Raspbian Package Auto-Building

Build log for tnseq-transit (3.0.1-2+b2) on armhf

tnseq-transit3.0.1-2+b2armhf → 2020-01-07 12:00:33

sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02

+==============================================================================+
| tnseq-transit 3.0.1-2+b2 (armhf)             Tue, 07 Jan 2020 11:47:16 +0000 |
+==============================================================================+

Package: tnseq-transit
Version: 3.0.1-2+b2
Source Version: 3.0.1-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-21f3cff7-4d01-4099-8570-1a471184d22a' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.3 MB in 11s (2309 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'tnseq-transit' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/tnseq-transit.git
Please use:
git clone https://salsa.debian.org/med-team/tnseq-transit.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 20.8 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main tnseq-transit 3.0.1-2 (dsc) [2156 B]
Get:2 http://172.17.0.1/private bullseye-staging/main tnseq-transit 3.0.1-2 (tar) [20.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main tnseq-transit 3.0.1-2 (diff) [3552 B]
Fetched 20.8 MB in 5s (4507 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tnseq-transit-psctPt/tnseq-transit-3.0.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tnseq-transit-psctPt' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-3A7RXF/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-3A7RXF/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-3A7RXF/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (9910 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 33 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13002 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 12), dh-python, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-statsmodels, python3-pubsub, bwa
Filtered Build-Depends: debhelper-compat (= 12), dh-python, python3-dev, python3-setuptools, python3-numpy, python3-scipy, python3-pil, python3-matplotlib, python3-statsmodels, python3-pubsub, bwa
dpkg-deb: building package 'sbuild-build-depends-tnseq-transit-dummy' in '/<<BUILDDIR>>/resolver-3A7RXF/apt_archive/sbuild-build-depends-tnseq-transit-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-tnseq-transit-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ Sources [556 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ Packages [638 B]
Fetched 2527 B in 0s (11.9 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install tnseq-transit build dependencies (apt-based resolver)
-------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils bwa cpp-9 debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx g++-9
  gcc-9 gcc-9-base gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libasan5 libatomic1 libblas3 libbsd0 libcc1-0 libcroco3
  libdebhelper-perl libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfreetype6 libgcc-9-dev libgcc1
  libgfortran5 libglib2.0-0 libgomp1 libicu63 libimagequant0 libjbig0
  libjpeg62-turbo libjs-jquery libjs-jquery-ui liblapack3 liblbfgsb0
  liblcms2-2 libmagic-mgc libmagic1 libmpdec2 libpipeline1 libpng16-16
  libpython3-dev libpython3-stdlib libpython3.7 libpython3.7-dev
  libpython3.7-minimal libpython3.7-stdlib libsigsegv2 libssl1.1
  libstdc++-9-dev libstdc++6 libsub-override-perl libtiff5 libtinfo5 libtool
  libubsan1 libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxml2 m4 man-db
  mime-support po-debconf python-matplotlib-data python3 python3-cycler
  python3-dateutil python3-decorator python3-dev python3-distutils
  python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal
  python3-numpy python3-pandas python3-pandas-lib python3-patsy python3-pil
  python3-pkg-resources python3-pubsub python3-pyparsing python3-scipy
  python3-setuptools python3-six python3-statsmodels python3-statsmodels-lib
  python3-tz python3.7 python3.7-dev python3.7-minimal sensible-utils
  ttf-bitstream-vera zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
  vacation samtools gcc-9-locales dh-make gcc-9-doc gettext-doc
  libasprintf-dev libgettextpo-dev groff libjs-jquery-ui-docs liblcms2-utils
  libstdc++-9-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
  apparmor less www-browser libmail-box-perl python3-doc python3-tk
  python3-venv python-cycler-doc dvipng ffmpeg gir1.2-gtk-3.0 ghostscript
  inkscape ipython3 librsvg2-common python-matplotlib-doc python3-cairocffi
  python3-gi python3-gi-cairo python3-gobject python3-nose python3-pyqt5
  python3-sip python3-tornado texlive-extra-utils texlive-latex-extra
  ttf-staypuft gfortran python-numpy-doc python3-pytest python3-numpy-dbg
  python-pandas-doc python-patsy-doc python-pil-doc python3-pil-dbg
  python-pyparsing-doc python-scipy-doc python-setuptools-doc
