome specified: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna, containing 3 records.
[tn_preprocess] extracting reads...
[tn_preprocess] fastq2reads: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq -> /<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1
[tn_preprocess] assuming single-ended reads
[tn_preprocess] creating /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1
[tn_preprocess] prefix sequence:
[tn_preprocess] Looking for start of Tn prefix within P,Q = [0,20]
[tn_preprocess] mapping reads using BWA...(this takes a couple of minutes)
[tn_preprocess] /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1 > /<<PKGBUILDDIR>>/tests/test_tpp_temp.sam
b'[M::bwa_idx_load_from_disk] read 0 ALT contigs'
b'[M::process] read 2500 sequences (304052 bp)...'
b'[M::mem_process_seqs] Processed 2500 reads in 0.614 CPU sec, 0.614 real sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1'
b'[main] Real time: 0.732 sec; CPU: 0.665 sec'
b''
[tn_preprocess] tabulating template counts and statistics for reference genome /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_a.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_b.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_c.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp.tn_stats
[tn_preprocess] Done.
ok
test_tpp_noflag_primer (tests.test_tpp.TestTPP) ... skipped 'requires local data file'
test_tpp_protocol_mme1 (tests.test_tpp.TestTPP) ... skipped 'requires local data file'
----------------------------------------------------------------------
Ran 39 tests in 607.340s
OK (skipped=6)
[resampling]
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_w_quotes
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_with_double_dash
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_without_arguments
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_negative_arguments
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments_w_quotes
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_file_types
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromdata
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromwig
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_normalization
####################
####################
tests.test_pytransit_tools.TestTnSeqTools.test_read_data
####################
####################
tests.test_tpp.TestTPP.test_tpp_multicontig_auto_replicon_ids
####################
# title: Tn-Seq Pre-Processor
# date: 03/03/2022 10:57:42
# command: python python3.9 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py
# transposon type: Himar1
# protocol type: Sassetti
# bwa flags:
# read1: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# read2:
# ref_genome: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
# replicon_ids: 1,2,3
# total_reads (or read pairs): 2500
# truncated_reads 156 (genomic inserts shorter than the read length; ADAP2 appears in read1)
# trimmed_reads (reads with valid Tn prefix, and insert size>20bp): 2512
# reads1_mapped: 2116
# reads2_mapped: 0
# mapped_reads (both R1 and R2 map into genome, and R2 has a proper barcode): 2116
# read_count (TA sites only, for Himar1):
# 1: 63
# 2: 0
# 3: 0
# template_count:
# 1: 63
# 2: 0
# 3: 0
# template_ratio (reads per template):
# 1: 1.00
# 2: 0.00
# 3: 0.00
# TA_sites:
# 1: 89994
# 2: 646
# 3: 664
# TAs_hit:
# 1: 63
# 2: 0
# 3: 0
# density:
# 1: 0.001
# 2: 0.000
# 3: 0.000
# max_count (among templates):
# 1: 1
# 2: 0
# 3: 0
# max_site (coordinate):
# 1: 4977050
# 2: 57441
# 3: 38111
# NZ_mean (among templates):
# 1: 1.0
# 2: 0.0
# 3: 0.0
# FR_corr (Fwd templates vs. Rev templates):
# 1: -0.000
# 2: nan
# 3: nan
# BC_corr (reads vs. templates, summed over both strands):
# 1: nan
# 2: nan
# 3: nan
# Break-down of total reads (2500):
# -12 reads (-0.5%) lack the expected Tn prefix
# Break-down of trimmed reads with valid Tn prefix (2500):
# primer_matches: 36 reads (1.4%) contain CTAGAGGGCCCAATTCGCCCTATAGTGAGT (Himar1)
# vector_matches: 36 reads (1.4%) contain CTAGACCGTCCAGTCTGGCAGGCCGGAAAC (phiMycoMarT7)
# adapter_matches: 14 reads (0.6%) contain GATCGGAAGAGCACACGTCTGAACTCCAGTCAC (Illumina/TruSeq index)
# misprimed_reads: 17 reads (0.7%) contain Himar1 prefix but don't end in TGTTA
# read_length: 125 bp
# mean_R1_genomic_length: 121.6 bp
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
####################
tests.test_tpp.TestTPP.test_tpp_multicontig_empty_prefix
####################
# title: Tn-Seq Pre-Processor
# date: 03/03/2022 10:57:50
# command: python python3.9 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py
# transposon type: Himar1
# protocol type: Sassetti
# bwa flags:
# read1: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# read2:
# ref_genome: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
# replicon_ids: a,b,c
# total_reads (or read pairs): 2500
# truncated_reads 156 (genomic inserts shorter than the read length; ADAP2 appears in read1)
# trimmed_reads (reads with valid Tn prefix, and insert size>20bp): 2512
# reads1_mapped: 2116
# reads2_mapped: 0
# mapped_reads (both R1 and R2 map into genome, and R2 has a proper barcode): 2116
# read_count (TA sites only, for Himar1):
# a: 63
# b: 0
# c: 0
# template_count:
# a: 63
# b: 0
# c: 0
# template_ratio (reads per template):
# a: 1.00
# b: 0.00
# c: 0.00
# TA_sites:
# a: 89994
# b: 646
# c: 664
# TAs_hit:
# a: 63
# b: 0
# c: 0
# density:
# a: 0.001
# b: 0.000
# c: 0.000
# max_count (among templates):
# a: 1
# b: 0
# c: 0
# max_site (coordinate):
# a: 4977050
# b: 57441
# c: 38111
# NZ_mean (among templates):
# a: 1.0
# b: 0.0
# c: 0.0
# FR_corr (Fwd templates vs. Rev templates):
# a: -0.000
# b: nan
# c: nan
# BC_corr (reads vs. templates, summed over both strands):
# a: nan
# b: nan
# c: nan
# Break-down of total reads (2500):
# -12 reads (-0.5%) lack the expected Tn prefix
# Break-down of trimmed reads with valid Tn prefix (2500):
# primer_matches: 36 reads (1.4%) contain CTAGAGGGCCCAATTCGCCCTATAGTGAGT (Himar1)
# vector_matches: 36 reads (1.4%) contain CTAGACCGTCCAGTCTGGCAGGCCGGAAAC (phiMycoMarT7)
# adapter_matches: 14 reads (0.6%) contain GATCGGAAGAGCACACGTCTGAACTCCAGTCAC (Illumina/TruSeq index)
# misprimed_reads: 17 reads (0.7%) contain Himar1 prefix but don't end in TGTTA
# read_length: 125 bp
# mean_R1_genomic_length: 121.6 bp
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/tnseq-transit/ -a -O--buildsystem=pybuild
