tnseq-transit →
2.3.2-1+b1 →
armhf → 2018-12-26 11:01:57
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| tnseq-transit 2.3.2-1+b1 (armhf) Wed, 26 Dec 2018 10:48:28 +0000 |
+==============================================================================+
Package: tnseq-transit
Version: 2.3.2-1+b1
Source Version: 2.3.2-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/buster-staging-armhf-sbuild-52308f25-b291-41db-8b64-8be7346e2287' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.1 MB]
Fetched 24.4 MB in 28s (873 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'tnseq-transit' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/tnseq-transit.git
Please use:
git clone https://salsa.debian.org/med-team/tnseq-transit.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 18.6 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main tnseq-transit 2.3.2-1 (dsc) [2052 B]
Get:2 http://172.17.0.1/private buster-staging/main tnseq-transit 2.3.2-1 (tar) [18.6 MB]
Get:3 http://172.17.0.1/private buster-staging/main tnseq-transit 2.3.2-1 (diff) [2548 B]
Fetched 18.6 MB in 2s (10.5 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tnseq-transit-Fq0vyY/tnseq-transit-2.3.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tnseq-transit-Fq0vyY' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-4SHP6c/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-4SHP6c/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-4SHP6c/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2999 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-4SHP6c/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n krb5-locales libgpg-error-l10n
libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 49 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15636 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-python, python-all-dev, python-setuptools
Filtered Build-Depends: debhelper (>= 11~), dh-python, python-all-dev, python-setuptools
dpkg-deb: building package 'sbuild-build-depends-tnseq-transit-dummy' in '/<<BUILDDIR>>/resolver-4SHP6c/apt_archive/sbuild-build-depends-tnseq-transit-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-tnseq-transit-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Sources [519 B]
Get:5 copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Packages [600 B]
Fetched 2452 B in 1s (3611 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-4SHP6c/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user '_apt' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-4SHP6c/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install tnseq-transit build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates e2fsprogs-l10n krb5-locales libgpg-error-l10n
libsasl2-modules openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0
libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libpipeline1
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib libsigsegv2 libtool libxml2 m4 man-db mime-support
po-debconf python python-all python-all-dev python-dev python-minimal
python-pkg-resources python-setuptools python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.7 python3.7-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python-doc python-tk python-setuptools-doc
python2-doc python2.7-doc binfmt-support python3-doc python3-tk python3-venv
python3.7-venv python3.7-doc
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libbsd0
libcroco3 libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libglib2.0-0 libicu63 libmagic-mgc libmagic1 libmpdec2 libpipeline1
libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libpython3-stdlib libpython3.7-minimal
libpython3.7-stdlib libsigsegv2 libtool libxml2 m4 man-db mime-support
po-debconf python python-all python-all-dev python-dev python-minimal
python-pkg-resources python-setuptools python2 python2-dev python2-minimal
python2.7 python2.7-dev python2.7-minimal python3 python3-distutils
python3-lib2to3 python3-minimal python3.7 python3.7-minimal
sbuild-build-depends-tnseq-transit-dummy
0 upgraded, 67 newly installed, 0 to remove and 49 not upgraded.
Need to get 59.1 MB of archives.
After this operation, 158 MB of additional disk space will be used.
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Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-5 [394 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-5 [1089 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.15-3 [20.9 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.6-1 [76.8 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.15-5 [1844 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf python2.7 armhf 2.7.15-5 [299 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libpython-stdlib armhf 2.7.15-3 [20.7 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libpython3.7-minimal armhf 3.7.2~rc1-1 [582 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf python3.7-minimal armhf 3.7.2~rc1-1 [1454 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.7.1-3 [36.5 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
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Get:27 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
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Get:29 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
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Get:35 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
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Get:39 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
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Get:45 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-5 [7976 kB]
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Get:48 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
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Get:52 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
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Get:55 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.15-5 [871 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.15-5 [30.8 MB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libpython2-dev armhf 2.7.15-3 [20.8 kB]
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Get:60 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.15-3 [1064 B]
Get:61 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.15-3 [1044 B]
Get:62 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.15-5 [289 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf python2-dev armhf 2.7.15-3 [1216 B]
Get:64 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.15-3 [1192 B]
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Get:66 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 40.6.2-1 [181 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 40.6.2-1 [380 kB]
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Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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Setting up autoconf (2.69-11) ...
