tnseq-transit →
2.1.2-1+b2 →
armhf → 2018-08-24 11:39:06
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| tnseq-transit 2.1.2-1+b2 (armhf) Fri, 24 Aug 2018 11:25:57 +0000 |
+==============================================================================+
Package: tnseq-transit
Version: 2.1.2-1+b2
Source Version: 2.1.2-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-a23589e7-939e-4e79-b532-bc255afa101e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.0 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.7 MB]
Fetched 23.7 MB in 27s (889 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'tnseq-transit' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/tnseq-transit.git
Please use:
git clone https://salsa.debian.org/med-team/tnseq-transit.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 18.0 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main tnseq-transit 2.1.2-1 (dsc) [2052 B]
Get:2 http://172.17.0.1/private buster-staging/main tnseq-transit 2.1.2-1 (tar) [18.0 MB]
Get:3 http://172.17.0.1/private buster-staging/main tnseq-transit 2.1.2-1 (diff) [2376 B]
Fetched 18.0 MB in 3s (6773 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tnseq-transit-VnsJxZ/tnseq-transit-2.1.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tnseq-transit-VnsJxZ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-3zRfGN/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-3zRfGN/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-3zRfGN/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2946 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 15 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15689 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), python-all-dev, python-setuptools
Filtered Build-Depends: debhelper (>= 11~), python-all-dev, python-setuptools
dpkg-deb: building package 'sbuild-build-depends-tnseq-transit-dummy' in '/<<BUILDDIR>>/resolver-3zRfGN/apt_archive/sbuild-build-depends-tnseq-transit-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-tnseq-transit-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ Sources [513 B]
Get:5 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ Packages [591 B]
Fetched 2437 B in 1s (3322 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install tnseq-transit build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libnss-systemd
libpam-systemd libsasl2-modules openssl systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1
libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libfreetype6
libglib2.0-0 libgraphite2-3 libharfbuzz0b libicu-le-hb0 libicu60
libmagic-mgc libmagic1 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2-dev libpython2-stdlib libpython2.7
libpython2.7-dev libpython2.7-minimal libpython2.7-stdlib libsigsegv2
libtimedate-perl libtool libxml2 m4 man-db mime-support po-debconf python
python-all python-all-dev python-dev python-minimal python-pkg-resources
python-setuptools python2 python2-dev python2-minimal python2.7
python2.7-dev python2.7-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less
www-browser libmail-box-perl python-doc python-tk python-setuptools-doc
python2-doc python2.7-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libbsd0 libcroco3 libelf1
libexpat1-dev libfile-stripnondeterminism-perl libfreetype6 libglib2.0-0
libgraphite2-3 libharfbuzz0b libicu-le-hb0 libicu60 libmagic-mgc libmagic1
libpipeline1 libpython-all-dev libpython-dev libpython-stdlib libpython2-dev
libpython2-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db
mime-support po-debconf python python-all python-all-dev python-dev
python-minimal python-pkg-resources python-setuptools python2 python2-dev
python2-minimal python2.7 python2.7-dev python2.7-minimal
sbuild-build-depends-tnseq-transit-dummy
The following packages will be upgraded:
libexpat1
1 upgraded, 60 newly installed, 0 to remove and 14 not upgraded.
Need to get 53.7 MB/54.3 MB of archives.
