tnseq-transit →
2.0.2-1+b3 →
armhf → 2017-10-28 17:51:36
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| tnseq-transit 2.0.2-1+b3 (armhf) Sat, 28 Oct 2017 00:58:14 +0000 |
+==============================================================================+
Package: tnseq-transit
Version: 2.0.2-1+b3
Source Version: 2.0.2-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-18e78cf3-89dc-421b-96e0-6914bc6157e7' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.1 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'tnseq-transit' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/tnseq-transit.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/tnseq-transit.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 17.6 MB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main tnseq-transit 2.0.2-1 (dsc) [2072 B]
Get:2 http://172.17.0.1/private buster-staging/main tnseq-transit 2.0.2-1 (tar) [17.6 MB]
Get:3 http://172.17.0.1/private buster-staging/main tnseq-transit 2.0.2-1 (diff) [2300 B]
Fetched 17.6 MB in 3s (4877 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/tnseq-transit-lYOObV/tnseq-transit-2.0.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/tnseq-transit-lYOObV' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-u8YJdO/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-u8YJdO/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-u8YJdO/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-u8YJdO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-u8YJdO/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-u8YJdO/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-u8YJdO/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-u8YJdO/apt_archive ./ Packages [434 B]
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W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libreadline5 libsasl2-modules libssl1.1 openssl
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 73 not upgraded.
Need to get 772 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-u8YJdO/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), python-all-dev, python-setuptools
Filtered Build-Depends: debhelper (>= 10), python-all-dev, python-setuptools
dpkg-deb: building package 'sbuild-build-depends-tnseq-transit-dummy' in '/<<BUILDDIR>>/resolver-u8YJdO/apt_archive/sbuild-build-depends-tnseq-transit-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-tnseq-transit-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-u8YJdO/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-u8YJdO/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-u8YJdO/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-u8YJdO/apt_archive ./ Sources [510 B]
Get:5 copy:/<<BUILDDIR>>/resolver-u8YJdO/apt_archive ./ Packages [593 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install tnseq-transit build dependencies (apt-based resolver)
-------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates libreadline5 libsasl2-modules openssl
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57
libmagic-mgc libmagic1 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db
mime-support po-debconf python python-all python-all-dev python-dev
python-minimal python-pkg-resources python-setuptools python2.7
python2.7-dev python2.7-minimal
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc less www-browser
libmail-box-perl python-doc python-tk python-setuptools-doc python2.7-doc
binfmt-support
Recommended packages:
curl | wget | lynx-cur libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbsd0 libcroco3 libexpat1
libexpat1-dev libfile-stripnondeterminism-perl libglib2.0-0 libicu57
libmagic-mgc libmagic1 libpipeline1 libpython-all-dev libpython-dev
libpython-stdlib libpython2.7 libpython2.7-dev libpython2.7-minimal
libpython2.7-stdlib libsigsegv2 libtimedate-perl libtool libxml2 m4 man-db
mime-support po-debconf python python-all python-all-dev python-dev
python-minimal python-pkg-resources python-setuptools python2.7
python2.7-dev python2.7-minimal sbuild-build-depends-tnseq-transit-dummy
0 upgraded, 50 newly installed, 0 to remove and 73 not upgraded.
Need to get 52.0 MB of archives.