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Processing triggers for libc-bin (2.28-2) ...
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-10+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-9+rpi1 gcc-8_8.2.0-9+rpi1 libc6-dev_2.28-2 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~alpha2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-10+rpi1 binutils-arm-linux-gnueabihf_2.31.1-10+rpi1 binutils-common_2.31.1-10+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-9+rpi1 dash_0.5.10.2-2 debconf_1.5.69 debhelper_11.5.4 debianutils_4.8.6 dh-autoreconf_19 dh-python_3.20180927 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dirmngr_2.2.11-1 dmsetup_2:1.02.145-4.1+b5 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.33-0.2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-9+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.2.0-9+rpi1 gcc-8-base_8.2.0-9+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gnupg_2.2.11-1 gnupg-agent_2.2.11-1 gnupg-l10n_2.2.11-1 gnupg-utils_2.2.11-1 gpg_2.2.11-1 gpg-agent_2.2.11-1 gpg-wks-client_2.2.11-1 gpg-wks-server_2.2.11-1 gpgconf_2.2.11-1 gpgsm_2.2.11-1 gpgv_2.2.11-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hostname_3.21 inetutils-ping_2:1.9.4-5 init-system-helpers_1.56 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-2 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libapparmor1_2.13.1-3+b1 libapt-pkg5.0_1.8.0~alpha2 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-9+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-10+rpi1 libblkid1_2.33-0.2 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libc-bin_2.28-2 libc-dev-bin_2.28-2 libc6_2.28-2 libc6-dev_2.28-2 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9+rpi1 libcom-err2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.6-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.12-1 libdebconfclient0_0.245 libdevmapper1.02.1_2:1.02.145-4.1+b5 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.33-0.2 libffi6_3.2.1-9 libfile-stripnondeterminism-perl_1.0.0-1 libgcc-8-dev_8.2.0-9+rpi1 libgcc1_1:8.2.0-9+rpi1 libgcrypt20_1.8.4-4 libgdbm-compat4_1.18.1-2 libgdbm3_1.8.3-14 libgdbm6_1.18.1-2 libglib2.0-0_2.58.1-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.5.19-1+b1 libgomp1_8.2.0-9+rpi1 libgpg-error-l10n_1.32-3 libgpg-error0_1.32-3 libgssapi-krb5-2_1.16.1-1 libhogweed4_3.4.1~rc1-1 libicu63_63.1-5 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.2-2+b1 libisl19_0.20-2 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-2 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1+b1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.33-0.2 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-2 libncurses5_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libnpth0_1.6-1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam0g_1.1.8-3.8 libpcre3_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libplymouth4_0.9.4-1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-5 libpython2.7-dev_2.7.15-5 libpython2.7-minimal_2.7.15-5 libpython2.7-stdlib_2.7.15-5 libpython3-stdlib_3.7.1-3 libpython3.7-minimal_3.7.2~rc1-1 libpython3.7-stdlib_3.7.2~rc1-1 libreadline7_7.0-5 libsasl2-2_2.1.27~rc8-1 libsasl2-modules_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33-0.2 libsqlite3-0_3.26.0-3 libss2_1.44.4-2 libssl1.1_1.1.1a-1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 libsystemd0_239-15+rpi1 libtasn1-6_4.13-3 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtool_2.4.6-6 libubsan1_8.2.0-9+rpi1 libudev1_239-15+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.33-0.2 libxml2_2.9.4+dfsg1-7+b1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.18.20-2+rpi1 login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mime-support_3.61 mount_2.33-0.2 multiarch-support_2.28-2 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.24_5.24.1-7 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python-pkg-resources_40.6.2-1 python-setuptools_40.6.2-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-5 python2.7-dev_2.7.15-5 python2.7-minimal_2.7.15-5 python3_3.7.1-3 python3-distutils_3.7.1-1 python3-lib2to3_3.7.1-1 python3-minimal_3.7.1-3 python3.7_3.7.2~rc1-1 python3.7-minimal_3.7.2~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tnseq-transit-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-15+rpi1 sysvinit-utils_2.93-1 tar_1.30+dfsg-3+rpi1 tzdata_2018g-1 udev_239-15+rpi1 util-linux_2.33-0.2 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Nov 28 17:04:47 2018 UTC
gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1
gpgv: issuer "moeller@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./tnseq-transit_2.3.2-1.dsc
dpkg-source: info: extracting tnseq-transit in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tnseq-transit_2.3.2.orig.tar.gz
dpkg-source: info: unpacking tnseq-transit_2.3.2-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.3.2-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-52308f25-b291-41db-8b64-8be7346e2287
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package tnseq-transit
dpkg-buildpackage: info: source version 2.3.2-1+b1
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2
dh_auto_clean
dh_auto_clean: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_clean: This feature will be removed in compat 12.