  python-statsmodels-doc python3.7-venv python3.7-doc binfmt-support
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs javascript-common libltdl-dev libmail-sendmail-perl python3-tk
  python3-numexpr python3-tables python3-xlrd python3-openpyxl python3-xlwt
  python3-bs4 python3-html5lib python3-lxml python3-olefile python3-joblib
  python3-colorama python3-cvxopt
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdmainutils bwa debhelper
  dh-autoreconf dh-python dh-strip-nondeterminism dwz file fonts-lyx gettext
  gettext-base groff-base intltool-debian libarchive-zip-perl libblas3 libbsd0
  libcroco3 libdebhelper-perl libelf1 libexpat1 libexpat1-dev
  libfile-stripnondeterminism-perl libfreetype6 libgfortran5 libglib2.0-0
  libicu63 libimagequant0 libjbig0 libjpeg62-turbo libjs-jquery
  libjs-jquery-ui liblapack3 liblbfgsb0 liblcms2-2 libmagic-mgc libmagic1
  libmpdec2 libpipeline1 libpng16-16 libpython3-dev libpython3-stdlib
  libpython3.7 libpython3.7-dev libpython3.7-minimal libpython3.7-stdlib
  libsigsegv2 libssl1.1 libsub-override-perl libtiff5 libtinfo5 libtool
  libuchardet0 libwebp6 libwebpdemux2 libwebpmux3 libxml2 m4 man-db
  mime-support po-debconf python-matplotlib-data python3 python3-cycler
  python3-dateutil python3-decorator python3-dev python3-distutils
  python3-kiwisolver python3-lib2to3 python3-matplotlib python3-minimal
  python3-numpy python3-pandas python3-pandas-lib python3-patsy python3-pil
  python3-pkg-resources python3-pubsub python3-pyparsing python3-scipy
  python3-setuptools python3-six python3-statsmodels python3-statsmodels-lib
  python3-tz python3.7 python3.7-dev python3.7-minimal
  sbuild-build-depends-tnseq-transit-dummy sensible-utils ttf-bitstream-vera
  zlib1g-dev
The following packages will be upgraded:
  cpp-9 g++-9 gcc-9 gcc-9-base libasan5 libatomic1 libcc1-0 libgcc-9-dev
  libgcc1 libgomp1 libstdc++-9-dev libstdc++6 libubsan1
13 upgraded, 96 newly installed, 0 to remove and 20 not upgraded.
Need to get 133 MB of archives.
After this operation, 331 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3A7RXF/apt_archive ./ sbuild-build-depends-tnseq-transit-dummy 0.invalid.0 [924 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 9.2.1-21+rpi1 [38.0 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf gcc-9-base armhf 9.2.1-21+rpi1 [195 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libgcc1 armhf 1:9.2.1-21+rpi1 [37.0 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 9.2.1-21+rpi1 [73.8 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 9.2.1-21+rpi1 [8160 B]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libasan5 armhf 9.2.1-21+rpi1 [348 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 9.2.1-21+rpi1 [112 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf g++-9 armhf 9.2.1-21+rpi1 [8207 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-9-dev armhf 9.2.1-21+rpi1 [1707 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libgcc-9-dev armhf 9.2.1-21+rpi1 [640 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf gcc-9 armhf 9.2.1-21+rpi1 [7715 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf cpp-9 armhf 9.2.1-21+rpi1 [7458 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 9.2.1-21+rpi1 [414 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-1 [29.5 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-minimal armhf 3.7.6-1 [585 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf python3.7-minimal armhf 3.7.6-1 [1527 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.7.5-3 [36.8 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.64 [37.8 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-stdlib armhf 3.7.6-1 [1669 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf python3.7 armhf 3.7.6-1 [350 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.7.5-3 [20.2 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.7.5-3 [62.1 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.37-6 [253 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.37-6 [111 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.37-6 [66.2 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf bwa armhf 0.7.17-4 [199 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.7.3 [174 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-1 [23.6 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-1 [14.6 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1 [1138 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.7.3 [1019 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.8.0-1 [78.3 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.8.0-1 [145 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20191017 [94.4 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf fonts-lyx all 2.3.3-2 [199 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.9-1 [119 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-1 [274 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-21+rpi1 [231 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libimagequant0 armhf 2.12.2-1.1 [27.2 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.3.1~dfsg-3 [332 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf liblbfgsb0 armhf 3.0+dfsg.3-7 [26.1 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf liblcms2-2 armhf 2.9-3 [116 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7 armhf 3.7.6-1 [1253 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libpython3.7-dev armhf 3.7.6-1 [40.2 MB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.7.5-3 [20.3 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-1 [250 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libwebpdemux2 armhf 0.6.1-2 [86.7 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libwebpmux3 armhf 0.6.1-2 [94.2 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf ttf-bitstream-vera all 1.10-8 [352 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf python-matplotlib-data all 3.1.2-1 [4139 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf python3-six all 1.13.0-1 [16.2 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf python3-cycler all 0.10.0-2 [7976 B]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf python3-dateutil all 2.7.3-3 [64.5 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf python3-decorator all 4.3.0-1.1 [14.5 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf python3.7-dev armhf 3.7.6-1 [518 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.7.5-3 [1260 B]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 41.2.0-1 [154 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf python3-kiwisolver armhf 1.0.1-2+b1 [53.3 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf python3-pyparsing all 2.4.2-1 [106 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf python3-numpy armhf 1:1.17.4-5 [2947 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf python3-matplotlib armhf 3.1.2-1 [5228 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf python3-tz all 2019.3-1 [27.2 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas-lib armhf 0.25.3+dfsg-4 [3683 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf python3-pandas all 0.25.3+dfsg-4 [1983 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf python3-patsy all 0.5.1-0.2 [172 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf python3-pil armhf 6.2.1-2 [380 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf python3-pubsub all 4.0.3-4 [46.6 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf python3-scipy armhf 1.3.3-3 [9809 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf python3-setuptools all 41.2.0-1 [307 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf python3-statsmodels-lib armhf 0.10.2-1 [1079 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf python3-statsmodels all 0.10.2-1 [3743 kB]
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Setting up libpipeline1:armhf (1.5.2-1) ...
Setting up liblcms2-2:armhf (2.9-3) ...
Setting up ttf-bitstream-vera (1.10-8) ...
Setting up mime-support (3.64) ...
Setting up libmagic-mgc (1:5.37-6) ...
Setting up libarchive-zip-perl (1.67-1) ...
Setting up libglib2.0-0:armhf (2.62.4-1) ...
No schema files found: doing nothing.
Setting up bwa (0.7.17-4) ...
Setting up fonts-lyx (2.3.3-2) ...
Setting up libdebhelper-perl (12.7.3) ...
Setting up libmagic1:armhf (1:5.37-6) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.37-6) ...
Setting up libgomp1:armhf (9.2.1-21+rpi1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libicu63:armhf (63.2-2) ...
Setting up libasan5:armhf (9.2.1-21+rpi1) ...
Setting up autotools-dev (20180224.1) ...
Setting up libblas3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.2.9-1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up libimagequant0:armhf (2.12.2-1.1) ...
Setting up libpng16-16:armhf (1.6.37-1) ...
Setting up libatomic1:armhf (9.2.1-21+rpi1) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up libgfortran5:armhf (9.2.1-21+rpi1) ...
Setting up libubsan1:armhf (9.2.1-21+rpi1) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up sensible-utils (0.0.12+nmu1) ...
Setting up libuchardet0:armhf (0.0.6-3) ...
Setting up cpp-9 (9.2.1-21+rpi1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libtiff5:armhf (4.1.0+git191117-1) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libjs-jquery (3.3.1~dfsg-3) ...
Setting up python-matplotlib-data (3.1.2-1) ...
Setting up libwebpmux3:armhf (0.6.1-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libtinfo5:armhf (6.1+20191019-1) ...
Setting up libelf1:armhf (0.176-1.1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-8) ...
Setting up libcc1-0:armhf (9.2.1-21+rpi1) ...