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Get:2 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.8.6-2 [95.8 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 9.0.14 [178 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.4.2-1 [24.2 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libpython2.7-minimal armhf 2.7.14-2 [393 kB]
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Get:9 http://172.17.0.1/private buster-staging/main armhf python-minimal armhf 2.7.14-1 [40.7 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libexpat1 armhf 2.2.3-1 [67.1 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libpython2.7-stdlib armhf 2.7.14-2 [1854 kB]
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Get:16 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.32-1 [225 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.32-1 [105 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.32-1 [63.7 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libicu57 armhf 57.1-8 [7411 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-5 [609 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.11-1 [29.3 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
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Get:25 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
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Get:30 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.039-1 [18.2 kB]
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Get:36 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf debhelper all 10.9.2 [979 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libexpat1-dev armhf 2.2.3-1 [120 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libpython2.7 armhf 2.7.14-2 [904 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libpython2.7-dev armhf 2.7.14-2 [27.6 MB]
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Get:44 http://172.17.0.1/private buster-staging/main armhf libpython-all-dev armhf 2.7.14-1 [958 B]
Get:45 http://172.17.0.1/private buster-staging/main armhf python-all armhf 2.7.14-1 [942 B]
Get:46 http://172.17.0.1/private buster-staging/main armhf python2.7-dev armhf 2.7.14-2 [295 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf python-dev armhf 2.7.14-1 [1130 B]
Get:48 http://172.17.0.1/private buster-staging/main armhf python-all-dev armhf 2.7.14-1 [964 B]
Get:49 http://172.17.0.1/private buster-staging/main armhf python-pkg-resources all 36.2.7-2 [169 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf python-setuptools all 36.2.7-2 [302 kB]
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Preparing to unpack .../30-python-all_2.7.14-1_armhf.deb ...
Unpacking python-all (2.7.14-1) ...
Selecting previously unselected package python2.7-dev.
Preparing to unpack .../31-python2.7-dev_2.7.14-2_armhf.deb ...
Unpacking python2.7-dev (2.7.14-2) ...
Selecting previously unselected package python-dev.
Preparing to unpack .../32-python-dev_2.7.14-1_armhf.deb ...
Unpacking python-dev (2.7.14-1) ...
Selecting previously unselected package python-all-dev.
Preparing to unpack .../33-python-all-dev_2.7.14-1_armhf.deb ...
Unpacking python-all-dev (2.7.14-1) ...
Selecting previously unselected package python-pkg-resources.
Preparing to unpack .../34-python-pkg-resources_36.2.7-2_all.deb ...
Unpacking python-pkg-resources (36.2.7-2) ...
Selecting previously unselected package python-setuptools.
Preparing to unpack .../35-python-setuptools_36.2.7-2_all.deb ...
Unpacking python-setuptools (36.2.7-2) ...
Selecting previously unselected package sbuild-build-depends-tnseq-transit-dummy.
Preparing to unpack .../36-sbuild-build-depends-tnseq-transit-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-tnseq-transit-dummy (0.invalid.0) ...
Setting up libexpat1:armhf (2.2.3-1) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up mime-support (3.60) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.11-1) ...
Setting up groff-base (1.22.3-9) ...
Setting up libglib2.0-0:armhf (2.54.1-1) ...
No schema files found: doing nothing.
Setting up gettext-base (0.19.8.1-4) ...
Setting up libpipeline1:armhf (1.4.2-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-8) ...
Setting up libbsd0:armhf (0.8.6-2) ...
Setting up libxml2:armhf (2.9.4+dfsg1-5) ...
Setting up libmagic-mgc (1:5.32-1) ...
Setting up libmagic1:armhf (1:5.32-1) ...
Setting up libcroco3:armhf (0.6.12-1) ...
Processing triggers for libc-bin (2.24-14) ...
Setting up autotools-dev (20161112.1) ...
Setting up libexpat1-dev:armhf (2.2.3-1) ...
Setting up bsdmainutils (9.0.14) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpython2.7-stdlib:armhf (2.7.14-2) ...
Setting up autopoint (0.19.8.1-4) ...
Setting up libfile-stripnondeterminism-perl (0.039-1) ...
Setting up gettext (0.19.8.1-4) ...
Setting up python2.7 (2.7.14-2) ...
Setting up autoconf (2.69-11) ...
Setting up file (1:5.32-1) ...
Setting up libpython-stdlib:armhf (2.7.14-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libpython2.7:armhf (2.7.14-2) ...
Setting up automake (1:1.15.1-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython2.7-dev:armhf (2.7.14-2) ...
Setting up python2.7-dev (2.7.14-2) ...
Setting up python (2.7.14-1) ...
Setting up libtool (2.4.6-2) ...
Setting up libpython-dev:armhf (2.7.14-1) ...
Setting up po-debconf (1.0.20) ...
Setting up python-dev (2.7.14-1) ...