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
python setup.py clean -a
running clean
'build/lib.linux-armv7l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find . -name \*.pyc -exec rm {} \+
dh_clean
debian/rules build-arch
dh build-arch --with python2
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_configure: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_configure: This feature will be removed in compat 12.
dh_auto_build -a
dh_auto_build: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_build: This feature will be removed in compat 12.
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
python setup.py build --force
running build
running build_py
creating build
creating build/lib.linux-armv7l-2.7
creating build/lib.linux-armv7l-2.7/pytpp
copying src/pytpp/__init__.py -> build/lib.linux-armv7l-2.7/pytpp
copying src/pytpp/__main__.py -> build/lib.linux-armv7l-2.7/pytpp
copying src/pytpp/tpp_gui.py -> build/lib.linux-armv7l-2.7/pytpp
copying src/pytpp/tpp_tools.py -> build/lib.linux-armv7l-2.7/pytpp
creating build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/__init__.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/__main__.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/draw_trash.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/fileDisplay.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/images.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/norm_tools.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/qcDisplay.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/stat_tools.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/tnseq_tools.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/transit_gui.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/transit_tools.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/trash.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/view_trash.py -> build/lib.linux-armv7l-2.7/pytransit
creating build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/__init__.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/anova.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/base.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/binomial.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/example.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/gi.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/griffin.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/gumbel.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/hmm.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/norm.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/normalize.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/pathway_enrichment.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/rankproduct.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/resampling.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/tn5gaps.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/tnseq_stats.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/utest.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
creating build/lib.linux-armv7l-2.7/pytransit/export
copying src/pytransit/export/__init__.py -> build/lib.linux-armv7l-2.7/pytransit/export
copying src/pytransit/export/base.py -> build/lib.linux-armv7l-2.7/pytransit/export
copying src/pytransit/export/combined_wig.py -> build/lib.linux-armv7l-2.7/pytransit/export
copying src/pytransit/export/igv.py -> build/lib.linux-armv7l-2.7/pytransit/export
copying src/pytransit/export/mean_counts.py -> build/lib.linux-armv7l-2.7/pytransit/export
running egg_info
creating tnseq_transit.egg-info
writing requirements to tnseq_transit.egg-info/requires.txt
writing tnseq_transit.egg-info/PKG-INFO
writing top-level names to tnseq_transit.egg-info/top_level.txt
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
creating build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/GO_associated_Rvs.csv -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/H37Rv.sanger_associated_RVS.csv -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_merged.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep1.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep2.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep3.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_glycerol_combined.dat -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_merged.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep1.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep2.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/samples_metadata_cg.txt -> build/lib.linux-armv7l-2.7/pytransit/data
creating build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/BCG.fna -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/BCG.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37Rv.fna -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37Rv.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.fna -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvBD_mod3.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.fna -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/genomes.html -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.fna -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
dh_auto_test -a
dh_auto_test: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_test: This feature will be removed in compat 12.
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python2
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_auto_install: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_install: This feature will be removed in compat 12.
