Raspbian Package Auto-Building

Build log for tnseq-transit (3.2.2-1) on armhf

tnseq-transit → 3.2.2-1 → armhf → 2021-10-15 06:56:17 

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd

+==============================================================================+
| tnseq-transit 3.2.2-1 (armhf)                Fri, 15 Oct 2021 06:00:20 +0000 |
+==============================================================================+

Package: tnseq-transit
Version: 3.2.2-1
Source Version: 3.2.2-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-bc7e2ff5-f54e-4d70-a317-08dda081fd1c' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bookworm-staging/main Sources [12.4 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf Packages [13.4 MB]
Fetched 25.9 MB in 29s (907 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'tnseq-transit' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/tnseq-transit.git
Please use:
git clone https://salsa.debian.org/med-team/tnseq-transit.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 26.9 MB of source archives.
Get:1 http://172.17.0.1/private bookworm-staging/main tnseq-transit 3.2.2-1 (dsc) [2213 B]
Get:2 http://172.17.0.1/private bookworm-staging/main tnseq-transit 3.2.2-1 (tar) [26.9 MB]
Get:3 http://172.17.0.1/private bookworm-staging/main tnseq-transit 3.2.2-1 (diff) [6184 B]
Fetched 26.9 MB in 8s (3459 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tnseq-transit-mkwiFB/tnseq-transit-3.2.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tnseq-transit-mkwiFB' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-8n5ATl/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-8n5ATl/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-8n5ATl/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ Packages [434 B]
Fetched 2110 B in 1s (2813 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 35 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (17.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12484 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-statsmodels, python3-pubsub, bwa
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-statsmodels, python3-pubsub, bwa
dpkg-deb: building package 'sbuild-build-depends-tnseq-transit-dummy' in '/<<BUILDDIR>>/resolver-8n5ATl/apt_archive/sbuild-build-depends-tnseq-transit-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-tnseq-transit-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ Sources [556 B]
Get:5 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ Packages [640 B]
Fetched 2529 B in 1s (3457 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install tnseq-transit build dependencies (apt-based resolver)
-------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
  netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils bwa debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx
  gcc-11-base gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libasan6 libatomic1 libblas3 libbrotli1 libbsd0 libcc1-0
  libdebhelper-perl libdeflate0 libelf1 libexpat1 libexpat1-dev libffi8
  libfile-stripnondeterminism-perl libfreetype6 libgcc-s1 libgfortran5
  libgomp1 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
  libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
  liblcms2-2 libmagic-mgc libmagic1 libmd0 libmpdec3 libpipeline1 libpng16-16
  libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev
  libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libstdc++6
  libsub-override-perl libtiff5 libtool libubsan1 libuchardet0 libwebp6
  libwebpdemux2 libwebpmux3 libxau6 libxcb1 libxdmcp6 libxml2 m4 mailcap
  man-db media-types mime-support po-debconf python-matplotlib-data python3
  python3-cycler python3-dateutil python3-decorator python3-dev
  python3-distutils python3-kiwisolver python3-lib2to3 python3-matplotlib
  python3-minimal python3-numpy python3-pandas python3-pandas-lib
  python3-patsy python3-pil python3-pkg-resources python3-pubsub
  python3-pyparsing python3-scipy python3-setuptools python3-six
  python3-statsmodels python3-statsmodels-lib python3-tz python3.9
  python3.9-dev python3.9-minimal sensible-utils ttf-bitstream-vera zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc samtools dh-make gettext-doc
  libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs liblcms2-utils
  libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
  www-browser libmail-box-perl python3-doc python3-tk python3-venv
  python-cycler-doc dvipng ffmpeg ghostscript gir1.2-gtk-3.0 inkscape ipython3
  librsvg2-common python-matplotlib-doc python3-cairocffi python3-gi
  python3-gi-cairo python3-gobject python3-nose python3-pyqt5 python3-sip
  python3-tornado texlive-extra-utils texlive-latex-extra ttf-staypuft
  gfortran python-numpy-doc python3-numpy-dbg python3-pytest python-pandas-doc
  python-patsy-doc python-pil-doc python3-pil-dbg python-pyparsing-doc
  python-scipy-doc python-setuptools-doc python-statsmodels-doc python3.9-venv
  python3.9-doc binfmt-support
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl javascript-common ca-certificates
  libltdl-dev libmail-sendmail-perl python3-tk python3-bottleneck
  python3-numexpr python3-odf python3-openpyxl python3-xlwt python3-bs4
  python3-html5lib python3-lxml python3-tables python3-jinja2 python3-olefile
  python3-joblib python3-colorama python3-cvxopt
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils bwa debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libblas3
  libbrotli1 libbsd0 libdebhelper-perl libdeflate0 libelf1 libexpat1
  libexpat1-dev libffi8 libfile-stripnondeterminism-perl libfreetype6
  libgfortran5 libicu67 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
  libjs-jquery-ui libjs-sphinxdoc libjs-underscore liblapack3 liblbfgsb0
  liblcms2-2 libmagic-mgc libmagic1 libmd0 libmpdec3 libpipeline1 libpng16-16
  libpython3-dev libpython3-stdlib libpython3.9 libpython3.9-dev
  libpython3.9-minimal libpython3.9-stdlib libsigsegv2 libsub-override-perl
  libtiff5 libtool libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxau6
  libxcb1 libxdmcp6 libxml2 m4 mailcap man-db media-types mime-support
  po-debconf python-matplotlib-data python3 python3-cycler python3-dateutil
  python3-decorator python3-dev python3-distutils python3-kiwisolver
  python3-lib2to3 python3-matplotlib python3-minimal python3-numpy
  python3-pandas python3-pandas-lib python3-patsy python3-pil
  python3-pkg-resources python3-pubsub python3-pyparsing python3-scipy
  python3-setuptools python3-six python3-statsmodels python3-statsmodels-lib
  python3-tz python3.9 python3.9-dev python3.9-minimal
  sbuild-build-depends-tnseq-transit-dummy sensible-utils ttf-bitstream-vera
  zlib1g-dev
The following packages will be upgraded:
  gcc-11-base libasan6 libatomic1 libcc1-0 libgcc-s1 libgomp1 libstdc++6
  libubsan1
8 upgraded, 103 newly installed, 0 to remove and 27 not upgraded.
Need to get 73.5 MB of archives.
After this operation, 280 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-8n5ATl/apt_archive ./ sbuild-build-depends-tnseq-transit-dummy 0.invalid.0 [928 B]
Get:2 http://172.17.0.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-3 [135 kB]
Get:3 http://172.17.0.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-8+rpi1 [1944 kB]
Get:4 http://172.17.0.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-8+rpi1 [797 kB]
Get:5 http://172.17.0.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-8+rpi1 [88.1 kB]
Get:6 http://172.17.0.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-8+rpi1 [205 kB]
Get:7 http://172.17.0.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-8+rpi1 [36.1 kB]
Get:8 http://172.17.0.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-8+rpi1 [37.8 kB]
Get:9 http://172.17.0.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-8+rpi1 [8196 B]
Get:10 http://172.17.0.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-8+rpi1 [466 kB]
Get:11 http://172.17.0.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:12 http://172.17.0.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:13 http://172.17.0.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:14 http://172.17.0.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:15 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-minimal armhf 3.9.7-4+rpi1 [794 kB]
Get:16 http://172.17.0.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.1-2 [80.3 kB]
Get:17 http://172.17.0.1/private bookworm-staging/main armhf python3.9-minimal armhf 3.9.7-4+rpi1 [1632 kB]
Get:18 http://172.17.0.1/private bookworm-staging/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB]
Get:19 http://172.17.0.1/private bookworm-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:20 http://172.17.0.1/private bookworm-staging/main armhf mailcap all 3.70 [31.8 kB]
Get:21 http://172.17.0.1/private bookworm-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:22 http://172.17.0.1/private bookworm-staging/main armhf libffi8 armhf 3.4.2-2 [21.2 kB]
Get:23 http://172.17.0.1/private bookworm-staging/main armhf libmpdec3 armhf 2.5.1-2+rpi1 [73.5 kB]
Get:24 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-stdlib armhf 3.9.7-4+rpi1 [1618 kB]
Get:25 http://172.17.0.1/private bookworm-staging/main armhf python3.9 armhf 3.9.7-4+rpi1 [480 kB]
Get:26 http://172.17.0.1/private bookworm-staging/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB]
Get:27 http://172.17.0.1/private bookworm-staging/main armhf python3 armhf 3.9.2-3 [37.9 kB]
Get:28 http://172.17.0.1/private bookworm-staging/main armhf sensible-utils all 0.0.17 [21.5 kB]
Get:29 http://172.17.0.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:30 http://172.17.0.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:31 http://172.17.0.1/private bookworm-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:32 http://172.17.0.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:33 http://172.17.0.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:34 http://172.17.0.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:35 http://172.17.0.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:36 http://172.17.0.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:37 http://172.17.0.1/private bookworm-staging/main armhf automake all 1:1.16.4-2 [819 kB]
Get:38 http://172.17.0.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:39 http://172.17.0.1/private bookworm-staging/main armhf bwa armhf 0.7.17-6 [195 kB]
Get:40 http://172.17.0.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:41 http://172.17.0.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:42 http://172.17.0.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:43 http://172.17.0.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:44 http://172.17.0.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:45 http://172.17.0.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB]
Get:46 http://172.17.0.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB]
Get:47 http://172.17.0.1/private bookworm-staging/main armhf libelf1 armhf 0.185-2 [168 kB]
Get:48 http://172.17.0.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:49 http://172.17.0.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:50 http://172.17.0.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:51 http://172.17.0.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:52 http://172.17.0.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:53 http://172.17.0.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:54 http://172.17.0.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:55 http://172.17.0.1/private bookworm-staging/main armhf python3-lib2to3 all 3.9.7-1 [79.4 kB]
Get:56 http://172.17.0.1/private bookworm-staging/main armhf python3-distutils all 3.9.7-1 [146 kB]
Get:57 http://172.17.0.1/private bookworm-staging/main armhf dh-python all 4.20201102+nmu1 [99.4 kB]
Get:58 http://172.17.0.1/private bookworm-staging/main armhf fonts-lyx all 2.3.6-1 [205 kB]
Get:59 http://172.17.0.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-1 [108 kB]
Get:60 http://172.17.0.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:61 http://172.17.0.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:62 http://172.17.0.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:63 http://172.17.0.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:64 http://172.17.0.1/private bookworm-staging/main armhf libexpat1-dev armhf 2.4.1-2 [135 kB]
Get:65 http://172.17.0.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:66 http://172.17.0.1/private bookworm-staging/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [353 kB]
Get:67 http://172.17.0.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-8+rpi1 [235 kB]
Get:68 http://172.17.0.1/private bookworm-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:69 http://172.17.0.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:70 http://172.17.0.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:71 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB]
Get:72 http://172.17.0.1/private bookworm-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB]
Get:73 http://172.17.0.1/private bookworm-staging/main armhf libjs-underscore all 1.9.1~dfsg-4 [100 kB]
Get:74 http://172.17.0.1/private bookworm-staging/main armhf libjs-sphinxdoc all 4.2.0-4 [137 kB]
Get:75 http://172.17.0.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-1 [1594 kB]
Get:76 http://172.17.0.1/private bookworm-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.6 kB]
Get:77 http://172.17.0.1/private bookworm-staging/main armhf liblcms2-2 armhf 2.12~rc1-2 [121 kB]
Get:78 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9 armhf 3.9.7-4+rpi1 [1416 kB]
Get:79 http://172.17.0.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:80 http://172.17.0.1/private bookworm-staging/main armhf libpython3.9-dev armhf 3.9.7-4+rpi1 [3060 kB]
Get:81 http://172.17.0.1/private bookworm-staging/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB]
Get:82 http://172.17.0.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:83 http://172.17.0.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-2 [272 kB]
Get:84 http://172.17.0.1/private bookworm-staging/main armhf libwebpdemux2 armhf 0.6.1-2.1 [86.8 kB]
Get:85 http://172.17.0.1/private bookworm-staging/main armhf libwebpmux3 armhf 0.6.1-2.1 [94.4 kB]
Get:86 http://172.17.0.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:87 http://172.17.0.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:88 http://172.17.0.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:89 http://172.17.0.1/private bookworm-staging/main armhf ttf-bitstream-vera all 1.10-8.1 [223 kB]
Get:90 http://172.17.0.1/private bookworm-staging/main armhf python-matplotlib-data all 3.3.4-2 [4154 kB]
Get:91 http://172.17.0.1/private bookworm-staging/main armhf python3-six all 1.16.0-2 [17.5 kB]
Get:92 http://172.17.0.1/private bookworm-staging/main armhf python3-cycler all 0.10.0-3 [8084 B]
Get:93 http://172.17.0.1/private bookworm-staging/main armhf python3-dateutil all 2.8.1-6 [79.2 kB]
Get:94 http://172.17.0.1/private bookworm-staging/main armhf python3-decorator all 4.4.2-2 [15.8 kB]
Get:95 http://172.17.0.1/private bookworm-staging/main armhf python3.9-dev armhf 3.9.7-4+rpi1 [501 kB]
Get:96 http://172.17.0.1/private bookworm-staging/main armhf python3-dev armhf 3.9.2-3 [24.8 kB]
Get:97 http://172.17.0.1/private bookworm-staging/main armhf python3-kiwisolver armhf 1.3.1-2 [45.7 kB]
Get:98 http://172.17.0.1/private bookworm-staging/main armhf python3-pyparsing all 2.4.7-1 [109 kB]
Get:99 http://172.17.0.1/private bookworm-staging/main armhf python3-pkg-resources all 52.0.0-4 [190 kB]
Get:100 http://172.17.0.1/private bookworm-staging/main armhf python3-numpy armhf 1:1.19.5-1 [2930 kB]
Get:101 http://172.17.0.1/private bookworm-staging/main armhf python3-pil armhf 8.1.2+dfsg-0.3 [410 kB]
Get:102 http://172.17.0.1/private bookworm-staging/main armhf python3-matplotlib armhf 3.3.4-2 [6035 kB]
Get:103 http://172.17.0.1/private bookworm-staging/main armhf python3-tz all 2021.3-1 [34.9 kB]
Get:104 http://172.17.0.1/private bookworm-staging/main armhf python3-pandas-lib armhf 1.1.5+dfsg-2 [2863 kB]
Get:105 http://172.17.0.1/private bookworm-staging/main armhf python3-pandas all 1.1.5+dfsg-2 [2096 kB]
Get:106 http://172.17.0.1/private bookworm-staging/main armhf python3-patsy all 0.5.2-2 [173 kB]
Get:107 http://172.17.0.1/private bookworm-staging/main armhf python3-pubsub all 4.0.3-4 [46.6 kB]
Get:108 http://172.17.0.1/private bookworm-staging/main armhf python3-scipy armhf 1.6.0-2 [11.1 MB]
Get:109 http://172.17.0.1/private bookworm-staging/main armhf python3-setuptools all 52.0.0-4 [366 kB]
Get:110 http://172.17.0.1/private bookworm-staging/main armhf python3-statsmodels-lib armhf 0.12.2-2+rpi1 [1138 kB]
Get:111 http://172.17.0.1/private bookworm-staging/main armhf python3-statsmodels all 0.12.2-2+rpi1 [4453 kB]
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Setting up media-types (4.0.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up liblcms2-2:armhf (2.12~rc1-2) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
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Setting up bsdextrautils (2.37.2-3) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-7) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up bwa (0.7.17-6) ...
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Setting up libbrotli1:armhf (1.0.9-2+b1) ...
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Setting up file (1:5.39-3) ...
Setting up libgomp1:armhf (11.2.0-8+rpi1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libasan6:armhf (11.2.0-8+rpi1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libblas3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up python-matplotlib-data (3.3.4-2) ...
Setting up libwebpmux3:armhf (0.6.1-2.1) ...
Setting up libbsd0:armhf (0.11.3-1) ...
Setting up mailcap (3.70) ...
Setting up libelf1:armhf (0.185-2) ...
Setting up libxml2:armhf (2.9.12+dfsg-5) ...
Setting up libcc1-0:armhf (11.2.0-8+rpi1) ...
Setting up libpython3.9-stdlib:armhf (3.9.7-4+rpi1) ...
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Setting up libjs-underscore (1.9.1~dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (1.12.0-1) ...
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Setting up liblapack3:armhf (3.10.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libxcb1:armhf (1.14-3) ...
Setting up gettext (0.21-4) ...
Setting up mime-support (3.66) ...
Setting up libtool (2.4.6-15) ...
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Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libpython3.9:armhf (3.9.7-4+rpi1) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-8) ...
Setting up libfreetype6:armhf (2.10.4+dfsg-1) ...
Setting up libjs-sphinxdoc (4.2.0-4) ...
Setting up autoconf (2.71-2) ...
Setting up dh-strip-nondeterminism (1.12.0-1) ...
Setting up dwz (0.14-1) ...
Setting up groff-base (1.22.4-7) ...
Setting up python3.9 (3.9.7-4+rpi1) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-9) ...
Setting up automake (1:1.16.4-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
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Setting up python3 (3.9.2-3) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
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Setting up python3-six (1.16.0-2) ...
Setting up dh-autoreconf (20) ...
Setting up python3-pil:armhf (8.1.2+dfsg-0.3) ...
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Setting up python3-distutils (3.9.7-1) ...
Setting up dh-python (4.20201102+nmu1) ...
Setting up libpython3-dev:armhf (3.9.2-3) ...
Setting up python3-setuptools (52.0.0-4) ...
Setting up debhelper (13.5.2) ...
Setting up python3-dev (3.9.2-3) ...
Setting up python3-numpy (1:1.19.5-1) ...
Setting up python3-statsmodels-lib:armhf (0.12.2-2+rpi1) ...
Setting up python3-matplotlib (3.3.4-2) ...
Setting up python3-scipy (1.6.0-2) ...
Setting up python3-pandas-lib:armhf (1.1.5+dfsg-2) ...
Setting up python3-patsy (0.5.2-2) ...
Setting up python3-pandas (1.1.5+dfsg-2) ...
Setting up python3-statsmodels (0.12.2-2+rpi1) ...
Setting up sbuild-build-depends-tnseq-transit-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-10_10.3.0-9+rpi1 gcc-10_10.3.0-9+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-8+rpi1 linux-libc-dev_5.10.46-4+rpi1
Package versions: adduser_3.118 apt_2.3.9 autoconf_2.71-2 automake_1:1.16.4-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.51 bash_5.1-3 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-3 bsdutils_1:2.37.2-1 build-essential_12.9 bwa_0.7.17-6 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.3.0-9+rpi1 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.77 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-python_4.20201102+nmu1 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 fonts-lyx_2.3.6-1 g++_4:10.2.1-1+rpi1 g++-10_10.3.0-9+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.3.0-9+rpi1 gcc-10-base_10.3.0-9+rpi1 gcc-11-base_11.2.0-8+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.9 libarchive-zip-perl_1.68-1 libasan6_11.2.0-8+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-8+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.5-1 libaudit1_1:3.0.5-1 libbinutils_2.37-5+rpi1 libblas3_3.10.0-1 libblkid1_2.37.2-1 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-4 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_11.2.0-8+rpi1 libcom-err2_1.46.4-1 libcrypt-dev_1:4.4.25-2 libcrypt1_1:4.4.25-2 libctf-nobfd0_2.37-5+rpi1 libctf0_2.37-5+rpi1 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.260 libdebhelper-perl_13.5.2 libdeflate0_1.8-1 libdpkg-perl_1.20.9+rpi1 libelf1_0.185-2 libexpat1_2.4.1-2 libexpat1-dev_2.4.1-2 libext2fs2_1.46.4-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libffi8_3.4.2-2 libfile-stripnondeterminism-perl_1.12.0-1 libfreetype6_2.10.4+dfsg-1 libgcc-10-dev_10.3.0-9+rpi1 libgcc-s1_11.2.0-8+rpi1 libgcrypt20_1.9.4-3 libgdbm-compat4_1.21-1 libgdbm6_1.21-1 libgfortran5_11.2.0-8+rpi1 libgmp10_2:6.2.1+dfsg-2 libgnutls30_3.7.2-2 libgomp1_11.2.0-8+rpi1 libgpg-error0_1.42-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libimagequant0_2.12.2-1.1 libisl23_0.23-1 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:2.0.6-4 libjs-jquery_3.5.1+dfsg+~3.5.5-7 libjs-jquery-ui_1.12.1+dfsg-8 libjs-sphinxdoc_4.2.0-4 libjs-underscore_1.9.1~dfsg-4 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 libksba8_1.6.0-2 liblapack3_3.10.0-1 liblbfgsb0_3.0+dfsg.3-9 liblcms2-2_2.12~rc1-2 libldap-2.4-2_2.4.59+dfsg-1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmd0_1.0.4-1 libmount1_2.37.2-1 libmpc3_1.2.0-1 libmpdec3_2.5.1-2+rpi1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-4 libnettle8_3.7.3-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-5 libpipeline1_1.5.3-1 libpng16-16_1.6.37-3 libpython3-dev_3.9.2-3 libpython3-stdlib_3.9.2-3 libpython3.9_3.9.7-4+rpi1 libpython3.9-dev_3.9.7-4+rpi1 libpython3.9-minimal_3.9.7-4+rpi1 libpython3.9-stdlib_3.9.7-4+rpi1 libreadline8_8.1-2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-1 libsqlite3-0_3.36.0-2 libss2_1.46.4-1 libssl1.1_1.1.1l-1 libstdc++-10-dev_10.3.0-9+rpi1 libstdc++6_11.2.0-8+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.9-1+rpi1 libtasn1-6_4.17.0-2 libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libtiff5_4.3.0-2 libtinfo6_6.2+20201114-4 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libubsan1_11.2.0-8+rpi1 libuchardet0_0.0.7-1 libudev1_247.9-1+rpi1 libunistring2_0.9.10-6 libuuid1_2.37.2-1 libwebp6_0.6.1-2.1 libwebpdemux2_0.6.1-2.1 libwebpmux3_0.6.1-2.1 libxau6_1:1.0.9-1 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxml2_2.9.12+dfsg-5 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1+rpi1 linux-libc-dev_5.10.46-4+rpi1 login_1:4.8.1-1 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 mailcap_3.70 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mime-support_3.66 mount_2.37.2-1 ncurses-base_6.2+20201114-4 ncurses-bin_6.2+20201114-4 netbase_6.3 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-5 perl-base_5.32.1-5 perl-modules-5.32_5.32.1-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 python-matplotlib-data_3.3.4-2 python3_3.9.2-3 python3-cycler_0.10.0-3 python3-dateutil_2.8.1-6 python3-decorator_4.4.2-2 python3-dev_3.9.2-3 python3-distutils_3.9.7-1 python3-kiwisolver_1.3.1-2 python3-lib2to3_3.9.7-1 python3-matplotlib_3.3.4-2 python3-minimal_3.9.2-3 python3-numpy_1:1.19.5-1 python3-pandas_1.1.5+dfsg-2 python3-pandas-lib_1.1.5+dfsg-2 python3-patsy_0.5.2-2 python3-pil_8.1.2+dfsg-0.3 python3-pkg-resources_52.0.0-4 python3-pubsub_4.0.3-4 python3-pyparsing_2.4.7-1 python3-scipy_1.6.0-2 python3-setuptools_52.0.0-4 python3-six_1.16.0-2 python3-statsmodels_0.12.2-2+rpi1 python3-statsmodels-lib_0.12.2-2+rpi1 python3-tz_2021.3-1 python3.9_3.9.7-4+rpi1 python3.9-dev_3.9.7-4+rpi1 python3.9-minimal_3.9.7-4+rpi1 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tnseq-transit-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 ttf-bitstream-vera_1.10-8.1 tzdata_2021a-1 util-linux_2.37.2-1 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.iqczZomf/trustedkeys.kbx': General error
gpgv: Signature made Tue Oct 12 14:30:26 2021 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./tnseq-transit_3.2.2-1.dsc
dpkg-source: info: extracting tnseq-transit in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tnseq-transit_3.2.2.orig.tar.gz
dpkg-source: info: unpacking tnseq-transit_3.2.2-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip_test_requiring_non_existing_input_data.patch
dpkg-source: info: applying fix_problematic_comparison.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-bc7e2ff5-f54e-4d70-a317-08dda081fd1c
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package tnseq-transit
dpkg-buildpackage: info: source version 3.2.2-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
I: pybuild base:232: python3.9 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.9' does not exist -- can't clean it
rm -rf tests_invalid_data
rm -rf tnseq_transit.egg-info
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p tests_invalid_data
mv tests/H37Rv.fna tests_invalid_data
dh_auto_configure
I: pybuild base:232: python3.9 setup.py config 
running config
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp
copying src/pytpp/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp
copying src/pytpp/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp
copying src/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp
copying src/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/images.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
copying src/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/anova.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/corrplot.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/gi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/heatmap.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/norm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/normalize.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/pathway_enrichment.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/tnseq_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/utest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
copying src/pytransit/analysis/zinb.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert
copying src/pytransit/convert/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert
copying src/pytransit/convert/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert
copying src/pytransit/convert/gff_to_prot_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/combined_wig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/igv.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/mean_counts.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
copying src/pytransit/export/prot_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export
running egg_info
creating tnseq_transit.egg-info
writing tnseq_transit.egg-info/PKG-INFO
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing requirements to tnseq_transit.egg-info/requires.txt
writing top-level names to tnseq_transit.egg-info/top_level.txt
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'VERSION'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/COG_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/GO_associated_Rvs.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/GO_term_names.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/H37Rv_COG_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/H37Rv_GO_terms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/H37Rv_sanger_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/README.md -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/cholesterol_glycerol_combined.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/gene_ontology.1_2.3-11-18.obo -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg_covar.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg_interactions.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/sanger_roles.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
copying src/pytransit/data/smeg_GO_terms.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes
   debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test -- --system=custom --test-args="PYTHONPATH=tests {interpreter} -m unittest -v tests/*.py"
I: pybuild base:232: PYTHONPATH=tests python3.9 -m unittest -v tests/*.py
test_Binomial (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1214: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:518: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
  for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback


####################
tests.test_analysis_methods.TestMethods.test_Binomial
####################
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[binomial] Running Binomial Method...  15.1%   
[binomial] Running Binomial Method...  15.2%   
[binomial] Running Binomial Method...  15.3%   
[binomial] Running Binomial Method...  15.4%   
[binomial] Running Binomial Method...  15.5%   
[binomial] Running Binomial Method...  15.5%   
[binomial] Running Binomial Method...  15.6%   
[binomial] Running Binomial Method...  15.7%   
[binomial] Running Binomial Method...  15.8%   
[binomial] Running Binomial Method...  15.9%   
[binomial] Running Binomial Method...  16.0%   
[binomial] Running Binomial Method...  16.1%   
[binomial] Running Binomial Method...  16.2%   
[binomial] Running Binomial Method...  16.3%   
[binomial] Running Binomial Method...  16.4%   
[binomial] Running Binomial Method...  16.5%   
[binomial] Running Binomial Method...  16.5%   
[binomial] Running Binomial Method...  16.6%   
[binomial] Running Binomial Method...  16.7%   
[binomial] Running Binomial Method...  16.8%   
[binomial] Running Binomial Method...  16.9%   
[binomial] Running Binomial Method...  17.0%   
[binomial] Running Binomial Method...  17.1%   
[binomial] Running Binomial Method...  17.2%   
[binomial] Running Binomial Method...  17.3%   
[binomial] Running Binomial Method...  17.4%   
[binomial] Running Binomial Method...  17.5%   
[binomial] Running Binomial Method...  17.5%   
[binomial] Running Binomial Method...  17.6%   
[binomial] Running Binomial Method...  17.7%   
[binomial] Running Binomial Method...  17.8%   
[binomial] Running Binomial Method...  17.9%   
[binomial] Running Binomial Method...  18.0%   
[binomial] Running Binomial Method...  18.1%   
[binomial] Running Binomial Method...  18.2%   
[binomial] Running Binomial Method...  18.3%   
[binomial] Running Binomial Method...  18.4%   
[binomial] Running Binomial Method...  18.5%   
[binomial] Running Binomial Method...  18.5%   
[binomial] Running Binomial Method...  18.6%   
[binomial] Running Binomial Method...  18.7%   
[binomial] Running Binomial Method...  18.8%   
[binomial] Running Binomial Method...  18.9%   
[binomial] Running Binomial Method...  19.0%   
[binomial] Running Binomial Method...  19.1%   
[binomial] Running Binomial Method...  19.2%   
[binomial] Running Binomial Method...  19.3%   
[binomial] Running Binomial Method...  19.4%   
[binomial] Running Binomial Method...  19.5%   
[binomial] Running Binomial Method...  19.5%   
[binomial] Running Binomial Method...  19.6%   
[binomial] Running Binomial Method...  19.7%   
[binomial] Running Binomial Method...  19.8%   
[binomial] Running Binomial Method...  19.9%   
[binomial] Running Binomial Method...  20.0%   
[binomial] Running Binomial Method...  20.1%   
[binomial] Running Binomial Method...  20.2%   
[binomial] Running Binomial Method...  20.3%   
[binomial] Running Binomial Method...  20.4%   
[binomial] Running Binomial Method...  20.5%   
[binomial] Running Binomial Method...  20.5%   
[binomial] Running Binomial Method...  20.6%   
[binomial] Running Binomial Method...  20.7%   
[binomial] Running Binomial Method...  20.8%   
[binomial] Running Binomial Method...  20.9%   
[binomial] Running Binomial Method...  21.0%   
[binomial] Running Binomial Method...  21.1%   
[binomial] Running Binomial Method...  21.2%   
[binomial] Running Binomial Method...  21.3%   
[binomial] Running Binomial Method...  21.4%   
[binomial] Running Binomial Method...  21.5%   
[binomial] Running Binomial Method...  21.5%   
[binomial] Running Binomial Method...  21.6%   
[binomial] Running Binomial Method...  21.7%   
[binomial] Running Binomial Method...  21.8%   
[binomial] Running Binomial Method...  21.9%   
[binomial] Running Binomial Method...  22.0%   
[binomial] Running Binomial Method...  22.1%   
[binomial] Running Binomial Method...  22.2%   
[binomial] Running Binomial Method...  22.3%   
[binomial] Running Binomial Method...  22.4%   
[binomial] Running Binomial Method...  22.5%   
[binomial] Running Binomial Method...  22.5%   
[binomial] Running Binomial Method...  22.6%   
[binomial] Running Binomial Method...  22.7%   
[binomial] Running Binomial Method...  22.8%   
[binomial] Running Binomial Method...  22.9%   
[binomial] Running Binomial Method...  23.0%   
[binomial] Running Binomial Method...  23.1%   
[binomial] Running Binomial Method...  23.2%   
[binomial] Running Binomial Method...  23.3%   
[binomial] Running Binomial Method...  23.4%   
[binomial] Running Binomial Method...  23.5%   
[binomial] Running Binomial Method...  23.5%   
[binomial] Running Binomial Method...  23.6%   
[binomial] Running Binomial Method...  23.7%   
[binomial] Running Binomial Method...  23.8%   
[binomial] Running Binomial Method...  23.9%   
[binomial] Running Binomial Method...  24.0%   
[binomial] Running Binomial Method...  24.1%   
[binomial] Running Binomial Method...  24.2%   
[binomial] Running Binomial Method...  24.3%   
[binomial] Running Binomial Method...  24.4%   
[binomial] Running Binomial Method...  24.5%   
[binomial] Running Binomial Method...  24.5%   
[binomial] Running Binomial Method...  24.6%   
[binomial] Running Binomial Method...  24.7%   
[binomial] Running Binomial Method...  24.8%   
[binomial] Running Binomial Method...  24.9%   
[binomial] Running Binomial Method...  25.0%   
[binomial] Running Binomial Method...  25.1%   
[binomial] Running Binomial Method...  25.2%   
[binomial] Running Binomial Method...  25.3%   
[binomial] Running Binomial Method...  25.4%   
[binomial] Running Binomial Method...  25.5%   
[binomial] Running Binomial Method...  25.5%   
[binomial] Running Binomial Method...  25.6%   
[binomial] Running Binomial Method...  25.7%   
[binomial] Running Binomial Method...  25.8%   
[binomial] Running Binomial Method...  25.9%   
[binomial] Running Binomial Method...  26.0%   
[binomial] Running Binomial Method...  26.1%   
[binomial] Running Binomial Method...  26.2%   
[binomial] Running Binomial Method...  26.3%   
[binomial] Running Binomial Method...  26.4%   
[binomial] Running Binomial Method...  26.5%   
[binomial] Running Binomial Method...  26.5%   
[binomial] Running Binomial Method...  26.6%   
[binomial] Running Binomial Method...  26.7%   
[binomial] Running Binomial Method...  26.8%   
[binomial] Running Binomial Method...  26.9%   
[binomial] Running Binomial Method...  27.0%   
[binomial] Running Binomial Method...  27.1%   
[binomial] Running Binomial Method...  27.2%   
[binomial] Running Binomial Method...  27.3%   
[binomial] Running Binomial Method...  27.4%   
[binomial] Running Binomial Method...  27.5%   
[binomial] Running Binomial Method...  27.5%   
[binomial] Running Binomial Method...  27.6%   
[binomial] Running Binomial Method...  27.7%   
[binomial] Running Binomial Method...  27.8%   
[binomial] Running Binomial Method...  27.9%   
[binomial] Running Binomial Method...  28.0%   
[binomial] Running Binomial Method...  28.1%   
[binomial] Running Binomial Method...  28.2%   
[binomial] Running Binomial Method...  28.3%   
[binomial] Running Binomial Method...  28.4%   
[binomial] Running Binomial Method...  28.5%   
[binomial] Running Binomial Method...  28.5%   
[binomial] Running Binomial Method...  28.6%   
[binomial] Running Binomial Method...  28.7%   
[binomial] Running Binomial Method...  28.8%   
[binomial] Running Binomial Method...  28.9%   
[binomial] Running Binomial Method...  29.0%   
[binomial] Running Binomial Method...  29.1%   
[binomial] Running Binomial Method...  29.2%   
[binomial] Running Binomial Method...  29.3%   
[binomial] Running Binomial Method...  29.4%   
[binomial] Running Binomial Method...  29.5%   
[binomial] Running Binomial Method...  29.5%   
[binomial] Running Binomial Method...  29.6%   
[binomial] Running Binomial Method...  29.7%   
[binomial] Running Binomial Method...  29.8%   
[binomial] Running Binomial Method...  29.9%   
[binomial] Running Binomial Method...  30.0%   
[binomial] Running Binomial Method...  30.1%   
[binomial] Running Binomial Method...  30.2%   
[binomial] Running Binomial Method...  30.3%   
[binomial] Running Binomial Method...  30.4%   
[binomial] Running Binomial Method...  30.5%   
[binomial] Running Binomial Method...  30.5%   
[binomial] Running Binomial Method...  30.6%   
[binomial] Running Binomial Method...  30.7%   
[binomial] Running Binomial Method...  30.8%   
[binomial] Running Binomial Method...  30.9%   
[binomial] Running Binomial Method...  31.0%   
[binomial] Running Binomial Method...  31.1%   
[binomial] Running Binomial Method...  31.2%   
[binomial] Running Binomial Method...  31.3%   
[binomial] Running Binomial Method...  31.4%   
[binomial] Running Binomial Method...  31.5%   
[binomial] Running Binomial Method...  31.5%   
[binomial] Running Binomial Method...  31.6%   
[binomial] Running Binomial Method...  31.7%   
[binomial] Running Binomial Method...  31.8%   
[binomial] Running Binomial Method...  31.9%   
[binomial] Running Binomial Method...  32.0%   
[binomial] Running Binomial Method...  32.1%   
[binomial] Running Binomial Method...  32.2%   
[binomial] Running Binomial Method...  32.3%   
[binomial] Running Binomial Method...  32.4%   
[binomial] Running Binomial Method...  32.5%   
[binomial] Running Binomial Method...  32.5%   
[binomial] Running Binomial Method...  32.6%   
[binomial] Running Binomial Method...  32.7%   
[binomial] Running Binomial Method...  32.8%   
[binomial] Running Binomial Method...  32.9%   
[binomial] Running Binomial Method...  33.0%   
[binomial] Running Binomial Method...  33.1%   
[binomial] Running Binomial Method...  33.2%   
[binomial] Running Binomial Method...  33.3%   
[binomial] Running Binomial Method...  33.4%   
[binomial] Running Binomial Method...  33.5%   
[binomial] Running Binomial Method...  33.5%   
[binomial] Running Binomial Method...  33.6%   
[binomial] Running Binomial Method...  33.7%   
[binomial] Running Binomial Method...  33.8%   
[binomial] Running Binomial Method...  33.9%   
[binomial] Running Binomial Method...  34.0%   
[binomial] Running Binomial Method...  34.1%   
[binomial] Running Binomial Method...  34.2%   
[binomial] Running Binomial Method...  34.3%   
[binomial] Running Binomial Method...  34.4%   
[binomial] Running Binomial Method...  34.5%   
[binomial] Running Binomial Method...  34.5%   
[binomial] Running Binomial Method...  34.6%   
[binomial] Running Binomial Method...  34.7%   
[binomial] Running Binomial Method...  34.8%   
[binomial] Running Binomial Method...  34.9%   
[binomial] Running Binomial Method...  35.0%   
[binomial] Running Binomial Method...  35.1%   
[binomial] Running Binomial Method...  35.2%   
[binomial] Running Binomial Method...  35.3%   
[binomial] Running Binomial Method...  35.4%   
[binomial] Running Binomial Method...  35.5%   
[binomial] Running Binomial Method...  35.5%   
[binomial] Running Binomial Method...  35.6%   
[binomial] Running Binomial Method...  35.7%   
[binomial] Running Binomial Method...  35.8%   
[binomial] Running Binomial Method...  35.9%   
[binomial] Running Binomial Method...  36.0%   
[binomial] Running Binomial Method...  36.1%   
[binomial] Running Binomial Method...  36.2%   
[binomial] Running Binomial Method...  36.3%   
[binomial] Running Binomial Method...  36.4%   
[binomial] Running Binomial Method...  36.5%   
[binomial] Running Binomial Method...  36.5%   
[binomial] Running Binomial Method...  36.6%   
[binomial] Running Binomial Method...  36.7%   
[binomial] Running Binomial Method...  36.8%   
[binomial] Running Binomial Method...  36.9%   
[binomial] Running Binomial Method...  37.0%   
[binomial] Running Binomial Method...  37.1%   
[binomial] Running Binomial Method...  37.2%   
[binomial] Running Binomial Method...  37.3%   
[binomial] Running Binomial Method...  37.4%   
[binomial] Running Binomial Method...  37.5%   
[binomial] Running Binomial Method...  37.5%   
[binomial] Running Binomial Method...  37.6%   
[binomial] Running Binomial Method...  37.7%   
[binomial] Running Binomial Method...  37.8%   
[binomial] Running Binomial Method...  37.9%   
[binomial] Running Binomial Method...  38.0%   
[binomial] Running Binomial Method...  38.1%   
[binomial] Running Binomial Method...  38.2%   
[binomial] Running Binomial Method...  38.3%   
[binomial] Running Binomial Method...  38.4%   
[binomial] Running Binomial Method...  38.5%   
[binomial] Running Binomial Method...  38.5%   
[binomial] Running Binomial Method...  38.6%   
[binomial] Running Binomial Method...  38.7%   
[binomial] Running Binomial Method...  38.8%   
[binomial] Running Binomial Method...  38.9%   
[binomial] Running Binomial Method...  39.0%   
[binomial] Running Binomial Method...  39.1%   
[binomial] Running Binomial Method...  39.2%   
[binomial] Running Binomial Method...  39.3%   
[binomial] Running Binomial Method...  39.4%   
[binomial] Running Binomial Method...  39.5%   
[binomial] Running Binomial Method...  39.5%   
[binomial] Running Binomial Method...  39.6%   
[binomial] Running Binomial Method...  39.7%   
[binomial] Running Binomial Method...  39.8%   
[binomial] Running Binomial Method...  39.9%   
[binomial] Running Binomial Method...  40.0%   
[binomial] Running Binomial Method...  40.1%   
[binomial] Running Binomial Method...  40.2%   
[binomial] Running Binomial Method...  40.3%   
[binomial] Running Binomial Method...  40.4%   
[binomial] Running Binomial Method...  40.5%   
[binomial] Running Binomial Method...  40.5%   
[binomial] Running Binomial Method...  40.6%   
[binomial] Running Binomial Method...  40.7%   
[binomial] Running Binomial Method...  40.8%   
[binomial] Running Binomial Method...  40.9%   
[binomial] Running Binomial Method...  41.0%   
[binomial] Running Binomial Method...  41.1%   
[binomial] Running Binomial Method...  41.2%   
[binomial] Running Binomial Method...  41.3%   
[binomial] Running Binomial Method...  41.4%   
[binomial] Running Binomial Method...  41.5%   
[binomial] Running Binomial Method...  41.5%   
[binomial] Running Binomial Method...  41.6%   
[binomial] Running Binomial Method...  41.7%   
[binomial] Running Binomial Method...  41.8%   
[binomial] Running Binomial Method...  41.9%   
[binomial] Running Binomial Method...  42.0%   
[binomial] Running Binomial Method...  42.1%   
[binomial] Running Binomial Method...  42.2%   
[binomial] Running Binomial Method...  42.3%   
[binomial] Running Binomial Method...  42.4%   
[binomial] Running Binomial Method...  42.5%   
[binomial] Running Binomial Method...  42.5%   
[binomial] Running Binomial Method...  42.6%   
[binomial] Running Binomial Method...  42.7%   
[binomial] Running Binomial Method...  42.8%   
[binomial] Running Binomial Method...  42.9%   
[binomial] Running Binomial Method...  43.0%   
[binomial] Running Binomial Method...  43.1%   
[binomial] Running Binomial Method...  43.2%   
[binomial] Running Binomial Method...  43.3%   
[binomial] Running Binomial Method...  43.4%   
[binomial] Running Binomial Method...  43.5%   
[binomial] Running Binomial Method...  43.5%   
[binomial] Running Binomial Method...  43.6%   
[binomial] Running Binomial Method...  43.7%   
[binomial] Running Binomial Method...  43.8%   
[binomial] Running Binomial Method...  43.9%   
[binomial] Running Binomial Method...  44.0%   
[binomial] Running Binomial Method...  44.1%   
[binomial] Running Binomial Method...  44.2%   
[binomial] Running Binomial Method...  44.3%   
[binomial] Running Binomial Method...  44.4%   
[binomial] Running Binomial Method...  44.5%   
[binomial] Running Binomial Method...  44.5%   
[binomial] Running Binomial Method...  44.6%   
[binomial] Running Binomial Method...  44.7%   
[binomial] Running Binomial Method...  44.8%   
[binomial] Running Binomial Method...  44.9%   
[binomial] Running Binomial Method...  45.0%   
[binomial] Running Binomial Method...  45.1%   
[binomial] Running Binomial Method...  45.2%   
[binomial] Running Binomial Method...  45.3%   
[binomial] Running Binomial Method...  45.4%   
[binomial] Running Binomial Method...  45.5%   
[binomial] Running Binomial Method...  45.5%   
[binomial] Running Binomial Method...  45.6%   
[binomial] Running Binomial Method...  45.7%   
[binomial] Running Binomial Method...  45.8%   
[binomial] Running Binomial Method...  45.9%   
[binomial] Running Binomial Method...  46.0%   
[binomial] Running Binomial Method...  46.1%   
[binomial] Running Binomial Method...  46.2%   
[binomial] Running Binomial Method...  46.3%   
[binomial] Running Binomial Method...  46.4%   
[binomial] Running Binomial Method...  46.5%   
[binomial] Running Binomial Method...  46.5%   
[binomial] Running Binomial Method...  46.6%   
[binomial] Running Binomial Method...  46.7%   
[binomial] Running Binomial Method...  46.8%   
[binomial] Running Binomial Method...  46.9%   
[binomial] Running Binomial Method...  47.0%   
[binomial] Running Binomial Method...  47.1%   
[binomial] Running Binomial Method...  47.2%   
[binomial] Running Binomial Method...  47.3%   
[binomial] Running Binomial Method...  47.4%   
[binomial] Running Binomial Method...  47.5%   
[binomial] Running Binomial Method...  47.5%   
[binomial] Running Binomial Method...  47.6%   
[binomial] Running Binomial Method...  47.7%   
[binomial] Running Binomial Method...  47.8%   
[binomial] Running Binomial Method...  47.9%   
[binomial] Running Binomial Method...  48.0%   
[binomial] Running Binomial Method...  48.1%   
[binomial] Running Binomial Method...  48.2%   
[binomial] Running Binomial Method...  48.3%   
[binomial] Running Binomial Method...  48.4%   
[binomial] Running Binomial Method...  48.5%   
[binomial] Running Binomial Method...  48.5%   
[binomial] Running Binomial Method...  48.6%   
[binomial] Running Binomial Method...  48.7%   
[binomial] Running Binomial Method...  48.8%   
[binomial] Running Binomial Method...  48.9%   
[binomial] Running Binomial Method...  49.0%   
[binomial] Running Binomial Method...  49.1%   
[binomial] Running Binomial Method...  49.2%   
[binomial] Running Binomial Method...  49.3%   
[binomial] Running Binomial Method...  49.4%   
[binomial] Running Binomial Method...  49.5%   
[binomial] Running Binomial Method...  49.5%   
[binomial] Running Binomial Method...  49.6%   
[binomial] Running Binomial Method...  49.7%   
[binomial] Running Binomial Method...  49.8%   
[binomial] Running Binomial Method...  49.9%   
[binomial] Running Binomial Method...  50.0%   
[binomial] Running Binomial Method...  50.1%   
[binomial] Running Binomial Method...  50.2%   
[binomial] Running Binomial Method...  50.3%   
[binomial] Running Binomial Method...  50.4%   
[binomial] Running Binomial Method...  50.5%   
[binomial] Running Binomial Method...  50.5%   
[binomial] Running Binomial Method...  50.6%   
[binomial] Running Binomial Method...  50.7%   
[binomial] Running Binomial Method...  50.8%   
[binomial] Running Binomial Method...  50.9%   
[binomial] Running Binomial Method...  51.0%   
[binomial] Running Binomial Method...  51.1%   
[binomial] Running Binomial Method...  51.2%   
[binomial] Running Binomial Method...  51.3%   
[binomial] Running Binomial Method...  51.4%   
[binomial] Running Binomial Method...  51.5%   
[binomial] Running Binomial Method...  51.5%   
[binomial] Running Binomial Method...  51.6%   
[binomial] Running Binomial Method...  51.7%   
[binomial] Running Binomial Method...  51.8%   
[binomial] Running Binomial Method...  51.9%   
[binomial] Running Binomial Method...  52.0%   
[binomial] Running Binomial Method...  52.1%   
[binomial] Running Binomial Method...  52.2%   
[binomial] Running Binomial Method...  52.3%   
[binomial] Running Binomial Method...  52.4%   
[binomial] Running Binomial Method...  52.5%   
[binomial] Running Binomial Method...  52.5%   
[binomial] Running Binomial Method...  52.6%   
[binomial] Running Binomial Method...  52.7%   
[binomial] Running Binomial Method...  52.8%   
[binomial] Running Binomial Method...  52.9%   
[binomial] Running Binomial Method...  53.0%   
[binomial] Running Binomial Method...  53.1%   
[binomial] Running Binomial Method...  53.2%   
[binomial] Running Binomial Method...  53.3%   
[binomial] Running Binomial Method...  53.4%   
[binomial] Running Binomial Method...  53.5%   
[binomial] Running Binomial Method...  53.5%   
[binomial] Running Binomial Method...  53.6%   
[binomial] Running Binomial Method...  53.7%   
[binomial] Running Binomial Method...  53.8%   
[binomial] Running Binomial Method...  53.9%   
[binomial] Running Binomial Method...  54.0%   
[binomial] Running Binomial Method...  54.1%   
[binomial] Running Binomial Method...  54.2%   
[binomial] Running Binomial Method...  54.3%   
[binomial] Running Binomial Method...  54.4%   
[binomial] Running Binomial Method...  54.5%   
[binomial] Running Binomial Method...  54.5%   
[binomial] Running Binomial Method...  54.6%   
[binomial] Running Binomial Method...  54.7%   
[binomial] Running Binomial Method...  54.8%   
[binomial] Running Binomial Method...  54.9%   
[binomial] Running Binomial Method...  55.0%   
[binomial] Running Binomial Method...  55.1%   
[binomial] Running Binomial Method...  55.2%   
[binomial] Running Binomial Method...  55.3%   
[binomial] Running Binomial Method...  55.4%   
[binomial] Running Binomial Method...  55.5%   
[binomial] Running Binomial Method...  55.5%   
[binomial] Running Binomial Method...  55.6%   
[binomial] Running Binomial Method...  55.7%   
[binomial] Running Binomial Method...  55.8%   
[binomial] Running Binomial Method...  55.9%   
[binomial] Running Binomial Method...  56.0%   
[binomial] Running Binomial Method...  56.1%   
[binomial] Running Binomial Method...  56.2%   
[binomial] Running Binomial Method...  56.3%   
[binomial] Running Binomial Method...  56.4%   
[binomial] Running Binomial Method...  56.5%   
[binomial] Running Binomial Method...  56.5%   
[binomial] Running Binomial Method...  56.6%   
[binomial] Running Binomial Method...  56.7%   
[binomial] Running Binomial Method...  56.8%   
[binomial] Running Binomial Method...  56.9%   
[binomial] Running Binomial Method...  57.0%   
[binomial] Running Binomial Method...  57.1%   
[binomial] Running Binomial Method...  57.2%   
[binomial] Running Binomial Method...  57.3%   
[binomial] Running Binomial Method...  57.4%   
[binomial] Running Binomial Method...  57.5%   
[binomial] Running Binomial Method...  57.5%   
[binomial] Running Binomial Method...  57.6%   
[binomial] Running Binomial Method...  57.7%   
[binomial] Running Binomial Method...  57.8%   
[binomial] Running Binomial Method...  57.9%   
[binomial] Running Binomial Method...  58.0%   
[binomial] Running Binomial Method...  58.1%   
[binomial] Running Binomial Method...  58.2%   
[binomial] Running Binomial Method...  58.3%   
[binomial] Running Binomial Method...  58.4%   
[binomial] Running Binomial Method...  58.5%   
[binomial] Running Binomial Method...  58.5%   
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ok
test_GI (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[binomial] 
[binomial] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[binomial] Finished Binomial Method
Removing output file...