Setting up libpython-all-dev:armhf (2.7.14-1) ...
Setting up python-pkg-resources (36.2.7-2) ...
Setting up python-all (2.7.14-1) ...
Setting up python-setuptools (36.2.7-2) ...
Setting up python-all-dev (2.7.14-1) ...
Setting up dh-strip-nondeterminism (0.039-1) ...
Setting up debhelper (10.9.2) ...
Setting up dh-autoreconf (14) ...
Setting up sbuild-build-depends-tnseq-transit-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-14) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.29.1-3+rpi1 dpkg-dev_1.18.24 g++-7_7.2.0-5 gcc-7_7.2.0-5 libc6-dev_2.24-14 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch
Package versions: adduser_3.116 apt_1.5 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20161112.1 base-files_10+rpi1 base-passwd_3.5.44 bash_4.4-5 binutils_2.29.1-3+rpi1 binutils-arm-linux-gnueabihf_2.29.1-3+rpi1 binutils-common_2.29.1-3+rpi1 bsdmainutils_9.0.14 bsdutils_1:2.29.2-5 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 coreutils_8.26-3 cpio_2.11+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.2.0-5 dash_0.5.8-2.5 debconf_1.5.63 debhelper_10.9.2 debianutils_4.8.2 dh-autoreconf_14 dh-strip-nondeterminism_0.039-1 diffutils_1:3.6-1 dirmngr_2.2.1-1 dmsetup_2:1.02.142-1 dpkg_1.18.24 dpkg-dev_1.18.24 e2fslibs_1.43.6-1 e2fsprogs_1.43.6-1 fakeroot_1.22-1 fdisk_2.29.2-5 file_1:5.32-1 findutils_4.6.0+git+20170729-2 g++_4:7.2.0-1d1 g++-7_7.2.0-5 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-5-base_5.4.1-4 gcc-7_7.2.0-5 gcc-7-base_7.2.0-5 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gnupg_2.2.1-1 gnupg-agent_2.2.1-1 gnupg-l10n_2.2.1-1 gnupg-utils_2.2.1-1 gpg_2.2.1-1 gpg-agent_2.2.1-1 gpg-wks-client_2.2.1-1 gpg-wks-server_2.2.1-1 gpgconf_2.2.1-1 gpgsm_2.2.1-1 gpgv_2.2.1-1 grep_3.1-2 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init-system-helpers_1.49 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_24-1 libacl1_2.2.52-3 libapparmor1_2.11.0-11 libapt-pkg5.0_1.5 libarchive-zip-perl_1.59-1 libasan4_7.2.0-5 libassuan0_2.4.3-3 libatomic1_7.2.0-5 libattr1_1:2.4.47-2 libaudit-common_1:2.7.7-1 libaudit1_1:2.7.7-1+b1 libbinutils_2.29.1-3+rpi1 libblkid1_2.29.2-5 libbsd0_0.8.6-2 libbz2-1.0_1.0.6-8.1 libc-bin_2.24-14 libc-dev-bin_2.24-14 libc6_2.24-14 libc6-dev_2.24-14 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcc1-0_7.2.0-5 libcilkrts5_7.2.0-5 libcomerr2_1.43.6-1 libcroco3_0.6.12-1 libcryptsetup4_2:1.7.5-1 libdb5.3_5.3.28-13.1 libdbus-1-3_1.11.16+really1.10.22-1 libdebconfclient0_0.230 libdevmapper1.02.1_2:1.02.142-1 libdpkg-perl_1.18.24 libdrm-common_2.4.82-1+rpi1 libdrm2_2.4.82-1+rpi1 libexpat1_2.2.3-1 libexpat1-dev_2.2.3-1 libfakeroot_1.22-1 libfdisk1_2.29.2-5 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.039-1 libgcc-7-dev_7.2.0-5 libgcc1_1:7.2.0-5 libgcrypt20_1.7.9-1 libgdbm3_1.8.3-14 libglib2.0-0_2.54.1-1 libgmp10_2:6.1.2+dfsg-1 libgnutls30_3.5.15-2 libgomp1_7.2.0-5 libgpg-error0_1.27-3 libhogweed4_3.3-2 libicu57_57.1-8 libidn11_1.33-2 libidn2-0_2.0.2-5 libip4tc0_1.6.1-2 libisl15_0.18-1 libklibc_2.0.4-9+rpi1 libkmod2_24-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-1 libmagic1_1:5.32-1 libmount1_2.29.2-5 libmpc3_1.0.3-2 libmpfr4_3.1.6-1 libncurses5_6.0+20170902-1 libncursesw5_6.0+20170902-1 libnettle6_3.3-2 libnih-dbus1_1.0.3-8 libnih1_1.0.3-8 libnpth0_1.5-2 libp11-kit0_0.23.7-3 libpam-modules_1.1.8-3.6 libpam-modules-bin_1.1.8-3.6 libpam-runtime_1.1.8-3.6 libpam0g_1.1.8-3.6 libpcre3_2:8.39-4 libperl5.24_5.24.1-7 libperl5.26_5.26.0-8 libpipeline1_1.4.2-1 libplymouth4_0.9.3-1 libpng16-16_1.6.32-3 libprocps6_2:3.3.12-3 libpython-all-dev_2.7.14-1 libpython-dev_2.7.14-1 libpython-stdlib_2.7.14-1 libpython2.7_2.7.14-2 libpython2.7-dev_2.7.14-2 libpython2.7-minimal_2.7.14-2 libpython2.7-stdlib_2.7.14-2 libreadline5_5.2+dfsg-3 libreadline7_7.0-3 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.11-1 libsmartcols1_2.29.2-5 libsqlite3-0_3.20.1-1 libss2_1.43.6-1 libssl1.1_1.1.0f-5 libstdc++-7-dev_7.2.0-5 libstdc++6_7.2.0-5 libsystemd0_234-3 libtasn1-6_4.12-2.1 libtimedate-perl_2.3000-2 libtinfo5_6.0+20170902-1 libtool_2.4.6-2 libubsan0_7.2.0-5 libudev1_234-3 libunistring2_0.9.7-2 libustr-1.0-1_1.0.4-6 libuuid1_2.29.2-5 libxml2_2.9.4+dfsg1-5 linux-base_4.5 linux-libc-dev_4.9.30-2+deb9u2+rpi1+stretch login_1:4.4-4.