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
python setup.py install --force --root=/<<PKGBUILDDIR>>/debian/tnseq-transit --no-compile -O0 --install-layout=deb
running install
running build
running build_py
running egg_info
writing requirements to tnseq_transit.egg-info/requires.txt
writing tnseq_transit.egg-info/PKG-INFO
writing top-level names to tnseq_transit.egg-info/top_level.txt
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
running install_lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv7l-2.7/pytpp/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv7l-2.7/pytpp/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv7l-2.7/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv7l-2.7/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/images.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/anova.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/gi.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/norm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/normalize.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/pathway_enrichment.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/tnseq_stats.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/utest.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export
copying build/lib.linux-armv7l-2.7/pytransit/export/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export
copying build/lib.linux-armv7l-2.7/pytransit/export/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export
copying build/lib.linux-armv7l-2.7/pytransit/export/combined_wig.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export
copying build/lib.linux-armv7l-2.7/pytransit/export/igv.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export
copying build/lib.linux-armv7l-2.7/pytransit/export/mean_counts.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/export
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/GO_associated_Rvs.csv -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/H37Rv.sanger_associated_RVS.csv -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/cholesterol_glycerol_combined.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/samples_metadata_cg.txt -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
running install_egg_info
Copying tnseq_transit.egg-info to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/tnseq_transit-2.3.2.egg-info
Skipping SOURCES.txt
running install_scripts
Installing transit script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
Installing tpp script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mv debian/tnseq-transit/usr/bin/tpp debian/tnseq-transit/usr/bin/transit-tpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_python2 -a
I: dh_python2 tools:113: replacing shebang in debian/tnseq-transit/usr/bin/transit
I: dh_python2 tools:113: replacing shebang in debian/tnseq-transit/usr/bin/transit-tpp
I: dh_python2 pydist:220: Cannot find package that provides matplotlib_. Please add package that provides it to Build-Depends or add "matplotlib_ python-matplotlib-" line to debian/pydist-overrides or add proper dependency to Depends by hand and ignore this info.
I: dh_python2 pydist:220: Cannot find package that provides numpy_. Please add package that provides it to Build-Depends or add "numpy_ python-numpy-" line to debian/pydist-overrides or add proper dependency to Depends by hand and ignore this info.
I: dh_python2 pydist:220: Cannot find package that provides pillow_. Please add package that provides it to Build-Depends or add "pillow_ python-pillow-" line to debian/pydist-overrides or add proper dependency to Depends by hand and ignore this info.
I: dh_python2 pydist:220: Cannot find package that provides scipy_. Please add package that provides it to Build-Depends or add "scipy_ python-scipy-" line to debian/pydist-overrides or add proper dependency to Depends by hand and ignore this info.
I: dh_python2 pydist:220: Cannot find package that provides statsmodels_. Please add package that provides it to Build-Depends or add "statsmodels_ python-statsmodels-" line to debian/pydist-overrides or add proper dependency to Depends by hand and ignore this info.
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package tnseq-transit: substitution variable ${python:Versions} unused, but is defined
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'tnseq-transit' in '../tnseq-transit_2.3.2-1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../tnseq-transit_2.3.2-1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-12-26T11:01:47Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
tnseq-transit_2.3.2-1+b1_armhf.changes:
---------------------------------------
Format: 1.8
Date: Wed, 28 Nov 2018 15:04:25 +0100
Source: tnseq-transit (2.3.2-1)
Binary: tnseq-transit
Binary-Only: yes
Architecture: armhf
Version: 2.3.2-1+b1
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
tnseq-transit - statistical calculations of essentiality of genes or genomic regi
Changes:
tnseq-transit (2.3.2-1+b1) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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Files:
81df7b2660f6f2651539de7dcbf4b468 5679 science optional tnseq-transit_2.3.2-1+b1_armhf.buildinfo
03226f09331961e5c3b1e1086099f448 6059160 science optional tnseq-transit_2.3.2-1+b1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
tnseq-transit_2.3.2-1+b1_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 6059160 bytes: control archive=3316 bytes.
1403 bytes, 29 lines control
7042 bytes, 74 lines md5sums
163 bytes, 9 lines * postinst #!/bin/sh
265 bytes, 14 lines * prerm #!/bin/sh
Package: tnseq-transit
Source: tnseq-transit (2.3.2-1)
Version: 2.3.2-1+b1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 35976
Depends: python-pkg-resources, python:any (<< 2.8), python:any (>= 2.7~), python-numpy, python-scipy, python-pillow, python-matplotlib, python-wxgtk3.0
Breaks: transit
Replaces: transit
Provides: transit
Section: science
Priority: optional
Homepage: http://saclab.tamu.edu/essentiality/transit/
Description: statistical calculations of essentiality of genes or genomic regions
This is a software that can be used to analyze Tn-Seq datasets. It
includes various statistical calculations of essentiality of genes or
genomic regions (including conditional essentiality between 2
conditions). These methods were developed and tested as a collaboration
between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)
.
TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1
or Tn5 datasets.