After this operation, 127 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-3zRfGN/apt_archive ./ sbuild-build-depends-tnseq-transit-dummy 0.invalid.0 [880 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-2 [1161 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.15-3 [393 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf python2.7-minimal armhf 2.7.15-3 [1082 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf python2-minimal armhf 2.7.15-3 [41.3 kB]
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Get:12 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.6-1 [76.8 kB]
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Get:15 http://172.17.0.1/private buster-staging/main armhf libpython2-stdlib armhf 2.7.15-3 [20.7 kB]
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Get:17 http://172.17.0.1/private buster-staging/main armhf python2 armhf 2.7.15-3 [41.5 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf python armhf 2.7.15-3 [22.7 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-7 [117 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-1 [771 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-7 [434 kB]
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Get:30 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.62-2 [96.6 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.042-1 [20.1 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
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Get:36 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.56.1-2 [2754 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.8.8-2+rpi1 [860 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-7 [1218 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.3.5 [981 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.6-1 [127 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.15-3 [886 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.15-3 [27.6 MB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libpython2-dev armhf 2.7.15-3 [20.8 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf libpython-dev armhf 2.7.15-3 [20.8 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.15-3 [1064 B]
Get:52 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.15-3 [1044 B]
Get:53 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.15-3 [289 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf python2-dev armhf 2.7.15-3 [1216 B]
Get:55 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.15-3 [1192 B]
Get:56 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.15-3 [1068 B]
Get:57 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 39.2.0-1 [171 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 39.2.0-1 [375 kB]
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Setting up mime-support (3.61) ...
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Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Processing triggers for libc-bin (2.27-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-2+rpi1 dpkg-dev_1.19.0.5 g++-8_8.1.0-12+rpi1 gcc-8_8.1.0-12+rpi1 libc6-dev_2.27-5+rpi1 libstdc++-8-dev_8.1.0-12+rpi1 libstdc++6_8.1.0-12+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.117 apt_1.6.3 autoconf_2.69-11 automake_1:1.16.1-1 autopoint_0.19.8.1-7 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-2+rpi1 binutils-arm-linux-gnueabihf_2.31.1-2+rpi1 binutils-common_2.31.1-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:8.1.0-1+rpi1 cpp-8_8.1.0-12+rpi1 dash_0.5.8-2.10 dbus_1.12.10-1 dbus-user-session_1.12.10-1 debconf_1.5.69 debhelper_11.3.5 debianutils_4.8.6 dh-autoreconf_19 dh-strip-nondeterminism_0.042-1 diffutils_1:3.6-1 dirmngr_2.2.9-1+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 dwz_0.12-2 e2fslibs_1.44.3-1 e2fsprogs_1.44.3-1 e2fsprogs-l10n_1.44.3-1 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20171230-2 g++_4:8.1.0-1+rpi1 g++-8_8.1.0-12+rpi1 gcc_4:8.1.0-1+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-8_8.1.0-12+rpi1 gcc-8-base_8.1.0-12+rpi1 gettext_0.19.8.1-7 gettext-base_0.19.8.1-7 gnupg_2.2.9-1+rpi1 gnupg-agent_2.2.9-1+rpi1 gnupg-l10n_2.2.9-1+rpi1 gnupg-utils_2.2.9-1+rpi1 gpg_2.2.9-1+rpi1 gpg-agent_2.2.9-1+rpi1 gpg-wks-client_2.2.9-1+rpi1 gpg-wks-server_2.2.9-1+rpi1 gpgconf_2.2.9-1+rpi1 gpgsm_2.2.9-1+rpi1 gpgv_2.2.9-1+rpi1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2 hostname_3.20 inetutils-ping_2:1.9.4-3 init-system-helpers_1.51 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.13-8 libapt-pkg5.0_1.6.3 libarchive-zip-perl_1.62-2 libargon2-1_0~20171227-0.1 libasan5_8.1.0-12+rpi1 libassuan0_2.5.1-2 libatomic1_8.1.0-12+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.3-1 libaudit1_1:2.8.3-1 libbinutils_2.31.1-2+rpi1 libblkid1_2.32.