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.7.6.1-2 mawk_1.3.3-17 mime-support_3.60 mount_2.29.2-5 mountall_2.54 multiarch-support_2.24-14 ncurses-base_6.0+20170902-1 ncurses-bin_6.0+20170902-1 openssl_1.1.0f-5 passwd_1:4.4-4.1 patch_2.7.5-1 perl_5.26.0-8 perl-base_5.26.0-8 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.0-8 pinentry-curses_1.0.0-2 plymouth_0.9.3-1 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.14-1 python-all_2.7.14-1 python-all-dev_2.7.14-1 python-dev_2.7.14-1 python-minimal_2.7.14-1 python-pkg-resources_36.2.7-2 python-setuptools_36.2.7-2 python2.7_2.7.14-2 python2.7-dev_2.7.14-2 python2.7-minimal_2.7.14-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-tnseq-transit-dummy_0.invalid.0 sed_4.4-1 sensible-utils_0.0.10 systemd_234-3 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2017b-2 udev_234-3 util-linux_2.29.2-5 xz-utils_5.2.2-1.3 zlib1g_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Fri Mar 3 20:26:50 2017 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./tnseq-transit_2.0.2-1.dsc
dpkg-source: info: extracting tnseq-transit in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking tnseq-transit_2.0.2.orig.tar.gz
dpkg-source: info: unpacking tnseq-transit_2.0.2-1.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.0.2-1+b3
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-18e78cf3-89dc-421b-96e0-6914bc6157e7
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package tnseq-transit
dpkg-buildpackage: info: source version 2.0.2-1+b3
dpkg-buildpackage: info: source distribution buster-staging
dpkg-source --before-build tnseq-transit-2.0.2
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2
dh_auto_clean
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
python setup.py clean -a
running clean
'build/lib.linux-armv8l-2.7' does not exist -- can't clean it
'build/bdist.linux-armv8l' does not exist -- can't clean it
'build/scripts-2.7' does not exist -- can't clean it
find . -name \*.pyc -exec rm {} \+
dh_autoreconf_clean
dh_clean
debian/rules build-arch
dh build-arch --with python2
dh_update_autotools_config -a
dh_autoreconf -a
dh_auto_configure -a
dh_auto_build -a
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
python setup.py build --force
running build
running build_py
creating build
creating build/lib.linux-armv8l-2.7
creating build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/fileDisplay.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/qcDisplay.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/draw_trash.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/transit_tools.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/tnseq_tools.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/view_trash.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/trash.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/images.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/norm_tools.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/__init__.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/transit_gui.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/stat_tools.py -> build/lib.linux-armv8l-2.7/pytransit
copying src/pytransit/__main__.py -> build/lib.linux-armv8l-2.7/pytransit
creating build/lib.linux-armv8l-2.7/pytpp
copying src/pytpp/tpp_gui.py -> build/lib.linux-armv8l-2.7/pytpp
copying src/pytpp/__init__.py -> build/lib.linux-armv8l-2.7/pytpp
copying src/pytpp/tpp_tools.py -> build/lib.linux-armv8l-2.7/pytpp
copying src/pytpp/__main__.py -> build/lib.linux-armv8l-2.7/pytpp
creating build/lib.linux-armv8l-2.7/pytransit/analysis
copying src/pytransit/analysis/rankproduct.py -> build/lib.linux-armv8l-2.7/pytransit/analysis
copying src/pytransit/analysis/hmm.py -> build/lib.linux-armv8l-2.7/pytransit/analysis
copying src/pytransit/analysis/tn5gaps.py -> build/lib.linux-armv8l-2.7/pytransit/analysis
