stacks →
1.44-2 →
armhf → 2016-12-28 07:26:47
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd.raspbian.org
+==============================================================================+
| stacks 1.44-2 (armhf) Wed, 28 Dec 2016 06:58:56 +0000 |
+==============================================================================+
Package: stacks
Version: 1.44-2
Source Version: 1.44-2
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-e1fde8eb-8926-4f69-b957-849ee1d6f443' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9659 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.6 MB]
Fetched 21.3 MB in 26s (805 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'stacks' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/stacks.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/stacks.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 915 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main stacks 1.44-2 (dsc) [2082 B]
Get:2 http://172.17.0.1/private stretch-staging/main stacks 1.44-2 (tar) [904 kB]
Get:3 http://172.17.0.1/private stretch-staging/main stacks 1.44-2 (diff) [8732 B]
Fetched 915 kB in 0s (2287 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/stacks-2VvxWu/stacks-1.44' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/stacks-2VvxWu' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-mGOWkR/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-mGOWkR/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-mGOWkR/gpg/trustdb.gpg: trustdb created
gpg: key 5FBC947B34E39F26: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 5FBC947B34E39F26: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 5FBC947B34E39F26: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ Packages [430 B]
Fetched 2106 B in 0s (3479 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 44 not upgraded.
Need to get 772 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [772 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 772 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12988 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 10), python, zlib1g-dev, libbam-dev, libsparsehash-dev (>= 2.0), samtools
Filtered Build-Depends: debhelper (>= 10), python, zlib1g-dev, libbam-dev, libsparsehash-dev (>= 2.0), samtools
dpkg-deb: building package 'sbuild-build-depends-stacks-dummy' in '/<<BUILDDIR>>/resolver-mGOWkR/apt_archive/sbuild-build-depends-stacks-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-stacks-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ Sources [525 B]
Get:5 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ Packages [605 B]
Fetched 2463 B in 0s (3941 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install stacks build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n libfuse2 manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbam-dev libbsd0 libcroco3
libcurl3-gnutls libexpat1 libffi6 libfile-stripnondeterminism-perl
libglib2.0-0 libgnutls30 libgssapi-krb5-2 libhogweed4 libhts1 libicu57
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2
libldap-common libmagic-mgc libmagic1 libnettle6 libnghttp2-14 libp11-kit0
libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsparsehash-dev
libssh2-1 libssl1.1 libtasn1-6 libtimedate-perl libtool libunistring0
libxml2 m4 man-db mime-support po-debconf python python-minimal python2.7
python2.7-minimal samtools zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff
gnutls-bin krb5-doc krb5-user libtool-doc gfortran | fortran95-compiler
gcj-jdk less www-browser libmail-box-perl python-doc python-tk python2.7-doc
binfmt-support
Recommended packages:
curl | wget | lynx-cur ca-certificates libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libsasl2-modules libltdl-dev xml-core
libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils debhelper
dh-autoreconf dh-strip-nondeterminism file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libbam-dev libbsd0 libcroco3
libcurl3-gnutls libexpat1 libffi6 libfile-stripnondeterminism-perl
libglib2.0-0 libgnutls30 libgssapi-krb5-2 libhogweed4 libhts1 libicu57
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 libldap-2.4-2
libldap-common libmagic-mgc libmagic1 libnettle6 libnghttp2-14 libp11-kit0
libpipeline1 libpython-stdlib libpython2.7-minimal libpython2.7-stdlib
librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsparsehash-dev
libssh2-1 libssl1.1 libtasn1-6 libtimedate-perl libtool libunistring0
libxml2 m4 man-db mime-support po-debconf python python-minimal python2.7
python2.7-minimal samtools sbuild-build-depends-stacks-dummy zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 65 newly installed, 0 to remove and 43 not upgraded.
Need to get 27.4 MB/27.9 MB of archives.