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-8.1 libc-bin_2.27-5+rpi1 libc-dev-bin_2.27-5+rpi1 libc6_2.27-5+rpi1 libc6-dev_2.27-5+rpi1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.1.0-12+rpi1 libcom-err2_1.44.3-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.4-2 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.10-1 libdebconfclient0_0.244 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.0.5 libdrm-common_2.4.92-1+rpi1 libdrm2_2.4.92-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libexpat1-dev_2.2.6-1 libext2fs2_1.44.3-1 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.042-1 libfreetype6_2.8.1-2 libgcc-8-dev_8.1.0-12+rpi1 libgcc1_1:8.1.0-12+rpi1 libgcrypt20_1.8.3-1 libgdbm-compat4_1.14.1-6 libgdbm3_1.8.3-14 libgdbm5_1.14.1-6 libglib2.0-0_2.56.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1 libgomp1_8.1.0-12+rpi1 libgpg-error0_1.32-1 libgraphite2-3_1.3.11-2 libharfbuzz0b_1.8.8-2+rpi1 libhogweed4_3.4-1 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.4-2.2 libip4tc0_1.6.2-1.1 libisl19_0.20-1 libjson-c3_0.12.1-1.3 libklibc_2.0.4-14+rpi1 libkmod2_25-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1+20180714-1 libncurses6_6.1+20180714-1 libncursesw5_6.1+20180714-1 libncursesw6_6.1+20180714-1 libnettle6_3.4-1 libnpth0_1.6-1 libnss-systemd_239-7 libp11-kit0_0.23.12-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_239-7 libpam0g_1.1.8-3.7 libpcre3_2:8.39-10 libperl5.24_5.24.1-7 libperl5.26_5.26.2-7 libpipeline1_1.5.0-1 libplymouth4_0.9.3-3 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpython-all-dev_2.7.15-3 libpython-dev_2.7.15-3 libpython-stdlib_2.7.15-3 libpython2-dev_2.7.15-3 libpython2-stdlib_2.7.15-3 libpython2.7_2.7.15-3 libpython2.7-dev_2.7.15-3 libpython2.7-minimal_2.7.15-3 libpython2.7-stdlib_2.7.15-3 libreadline7_7.0-5 libsasl2-2_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules_2.1.27~101-g0780600+dfsg-3.1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3.1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.24.0-1 libss2_1.44.3-1 libssl1.1_1.1.0h-4 libstdc++-8-dev_8.1.0-12+rpi1 libstdc++6_8.1.0-12+rpi1 libsystemd0_239-7 libtasn1-6_4.13-3 libtimedate-perl_2.3000-2 libtinfo5_6.1+20180714-1 libtinfo6_6.1+20180714-1 libtool_2.4.6-2.1 libubsan1_8.1.0-12+rpi1 libudev1_239-7 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libxml2_2.9.4+dfsg1-7 libzstd1_1.3.4+dfsg-3+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-93 man-db_2.8.4-2 mawk_1.3.3-17 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-5+rpi1 nano_2.9.8-1 ncurses-base_6.1+20180714-1 ncurses-bin_6.1+20180714-1 netbase_5.4 openssl_1.1.0h-4 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.26.2-7 perl-base_5.26.2-7 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 pinentry-curses_1.1.0-1 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python_2.7.15-3 python-all_2.7.15-3 python-all-dev_2.7.15-3 python-dev_2.7.15-3 python-minimal_2.7.15-3 python-pkg-resources_39.2.0-1 python-setuptools_39.2.0-1 python2_2.7.15-3 python2-dev_2.7.15-3 python2-minimal_2.7.15-3 python2.7_2.7.15-3 python2.7-dev_2.7.15-3 python2.7-minimal_2.7.15-3 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tnseq-transit-dummy_0.invalid.0 sed_4.5-1 sensible-utils_0.0.12 systemd_239-7 systemd-sysv_239-7 sysvinit-utils_2.88dsf-59.10 tar_1.30+dfsg-2 tzdata_2018e-1 udev_239-7 util-linux_2.32.1-0.1 xz-utils_5.2.2-1.3 zlib1g_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue May 22 15:26:34 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./tnseq-transit_2.1.2-1.dsc
dpkg-source: info: extracting tnseq-transit in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tnseq-transit_2.1.2.orig.tar.gz
dpkg-source: info: unpacking tnseq-transit_2.1.2-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.1.2-1+b2
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-a23589e7-939e-4e79-b532-bc255afa101e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package tnseq-transit
dpkg-buildpackage: info: source version 2.1.2-1+b2
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build tnseq-transit-2.1.2
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2
dh_auto_clean
dh_auto_clean: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_clean: This feature will be removed in compat 12.