I: pybuild base:237: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/tnseq-transit
/usr/lib/python3/dist-packages/setuptools/dist.py:723: UserWarning: Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead
warnings.warn(
running install
/usr/lib/python3/dist-packages/setuptools/command/install.py:34: SetuptoolsDeprecationWarning: setup.py install is deprecated. Use build and pip and other standards-based tools.
warnings.warn(
running build
running build_py
running egg_info
writing tnseq_transit.egg-info/PKG-INFO
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing requirements to tnseq_transit.egg-info/requires.txt
writing top-level names to tnseq_transit.egg-info/top_level.txt
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'VERSION'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
adding license file 'LICENSE.md'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
running install_lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/images.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert/gff_to_prot_table.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/igv.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/prot_table.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/combined_wig.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/mean_counts.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/norm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/heatmap.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/normalize.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/tnseq_stats.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/anova.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/utest.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/corrplot.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/pathway_enrichment.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/zinb.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/gi.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/COG_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/GO_associated_Rvs.csv -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/GO_term_names.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv_COG_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv_GO_terms.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv_sanger_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/README.md -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_glycerol_combined.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/gene_ontology.1_2.3-11-18.obo -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/samples_metadata_cg.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/samples_metadata_cg_covar.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/samples_metadata_cg_interactions.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/sanger_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/smeg_GO_terms.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/tpp_gui.py to tpp_gui.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/tpp_tools.py to tpp_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/view_trash.py to view_trash.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/stat_tools.py to stat_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/fileDisplay.py to fileDisplay.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/norm_tools.py to norm_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/trash.py to trash.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/draw_trash.py to draw_trash.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/transit_gui.py to transit_gui.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/images.py to images.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/transit_tools.py to transit_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/tnseq_tools.py to tnseq_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/qcDisplay.py to qcDisplay.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert/base.py to base.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert/gff_to_prot_table.py to gff_to_prot_table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/base.py to base.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/igv.py to igv.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/prot_table.py to prot_table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/combined_wig.py to combined_wig.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/mean_counts.py to mean_counts.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/hmm.py to hmm.cpython-39.pyc
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running install_egg_info
Copying tnseq_transit.egg-info to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/tnseq_transit-3.2.3.egg-info
Skipping SOURCES.txt
running install_scripts
Installing tpp script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
Installing transit script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mv debian/tnseq-transit/usr/bin/tpp debian/tnseq-transit/usr/bin/transit-tpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_installman -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
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dh_strip_nondeterminism -a -O--buildsystem=pybuild
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dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'tnseq-transit' in '../tnseq-transit_3.2.3-2_armhf.deb'.