copying src/pytransit/analysis/base.py -> build/lib.linux-armv8l-2.7/pytransit/analysis
copying src/pytransit/analysis/gumbel.py -> build/lib.linux-armv8l-2.7/pytransit/analysis
copying src/pytransit/analysis/binomial.py -> build/lib.linux-armv8l-2.7/pytransit/analysis
copying src/pytransit/analysis/__init__.py -> build/lib.linux-armv8l-2.7/pytransit/analysis
copying src/pytransit/analysis/griffin.py -> build/lib.linux-armv8l-2.7/pytransit/analysis
copying src/pytransit/analysis/resampling.py -> build/lib.linux-armv8l-2.7/pytransit/analysis
copying src/pytransit/analysis/example.py -> build/lib.linux-armv8l-2.7/pytransit/analysis
running egg_info
creating tnseq_transit.egg-info
writing requirements to tnseq_transit.egg-info/requires.txt
writing tnseq_transit.egg-info/PKG-INFO
writing top-level names to tnseq_transit.egg-info/top_level.txt
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
creating build/lib.linux-armv8l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_merged.wig -> build/lib.linux-armv8l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep1.wig -> build/lib.linux-armv8l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep2.wig -> build/lib.linux-armv8l-2.7/pytransit/data
copying src/pytransit/data/cholesterol_H37Rv_rep3.wig -> build/lib.linux-armv8l-2.7/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_merged.wig -> build/lib.linux-armv8l-2.7/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep1.wig -> build/lib.linux-armv8l-2.7/pytransit/data
copying src/pytransit/data/glycerol_H37Rv_rep2.wig -> build/lib.linux-armv8l-2.7/pytransit/data
copying src/pytransit/data/gumbel_glycerol_reads_rep1_s10000_b500_t1.dat -> build/lib.linux-armv8l-2.7/pytransit/data
copying src/pytransit/data/hmm_glycerol_sites.dat -> build/lib.linux-armv8l-2.7/pytransit/data
copying src/pytransit/data/hmm_glycerol_sites_genes.dat -> build/lib.linux-armv8l-2.7/pytransit/data
copying src/pytransit/data/resampling_results_glyc_chol.dat -> build/lib.linux-armv8l-2.7/pytransit/data
creating build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/BCG.fna -> build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/BCG.prot_table -> build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37Rv.fna -> build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37Rv.prot_table -> build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.fna -> build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvBD.prot_table -> build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvBD_mod3.prot_table -> build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.fna -> build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/H37RvMA2.prot_table -> build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/genomes.html -> build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.fna -> build/lib.linux-armv8l-2.7/pytransit/genomes
copying src/pytransit/genomes/mc2_155_tamu.prot_table -> build/lib.linux-armv8l-2.7/pytransit/genomes
dh_auto_test -a
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --with python2
dh_testroot -a
dh_prep -a
dh_auto_install -a
pyversions: missing X(S)-Python-Version in control file, fall back to debian/pyversions
pyversions: missing debian/pyversions file, fall back to supported versions
python setup.py install --force --root=/<<PKGBUILDDIR>>/debian/tnseq-transit --no-compile -O0 --install-layout=deb
running install
running build
running build_py
running egg_info
writing requirements to tnseq_transit.egg-info/requires.txt
writing tnseq_transit.egg-info/PKG-INFO
writing top-level names to tnseq_transit.egg-info/top_level.txt
writing dependency_links to tnseq_transit.egg-info/dependency_links.txt
writing entry points to tnseq_transit.egg-info/entry_points.txt
reading manifest file 'tnseq_transit.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching '*.html' under directory 'src/pytransit/doc/build/html'
warning: no files found matching '*.png' under directory 'src/pytransit/doc/build/html/_images'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_modules'
warning: no files found matching '*' under directory 'src/pytransit/doc/build/html/_static'