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
python setup.py clean -a
running clean
'build/lib.linux-armv7l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find . -name \*.pyc -exec rm {} \+
dh_clean
debian/rules build-arch
dh build-arch --with python2
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_configure: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_configure: This feature will be removed in compat 12.
dh_auto_build -a
dh_auto_build: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_build: This feature will be removed in compat 12.
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
python setup.py build --force
running build
running build_py
creating build
creating build/lib.linux-armv7l-2.7
creating build/lib.linux-armv7l-2.7/pytpp
copying src/pytpp/__init__.py -> build/lib.linux-armv7l-2.7/pytpp
copying src/pytpp/__main__.py -> build/lib.linux-armv7l-2.7/pytpp
copying src/pytpp/tpp_gui.py -> build/lib.linux-armv7l-2.7/pytpp
copying src/pytpp/tpp_tools.py -> build/lib.linux-armv7l-2.7/pytpp
creating build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/__init__.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/__main__.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/draw_trash.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/fileDisplay.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/images.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/norm_tools.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/qcDisplay.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/stat_tools.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/tnseq_tools.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/transit_gui.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/transit_tools.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/trash.py -> build/lib.linux-armv7l-2.7/pytransit
copying src/pytransit/view_trash.py -> build/lib.linux-armv7l-2.7/pytransit
creating build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/__init__.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/base.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/binomial.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/example.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/griffin.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/gumbel.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/hmm.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/norm.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/rankproduct.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/resampling.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
copying src/pytransit/analysis/tn5gaps.py -> build/lib.linux-armv7l-2.7/pytransit/analysis
running egg_info
creating tnseq_transit.egg-info
writing requirements to tnseq_transit.egg-info/requires.txt
writing tnseq_transit.egg-info/PKG-INFO
writing top-level names to tnseq_transit.egg-info/top_level.txt
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
creating build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_merged.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep1.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep2.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep3.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_merged.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep1.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep2.wig -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/gumbel_glycerol_reads_rep1_s10000_b500_t1.dat -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/hmm_glycerol_sites.dat -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/hmm_glycerol_sites_genes.dat -> build/lib.linux-armv7l-2.7/pytransit/data
copying src/pytransit/data/resampling_results_glyc_chol.dat -> build/lib.linux-armv7l-2.7/pytransit/data
creating build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/BCG.fna -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/BCG.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37Rv.fna -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37Rv.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.fna -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvBD_mod3.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.fna -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/genomes.html -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.fna -> build/lib.linux-armv7l-2.7/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.prot_table -> build/lib.linux-armv7l-2.7/pytransit/genomes
dh_auto_test -a
dh_auto_test: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_test: This feature will be removed in compat 12.
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python2
dh_testroot -a
dh_prep -a
dh_auto_install -a
dh_auto_install: Please use the third-party "pybuild" build system instead of python-distutils
dh_auto_install: This feature will be removed in compat 12.