Setting up libfile-stripnondeterminism-perl (1.6.3-1) ...
Setting up libpython3.7-stdlib:armhf (3.7.6-1) ...
Setting up liblapack3:armhf (3.9.0-1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpython3.7:armhf (3.7.6-1) ...
Setting up libtool (2.4.6-11) ...
Setting up libpython3.7-dev:armhf (3.7.6-1) ...
Setting up libwebpdemux2:armhf (0.6.1-2) ...
Setting up m4 (1.4.18-4) ...
Setting up libgcc-9-dev:armhf (9.2.1-21+rpi1) ...
Setting up libjs-jquery-ui (1.12.1+dfsg-5) ...
Setting up libfreetype6:armhf (2.10.1-2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11) ...
Setting up dh-strip-nondeterminism (1.6.3-1) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up libpython3-stdlib:armhf (3.7.5-3) ...
Setting up liblbfgsb0:armhf (3.0+dfsg.3-7) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gcc-9 (9.2.1-21+rpi1) ...
Setting up python3.7 (3.7.6-1) ...
Setting up gettext (0.19.8.1-10) ...
Setting up libpython3-dev:armhf (3.7.5-3) ...
Setting up libstdc++-9-dev:armhf (9.2.1-21+rpi1) ...
Setting up python3 (3.7.5-3) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.7-dev (3.7.6-1) ...
Setting up python3-tz (2019.3-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up python3-six (1.13.0-1) ...
Setting up python3-pil:armhf (6.2.1-2) ...
Setting up python3-decorator (4.3.0-1.1) ...
Setting up python3-pyparsing (2.4.2-1) ...
Setting up python3-cycler (0.10.0-2) ...
Setting up g++-9 (9.2.1-21+rpi1) ...
Setting up python3-pubsub (4.0.3-4) ...
Setting up python3-dateutil (2.7.3-3) ...
Setting up python3-lib2to3 (3.8.0-1) ...
Setting up python3-pkg-resources (41.2.0-1) ...
Setting up python3-distutils (3.8.0-1) ...
Setting up dh-python (4.20191017) ...
Setting up python3-setuptools (41.2.0-1) ...
Setting up po-debconf (1.0.21) ...
Setting up python3-dev (3.7.5-3) ...
Setting up python3-kiwisolver (1.0.1-2+b1) ...
Setting up python3-numpy (1:1.17.4-5) ...
Setting up python3-statsmodels-lib:armhf (0.10.2-1) ...
Setting up python3-matplotlib (3.1.2-1) ...
Setting up python3-scipy (1.3.3-3) ...
Setting up python3-pandas-lib (0.25.3+dfsg-4) ...
Setting up python3-patsy (0.5.1-0.2) ...
Setting up python3-pandas (0.25.3+dfsg-4) ...
Setting up python3-statsmodels (0.10.2-1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.7.3) ...
Setting up sbuild-build-depends-tnseq-transit-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-3+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.15.0-58-generic armhf (armv8l)
Toolchain package versions: binutils_2.33.1-5+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-21+rpi1 gcc-9_9.2.1-21+rpi1 libc6-dev_2.29-3+rpi1 libstdc++-9-dev_9.2.1-21+rpi1 libstdc++6_9.2.1-21+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.46 bash_5.0-5 binutils_2.33.1-5+rpi1 binutils-arm-linux-gnueabihf_2.33.1-5+rpi1 binutils-common_2.33.1-5+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bwa_0.7.17-4 bzip2_1.0.8-2 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-21+rpi1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.7.3 debianutils_4.9 dh-autoreconf_19 dh-python_4.20191017 dh-strip-nondeterminism_1.6.3-1 diffutils_1:3.7-3 dirmngr_2.2.17-3+b1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-6 findutils_4.7.0-1 fonts-lyx_2.3.3-2 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-21+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-9_9.2.1-21+rpi1 gcc-9-base_9.2.1-21+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.17-3 gnupg-l10n_2.2.17-3 gnupg-utils_2.2.17-3+b1 gpg_2.2.17-3+b1 gpg-agent_2.2.17-3+b1 gpg-wks-client_2.2.17-3+b1 gpg-wks-server_2.2.17-3+b1 gpgconf_2.2.17-3+b1 gpgsm_2.2.17-3+b1 gpgv_2.2.17-3+b1 grep_3.3-1 groff-base_1.22.4-4 gzip_1.9-3 hostname_3.23 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20190709-2 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.67-1 libasan5_9.2.1-21+rpi1 libassuan0_2.5.3-7 libatomic1_9.2.1-21+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2+b1 libbinutils_2.33.1-5+rpi1 libblas3_3.9.0-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-3+rpi1 libc-dev-bin_2.29-3+rpi1 libc6_2.29-3+rpi1 libc6-dev_2.29-3+rpi1 libcap-ng0_0.7.9-2.1 libcap2_1:2.27-1 libcap2-bin_1:2.27-1 libcc1-0_9.2.1-21+rpi1 libcom-err2_1.45.4-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.7.3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libexpat1-dev_2.2.9-1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.6.3-1 libfreetype6_2.10.1-2 libgcc-9-dev_9.2.1-21+rpi1 libgcc1_1:9.2.1-21+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran5_9.2.1-21+rpi1 libglib2.0-0_2.62.4-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.10-5 libgomp1_9.2.1-21+rpi1 libgpg-error0_1.36-7 libhogweed5_3.5.1+really3.5.1-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libimagequant0_2.12.2-1.1 libisl22_0.22-2 libjbig0_2.1-3.1+b2 libjpeg62-turbo_1:1.5.2-2+b1 libjs-jquery_3.3.1~dfsg-3 libjs-jquery-ui_1.12.1+dfsg-5 libksba8_1.3.5-2 liblapack3_3.9.0-1 liblbfgsb0_3.0+dfsg.3-7 liblcms2-2_2.9-3 libldap-2.4-2_2.4.48+dfsg-1+b2 libldap-common_2.4.48+dfsg-1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-6 libmagic1_1:5.37-6 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.2-1 libncursesw6_6.1+20191019-1 libnettle7_3.5.1+really3.5.1-2 libnpth0_1.6-1 