####################
tests.test_analysis_methods.TestMethods.test_GI
####################
[gi] Starting Genetic Interactions Method
[gi] Getting Data
[gi] Normalizing using: TTR
[gi] Running GI Method...  2%   
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[gi] Running GI Method... 100%   
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/usr/lib/python3.9/unittest/case.py:550: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='w' encoding='UTF-8'>
  method()
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_Griffin (tests.test_analysis_methods.TestMethods) ... [gi] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[gi] Finished Genetic Interactions Method
Removing output file...


####################
tests.test_analysis_methods.TestMethods.test_Griffin
####################
[griffin] Starting Griffin Method
[griffin] Getting Data
[griffin] Running Griffin Method...   2.0%   
[griffin] Running Griffin Method...   3.9%   
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ok
test_Gumbel (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/analysis/gumbel.py:498: DeprecationWarning: scipy.exp is deprecated and will be removed in SciPy 2.0.0, use numpy.exp instead
  pval = 1 - scipy.exp(scipy.stats.gumbel_r.logcdf(r,u,B))
/<<PKGBUILDDIR>>/tests/../src/pytransit/analysis/gumbel.py:522: DeprecationWarning: scipy.exp is deprecated and will be removed in SciPy 2.0.0, use numpy.exp instead
  h0 = ((scipy.exp(scipy.stats.gumbel_r.logpdf(R,mu,sigma))) * scipy.stats.norm.pdf(S, mu_s*R, sigma_s)  * (1-w1))
[griffin] 
[griffin] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[griffin] Finished Griffin Method
Removing output file...