.
TRANSIT assumes you have already done pre-processing of raw sequencing
files (.fastq) and extracted read counts into a .wig formatted file.
The .wig file should contain the counts at all sites where an insertion
could take place (including sites with no reads). For Himar1 datasets
this is all TA sites in the genome. For Tn5 datasets this would be all
nucleotides in the genome.
drwxr-xr-x root/root 0 2018-11-28 14:04 ./
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drwxr-xr-x root/root 0 2018-11-28 14:04 ./usr/bin/
-rwxr-xr-x root/root 401 2018-11-28 14:04 ./usr/bin/transit
-rwxr-xr-x root/root 393 2018-11-28 14:04 ./usr/bin/transit-tpp
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drwxr-xr-x root/root 0 2018-11-28 14:04 ./usr/lib/python2.7/
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-rw-r--r-- root/root 20923 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytpp/tpp_gui.py
-rw-r--r-- root/root 40402 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytpp/tpp_tools.py
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-rw-r--r-- root/root 119 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/__init__.py
-rw-r--r-- root/root 3588 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/__main__.py
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-rw-r--r-- root/root 7590 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/analysis/example.py
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-rw-r--r-- root/root 21198 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/analysis/gumbel.py
-rw-r--r-- root/root 21813 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/analysis/hmm.py
-rw-r--r-- root/root 3900 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/analysis/norm.py
-rw-r--r-- root/root 4345 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/analysis/normalize.py
-rw-r--r-- root/root 16322 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/analysis/pathway_enrichment.py
-rw-r--r-- root/root 13660 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/analysis/rankproduct.py
-rw-r--r-- root/root 23956 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/analysis/resampling.py
-rw-r--r-- root/root 14591 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/analysis/tn5gaps.py
-rw-r--r-- root/root 4545 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/analysis/tnseq_stats.py
-rw-r--r-- root/root 14600 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/analysis/utest.py
drwxr-xr-x root/root 0 2018-11-28 14:04 ./usr/lib/python2.7/dist-packages/pytransit/data/
-rw-r--r-- root/root 285249 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/data/GO_associated_Rvs.csv
-rw-r--r-- root/root 32738 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/data/H37Rv.sanger_associated_RVS.csv
-rw-r--r-- root/root 785384 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/data/cholesterol_H37Rv_merged.wig
-rw-r--r-- root/root 766014 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/data/cholesterol_H37Rv_rep1.wig
-rw-r--r-- root/root 762998 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/data/cholesterol_H37Rv_rep2.wig
-rw-r--r-- root/root 757561 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/data/cholesterol_H37Rv_rep3.wig
-rw-r--r-- root/root 3189503 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/data/cholesterol_glycerol_combined.dat
-rw-r--r-- root/root 789627 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/data/glycerol_H37Rv_merged.wig
-rw-r--r-- root/root 766649 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/data/glycerol_H37Rv_rep1.wig
-rw-r--r-- root/root 779802 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/data/glycerol_H37Rv_rep2.wig
-rw-r--r-- root/root 315 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/data/samples_metadata_cg.txt
-rw-r--r-- root/root 12643 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/draw_trash.py
drwxr-xr-x root/root 0 2018-11-28 14:04 ./usr/lib/python2.7/dist-packages/pytransit/export/
-rw-r--r-- root/root 414 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/export/__init__.py
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-rw-r--r-- root/root 6437 2018-11-09 18:31 ./usr/lib/python2.7/dist-packages/pytransit/export/combined_wig.py
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drwxr-xr-x root/root 0 2018-11-28 14:04 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-11-28 14:04 ./usr/share/doc/tnseq-transit/
-rw-r--r-- root/root 218 2018-11-28 13:59 ./usr/share/doc/tnseq-transit/README.Debian
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-rw-r--r-- root/root 926 2018-11-28 13:59 ./usr/share/doc/tnseq-transit/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 123440
Build-Time: 203
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 537
Job: tnseq-transit_2.3.2-1
Machine Architecture: armhf
Package: tnseq-transit
Package-Time: 799
Source-Version: 2.3.2-1
Space: 123440
Status: successful
Version: 2.3.2-1+b1
--------------------------------------------------------------------------------
Finished at 2018-12-26T11:01:47Z
Build needed 00:13:19, 123440k disc space