libp11-kit0_0.23.18.1-2 libpam-cap_1:2.27-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-3 libpcre3_2:8.39-12 libperl5.30_5.30.0-9 libpipeline1_1.5.2-1 libpng16-16_1.6.37-1 libpython3-dev_3.7.5-3 libpython3-stdlib_3.7.5-3 libpython3.7_3.7.6-1 libpython3.7-dev_3.7.6-1 libpython3.7-minimal_3.7.6-1 libpython3.7-stdlib_3.7.6-1 libreadline7_7.0-5 libreadline8_8.0-3 librust-bitflags-dev_1.2.1-1 librust-cloudabi+default-dev_0.0.3-1 librust-cloudabi-dev_0.0.3-1 librust-fuchsia-zircon-dev_0.3.3-2 librust-fuchsia-zircon-sys-dev_0.3.3-2 librust-libc-dev_0.2.62-1 librust-phf-codegen-dev_0.7.23-1 librust-phf-generator-dev_0.7.23-1 librust-phf-shared-dev_0.7.23-2+b1 librust-rand-0.5+alloc-dev_0.5.5-2+rpi1 librust-rand-0.5+std-dev_0.5.5-2+rpi1 librust-rand-0.5-dev_0.5.5-2+rpi1 librust-rand-core-0.2+alloc-dev_0.2.2-1 librust-rand-core-0.2+std-dev_0.2.2-1 librust-rand-core-0.2-dev_0.2.2-1 librust-rand-core-dev_0.3.0-1 librust-siphasher-dev_0.2.3-1 librust-winapi-dev_0.3.6-1 librust-winapi-i686-pc-windows-gnu-dev_0.4.0-1 librust-winapi-x86-64-pc-windows-gnu-dev_0.4.0-1 libsasl2-2_2.1.27+dfsg-1+b1 libsasl2-modules-db_2.1.27+dfsg-1+b1 libseccomp2_2.4.2-2+rpi1 libselinux1_2.9-3 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libsqlite3-0_3.30.1-1 libss2_1.45.4-1 libssl1.1_1.1.1d-2 libstdc++-9-dev_9.2.1-21+rpi1 libstdc++6_9.2.1-21+rpi1 libsub-override-perl_0.09-2 libsystemd0_243-8+rpi1 libtasn1-6_4.14-3 libtiff5_4.1.0+git191117-1 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtool_2.4.6-11 libubsan1_9.2.1-21+rpi1 libuchardet0_0.0.6-3 libudev1_243-8+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libwebp6_0.6.1-2 libwebpdemux2_0.6.1-2 libwebpmux3_0.6.1-2 libxml2_2.9.4+dfsg1-8 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.3-17 mime-support_3.64 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_5.7 passwd_1:4.7-2 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 po-debconf_1.0.21 python-matplotlib-data_3.1.2-1 python3_3.7.5-3 python3-cycler_0.10.0-2 python3-dateutil_2.7.3-3 python3-decorator_4.3.0-1.1 python3-dev_3.7.5-3 python3-distutils_3.8.0-1 python3-kiwisolver_1.0.1-2+b1 python3-lib2to3_3.8.0-1 python3-matplotlib_3.1.2-1 python3-minimal_3.7.5-3 python3-numpy_1:1.17.4-5 python3-pandas_0.25.3+dfsg-4 python3-pandas-lib_0.25.3+dfsg-4 python3-patsy_0.5.1-0.2 python3-pil_6.2.1-2 python3-pkg-resources_41.2.0-1 python3-pubsub_4.0.3-4 python3-pyparsing_2.4.2-1 python3-scipy_1.3.3-3 python3-setuptools_41.2.0-1 python3-six_1.13.0-1 python3-statsmodels_0.10.2-1 python3-statsmodels-lib_0.10.2-1 python3-tz_2019.3-1 python3.7_3.7.6-1 python3.7-dev_3.7.6-1 python3.7-minimal_3.7.6-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tnseq-transit-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-1 tar_1.30+dfsg-6 ttf-bitstream-vera_1.10-8 tzdata_2019c-3 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Dec 17 12:09:29 2019 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./tnseq-transit_3.0.1-2.dsc
dpkg-source: info: extracting tnseq-transit in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tnseq-transit_3.0.1.orig.tar.gz
dpkg-source: info: unpacking tnseq-transit_3.0.1-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip_test_requiring_non_existing_input_data.patch

Check disk space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 3.0.1-2+b2

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-21f3cff7-4d01-4099-8570-1a471184d22a
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package tnseq-transit
dpkg-buildpackage: info: source version 3.0.1-2+b2
dpkg-buildpackage: info: source distribution bullseye-staging
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 fakeroot debian/rules clean
dh clean --with python3 --buildsystem=pybuild
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
if [ -e tests_invalid_data/H37Rv.fna ] ; then \
    mv tests_invalid_data/H37Rv.fna tests ; \
    rmdir tests_invalid_data ; \
fi
dh_auto_clean
I: pybuild base:217: python3.7 setup.py clean 
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build' (and everything under it)
'build/bdist.linux-armhf' does not exist -- can't clean it
'build/scripts-3.7' does not exist -- can't clean it
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_autoreconf_clean -O--buildsystem=pybuild
   dh_clean -O--buildsystem=pybuild
 debian/rules build-arch
dh build-arch --with python3 --buildsystem=pybuild
   dh_update_autotools_config -a -O--buildsystem=pybuild
   dh_autoreconf -a -O--buildsystem=pybuild
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
mkdir -p tests_invalid_data
mv tests/H37Rv.fna tests_invalid_data
dh_auto_configure
I: pybuild base:217: python3.7 setup.py config 
running config
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py build 
running build
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytpp
copying src/pytpp/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytpp
copying src/pytpp/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytpp
copying src/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytpp
copying src/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytpp
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/__main__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/images.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