####################
tests.test_analysis_methods.TestMethods.test_Gumbel
####################
[gumbel] Reading Annotation
[gumbel] Getting Data
[gumbel] Doing Regression
[gumbel] Setting Initial Class
[gumbel] Running Gumbel Method...   0.2%   
[gumbel] Running Gumbel Method...   0.3%   
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[gumbel] Running Gumbel Method...  23.7%   
[gumbel] Running Gumbel Method...  23.8%   
[gumbel] Running Gumbel Method...  23.9%   
[gumbel] Running Gumbel Method...  24.0%   
[gumbel] Running Gumbel Method...  24.1%   
[gumbel] Running Gumbel Method...  24.2%   
[gumbel] Running Gumbel Method...  24.3%   
[gumbel] Running Gumbel Method...  24.4%   
[gumbel] Running Gumbel Method...  24.5%   
[gumbel] Running Gumbel Method...  24.5%   
[gumbel] Running Gumbel Method...  24.6%   
[gumbel] Running Gumbel Method...  24.7%   
[gumbel] Running Gumbel Method...  24.8%   
[gumbel] Running Gumbel Method...  24.9%   
[gumbel] Running Gumbel Method...  25.0%   
[gumbel] Running Gumbel Method...  25.1%   
[gumbel] Running Gumbel Method...  25.2%   
[gumbel] Running Gumbel Method...  25.3%   
[gumbel] Running Gumbel Method...  25.4%   
[gumbel] Running Gumbel Method...  25.5%   
[gumbel] Running Gumbel Method...  25.5%   
[gumbel] Running Gumbel Method...  25.6%   
[gumbel] Running Gumbel Method...  25.7%   
[gumbel] Running Gumbel Method...  25.8%   
[gumbel] Running Gumbel Method...  25.9%   
[gumbel] Running Gumbel Method...  26.0%   
[gumbel] Running Gumbel Method...  26.1%   
[gumbel] Running Gumbel Method...  26.2%   
[gumbel] Running Gumbel Method...  26.3%   
[gumbel] Running Gumbel Method...  26.4%   
[gumbel] Running Gumbel Method...  26.5%   
[gumbel] Running Gumbel Method...  26.5%   
[gumbel] Running Gumbel Method...  26.6%   
[gumbel] Running Gumbel Method...  26.7%   
[gumbel] Running Gumbel Method...  26.8%   
[gumbel] Running Gumbel Method...  26.9%   
[gumbel] Running Gumbel Method...  27.0%   
[gumbel] Running Gumbel Method...  27.1%   
[gumbel] Running Gumbel Method...  27.2%   
[gumbel] Running Gumbel Method...  27.3%   
[gumbel] Running Gumbel Method...  27.4%   
[gumbel] Running Gumbel Method...  27.5%   
[gumbel] Running Gumbel Method...  27.5%   
[gumbel] Running Gumbel Method...  27.6%   
[gumbel] Running Gumbel Method...  27.7%   
[gumbel] Running Gumbel Method...  27.8%   
[gumbel] Running Gumbel Method...  27.9%   
[gumbel] Running Gumbel Method...  28.0%   
[gumbel] Running Gumbel Method...  28.1%   
[gumbel] Running Gumbel Method...  28.2%   
[gumbel] Running Gumbel Method...  28.3%   
[gumbel] Running Gumbel Method...  28.4%   
[gumbel] Running Gumbel Method...  28.5%   
[gumbel] Running Gumbel Method...  28.5%   
[gumbel] Running Gumbel Method...  28.6%   
[gumbel] Running Gumbel Method...  28.7%   
[gumbel] Running Gumbel Method...  28.8%   
[gumbel] Running Gumbel Method...  28.9%   
[gumbel] Running Gumbel Method...  29.0%   
[gumbel] Running Gumbel Method...  29.1%   
[gumbel] Running Gumbel Method...  29.2%   
[gumbel] Running Gumbel Method...  29.3%   
[gumbel] Running Gumbel Method...  29.4%   
[gumbel] Running Gumbel Method...  29.5%   
[gumbel] Running Gumbel Method...  29.5%   
[gumbel] Running Gumbel Method...  29.6%   
[gumbel] Running Gumbel Method...  29.7%   
[gumbel] Running Gumbel Method...  29.8%   
[gumbel] Running Gumbel Method...  29.9%   
[gumbel] Running Gumbel Method...  30.0%   
[gumbel] Running Gumbel Method...  30.1%   
[gumbel] Running Gumbel Method...  30.2%   
[gumbel] Running Gumbel Method...  30.3%   
[gumbel] Running Gumbel Method...  30.4%   
[gumbel] Running Gumbel Method...  30.5%   
[gumbel] Running Gumbel Method...  30.5%   
[gumbel] Running Gumbel Method...  30.6%   
[gumbel] Running Gumbel Method...  30.7%   
[gumbel] Running Gumbel Method...  30.8%   
[gumbel] Running Gumbel Method...  30.9%   
[gumbel] Running Gumbel Method...  31.0%   
[gumbel] Running Gumbel Method...  31.1%   
[gumbel] Running Gumbel Method...  31.2%   
[gumbel] Running Gumbel Method...  31.3%   
[gumbel] Running Gumbel Method...  31.4%   
[gumbel] Running Gumbel Method...  31.5%   
[gumbel] Running Gumbel Method...  31.5%   
[gumbel] Running Gumbel Method...  31.6%   
[gumbel] Running Gumbel Method...  31.7%   
[gumbel] Running Gumbel Method...  31.8%   
[gumbel] Running Gumbel Method...  31.9%   
[gumbel] Running Gumbel Method...  32.0%   
[gumbel] Running Gumbel Method...  32.1%   
[gumbel] Running Gumbel Method...  32.2%   
[gumbel] Running Gumbel Method...  32.3%   
[gumbel] Running Gumbel Method...  32.4%   
[gumbel] Running Gumbel Method...  32.5%   
[gumbel] Running Gumbel Method...  32.5%   
[gumbel] Running Gumbel Method...  32.6%   
[gumbel] Running Gumbel Method...  32.7%   
[gumbel] Running Gumbel Method...  32.8%   
[gumbel] Running Gumbel Method...  32.9%   
[gumbel] Running Gumbel Method...  33.0%   
[gumbel] Running Gumbel Method...  33.1%   
[gumbel] Running Gumbel Method...  33.2%   
[gumbel] Running Gumbel Method...  33.3%   
[gumbel] Running Gumbel Method...  33.4%   
[gumbel] Running Gumbel Method...  33.5%   
[gumbel] Running Gumbel Method...  33.5%   
[gumbel] Running Gumbel Method...  33.6%   
[gumbel] Running Gumbel Method...  33.7%   
[gumbel] Running Gumbel Method...  33.8%   
[gumbel] Running Gumbel Method...  33.9%   
[gumbel] Running Gumbel Method...  34.0%   
[gumbel] Running Gumbel Method...  34.1%   
[gumbel] Running Gumbel Method...  34.2%   
[gumbel] Running Gumbel Method...  34.3%   
[gumbel] Running Gumbel Method...  34.4%   
[gumbel] Running Gumbel Method...  34.5%   
[gumbel] Running Gumbel Method...  34.5%   
[gumbel] Running Gumbel Method...  34.6%   
[gumbel] Running Gumbel Method...  34.7%   
[gumbel] Running Gumbel Method...  34.8%   
[gumbel] Running Gumbel Method...  34.9%   
[gumbel] Running Gumbel Method...  35.0%   
[gumbel] Running Gumbel Method...  35.1%   
[gumbel] Running Gumbel Method...  35.2%   
[gumbel] Running Gumbel Method...  35.3%   
[gumbel] Running Gumbel Method...  35.4%   
[gumbel] Running Gumbel Method...  35.5%   
[gumbel] Running Gumbel Method...  35.5%   
[gumbel] Running Gumbel Method...  35.6%   
[gumbel] Running Gumbel Method...  35.7%   
[gumbel] Running Gumbel Method...  35.8%   
[gumbel] Running Gumbel Method...  35.9%   
[gumbel] Running Gumbel Method...  36.0%   
[gumbel] Running Gumbel Method...  36.1%   
[gumbel] Running Gumbel Method...  36.2%   
[gumbel] Running Gumbel Method...  36.3%   
[gumbel] Running Gumbel Method...  36.4%   
[gumbel] Running Gumbel Method...  36.5%   
[gumbel] Running Gumbel Method...  36.5%   
[gumbel] Running Gumbel Method...  36.6%   
[gumbel] Running Gumbel Method...  36.7%   
[gumbel] Running Gumbel Method...  36.8%   
[gumbel] Running Gumbel Method...  36.9%   
[gumbel] Running Gumbel Method...  37.0%   
[gumbel] Running Gumbel Method...  37.1%   
[gumbel] Running Gumbel Method...  37.2%   
[gumbel] Running Gumbel Method...  37.3%   
[gumbel] Running Gumbel Method...  37.4%   
[gumbel] Running Gumbel Method...  37.5%   
[gumbel] Running Gumbel Method...  37.5%   
[gumbel] Running Gumbel Method...  37.6%   
[gumbel] Running Gumbel Method...  37.7%   
[gumbel] Running Gumbel Method...  37.8%   
[gumbel] Running Gumbel Method...  37.9%   
[gumbel] Running Gumbel Method...  38.0%   
[gumbel] Running Gumbel Method...  38.1%   
[gumbel] Running Gumbel Method...  38.2%   
[gumbel] Running Gumbel Method...  38.3%   
[gumbel] Running Gumbel Method...  38.4%   
[gumbel] Running Gumbel Method...  38.5%   
[gumbel] Running Gumbel Method...  38.5%   
[gumbel] Running Gumbel Method...  38.6%   
[gumbel] Running Gumbel Method...  38.7%   
[gumbel] Running Gumbel Method...  38.8%   
[gumbel] Running Gumbel Method...  38.9%   
[gumbel] Running Gumbel Method...  39.0%   
[gumbel] Running Gumbel Method...  39.1%   
[gumbel] Running Gumbel Method...  39.2%   
[gumbel] Running Gumbel Method...  39.3%   
[gumbel] Running Gumbel Method...  39.4%   
[gumbel] Running Gumbel Method...  39.5%   
[gumbel] Running Gumbel Method...  39.5%   
[gumbel] Running Gumbel Method...  39.6%   
[gumbel] Running Gumbel Method...  39.7%   
[gumbel] Running Gumbel Method...  39.8%   
[gumbel] Running Gumbel Method...  39.9%   
[gumbel] Running Gumbel Method...  40.0%   
[gumbel] Running Gumbel Method...  40.1%   
[gumbel] Running Gumbel Method...  40.2%   
[gumbel] Running Gumbel Method...  40.3%   
[gumbel] Running Gumbel Method...  40.4%   
[gumbel] Running Gumbel Method...  40.5%   
[gumbel] Running Gumbel Method...  40.5%   
[gumbel] Running Gumbel Method...  40.6%   
[gumbel] Running Gumbel Method...  40.7%   
[gumbel] Running Gumbel Method...  40.8%   
[gumbel] Running Gumbel Method...  40.9%   
[gumbel] Running Gumbel Method...  41.0%   
[gumbel] Running Gumbel Method...  41.1%   
[gumbel] Running Gumbel Method...  41.2%   
[gumbel] Running Gumbel Method...  41.3%   
[gumbel] Running Gumbel Method...  41.4%   
[gumbel] Running Gumbel Method...  41.5%   
[gumbel] Running Gumbel Method...  41.5%   
[gumbel] Running Gumbel Method...  41.6%   
[gumbel] Running Gumbel Method...  41.7%   
[gumbel] Running Gumbel Method...  41.8%   
[gumbel] Running Gumbel Method...  41.9%   
[gumbel] Running Gumbel Method...  42.0%   
[gumbel] Running Gumbel Method...  42.1%   
[gumbel] Running Gumbel Method...  42.2%   
[gumbel] Running Gumbel Method...  42.3%   
[gumbel] Running Gumbel Method...  42.4%   
[gumbel] Running Gumbel Method...  42.5%   
[gumbel] Running Gumbel Method...  42.5%   
[gumbel] Running Gumbel Method...  42.6%   
[gumbel] Running Gumbel Method...  42.7%   
[gumbel] Running Gumbel Method...  42.8%   
[gumbel] Running Gumbel Method...  42.9%   
[gumbel] Running Gumbel Method...  43.0%   
[gumbel] Running Gumbel Method...  43.1%   
[gumbel] Running Gumbel Method...  43.2%   
[gumbel] Running Gumbel Method...  43.3%   
[gumbel] Running Gumbel Method...  43.4%   
[gumbel] Running Gumbel Method...  43.5%   
[gumbel] Running Gumbel Method...  43.5%   
[gumbel] Running Gumbel Method...  43.6%   
[gumbel] Running Gumbel Method...  43.7%   
[gumbel] Running Gumbel Method...  43.8%   
[gumbel] Running Gumbel Method...  43.9%   
[gumbel] Running Gumbel Method...  44.0%   
[gumbel] Running Gumbel Method...  44.1%   
[gumbel] Running Gumbel Method...  44.2%   
[gumbel] Running Gumbel Method...  44.3%   
[gumbel] Running Gumbel Method...  44.4%   
[gumbel] Running Gumbel Method...  44.5%   
[gumbel] Running Gumbel Method...  44.5%   
[gumbel] Running Gumbel Method...  44.6%   
[gumbel] Running Gumbel Method...  44.7%   
[gumbel] Running Gumbel Method...  44.8%   
[gumbel] Running Gumbel Method...  44.9%   
[gumbel] Running Gumbel Method...  45.0%   
[gumbel] Running Gumbel Method...  45.1%   
[gumbel] Running Gumbel Method...  45.2%   
[gumbel] Running Gumbel Method...  45.3%   
[gumbel] Running Gumbel Method...  45.4%   
[gumbel] Running Gumbel Method...  45.5%   
[gumbel] Running Gumbel Method...  45.5%   
[gumbel] Running Gumbel Method...  45.6%   
[gumbel] Running Gumbel Method...  45.7%   
[gumbel] Running Gumbel Method...  45.8%   
[gumbel] Running Gumbel Method...  45.9%   
[gumbel] Running Gumbel Method...  46.0%   
[gumbel] Running Gumbel Method...  46.1%   
[gumbel] Running Gumbel Method...  46.2%   
[gumbel] Running Gumbel Method...  46.3%   
[gumbel] Running Gumbel Method...  46.4%   
[gumbel] Running Gumbel Method...  46.5%   
[gumbel] Running Gumbel Method...  46.5%   
[gumbel] Running Gumbel Method...  46.6%   
[gumbel] Running Gumbel Method...  46.7%   
[gumbel] Running Gumbel Method...  46.8%   
[gumbel] Running Gumbel Method...  46.9%   
[gumbel] Running Gumbel Method...  47.0%   
[gumbel] Running Gumbel Method...  47.1%   
[gumbel] Running Gumbel Method...  47.2%   
[gumbel] Running Gumbel Method...  47.3%   
[gumbel] Running Gumbel Method...  47.4%   
[gumbel] Running Gumbel Method...  47.5%   
[gumbel] Running Gumbel Method...  47.5%   
[gumbel] Running Gumbel Method...  47.6%   
[gumbel] Running Gumbel Method...  47.7%   
[gumbel] Running Gumbel Method...  47.8%   
[gumbel] Running Gumbel Method...  47.9%   
[gumbel] Running Gumbel Method...  48.0%   
[gumbel] Running Gumbel Method...  48.1%   
[gumbel] Running Gumbel Method...  48.2%   
[gumbel] Running Gumbel Method...  48.3%   
[gumbel] Running Gumbel Method...  48.4%   
[gumbel] Running Gumbel Method...  48.5%   
[gumbel] Running Gumbel Method...  48.5%   
[gumbel] Running Gumbel Method...  48.6%   
[gumbel] Running Gumbel Method...  48.7%   
[gumbel] Running Gumbel Method...  48.8%   
[gumbel] Running Gumbel Method...  48.9%   