dpkg-genbuildinfo --build=any -O../tnseq-transit_3.2.3-2_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../tnseq-transit_3.2.3-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-03-03T10:59:03Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
tnseq-transit_3.2.3-2_armhf.changes:
------------------------------------
Format: 1.8
Date: Tue, 18 Jan 2022 18:45:30 +0100
Source: tnseq-transit
Binary: tnseq-transit
Architecture: armhf
Version: 3.2.3-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
tnseq-transit - statistical calculations of essentiality of genes or genomic regi
Changes:
tnseq-transit (3.2.3-2) unstable; urgency=medium
.
* Really fix watch file
* Add missing build dependency on dh addon.
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Checksums-Sha256:
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Files:
34347a30d3331d13be9a33f33269a0c3 7951 science optional tnseq-transit_3.2.3-2_armhf.buildinfo
4c29736032850d451070fb9effd0ec7c 8953212 science optional tnseq-transit_3.2.3-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
tnseq-transit_3.2.3-2_armhf.deb
-------------------------------
new Debian package, version 2.0.
size 8953212 bytes: control archive=3928 bytes.
1383 bytes, 28 lines control
8948 bytes, 95 lines md5sums
263 bytes, 12 lines * postinst #!/bin/sh
412 bytes, 12 lines * prerm #!/bin/sh
Package: tnseq-transit
Version: 3.2.3-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 76927
Depends: python3-matplotlib, python3-numpy, python3-pil, python3-pkg-resources, python3-pubsub, python3-scipy, python3-statsmodels, python3-wxgtk4.0, python3:any, bwa
Breaks: transit
Replaces: transit
Provides: transit
Section: science
Priority: optional
Homepage: http://saclab.tamu.edu/essentiality/transit/
Description: statistical calculations of essentiality of genes or genomic regions
This is a software that can be used to analyze Tn-Seq datasets. It
includes various statistical calculations of essentiality of genes or
genomic regions (including conditional essentiality between 2
conditions). These methods were developed and tested as a collaboration
between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)
.
TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1
or Tn5 datasets.
.
TRANSIT assumes you have already done pre-processing of raw sequencing
files (.fastq) and extracted read counts into a .wig formatted file.
The .wig file should contain the counts at all sites where an insertion
could take place (including sites with no reads). For Himar1 datasets
this is all TA sites in the genome. For Tn5 datasets this would be all
nucleotides in the genome.
drwxr-xr-x root/root 0 2022-01-18 17:45 ./
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drwxr-xr-x root/root 0 2022-01-18 17:45 ./usr/share/man/man1/
-rw-r--r-- root/root 841 2022-01-18 17:45 ./usr/share/man/man1/transit-tpp.1.gz
-rw-r--r-- root/root 457 2022-01-18 17:45 ./usr/share/man/man1/transit.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 267400
Build-Time: 694
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 789
Job: tnseq-transit_3.2.3-2
Machine Architecture: armhf
Package: tnseq-transit
Package-Time: 1505
Source-Version: 3.2.3-2
Space: 267400
Status: successful
Version: 3.2.3-2
--------------------------------------------------------------------------------
Finished at 2022-03-03T10:59:03Z
Build needed 00:25:05, 267400k disk space