writing manifest file 'tnseq_transit.egg-info/SOURCES.txt'
running install_lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv8l-2.7/pytransit/fileDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv8l-2.7/pytransit/qcDisplay.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv8l-2.7/pytransit/draw_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv8l-2.7/pytransit/transit_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv8l-2.7/pytransit/tnseq_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/data/hmm_glycerol_sites_genes.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/data/glycerol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/data/glycerol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/data/cholesterol_H37Rv_merged.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/data/cholesterol_H37Rv_rep1.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/data/resampling_results_glyc_chol.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/data/cholesterol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/data/cholesterol_H37Rv_rep3.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/data/gumbel_glycerol_reads_rep1_s10000_b500_t1.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/data/glycerol_H37Rv_rep2.wig -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/data/hmm_glycerol_sites.dat -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/data
copying build/lib.linux-armv8l-2.7/pytransit/view_trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv8l-2.7/pytransit/trash.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv8l-2.7/pytransit/images.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv8l-2.7/pytransit/norm_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv8l-2.7/pytransit/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv8l-2.7/pytransit/analysis/rankproduct.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv8l-2.7/pytransit/analysis/hmm.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv8l-2.7/pytransit/analysis/tn5gaps.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv8l-2.7/pytransit/analysis/base.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv8l-2.7/pytransit/analysis/gumbel.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv8l-2.7/pytransit/analysis/binomial.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv8l-2.7/pytransit/analysis/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv8l-2.7/pytransit/analysis/griffin.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv8l-2.7/pytransit/analysis/resampling.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv8l-2.7/pytransit/analysis/example.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/analysis
copying build/lib.linux-armv8l-2.7/pytransit/transit_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
copying build/lib.linux-armv8l-2.7/pytransit/stat_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/H37Rv.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/BCG.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/H37RvMA2.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/H37Rv.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/H37RvBD.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/BCG.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/H37RvBD_mod3.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/H37RvBD.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/H37RvMA2.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/genomes.html -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/mc2_155_tamu.fna -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/genomes/mc2_155_tamu.prot_table -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit/genomes
copying build/lib.linux-armv8l-2.7/pytransit/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytransit
creating /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv8l-2.7/pytpp/tpp_gui.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv8l-2.7/pytpp/__init__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv8l-2.7/pytpp/tpp_tools.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