[gumbel] Running Gumbel Method...  49.0%   
[gumbel] Running Gumbel Method...  49.1%   
[gumbel] Running Gumbel Method...  49.2%   
[gumbel] Running Gumbel Method...  49.3%   
[gumbel] Running Gumbel Method...  49.4%   
[gumbel] Running Gumbel Method...  49.5%   
[gumbel] Running Gumbel Method...  49.5%   
[gumbel] Running Gumbel Method...  49.6%   
[gumbel] Running Gumbel Method...  49.7%   
[gumbel] Running Gumbel Method...  49.8%   
[gumbel] Running Gumbel Method...  49.9%   
[gumbel] Running Gumbel Method...  50.0%   
[gumbel] Running Gumbel Method...  50.1%   
[gumbel] Running Gumbel Method...  50.2%   
[gumbel] Running Gumbel Method...  50.3%   
[gumbel] Running Gumbel Method...  50.4%   
[gumbel] Running Gumbel Method...  50.5%   
[gumbel] Running Gumbel Method...  50.5%   
[gumbel] Running Gumbel Method...  50.6%   
[gumbel] Running Gumbel Method...  50.7%   
[gumbel] Running Gumbel Method...  50.8%   
[gumbel] Running Gumbel Method...  50.9%   
[gumbel] Running Gumbel Method...  51.0%   
[gumbel] Running Gumbel Method...  51.1%   
[gumbel] Running Gumbel Method...  51.2%   
[gumbel] Running Gumbel Method...  51.3%   
[gumbel] Running Gumbel Method...  51.4%   
[gumbel] Running Gumbel Method...  51.5%   
[gumbel] Running Gumbel Method...  51.5%   
[gumbel] Running Gumbel Method...  51.6%   
[gumbel] Running Gumbel Method...  51.7%   
[gumbel] Running Gumbel Method...  51.8%   
[gumbel] Running Gumbel Method...  51.9%   
[gumbel] Running Gumbel Method...  52.0%   
[gumbel] Running Gumbel Method...  52.1%   
[gumbel] Running Gumbel Method...  52.2%   
[gumbel] Running Gumbel Method...  52.3%   
[gumbel] Running Gumbel Method...  52.4%   
[gumbel] Running Gumbel Method...  52.5%   
[gumbel] Running Gumbel Method...  52.5%   
[gumbel] Running Gumbel Method...  52.6%   
[gumbel] Running Gumbel Method...  52.7%   
[gumbel] Running Gumbel Method...  52.8%   
[gumbel] Running Gumbel Method...  52.9%   
[gumbel] Running Gumbel Method...  53.0%   
[gumbel] Running Gumbel Method...  53.1%   
[gumbel] Running Gumbel Method...  53.2%   
[gumbel] Running Gumbel Method...  53.3%   
[gumbel] Running Gumbel Method...  53.4%   
[gumbel] Running Gumbel Method...  53.5%   
[gumbel] Running Gumbel Method...  53.5%   
[gumbel] Running Gumbel Method...  53.6%   
[gumbel] Running Gumbel Method...  53.7%   
[gumbel] Running Gumbel Method...  53.8%   
[gumbel] Running Gumbel Method...  53.9%   
[gumbel] Running Gumbel Method...  54.0%   
[gumbel] Running Gumbel Method...  54.1%   
[gumbel] Running Gumbel Method...  54.2%   
[gumbel] Running Gumbel Method...  54.3%   
[gumbel] Running Gumbel Method...  54.4%   
[gumbel] Running Gumbel Method...  54.5%   
[gumbel] Running Gumbel Method...  54.5%   
[gumbel] Running Gumbel Method...  54.6%   
[gumbel] Running Gumbel Method...  54.7%   
[gumbel] Running Gumbel Method...  54.8%   
[gumbel] Running Gumbel Method...  54.9%   
[gumbel] Running Gumbel Method...  55.0%   
[gumbel] Running Gumbel Method...  55.1%   
[gumbel] Running Gumbel Method...  55.2%   
[gumbel] Running Gumbel Method...  55.3%   
[gumbel] Running Gumbel Method...  55.4%   
[gumbel] Running Gumbel Method...  55.5%   
[gumbel] Running Gumbel Method...  55.5%   
[gumbel] Running Gumbel Method...  55.6%   
[gumbel] Running Gumbel Method...  55.7%   
[gumbel] Running Gumbel Method...  55.8%   
[gumbel] Running Gumbel Method...  55.9%   
[gumbel] Running Gumbel Method...  56.0%   
[gumbel] Running Gumbel Method...  56.1%   
[gumbel] Running Gumbel Method...  56.2%   
[gumbel] Running Gumbel Method...  56.3%   
[gumbel] Running Gumbel Method...  56.4%   
[gumbel] Running Gumbel Method...  56.5%   
[gumbel] Running Gumbel Method...  56.5%   
[gumbel] Running Gumbel Method...  56.6%   
[gumbel] Running Gumbel Method...  56.7%   
[gumbel] Running Gumbel Method...  56.8%   
[gumbel] Running Gumbel Method...  56.9%   
[gumbel] Running Gumbel Method...  57.0%   
[gumbel] Running Gumbel Method...  57.1%   
[gumbel] Running Gumbel Method...  57.2%   
[gumbel] Running Gumbel Method...  57.3%   
[gumbel] Running Gumbel Method...  57.4%   
[gumbel] Running Gumbel Method...  57.5%   
[gumbel] Running Gumbel Method...  57.5%   
[gumbel] Running Gumbel Method...  57.6%   
[gumbel] Running Gumbel Method...  57.7%   
[gumbel] Running Gumbel Method...  57.8%   
[gumbel] Running Gumbel Method...  57.9%   
[gumbel] Running Gumbel Method...  58.0%   
[gumbel] Running Gumbel Method...  58.1%   
[gumbel] Running Gumbel Method...  58.2%   
[gumbel] Running Gumbel Method...  58.3%   
[gumbel] Running Gumbel Method...  58.4%   
[gumbel] Running Gumbel Method...  58.5%   
[gumbel] Running Gumbel Method...  58.5%   
[gumbel] Running Gumbel Method...  58.6%   
[gumbel] Running Gumbel Method...  58.7%   
[gumbel] Running Gumbel Method...  58.8%   
[gumbel] Running Gumbel Method...  58.9%   
[gumbel] Running Gumbel Method...  59.0%   
[gumbel] Running Gumbel Method...  59.1%   
[gumbel] Running Gumbel Method...  59.2%   
[gumbel] Running Gumbel Method...  59.3%   
[gumbel] Running Gumbel Method...  59.4%   
[gumbel] Running Gumbel Method...  59.5%   
[gumbel] Running Gumbel Method...  59.5%   
[gumbel] Running Gumbel Method...  59.6%   
[gumbel] Running Gumbel Method...  59.7%   
[gumbel] Running Gumbel Method...  59.8%   
[gumbel] Running Gumbel Method...  59.9%   
[gumbel] Running Gumbel Method...  60.0%   
[gumbel] Running Gumbel Method...  60.1%   
[gumbel] Running Gumbel Method...  60.2%   
[gumbel] Running Gumbel Method...  60.3%   
[gumbel] Running Gumbel Method...  60.4%   
[gumbel] Running Gumbel Method...  60.5%   
[gumbel] Running Gumbel Method...  60.5%   
[gumbel] Running Gumbel Method...  60.6%   
[gumbel] Running Gumbel Method...  60.7%   
[gumbel] Running Gumbel Method...  60.8%   
[gumbel] Running Gumbel Method...  60.9%   
[gumbel] Running Gumbel Method...  61.0%   
[gumbel] Running Gumbel Method...  61.1%   
[gumbel] Running Gumbel Method...  61.2%   
[gumbel] Running Gumbel Method...  61.3%   
[gumbel] Running Gumbel Method...  61.4%   
[gumbel] Running Gumbel Method...  61.5%   
[gumbel] Running Gumbel Method...  61.5%   
[gumbel] Running Gumbel Method...  61.6%   
[gumbel] Running Gumbel Method...  61.7%   
[gumbel] Running Gumbel Method...  61.8%   
[gumbel] Running Gumbel Method...  61.9%   
[gumbel] Running Gumbel Method...  62.0%   
[gumbel] Running Gumbel Method...  62.1%   
[gumbel] Running Gumbel Method...  62.2%   
[gumbel] Running Gumbel Method...  62.3%   
[gumbel] Running Gumbel Method...  62.4%   
[gumbel] Running Gumbel Method...  62.5%   
[gumbel] Running Gumbel Method...  62.5%   
[gumbel] Running Gumbel Method...  62.6%   
[gumbel] Running Gumbel Method...  62.7%   
[gumbel] Running Gumbel Method...  62.8%   
[gumbel] Running Gumbel Method...  62.9%   
[gumbel] Running Gumbel Method...  63.0%   
[gumbel] Running Gumbel Method...  63.1%   
[gumbel] Running Gumbel Method...  63.2%   
[gumbel] Running Gumbel Method...  63.3%   
[gumbel] Running Gumbel Method...  63.4%   
[gumbel] Running Gumbel Method...  63.5%   
[gumbel] Running Gumbel Method...  63.5%   
[gumbel] Running Gumbel Method...  63.6%   
[gumbel] Running Gumbel Method...  63.7%   
[gumbel] Running Gumbel Method...  63.8%   
[gumbel] Running Gumbel Method...  63.9%   
[gumbel] Running Gumbel Method...  64.0%   
[gumbel] Running Gumbel Method...  64.1%   
[gumbel] Running Gumbel Method...  64.2%   
[gumbel] Running Gumbel Method...  64.3%   
[gumbel] Running Gumbel Method...  64.4%   
[gumbel] Running Gumbel Method...  64.5%   
[gumbel] Running Gumbel Method...  64.5%   
[gumbel] Running Gumbel Method...  64.6%   
[gumbel] Running Gumbel Method...  64.7%   
[gumbel] Running Gumbel Method...  64.8%   
[gumbel] Running Gumbel Method...  64.9%   
[gumbel] Running Gumbel Method...  65.0%   
[gumbel] Running Gumbel Method...  65.1%   
[gumbel] Running Gumbel Method...  65.2%   
[gumbel] Running Gumbel Method...  65.3%   
[gumbel] Running Gumbel Method...  65.4%   
[gumbel] Running Gumbel Method...  65.5%   
[gumbel] Running Gumbel Method...  65.5%   
[gumbel] Running Gumbel Method...  65.6%   
[gumbel] Running Gumbel Method...  65.7%   
[gumbel] Running Gumbel Method...  65.8%   
[gumbel] Running Gumbel Method...  65.9%   
[gumbel] Running Gumbel Method...  66.0%   
[gumbel] Running Gumbel Method...  66.1%   
[gumbel] Running Gumbel Method...  66.2%   
[gumbel] Running Gumbel Method...  66.3%   
[gumbel] Running Gumbel Method...  66.4%   
[gumbel] Running Gumbel Method...  66.5%   
[gumbel] Running Gumbel Method...  66.5%   
[gumbel] Running Gumbel Method...  66.6%   
[gumbel] Running Gumbel Method...  66.7%   
[gumbel] Running Gumbel Method...  66.8%   
[gumbel] Running Gumbel Method...  66.9%   
[gumbel] Running Gumbel Method...  67.0%   
[gumbel] Running Gumbel Method...  67.1%   
[gumbel] Running Gumbel Method...  67.2%   
[gumbel] Running Gumbel Method...  67.3%   
[gumbel] Running Gumbel Method...  67.4%   
[gumbel] Running Gumbel Method...  67.5%   
[gumbel] Running Gumbel Method...  67.5%   
[gumbel] Running Gumbel Method...  67.6%   
[gumbel] Running Gumbel Method...  67.7%   
[gumbel] Running Gumbel Method...  67.8%   
[gumbel] Running Gumbel Method...  67.9%   
[gumbel] Running Gumbel Method...  68.0%   
[gumbel] Running Gumbel Method...  68.1%   
[gumbel] Running Gumbel Method...  68.2%   
[gumbel] Running Gumbel Method...  68.3%   
[gumbel] Running Gumbel Method...  68.4%   
[gumbel] Running Gumbel Method...  68.5%   
[gumbel] Running Gumbel Method...  68.5%   
[gumbel] Running Gumbel Method...  68.6%   
[gumbel] Running Gumbel Method...  68.7%   
[gumbel] Running Gumbel Method...  68.8%   
[gumbel] Running Gumbel Method...  68.9%   
[gumbel] Running Gumbel Method...  69.0%   
[gumbel] Running Gumbel Method...  69.1%   
[gumbel] Running Gumbel Method...  69.2%   
[gumbel] Running Gumbel Method...  69.3%   
[gumbel] Running Gumbel Method...  69.4%   
[gumbel] Running Gumbel Method...  69.5%   
[gumbel] Running Gumbel Method...  69.5%   
[gumbel] Running Gumbel Method...  69.6%   
[gumbel] Running Gumbel Method...  69.7%   
[gumbel] Running Gumbel Method...  69.8%   
[gumbel] Running Gumbel Method...  69.9%   
[gumbel] Running Gumbel Method...  70.0%   
[gumbel] Running Gumbel Method...  70.1%   
[gumbel] Running Gumbel Method...  70.2%   
[gumbel] Running Gumbel Method...  70.3%   
[gumbel] Running Gumbel Method...  70.4%   
[gumbel] Running Gumbel Method...  70.5%   
[gumbel] Running Gumbel Method...  70.5%   
[gumbel] Running Gumbel Method...  70.6%   
[gumbel] Running Gumbel Method...  70.7%   
[gumbel] Running Gumbel Method...  70.8%   
[gumbel] Running Gumbel Method...  70.9%   
[gumbel] Running Gumbel Method...  71.0%   
[gumbel] Running Gumbel Method...  71.1%   
[gumbel] Running Gumbel Method...  71.2%   
[gumbel] Running Gumbel Method...  71.3%   
[gumbel] Running Gumbel Method...  71.4%   
[gumbel] Running Gumbel Method...  71.5%   
[gumbel] Running Gumbel Method...  71.5%   
[gumbel] Running Gumbel Method...  71.6%   
[gumbel] Running Gumbel Method...  71.7%   
[gumbel] Running Gumbel Method...  71.8%   
[gumbel] Running Gumbel Method...  71.9%   
[gumbel] Running Gumbel Method...  72.0%   
[gumbel] Running Gumbel Method...  72.1%   
[gumbel] Running Gumbel Method...  72.2%   
[gumbel] Running Gumbel Method...  72.3%   
[gumbel] Running Gumbel Method...  72.4%   
[gumbel] Running Gumbel Method...  72.5%   
[gumbel] Running Gumbel Method...  72.5%   
[gumbel] Running Gumbel Method...  72.6%   
[gumbel] Running Gumbel Method...  72.7%   
[gumbel] Running Gumbel Method...  72.8%   
[gumbel] Running Gumbel Method...  72.9%   
[gumbel] Running Gumbel Method...  73.0%   
[gumbel] Running Gumbel Method...  73.1%   
[gumbel] Running Gumbel Method...  73.2%   
[gumbel] Running Gumbel Method...  73.3%   
[gumbel] Running Gumbel Method...  73.4%   
[gumbel] Running Gumbel Method...  73.5%   
[gumbel] Running Gumbel Method...  73.5%   
[gumbel] Running Gumbel Method...  73.6%   
[gumbel] Running Gumbel Method...  73.7%   
[gumbel] Running Gumbel Method...  73.8%   
[gumbel] Running Gumbel Method...  73.9%   
[gumbel] Running Gumbel Method...  74.0%   
[gumbel] Running Gumbel Method...  74.1%   
[gumbel] Running Gumbel Method...  74.2%   
[gumbel] Running Gumbel Method...  74.3%   
[gumbel] Running Gumbel Method...  74.4%   
[gumbel] Running Gumbel Method...  74.5%   
[gumbel] Running Gumbel Method...  74.5%   
[gumbel] Running Gumbel Method...  74.6%   
[gumbel] Running Gumbel Method...  74.7%   
[gumbel] Running Gumbel Method...  74.8%   
[gumbel] Running Gumbel Method...  74.9%   