copying src/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/anova.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/gi.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/norm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/normalize.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/pathway_enrichment.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/tnseq_stats.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/utest.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
copying src/pytransit/analysis/zinb.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/convert
copying src/pytransit/convert/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/convert
copying src/pytransit/convert/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/convert
copying src/pytransit/convert/gff_to_prot_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/convert
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export
copying src/pytransit/export/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export
copying src/pytransit/export/base.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export
copying src/pytransit/export/combined_wig.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export
copying src/pytransit/export/igv.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export
copying src/pytransit/export/mean_counts.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export
copying src/pytransit/export/prot_table.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export
running egg_info
creating tnseq_transit.egg-info
writing tnseq_transit.egg-info/PKG-INFO
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing requirements to tnseq_transit.egg-info/requires.txt
writing top-level names to tnseq_transit.egg-info/top_level.txt
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'VERSION'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/GO_associated_Rvs.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/cholesterol_glycerol_combined.dat -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg_covar.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
copying src/pytransit/data/samples_metadata_cg_interactions.txt -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes
   dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:217: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build; python3.7 -m unittest discover -v 

----------------------------------------------------------------------
Ran 0 tests in 0.000s

OK
   create-stamp debian/debhelper-build-stamp
 fakeroot debian/rules binary-arch
dh binary-arch --with python3 --buildsystem=pybuild
   dh_testroot -a -O--buildsystem=pybuild
   dh_prep -a -O--buildsystem=pybuild
   dh_auto_install -a -O--buildsystem=pybuild
I: pybuild base:217: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/tnseq-transit 
running install
running build
running build_py
running egg_info
writing tnseq_transit.egg-info/PKG-INFO
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing requirements to tnseq_transit.egg-info/requires.txt
writing top-level names to tnseq_transit.egg-info/top_level.txt
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'VERSION'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
running install_lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytpp/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytpp/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytpp
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytpp
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytpp/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytpp/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytpp/__pycache__
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/images.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/anova.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/gi.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/norm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/normalize.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/pathway_enrichment.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/tnseq_stats.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/utest.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/zinb.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/base.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/gumbel.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/example.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/tn5gaps.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/binomial.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/griffin.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/resampling.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/hmm.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/rankproduct.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/gi.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/utest.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/normalize.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/pathway_enrichment.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/anova.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/zinb.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/tnseq_stats.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/analysis/__pycache__/norm.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__pycache__