copying build/lib.linux-armv8l-2.7/pytpp/__main__.py -> /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/pytpp
running install_egg_info
Copying tnseq_transit.egg-info to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/lib/python2.7/dist-packages/tnseq_transit-2.0.2.egg-info
Skipping SOURCES.txt
running install_scripts
Installing transit script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
Installing tpp script to /<<PKGBUILDDIR>>/debian/tnseq-transit/usr/bin
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
mv debian/tnseq-transit/usr/bin/tpp debian/tnseq-transit/usr/bin/transit-tpp
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_python2 -a
W: dh_python2:479: Please add dh-python package to Build-Depends
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_missing -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: package tnseq-transit: unused substitution variable ${python:Versions}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'tnseq-transit' in '../tnseq-transit_2.0.2-1+b3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../tnseq-transit_2.0.2-1+b3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build tnseq-transit-2.0.2
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2017-10-28T01:01:49Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
tnseq-transit_2.0.2-1+b3_armhf.changes:
---------------------------------------
Format: 1.8
Date: Fri, 03 Mar 2017 16:06:48 +0100
Source: tnseq-transit (2.0.2-1)
Binary: tnseq-transit
Binary-Only: yes
Architecture: armhf
Version: 2.0.2-1+b3
Distribution: buster-staging
Urgency: low
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Description:
tnseq-transit - statistical calculations of essentiality of genes or genomic regi
Changes:
tnseq-transit (2.0.2-1+b3) buster-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
Checksums-Sha1:
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54c9e23f6677346ec13190b8229c9915af0114bd 5101 tnseq-transit_2.0.2-1_armhf.buildinfo
Checksums-Sha256:
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2d77cd0a4fb250290dc77f96410e8ae391246abfe8c686805265108c9a556b87 5101 tnseq-transit_2.0.2-1_armhf.buildinfo
Files:
e501031b618a3522a61ce91a0c52328b 6480784 science optional tnseq-transit_2.0.2-1+b3_armhf.deb
1ac9d67e76341ca450fdd0202a069073 5101 science optional tnseq-transit_2.0.2-1_armhf.buildinfo
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
tnseq-transit_2.0.2-1+b3_armhf.deb
----------------------------------
new debian package, version 2.0.
size 6480784 bytes: control archive=3100 bytes.
1435 bytes, 29 lines control
5911 bytes, 62 lines md5sums
163 bytes, 9 lines * postinst #!/bin/sh
263 bytes, 14 lines * prerm #!/bin/sh
Package: tnseq-transit
Source: tnseq-transit (2.0.2-1)
Version: 2.0.2-1+b3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 37953
Depends: python (<< 2.8), python (>= 2.7), python-matplotlib, python-numpy, python-pillow, python-pkg-resources, python-scipy, python:any (>= 2.6.6-7~), python-wxgtk3.0
Breaks: transit
Replaces: transit
Provides: transit
Section: science
Priority: optional
Homepage: http://pythonhosted.org/tnseq-transit/transit_overview.html
Description: statistical calculations of essentiality of genes or genomic regions
This is a software that can be used to analyze Tn-Seq datasets. It
includes various statistical calculations of essentiality of genes or
genomic regions (including conditional essentiality between 2
conditions). These methods were developed and tested as a collaboration
between the Sassetti lab (UMass) and the Ioerger lab (Texas A&M)
.
TRANSIT is capable of analyzing TnSeq libraries constructed with Himar1
or Tn5 datasets.
.
TRANSIT assumes you have already done pre-processing of raw sequencing
files (.fastq) and extracted read counts into a .wig formatted file.
The .wig file should contain the counts at all sites where an insertion
could take place (including sites with no reads). For Himar1 datasets
this is all TA sites in the genome. For Tn5 datasets this would be all
nucleotides in the genome.