[gumbel] Running Gumbel Method...  75.0%   
[gumbel] Running Gumbel Method...  75.1%   
[gumbel] Running Gumbel Method...  75.2%   
[gumbel] Running Gumbel Method...  75.3%   
[gumbel] Running Gumbel Method...  75.4%   
[gumbel] Running Gumbel Method...  75.5%   
[gumbel] Running Gumbel Method...  75.5%   
[gumbel] Running Gumbel Method...  75.6%   
[gumbel] Running Gumbel Method...  75.7%   
[gumbel] Running Gumbel Method...  75.8%   
[gumbel] Running Gumbel Method...  75.9%   
[gumbel] Running Gumbel Method...  76.0%   
[gumbel] Running Gumbel Method...  76.1%   
[gumbel] Running Gumbel Method...  76.2%   
[gumbel] Running Gumbel Method...  76.3%   
[gumbel] Running Gumbel Method...  76.4%   
[gumbel] Running Gumbel Method...  76.5%   
[gumbel] Running Gumbel Method...  76.5%   
[gumbel] Running Gumbel Method...  76.6%   
[gumbel] Running Gumbel Method...  76.7%   
[gumbel] Running Gumbel Method...  76.8%   
[gumbel] Running Gumbel Method...  76.9%   
[gumbel] Running Gumbel Method...  77.0%   
[gumbel] Running Gumbel Method...  77.1%   
[gumbel] Running Gumbel Method...  77.2%   
[gumbel] Running Gumbel Method...  77.3%   
[gumbel] Running Gumbel Method...  77.4%   
[gumbel] Running Gumbel Method...  77.5%   
[gumbel] Running Gumbel Method...  77.5%   
[gumbel] Running Gumbel Method...  77.6%   
[gumbel] Running Gumbel Method...  77.7%   
[gumbel] Running Gumbel Method...  77.8%   
[gumbel] Running Gumbel Method...  77.9%   
[gumbel] Running Gumbel Method...  78.0%   
[gumbel] Running Gumbel Method...  78.1%   
[gumbel] Running Gumbel Method...  78.2%   
[gumbel] Running Gumbel Method...  78.3%   
[gumbel] Running Gumbel Method...  78.4%   
[gumbel] Running Gumbel Method...  78.5%   
[gumbel] Running Gumbel Method...  78.5%   
[gumbel] Running Gumbel Method...  78.6%   
[gumbel] Running Gumbel Method...  78.7%   
[gumbel] Running Gumbel Method...  78.8%   
[gumbel] Running Gumbel Method...  78.9%   
[gumbel] Running Gumbel Method...  79.0%   
[gumbel] Running Gumbel Method...  79.1%   
[gumbel] Running Gumbel Method...  79.2%   
[gumbel] Running Gumbel Method...  79.3%   
[gumbel] Running Gumbel Method...  79.4%   
[gumbel] Running Gumbel Method...  79.5%   
[gumbel] Running Gumbel Method...  79.5%   
[gumbel] Running Gumbel Method...  79.6%   
[gumbel] Running Gumbel Method...  79.7%   
[gumbel] Running Gumbel Method...  79.8%   
[gumbel] Running Gumbel Method...  79.9%   
[gumbel] Running Gumbel Method...  80.0%   
[gumbel] Running Gumbel Method...  80.1%   
[gumbel] Running Gumbel Method...  80.2%   
[gumbel] Running Gumbel Method...  80.3%   
[gumbel] Running Gumbel Method...  80.4%   
[gumbel] Running Gumbel Method...  80.5%   
[gumbel] Running Gumbel Method...  80.5%   
[gumbel] Running Gumbel Method...  80.6%   
[gumbel] Running Gumbel Method...  80.7%   
[gumbel] Running Gumbel Method...  80.8%   
[gumbel] Running Gumbel Method...  80.9%   
[gumbel] Running Gumbel Method...  81.0%   
[gumbel] Running Gumbel Method...  81.1%   
[gumbel] Running Gumbel Method...  81.2%   
[gumbel] Running Gumbel Method...  81.3%   
[gumbel] Running Gumbel Method...  81.4%   
[gumbel] Running Gumbel Method...  81.5%   
[gumbel] Running Gumbel Method...  81.5%   
[gumbel] Running Gumbel Method...  81.6%   
[gumbel] Running Gumbel Method...  81.7%   
[gumbel] Running Gumbel Method...  81.8%   
[gumbel] Running Gumbel Method...  81.9%   
[gumbel] Running Gumbel Method...  82.0%   
[gumbel] Running Gumbel Method...  82.1%   
[gumbel] Running Gumbel Method...  82.2%   
[gumbel] Running Gumbel Method...  82.3%   
[gumbel] Running Gumbel Method...  82.4%   
[gumbel] Running Gumbel Method...  82.5%   
[gumbel] Running Gumbel Method...  82.5%   
[gumbel] Running Gumbel Method...  82.6%   
[gumbel] Running Gumbel Method...  82.7%   
[gumbel] Running Gumbel Method...  82.8%   
[gumbel] Running Gumbel Method...  82.9%   
[gumbel] Running Gumbel Method...  83.0%   
[gumbel] Running Gumbel Method...  83.1%   
[gumbel] Running Gumbel Method...  83.2%   
[gumbel] Running Gumbel Method...  83.3%   
[gumbel] Running Gumbel Method...  83.4%   
[gumbel] Running Gumbel Method...  83.5%   
[gumbel] Running Gumbel Method...  83.5%   
[gumbel] Running Gumbel Method...  83.6%   
[gumbel] Running Gumbel Method...  83.7%   
[gumbel] Running Gumbel Method...  83.8%   
[gumbel] Running Gumbel Method...  83.9%   
[gumbel] Running Gumbel Method...  84.0%   
[gumbel] Running Gumbel Method...  84.1%   
[gumbel] Running Gumbel Method...  84.2%   
[gumbel] Running Gumbel Method...  84.3%   
[gumbel] Running Gumbel Method...  84.4%   
[gumbel] Running Gumbel Method...  84.5%   
[gumbel] Running Gumbel Method...  84.5%   
[gumbel] Running Gumbel Method...  84.6%   
[gumbel] Running Gumbel Method...  84.7%   
[gumbel] Running Gumbel Method...  84.8%   
[gumbel] Running Gumbel Method...  84.9%   
[gumbel] Running Gumbel Method...  85.0%   
[gumbel] Running Gumbel Method...  85.1%   
[gumbel] Running Gumbel Method...  85.2%   
[gumbel] Running Gumbel Method...  85.3%   
[gumbel] Running Gumbel Method...  85.4%   
[gumbel] Running Gumbel Method...  85.5%   
[gumbel] Running Gumbel Method...  85.5%   
[gumbel] Running Gumbel Method...  85.6%   
[gumbel] Running Gumbel Method...  85.7%   
[gumbel] Running Gumbel Method...  85.8%   
[gumbel] Running Gumbel Method...  85.9%   
[gumbel] Running Gumbel Method...  86.0%   
[gumbel] Running Gumbel Method...  86.1%   
[gumbel] Running Gumbel Method...  86.2%   
[gumbel] Running Gumbel Method...  86.3%   
[gumbel] Running Gumbel Method...  86.4%   
[gumbel] Running Gumbel Method...  86.5%   
[gumbel] Running Gumbel Method...  86.5%   
[gumbel] Running Gumbel Method...  86.6%   
[gumbel] Running Gumbel Method...  86.7%   
[gumbel] Running Gumbel Method...  86.8%   
[gumbel] Running Gumbel Method...  86.9%   
[gumbel] Running Gumbel Method...  87.0%   
[gumbel] Running Gumbel Method...  87.1%   
[gumbel] Running Gumbel Method...  87.2%   
[gumbel] Running Gumbel Method...  87.3%   
[gumbel] Running Gumbel Method...  87.4%   
[gumbel] Running Gumbel Method...  87.5%   
[gumbel] Running Gumbel Method...  87.5%   
[gumbel] Running Gumbel Method...  87.6%   
[gumbel] Running Gumbel Method...  87.7%   
[gumbel] Running Gumbel Method...  87.8%   
[gumbel] Running Gumbel Method...  87.9%   
[gumbel] Running Gumbel Method...  88.0%   
[gumbel] Running Gumbel Method...  88.1%   
[gumbel] Running Gumbel Method...  88.2%   
[gumbel] Running Gumbel Method...  88.3%   
[gumbel] Running Gumbel Method...  88.4%   
[gumbel] Running Gumbel Method...  88.5%   
[gumbel] Running Gumbel Method...  88.5%   
[gumbel] Running Gumbel Method...  88.6%   
[gumbel] Running Gumbel Method...  88.7%   
[gumbel] Running Gumbel Method...  88.8%   
[gumbel] Running Gumbel Method...  88.9%   
[gumbel] Running Gumbel Method...  89.0%   
[gumbel] Running Gumbel Method...  89.1%   
[gumbel] Running Gumbel Method...  89.2%   
[gumbel] Running Gumbel Method...  89.3%   
[gumbel] Running Gumbel Method...  89.4%   
[gumbel] Running Gumbel Method...  89.5%   
[gumbel] Running Gumbel Method...  89.5%   
[gumbel] Running Gumbel Method...  89.6%   
[gumbel] Running Gumbel Method...  89.7%   
[gumbel] Running Gumbel Method...  89.8%   
[gumbel] Running Gumbel Method...  89.9%   
[gumbel] Running Gumbel Method...  90.0%   
[gumbel] Running Gumbel Method...  90.1%   
[gumbel] Running Gumbel Method...  90.2%   
[gumbel] Running Gumbel Method...  90.3%   
[gumbel] Running Gumbel Method...  90.4%   
[gumbel] Running Gumbel Method...  90.5%   
[gumbel] Running Gumbel Method...  90.5%   
[gumbel] Running Gumbel Method...  90.6%   
[gumbel] Running Gumbel Method...  90.7%   
[gumbel] Running Gumbel Method...  90.8%   
[gumbel] Running Gumbel Method...  90.9%   
[gumbel] Running Gumbel Method...  91.0%   
[gumbel] Running Gumbel Method...  91.1%   
[gumbel] Running Gumbel Method...  91.2%   
[gumbel] Running Gumbel Method...  91.3%   
[gumbel] Running Gumbel Method...  91.4%   
[gumbel] Running Gumbel Method...  91.5%   
[gumbel] Running Gumbel Method...  91.5%   
[gumbel] Running Gumbel Method...  91.6%   
[gumbel] Running Gumbel Method...  91.7%   
[gumbel] Running Gumbel Method...  91.8%   
[gumbel] Running Gumbel Method...  91.9%   
[gumbel] Running Gumbel Method...  92.0%   
[gumbel] Running Gumbel Method...  92.1%   
[gumbel] Running Gumbel Method...  92.2%   
[gumbel] Running Gumbel Method...  92.3%   
[gumbel] Running Gumbel Method...  92.4%   
[gumbel] Running Gumbel Method...  92.5%   
[gumbel] Running Gumbel Method...  92.5%   
[gumbel] Running Gumbel Method...  92.6%   
[gumbel] Running Gumbel Method...  92.7%   
[gumbel] Running Gumbel Method...  92.8%   
[gumbel] Running Gumbel Method...  92.9%   
[gumbel] Running Gumbel Method...  93.0%   
[gumbel] Running Gumbel Method...  93.1%   
[gumbel] Running Gumbel Method...  93.2%   
[gumbel] Running Gumbel Method...  93.3%   
[gumbel] Running Gumbel Method...  93.4%   
[gumbel] Running Gumbel Method...  93.5%   
[gumbel] Running Gumbel Method...  93.5%   
[gumbel] Running Gumbel Method...  93.6%   
[gumbel] Running Gumbel Method...  93.7%   
[gumbel] Running Gumbel Method...  93.8%   
[gumbel] Running Gumbel Method...  93.9%   
[gumbel] Running Gumbel Method...  94.0%   
[gumbel] Running Gumbel Method...  94.1%   
[gumbel] Running Gumbel Method...  94.2%   
[gumbel] Running Gumbel Method...  94.3%   
[gumbel] Running Gumbel Method...  94.4%   
[gumbel] Running Gumbel Method...  94.5%   
[gumbel] Running Gumbel Method...  94.5%   
[gumbel] Running Gumbel Method...  94.6%   
[gumbel] Running Gumbel Method...  94.7%   
[gumbel] Running Gumbel Method...  94.8%   
[gumbel] Running Gumbel Method...  94.9%   
[gumbel] Running Gumbel Method...  95.0%   
[gumbel] Running Gumbel Method...  95.1%   
[gumbel] Running Gumbel Method...  95.2%   
[gumbel] Running Gumbel Method...  95.3%   
[gumbel] Running Gumbel Method...  95.4%   
[gumbel] Running Gumbel Method...  95.5%   
[gumbel] Running Gumbel Method...  95.5%   
[gumbel] Running Gumbel Method...  95.6%   
[gumbel] Running Gumbel Method...  95.7%   
[gumbel] Running Gumbel Method...  95.8%   
[gumbel] Running Gumbel Method...  95.9%   
[gumbel] Running Gumbel Method...  96.0%   
[gumbel] Running Gumbel Method...  96.1%   
[gumbel] Running Gumbel Method...  96.2%   
[gumbel] Running Gumbel Method...  96.3%   
[gumbel] Running Gumbel Method...  96.4%   
[gumbel] Running Gumbel Method...  96.5%   
[gumbel] Running Gumbel Method...  96.5%   
[gumbel] Running Gumbel Method...  96.6%   
[gumbel] Running Gumbel Method...  96.7%   
[gumbel] Running Gumbel Method...  96.8%   
[gumbel] Running Gumbel Method...  96.9%   
[gumbel] Running Gumbel Method...  97.0%   
[gumbel] Running Gumbel Method...  97.1%   
[gumbel] Running Gumbel Method...  97.2%   
[gumbel] Running Gumbel Method...  97.3%   
[gumbel] Running Gumbel Method...  97.4%   
[gumbel] Running Gumbel Method...  97.5%   
[gumbel] Running Gumbel Method...  97.5%   
[gumbel] Running Gumbel Method...  97.6%   
[gumbel] Running Gumbel Method...  97.7%   
[gumbel] Running Gumbel Method...  97.8%   
[gumbel] Running Gumbel Method...  97.9%   
[gumbel] Running Gumbel Method...  98.0%   
[gumbel] Running Gumbel Method...  98.1%   
[gumbel] Running Gumbel Method...  98.2%   
[gumbel] Running Gumbel Method...  98.3%   
[gumbel] Running Gumbel Method...  98.4%   
[gumbel] Running Gumbel Method...  98.5%   
[gumbel] Running Gumbel Method...  98.5%   
[gumbel] Running Gumbel Method...  98.6%   
[gumbel] Running Gumbel Method...  98.7%   
[gumbel] Running Gumbel Method...  98.8%   
[gumbel] Running Gumbel Method...  98.9%   
[gumbel] Running Gumbel Method...  99.0%   
[gumbel] Running Gumbel Method...  99.1%   
[gumbel] Running Gumbel Method...  99.2%   
[gumbel] Running Gumbel Method...  99.3%   
[gumbel] Running Gumbel Method...  99.4%   
[gumbel] Running Gumbel Method...  99.5%   
[gumbel] Running Gumbel Method...  99.5%   
[gumbel] Running Gumbel Method...  99.6%   
[gumbel] Running Gumbel Method...  99.7%   
[gumbel] Running Gumbel Method...  99.8%   
[gumbel] Running Gumbel Method...  99.9%   
[gumbel] Running Gumbel Method... 100.0%   
ok
test_HMM (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/analysis/hmm.py:194: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
  T = len([1 for line in open(ctrldata[0]).readlines() if not line.startswith("#")])
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[gumbel] 
[gumbel] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[gumbel] Finished Gumbel Method
Removing output file...