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
python setup.py install --force --root=/<<PKGBUILDDIR>>/debian/tnseq-transit --no-compile -O0 --install-layout=deb
running install
running build
running build_py
running egg_info
writing requirements to tnseq_transit.egg-info/requires.txt
writing tnseq_transit.egg-info/PKG-INFO
writing top-level names to tnseq_transit.egg-info/top_level.txt
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
running install_lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv7l-2.7/pytpp/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv7l-2.7/pytpp/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv7l-2.7/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv7l-2.7/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/images.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv7l-2.7/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/norm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv7l-2.7/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/gumbel_glycerol_reads_rep1_s10000_b500_t1.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/hmm_glycerol_sites.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/hmm_glycerol_sites_genes.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv7l-2.7/pytransit/data/resampling_results_glyc_chol.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv7l-2.7/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
running install_egg_info
Copying tnseq_transit.egg-info to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/tnseq_transit-2.1.2.egg-info
Skipping SOURCES.txt
running install_scripts
Installing transit script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
Installing tpp script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mv debian/tnseq-transit/usr/bin/tpp debian/tnseq-transit/usr/bin/transit-tpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_python2 -a
W: dh_python2:479: Please add dh-python package to Build-Depends
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package tnseq-transit: unused substitution variable ${python:Versions}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'tnseq-transit' in '../tnseq-transit_2.1.2-1+b2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../tnseq-transit_2.1.2-1+b2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build tnseq-transit-2.1.2
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-08-24T11:38:56Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
tnseq-transit_2.1.2-1+b2_armhf.changes:
---------------------------------------
Format: 1.8
Date: Tue, 22 May 2018 16:41:34 +0200
Source: tnseq-transit (2.1.2-1)
Binary: tnseq-transit
Binary-Only: yes
Architecture: armhf
Version: 2.1.2-1+b2
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
tnseq-transit - statistical calculations of essentiality of genes or genomic regi
Changes:
tnseq-transit (2.1.2-1+b2) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
8850c096d8cb4cdfb4eb186ed0ea4934b8729ff3 5542 tnseq-transit_2.1.2-1+b2_armhf.buildinfo
af7bfa80d48fe05f49b3dbb72c83a44a8bdfad1a 6488680 tnseq-transit_2.1.2-1+b2_armhf.deb
Checksums-Sha256:
f3f38635dc05d58ef95bdea5c4c6a78fd22617bc62cd4872505bc8c476fc7ea0 5542 tnseq-transit_2.1.2-1+b2_armhf.buildinfo
fc389aabd1b925db3577389b9f9bf8f250b8b80ab6cc361c69905235d16d4ec1 6488680 tnseq-transit_2.1.2-1+b2_armhf.deb
Files:
0ab0017bd06b477b197cb28b9f5c0465 5542 science optional tnseq-transit_2.1.2-1+b2_armhf.buildinfo
bebba0a1315bb80b05fe366fe94513b1 6488680 science optional tnseq-transit_2.1.2-1+b2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
tnseq-transit_2.1.2-1+b2_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 6488680 bytes: control archive=3016 bytes.
1435 bytes, 29 lines control
6004 bytes, 63 lines md5sums
163 bytes, 9 lines * postinst #!/bin/sh
265 bytes, 14 lines * prerm #!/bin/sh
Package: tnseq-transit
Source: tnseq-transit (2.1.2-1)
Version: 2.1.2-1+b2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 38023
Depends: python (<< 2.8), python (>= 2.7), python-matplotlib, python-numpy, python-pillow, python-pkg-resources, python-scipy, python:any (>= 2.6.6-7~), python-wxgtk3.0
Breaks: transit
Replaces: transit
Provides: transit
Section: science
Priority: optional
Homepage: http://pythonhosted.org/tnseq-transit/transit_overview.html
Description: statistical calculations of essentiality of genes or genomic regions
This is a software that can be used to analyze Tn-Seq datasets. It
includes various statistical calculations of essentiality of genes or
genomic regions (including conditional essentiality between 2
conditions). These methods were developed and tested as a collaboration
between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)
.
TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1
or Tn5 datasets.
.
TRANSIT assumes you have already done pre-processing of raw sequencing
files (.fastq) and extracted read counts into a .wig formatted file.
The .wig file should contain the counts at all sites where an insertion
could take place (including sites with no reads). For Himar1 datasets
this is all TA sites in the genome. For Tn5 datasets this would be all
nucleotides in the genome.
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Build Architecture: armhf
Build-Space: 128912
Build-Time: 209
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 507
Job: tnseq-transit_2.1.2-1
Machine Architecture: armhf
Package: tnseq-transit
Package-Time: 779
Source-Version: 2.1.2-1
Space: 128912
Status: successful
Version: 2.1.2-1+b2
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Finished at 2018-08-24T11:38:56Z
Build needed 00:12:59, 128912k disc space