drwxr-xr-x root/root 0 2017-03-03 15:06 ./
drwxr-xr-x root/root 0 2017-03-03 15:06 ./usr/
drwxr-xr-x root/root 0 2017-03-03 15:06 ./usr/bin/
-rwxr-xr-x root/root 400 2017-03-03 15:06 ./usr/bin/transit
-rwxr-xr-x root/root 392 2017-03-03 15:06 ./usr/bin/transit-tpp
drwxr-xr-x root/root 0 2017-03-03 15:06 ./usr/lib/
drwxr-xr-x root/root 0 2017-03-03 15:06 ./usr/lib/python2.7/
drwxr-xr-x root/root 0 2017-03-03 15:06 ./usr/lib/python2.7/dist-packages/
drwxr-xr-x root/root 0 2017-03-03 15:06 ./usr/lib/python2.7/dist-packages/pytpp/
-rw-r--r-- root/root 1 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytpp/__init__.py
-rw-r--r-- root/root 3834 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytpp/__main__.py
-rw-r--r-- root/root 14846 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytpp/tpp_gui.py
-rw-r--r-- root/root 26266 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytpp/tpp_tools.py
drwxr-xr-x root/root 0 2017-03-03 15:06 ./usr/lib/python2.7/dist-packages/pytransit/
-rw-r--r-- root/root 131 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/__init__.py
-rw-r--r-- root/root 1888 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/__main__.py
drwxr-xr-x root/root 0 2017-03-03 15:06 ./usr/lib/python2.7/dist-packages/pytransit/analysis/
-rw-r--r-- root/root 722 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/analysis/__init__.py
-rw-r--r-- root/root 10322 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/analysis/base.py
-rw-r--r-- root/root 19930 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/analysis/binomial.py
-rw-r--r-- root/root 7065 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/analysis/example.py
-rw-r--r-- root/root 8743 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/analysis/griffin.py
-rw-r--r-- root/root 17890 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/analysis/gumbel.py
-rw-r--r-- root/root 20062 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/analysis/hmm.py
-rw-r--r-- root/root 15558 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/analysis/rankproduct.py
-rw-r--r-- root/root 17874 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/analysis/resampling.py
-rw-r--r-- root/root 15292 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/analysis/tn5gaps.py
drwxr-xr-x root/root 0 2017-03-03 15:06 ./usr/lib/python2.7/dist-packages/pytransit/data/
-rw-r--r-- root/root 785384 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/data/cholesterol_H37Rv_merged.wig
-rw-r--r-- root/root 766014 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/data/cholesterol_H37Rv_rep1.wig
-rw-r--r-- root/root 762998 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/data/cholesterol_H37Rv_rep2.wig
-rw-r--r-- root/root 757561 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/data/cholesterol_H37Rv_rep3.wig
-rw-r--r-- root/root 789627 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/data/glycerol_H37Rv_merged.wig
-rw-r--r-- root/root 766649 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/data/glycerol_H37Rv_rep1.wig
-rw-r--r-- root/root 779802 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/data/glycerol_H37Rv_rep2.wig
-rw-r--r-- root/root 292627 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/data/gumbel_glycerol_reads_rep1_s10000_b500_t1.dat
-rw-r--r-- root/root 4784934 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/data/hmm_glycerol_sites.dat
-rw-r--r-- root/root 311591 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/data/hmm_glycerol_sites_genes.dat
-rw-r--r-- root/root 362430 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/data/resampling_results_glyc_chol.dat
-rw-r--r-- root/root 9939 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/draw_trash.py
-rw-r--r-- root/root 9530 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/fileDisplay.py
drwxr-xr-x root/root 0 2017-03-03 15:06 ./usr/lib/python2.7/dist-packages/pytransit/genomes/
-rw-r--r-- root/root 4437109 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/genomes/BCG.fna
-rw-r--r-- root/root 375487 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/genomes/BCG.prot_table
-rw-r--r-- root/root 4474634 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/genomes/H37Rv.fna
-rw-r--r-- root/root 392954 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/genomes/H37Rv.prot_table
-rw-r--r-- root/root 4474815 2016-08-19 19:13 ./usr/lib/python2.7/dist-packages/pytransit/genomes/H37RvBD.fna
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 128192
Build-Time: 56
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 137
Job: tnseq-transit_2.0.2-1
Machine Architecture: armhf
Package: tnseq-transit
Package-Time: 215
Source-Version: 2.0.2-1
Space: 128192
Status: successful
Version: 2.0.2-1+b3
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Finished at 2017-10-28T01:01:49Z
Build needed 00:03:35, 128192k disk space