####################
tests.test_analysis_methods.TestMethods.test_HMM
####################
[hmm] Starting HMM Method
[hmm] Getting Data
[hmm] Normalizing using: TTR
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[hmm] Running HMM Method... 90.0%   
[hmm] Running HMM Method... 92.5%   
[hmm] Running HMM Method... 95.0%   
[hmm] Running HMM Method... 97.5%   
ok
test_anova (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:121: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
  for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[hmm] 
[hmm] Finished HMM - Sites Method
[hmm] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[hmm] Creating HMM Genes Level Output
[hmm] Adding File: /<<PKGBUILDDIR>>/tests/testoutput_genes.txt
[hmm] Finished HMM Method
Removing output file...


####################
tests.test_analysis_methods.TestMethods.test_anova
####################
[anova] Starting Anova analysis
[anova] Getting Data
[anova] Normalizing using: TTR
[anova] Running Anova
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/<<PKGBUILDDIR>>/tests/transit_test.py:89: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
  for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/glycerol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:910: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep1.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep2.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:927: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/data/cholesterol_H37Rv_rep3.wig' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1214: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:518: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test.prot_table' mode='r' encoding='UTF-8'>
  for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[anova] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[anova] Finished Anova analysis
[anova] Time: 5.7s

Removing output file...


####################
tests.test_analysis_methods.TestMethods.test_resampling
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Performing LOESS Correction
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Performing LOESS Correction
[resampling] Running Resampling Method...   2.0%   
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/<<PKGBUILDDIR>>/tests/transit_test.py:89: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
  for line in open(fname):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling_adaptive (tests.test_analysis_methods.TestMethods) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/stat_tools.py:717: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray
  DATA[K] = numpy.array([L1[K], L2[K]])
/<<PKGBUILDDIR>>/tests/../src/pytransit/stat_tools.py:515: VisibleDeprecationWarning: Creating an ndarray from ragged nested sequences (which is a list-or-tuple of lists-or-tuples-or ndarrays with different lengths or shapes) is deprecated. If you meant to do this, you must specify 'dtype=object' when creating the ndarray
  E[L] = numpy.array([perm[:n1], perm[n1:]])
[resampling] 
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...


####################
tests.test_analysis_methods.TestMethods.test_resampling_adaptive
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method...   2.0%   
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ok
test_resampling_combined_wig (tests.test_analysis_methods.TestMethods) ... [resampling] 
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...


####################
tests.test_analysis_methods.TestMethods.test_resampling_combined_wig
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
[resampling] Running Resampling Method...   2.0%   
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ok
test_resampling_histogram (tests.test_analysis_methods.TestMethods) ... [resampling] 
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
36
35
Removing output file...


####################
tests.test_analysis_methods.TestMethods.test_resampling_histogram
####################
[resampling] Starting resampling Method
[resampling] Getting Data
[resampling] Preprocessing Ctrl data...
[resampling] Normalizing using: TTR
[resampling] Preprocessing Exp data...
[resampling] Normalizing using: TTR
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test_resampling_multistrain (tests.test_analysis_methods.TestMethods) ... [resampling] 
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####################
tests.test_analysis_methods.TestMethods.test_resampling_multistrain
####################
[resampling] Starting resampling Method
[resampling] Getting Data
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test_utest (tests.test_analysis_methods.TestMethods) ... [resampling] 
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####################
tests.test_analysis_methods.TestMethods.test_utest
####################
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test_zinb (tests.test_analysis_methods.TestMethods) ... skipped 'requires R, rpy2'
test_zinb_covariates (tests.test_analysis_methods.TestMethods) ... skipped 'requires R, rpy2'
test_zinb_interactions (tests.test_analysis_methods.TestMethods) ... skipped 'requires R, rpy2'
test_TTR (tests.test_norm_methods.TestNormMethods) ... ok
test_nonorm (tests.test_norm_methods.TestNormMethods) ... ok
test_resampling_NZMean (tests.test_norm_methods.TestNormMethods) ... [utest] 
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[utest] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
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Removing output file...


####################
tests.test_norm_methods.TestNormMethods.test_TTR
####################


####################
tests.test_norm_methods.TestNormMethods.test_nonorm
####################


####################
tests.test_norm_methods.TestNormMethods.test_resampling_NZMean
####################
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test_resampling_Quantile (tests.test_norm_methods.TestNormMethods) ... [resampling] 
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Removing output file...


####################
tests.test_norm_methods.TestNormMethods.test_resampling_Quantile
####################
[resampling] Starting resampling Method
[resampling] Getting Data
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/<<PKGBUILDDIR>>/tests/transit_test.py:75: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/testoutput.txt' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_resampling_TTR (tests.test_norm_methods.TestNormMethods) ... [resampling] 
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[resampling] Finished resampling Method
Removing output file...


####################
tests.test_norm_methods.TestNormMethods.test_resampling_TTR
####################
[resampling] Starting resampling Method
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test_resampling_TotReads (tests.test_norm_methods.TestNormMethods) ... [resampling] 
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Removing output file...


####################
tests.test_norm_methods.TestNormMethods.test_resampling_TotReads
####################
[resampling] Starting resampling Method
[resampling] Getting Data
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test_resampling_ZINFNB (tests.test_norm_methods.TestNormMethods) ... [resampling] 
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...


####################
tests.test_norm_methods.TestNormMethods.test_resampling_ZINFNB
####################
[resampling] Starting resampling Method
[resampling] Getting Data
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ok
test_resampling_nonorm (tests.test_norm_methods.TestNormMethods) ... [resampling] 
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...