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/convert/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/convert/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/convert
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/convert/gff_to_prot_table.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/convert
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/convert/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/convert/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/convert/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/convert/__pycache__/gff_to_prot_table.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/convert/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/convert/__pycache__/base.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/convert/__pycache__
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export/combined_wig.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export/igv.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export/mean_counts.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export/prot_table.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export/__pycache__/combined_wig.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export/__pycache__/base.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export/__pycache__/igv.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/export/__pycache__/mean_counts.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/__pycache__
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/GO_associated_Rvs-3-11-18.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/GO_associated_Rvs.csv -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/cholesterol_glycerol_combined.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/samples_metadata_cg.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/samples_metadata_cg_covar.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/data/samples_metadata_cg_interactions.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/data
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/genomes
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/__pycache__/__init__.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/__pycache__/transit_tools.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/__pycache__/tnseq_tools.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/__pycache__/norm_tools.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.7/build/pytransit/__pycache__/stat_tools.cpython-37.pyc -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytpp/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytpp/__main__.py to __main__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytpp/tpp_gui.py to tpp_gui.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytpp/tpp_tools.py to tpp_tools.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/__main__.py to __main__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/draw_trash.py to draw_trash.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/fileDisplay.py to fileDisplay.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/images.py to images.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/norm_tools.py to norm_tools.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/qcDisplay.py to qcDisplay.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/stat_tools.py to stat_tools.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/tnseq_tools.py to tnseq_tools.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/transit_gui.py to transit_gui.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/transit_tools.py to transit_tools.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/trash.py to trash.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/view_trash.py to view_trash.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/anova.py to anova.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/base.py to base.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/binomial.py to binomial.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/example.py to example.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/gi.py to gi.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/griffin.py to griffin.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/gumbel.py to gumbel.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/hmm.py to hmm.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/norm.py to norm.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/normalize.py to normalize.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/pathway_enrichment.py to pathway_enrichment.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/rankproduct.py to rankproduct.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/resampling.py to resampling.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/tn5gaps.py to tn5gaps.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/tnseq_stats.py to tnseq_stats.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/utest.py to utest.