####################
tests.test_norm_methods.TestNormMethods.test_resampling_nonorm
####################
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[resampling] Getting Data
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ok
test_cleanargs_flag_arguments_w_quotes (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_cleanargs_flag_arguments_with_double_dash (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_cleanargs_flag_without_arguments (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_cleanargs_negative_arguments (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_cleanargs_positional_arguments (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_cleanargs_positional_arguments_w_quotes (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_file_types (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_genes_creation_fromdata (tests.test_pytransit_tools.TestTnSeqTools) ... /<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1287: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:1214: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
  for line in open(path):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytransit/tnseq_tools.py:518: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/../src/pytransit/genomes/H37Rv.prot_table' mode='r' encoding='UTF-8'>
  for line in open(self.annotation):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
ok
test_genes_creation_fromwig (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_normalization (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_read_data (tests.test_pytransit_tools.TestTnSeqTools) ... ok
test_tpp_flag_primer (tests.test_tpp.TestTPP) ... skipped 'requires local data file'
test_tpp_multicontig_auto_replicon_ids (tests.test_tpp.TestTPP) ... [tn_preprocess] running pre-processing on /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq and 
[tn_preprocess] protocol: Sassetti
[tn_preprocess] transposon type: Himar1
[tn_preprocess] One reference genome specified: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna, containing 3 records.
[tn_preprocess] Autogenerating replicon_ids...
[tn_preprocess] extracting reads...
[tn_preprocess] fastq2reads: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq -> /<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:85: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq' mode='r' encoding='UTF-8'>
  for line in open(infile):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] assuming single-ended reads
[tn_preprocess] creating /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1
[tn_preprocess] prefix sequence: 
[tn_preprocess] Looking for start of Tn prefix within P,Q = [0,20]
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:276: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'>
  for line in open(infile):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] mapping reads using BWA...(this takes a couple of minutes)
[tn_preprocess] /usr/bin/bwa index /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
b'[bwa_index] Pack FASTA... 0.47 sec'
b'[bwa_index] Construct BWT for the packed sequence...'
b'[bwa_index] 15.11 seconds elapse.'
b'[bwa_index] Update BWT... 0.39 sec'
b'[bwa_index] Pack forward-only FASTA... 0.31 sec'
b'[bwa_index] Construct SA from BWT and Occ... 12.61 sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa index /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna'
b'[main] Real time: 29.480 sec; CPU: 28.910 sec'
b''
[tn_preprocess] /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1 > /<<PKGBUILDDIR>>/tests/test_tpp_temp.sam
b'[M::bwa_idx_load_from_disk] read 0 ALT contigs'
b'[M::process] read 2500 sequences (304052 bp)...'
b'[M::mem_process_seqs] Processed 2500 reads in 1.960 CPU sec, 1.959 real sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1'
b'[main] Real time: 2.096 sec; CPU: 2.055 sec'
b''
[tn_preprocess] tabulating template counts and statistics for reference genome /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:378: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/data/test-multicontig.fna' mode='r' encoding='UTF-8'>
  for line in open(filename):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:560: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.sam' mode='r' encoding='UTF-8'>
  for line in open(sam):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_1.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_2.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_3.wig
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1108: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'>
  for line in open(vars.reads1):
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1117: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1' mode='r' encoding='UTF-8'>
  read_length = get_read_length(vars.base + ".reads1")
ResourceWarning: Enable tracemalloc to get the object allocation traceback
/<<PKGBUILDDIR>>/tests/../src/pytpp/tpp_tools.py:1118: ResourceWarning: unclosed file <_io.TextIOWrapper name='/<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1' mode='r' encoding='UTF-8'>
  mean_r1_genomic = get_genomic_portion(vars.base + ".trimmed1")
ResourceWarning: Enable tracemalloc to get the object allocation traceback
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp.tn_stats
[tn_preprocess] Done.
ok
test_tpp_multicontig_empty_prefix (tests.test_tpp.TestTPP) ... [tn_preprocess] running pre-processing on /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq and 
[tn_preprocess] protocol: Sassetti
[tn_preprocess] transposon type: Himar1
[tn_preprocess] One reference genome specified: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna, containing 3 records.
[tn_preprocess] extracting reads...
[tn_preprocess] fastq2reads: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq -> /<<PKGBUILDDIR>>/tests/test_tpp_temp.reads1
[tn_preprocess] assuming single-ended reads
[tn_preprocess] creating /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1
[tn_preprocess] prefix sequence: 
[tn_preprocess] Looking for start of Tn prefix within P,Q = [0,20]
[tn_preprocess] mapping reads using BWA...(this takes a couple of minutes)
[tn_preprocess] /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1 > /<<PKGBUILDDIR>>/tests/test_tpp_temp.sam
b'[M::bwa_idx_load_from_disk] read 0 ALT contigs'
b'[M::process] read 2500 sequences (304052 bp)...'
b'[M::mem_process_seqs] Processed 2500 reads in 1.960 CPU sec, 1.961 real sec'
b'[main] Version: 0.7.17-r1188'
b'[main] CMD: /usr/bin/bwa mem /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna /<<PKGBUILDDIR>>/tests/test_tpp_temp.trimmed1'
b'[main] Real time: 2.124 sec; CPU: 2.050 sec'
b''
[tn_preprocess] tabulating template counts and statistics for reference genome /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_a.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_b.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp_c.wig
[tn_preprocess] writing /<<PKGBUILDDIR>>/tests/test_tpp_temp.tn_stats
[tn_preprocess] Done.
ok
test_tpp_noflag_primer (tests.test_tpp.TestTPP) ... skipped 'requires local data file'
test_tpp_protocol_mme1 (tests.test_tpp.TestTPP) ... skipped 'requires local data file'

----------------------------------------------------------------------
Ran 39 tests in 2047.633s

OK (skipped=6)
[resampling] 
[resampling] Performing Benjamini-Hochberg Correction
[resampling] Adding File: /<<PKGBUILDDIR>>/tests/testoutput.txt
[resampling] Finished resampling Method
Removing output file...


####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_w_quotes
####################


####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_arguments_with_double_dash
####################


####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_flag_without_arguments
####################


####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_negative_arguments
####################


####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments
####################


####################
tests.test_pytransit_tools.TestTnSeqTools.test_cleanargs_positional_arguments_w_quotes
####################


####################
tests.test_pytransit_tools.TestTnSeqTools.test_file_types
####################


####################
tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromdata
####################


####################
tests.test_pytransit_tools.TestTnSeqTools.test_genes_creation_fromwig
####################


####################
tests.test_pytransit_tools.TestTnSeqTools.test_normalization
####################


####################
tests.test_pytransit_tools.TestTnSeqTools.test_read_data
####################


####################
tests.test_tpp.TestTPP.test_tpp_multicontig_auto_replicon_ids
####################
# title: Tn-Seq Pre-Processor
# date: 10/15/2021 06:51:49
# command: python python3.9 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py
# transposon type: Himar1
# protocol type: Sassetti
# bwa flags:
# read1: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# read2:
# ref_genome: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
# replicon_ids: 1,2,3
# total_reads (or read pairs): 2500
# trimmed_reads (reads with valid Tn prefix, and insert size>20bp): 2512
# reads1_mapped: 2116
# reads2_mapped: 0
# mapped_reads (both R1 and R2 map into genome, and R2 has a proper barcode): 2116
# read_count (TA sites only, for Himar1):
#   1: 63
#   2: 0
#   3: 0
# template_count:
#   1: 63
#   2: 0
#   3: 0
# template_ratio (reads per template):
#   1: 1.00
#   2: 0.00
#   3: 0.00
# TA_sites:
#   1: 89994
#   2: 646
#   3: 664
# TAs_hit:
#   1: 63
#   2: 0
#   3: 0
# density:
#   1: 0.001
#   2: 0.000
#   3: 0.000
# max_count (among templates):
#   1: 1
#   2: 0
#   3: 0
# max_site (coordinate):
#   1: 4977050
#   2: 57441
#   3: 38111
# NZ_mean (among templates):
#   1: 1.0
#   2: 0.0
#   3: 0.0
# FR_corr (Fwd templates vs. Rev templates):
#   1: -0.000
#   2: nan
#   3: nan
# BC_corr (reads vs. templates, summed over both strands):
#   1: nan
#   2: nan
#   3: nan
# primer_matches: 36 reads (1.4%) contain CTAGAGGGCCCAATTCGCCCTATAGTGAGT (Himar1)
# vector_matches: 36 reads (1.4%) contain CTAGACCGTCCAGTCTGGCAGGCCGGAAAC (phiMycoMarT7)
# adapter_matches: 57 reads (2.3%) contain GATCGGAAGAGCACACGTCTGAACTCCAGTCAC (Illumina/TruSeq index)
# misprimed_reads: 17 reads (0.7%) contain Himar1 prefix but don't end in TGTTA
# read_length: 125 bp
# mean_R1_genomic_length: 121.6 bp
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file


####################
tests.test_tpp.TestTPP.test_tpp_multicontig_empty_prefix
####################
# title: Tn-Seq Pre-Processor
# date: 10/15/2021 06:52:12
# command: python python3.9 -m unittest -v tests/test_analysis_methods.py tests/test_norm_methods.py tests/test_pytransit_tools.py tests/test_tpp.py tests/transit_test.py
# transposon type: Himar1
# protocol type: Sassetti
# bwa flags:
# read1: /<<PKGBUILDDIR>>/tests/data/test-multicontig-1.fastq
# read2:
# ref_genome: /<<PKGBUILDDIR>>/tests/data/test-multicontig.fna
# replicon_ids: a,b,c
# total_reads (or read pairs): 2500
# trimmed_reads (reads with valid Tn prefix, and insert size>20bp): 2512
# reads1_mapped: 2116
# reads2_mapped: 0
# mapped_reads (both R1 and R2 map into genome, and R2 has a proper barcode): 2116
# read_count (TA sites only, for Himar1):
#   a: 63
#   b: 0
#   c: 0
# template_count:
#   a: 63
#   b: 0
#   c: 0
# template_ratio (reads per template):
#   a: 1.00
#   b: 0.00
#   c: 0.00
# TA_sites:
#   a: 89994
#   b: 646
#   c: 664
# TAs_hit:
#   a: 63
#   b: 0
#   c: 0
# density:
#   a: 0.001
#   b: 0.000
#   c: 0.000
# max_count (among templates):
#   a: 1
#   b: 0
#   c: 0
# max_site (coordinate):
#   a: 4977050
#   b: 57441
#   c: 38111
# NZ_mean (among templates):
#   a: 1.0
#   b: 0.0
#   c: 0.0
# FR_corr (Fwd templates vs. Rev templates):
#   a: -0.000
#   b: nan
#   c: nan
# BC_corr (reads vs. templates, summed over both strands):
#   a: nan
#   b: nan
#   c: nan
# primer_matches: 36 reads (1.4%) contain CTAGAGGGCCCAATTCGCCCTATAGTGAGT (Himar1)
# vector_matches: 36 reads (1.4%) contain CTAGACCGTCCAGTCTGGCAGGCCGGAAAC (phiMycoMarT7)
# adapter_matches: 57 reads (2.3%) contain GATCGGAAGAGCACACGTCTGAACTCCAGTCAC (Illumina/TruSeq index)
# misprimed_reads: 17 reads (0.7%) contain Himar1 prefix but don't end in TGTTA
# read_length: 125 bp
# mean_R1_genomic_length: 121.6 bp
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
Removing tpp test file
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install --destdir=debian/tnseq-transit/ -a -O--buildsystem=pybuild
I: pybuild base:232: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/tnseq-transit 
running install
running build
running build_py
running egg_info
writing tnseq_transit.egg-info/PKG-INFO
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing requirements to tnseq_transit.egg-info/requires.txt
writing top-level names to tnseq_transit.egg-info/top_level.txt
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'VERSION'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
running install_lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/images.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/anova.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/corrplot.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/gi.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/heatmap.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/norm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/normalize.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/pathway_enrichment.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/tnseq_stats.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/utest.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/analysis/zinb.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/convert/gff_to_prot_table.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/combined_wig.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/igv.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/mean_counts.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/export/prot_table.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/COG_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/GO_associated_Rvs.csv -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/GO_term_names.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/GO_terms_for_each_Rv.obo-3-11-18.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv_COG_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv_GO_terms.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/H37Rv_sanger_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/README.md -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/cholesterol_glycerol_combined.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/gene_ontology.1_2.3-11-18.obo -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/samples_metadata_cg.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/samples_metadata_cg_covar.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/samples_metadata_cg_interactions.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/sanger_roles.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/data/smeg_GO_terms.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/data
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.9/build/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/genomes
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/tpp_gui.py to tpp_gui.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytpp/tpp_tools.py to tpp_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/__main__.py to __main__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/draw_trash.py to draw_trash.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/fileDisplay.py to fileDisplay.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/images.py to images.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/norm_tools.py to norm_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/qcDisplay.py to qcDisplay.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/stat_tools.py to stat_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/tnseq_tools.py to tnseq_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/transit_gui.py to transit_gui.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/transit_tools.py to transit_tools.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/trash.py to trash.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/view_trash.py to view_trash.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/__init__.py to __init__.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/anova.py to anova.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/base.py to base.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/binomial.py to binomial.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/corrplot.py to corrplot.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/example.py to example.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/gi.py to gi.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/griffin.py to griffin.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/gumbel.py to gumbel.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/heatmap.py to heatmap.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/hmm.py to hmm.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/norm.py to norm.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/normalize.py to normalize.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/pathway_enrichment.py to pathway_enrichment.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/rankproduct.py to rankproduct.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/resampling.py to resampling.cpython-39.pyc
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byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/tnseq_stats.py to tnseq_stats.cpython-39.pyc
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byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/analysis/zinb.py to zinb.cpython-39.pyc
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byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert/base.py to base.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/convert/gff_to_prot_table.py to gff_to_prot_table.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/__init__.py to __init__.cpython-39.pyc
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byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/combined_wig.py to combined_wig.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/igv.py to igv.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/mean_counts.py to mean_counts.cpython-39.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/pytransit/export/prot_table.py to prot_table.cpython-39.pyc
running install_egg_info
Copying tnseq_transit.egg-info to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.9/dist-packages/tnseq_transit-3.2.2.egg-info
Skipping SOURCES.txt
running install_scripts
Installing tpp script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
Installing transit script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mv debian/tnseq-transit/usr/bin/tpp debian/tnseq-transit/usr/bin/transit-tpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_installman -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
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   dh_strip_nondeterminism -a -O--buildsystem=pybuild
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   dh_builddeb -a -O--buildsystem=pybuild
dpkg-deb: building package 'tnseq-transit' in '../tnseq-transit_3.2.2-1_armhf.deb'.
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../tnseq-transit_3.2.2-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-10-15T06:56:01Z

Finished
--------

I: Built successfully

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| Post Build Chroot                                                            |
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| Changes                                                                      |
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tnseq-transit_3.2.2-1_armhf.changes:
------------------------------------

Format: 1.8
Date: Tue, 12 Oct 2021 16:19:02 +0200
Source: tnseq-transit
Binary: tnseq-transit
Architecture: armhf
Version: 3.2.2-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 tnseq-transit - statistical calculations of essentiality of genes or genomic regi
Changes:
 tnseq-transit (3.2.2-1) unstable; urgency=medium
 .
   * Fix watchfile to detect new versions on github
   * New upstream version
   * Standards-Version: 4.6.0 (routine-update)
Checksums-Sha1:
 96d9347112865329960cf529b246b3df6aba71ea 6870 tnseq-transit_3.2.2-1_armhf.buildinfo
 da45538fc172b735c268edeb13725a8ef127f1dc 8959500 tnseq-transit_3.2.2-1_armhf.deb
Checksums-Sha256:
 5b51da7c81df83ebd2d8e3ea146ddb415a44a686c4a739147d4c40f49061e96f 6870 tnseq-transit_3.2.2-1_armhf.buildinfo
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Files:
 bde2e31a9867f009f95259caaa769ceb 6870 science optional tnseq-transit_3.2.2-1_armhf.buildinfo
 02a1c4f61c64dea8a90186c183be0588 8959500 science optional tnseq-transit_3.2.2-1_armhf.deb

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| Package contents                                                             |
+------------------------------------------------------------------------------+


tnseq-transit_3.2.2-1_armhf.deb
-------------------------------

 new Debian package, version 2.0.
 size 8959500 bytes: control archive=3920 bytes.
    1383 bytes,    28 lines      control              
    8948 bytes,    95 lines      md5sums              
     251 bytes,    12 lines   *  postinst             #!/bin/sh
     400 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: tnseq-transit
 Version: 3.2.2-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 76921
 Depends: python3-matplotlib, python3-numpy, python3-pil, python3-pkg-resources, python3-pubsub, python3-scipy, python3-statsmodels, python3-wxgtk4.0, python3:any, bwa
 Breaks: transit
 Replaces: transit
 Provides: transit
 Section: science
 Priority: optional
 Homepage: http://saclab.tamu.edu/essentiality/transit/
 Description: statistical calculations of essentiality of genes or genomic regions
  This is a software that can be used to analyze Tn-Seq datasets. It
  includes various statistical calculations of essentiality of genes or
  genomic regions (including conditional essentiality between 2
  conditions). These methods were developed and tested as a collaboration
  between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)
  .
  TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1
  or Tn5 datasets.
  .
  TRANSIT assumes you have already done pre-processing of raw sequencing
  files (.fastq) and extracted read counts into a .wig formatted file.
  The .wig file should contain the counts at all sites where an insertion
  could take place (including sites with no reads). For Himar1 datasets
  this is all TA sites in the genome. For Tn5 datasets this would be all
  nucleotides in the genome.

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-rwxr-xr-x root/root       968 2021-10-12 14:19 ./usr/bin/transit-tpp
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-rw-r--r-- root/root       457 2021-10-12 14:19 ./usr/share/man/man1/transit.1.gz


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| Post Build                                                                   |
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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 267388
Build-Time: 2323
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 951
Job: tnseq-transit_3.2.2-1
Machine Architecture: armhf
Package: tnseq-transit
Package-Time: 3341
Source-Version: 3.2.2-1
Space: 267388
Status: successful
Version: 3.2.2-1
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Finished at 2021-10-15T06:56:01Z
Build needed 00:55:41, 267388k disc space