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/analysis/zinb.py to zinb.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/convert/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/convert/base.py to base.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/convert/gff_to_prot_table.py to gff_to_prot_table.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/__init__.py to __init__.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/base.py to base.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/combined_wig.py to combined_wig.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/igv.py to igv.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/mean_counts.py to mean_counts.cpython-37.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/pytransit/export/prot_table.py to prot_table.cpython-37.pyc
running install_egg_info
Copying tnseq_transit.egg-info to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python3.7/dist-packages/tnseq_transit-3.0.1.egg-info
Skipping SOURCES.txt
running install_scripts
Installing tpp script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
Installing transit script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
   debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mv debian/tnseq-transit/usr/bin/tpp debian/tnseq-transit/usr/bin/transit-tpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installdocs -a -O--buildsystem=pybuild
   dh_installchangelogs -a -O--buildsystem=pybuild
   dh_python3 -a -O--buildsystem=pybuild
   dh_installinit -a -O--buildsystem=pybuild
   dh_installsystemduser -a -O--buildsystem=pybuild
   dh_perl -a -O--buildsystem=pybuild
   dh_link -a -O--buildsystem=pybuild
   dh_strip_nondeterminism -a -O--buildsystem=pybuild
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dpkg-deb: building package 'tnseq-transit' in '../tnseq-transit_3.0.1-2+b2_armhf.deb'.
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dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
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dpkg-buildpackage: info: binary-only upload (no source included)
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tnseq-transit_3.0.1-2+b2_armhf.changes:
---------------------------------------

Format: 1.8
Date: Tue, 17 Dec 2019 12:11:09 +0100
Source: tnseq-transit (3.0.1-2)
Binary: tnseq-transit
Binary-Only: yes
Architecture: armhf
Version: 3.0.1-2+b2
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
 tnseq-transit - statistical calculations of essentiality of genes or genomic regi
Changes:
 tnseq-transit (3.0.1-2+b2) bullseye-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
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Files:
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tnseq-transit_3.0.1-2+b2_armhf.deb
----------------------------------

 new Debian package, version 2.0.
 size 6228072 bytes: control archive=3600 bytes.
    1418 bytes,    29 lines      control              
    7715 bytes,    82 lines      md5sums              
     252 bytes,    12 lines   *  postinst             #!/bin/sh
     401 bytes,    12 lines   *  prerm                #!/bin/sh
 Package: tnseq-transit
 Source: tnseq-transit (3.0.1-2)
 Version: 3.0.1-2+b2
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 36518
 Depends: python3-matplotlib, python3-numpy, python3-pil, python3-pkg-resources, python3-scipy, python3-statsmodels, python3:any, python3-pubsub, python3-wxgtk4.0, bwa
 Breaks: transit
 Replaces: transit
 Provides: transit
 Section: science
 Priority: optional
 Homepage: http://saclab.tamu.edu/essentiality/transit/
 Description: statistical calculations of essentiality of genes or genomic regions
  This is a software that can be used to analyze Tn-Seq datasets. It
  includes various statistical calculations of essentiality of genes or
  genomic regions (including conditional essentiality between 2
  conditions). These methods were developed and tested as a collaboration
  between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)
  .
  TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1
  or Tn5 datasets.
  .
  TRANSIT assumes you have already done pre-processing of raw sequencing
  files (.fastq) and extracted read counts into a .wig formatted file.
  The .wig file should contain the counts at all sites where an insertion
  could take place (including sites with no reads). For Himar1 datasets
  this is all TA sites in the genome. For Tn5 datasets this would be all
  nucleotides in the genome.

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| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

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| Summary                                                                      |
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Build Architecture: armhf
Build-Space: 132548
Build-Time: 71
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 696
Job: tnseq-transit_3.0.1-2
Machine Architecture: armhf
Package: tnseq-transit
Package-Time: 793
Source-Version: 3.0.1-2
Space: 132548
Status: successful
Version: 3.0.1-2+b2
--------------------------------------------------------------------------------
Finished at 2020-01-07T12:00:29Z
Build needed 00:13:13, 132548k disk space