After this operation, 93.1 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-mGOWkR/apt_archive ./ sbuild-build-depends-stacks-dummy 0.invalid.0 [816 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-9 [1005 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf zlib1g armhf 1:1.2.8.dfsg-4 [81.6 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.6.1-2 [1014 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-minimal armhf 2.7.13~rc1-1 [389 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf python2.7-minimal armhf 2.7.13~rc1-1 [1177 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf python-minimal armhf 2.7.11-2 [40.3 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf mime-support all 3.60 [36.7 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libssl1.1 armhf 1.1.0c-2 [1101 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf libpython2.7-stdlib armhf 2.7.13~rc1-1 [1829 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf python2.7 armhf 2.7.13~rc1-1 [285 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libpython-stdlib armhf 2.7.11-2 [19.8 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf python armhf 2.7.11-2 [153 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-2 [221 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-2 [104 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-2 [63.1 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libgnutls30 armhf 3.5.7-3 [816 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.15-1 [57.9 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.15-1 [115 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.15-1 [262 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.15-1 [132 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libsasl2-modules-db armhf 2.1.27~101-g0780600+dfsg-1 [66.7 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libsasl2-2 armhf 2.1.27~101-g0780600+dfsg-1 [97.9 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf libldap-common all 2.4.44+dfsg-2+rpi1 [84.5 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf libldap-2.4-2 armhf 2.4.44+dfsg-2+rpi1 [195 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-5 [7427 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [804 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-5 [733 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:46 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-2 [2527 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.2 [826 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libbam-dev armhf 0.1.19-2 [109 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.17.0-1 [70.1 kB]
Get:55 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.7.0-1 [125 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libcurl3-gnutls armhf 7.50.1-1 [248 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf libhts1 armhf 1.3.2-1+rpi1 [215 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf libsparsehash-dev all 2.0.2-1 [76.9 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf samtools armhf 1.3.1-3 [220 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-4 [198 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up zlib1g:armhf (1:1.2.8.dfsg-4) ...
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Unpacking libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-1) ...
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Unpacking libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-1) ...
Selecting previously unselected package libldap-common.
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Selecting previously unselected package libldap-2.4-2:armhf.
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Unpacking libldap-2.4-2:armhf (2.4.44+dfsg-2+rpi1) ...
Selecting previously unselected package libicu57:armhf.
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Unpacking libicu57:armhf (57.1-5) ...
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Unpacking libsigsegv2:armhf (2.10-5) ...
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Unpacking m4 (1.4.17-5) ...
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Unpacking libglib2.0-0:armhf (2.50.2-2) ...
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Unpacking libcroco3:armhf (0.6.11-2) ...
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Unpacking samtools (1.3.1-3) ...
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Unpacking sbuild-build-depends-stacks-dummy (0.invalid.0) ...
Setting up libsparsehash-dev (2.0.2-1) ...
Setting up libnettle6:armhf (3.3-1) ...
Setting up libexpat1:armhf (2.2.0-1) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libnghttp2-14:armhf (1.17.0-1) ...
Setting up mime-support (3.60) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up libldap-common (2.4.44+dfsg-2+rpi1) ...
Setting up groff-base (1.22.3-9) ...
Setting up libsasl2-modules-db:armhf (2.1.27~101-g0780600+dfsg-1) ...
Setting up libsasl2-2:armhf (2.1.27~101-g0780600+dfsg-1) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up m4 (1.4.17-5) ...
Setting up libicu57:armhf (57.1-5) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2.1) ...
Setting up libtasn1-6:armhf (4.9-4) ...
Setting up libmagic-mgc (1:5.29-2) ...
Setting up libmagic1:armhf (1:5.29-2) ...
Setting up libhogweed4:armhf (3.3-1) ...
Setting up libssh2-1:armhf (1.7.0-1) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
Setting up autotools-dev (20161112.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Setting up libssl1.1:armhf (1.1.0c-2) ...
Setting up libbam-dev (0.1.19-2) ...
Setting up libffi6:armhf (3.2.1-6) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up bsdmainutils (9.0.12) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up libpython2.7-stdlib:armhf (2.7.13~rc1-1) ...
Setting up autopoint (0.19.8.1-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-4) ...
Setting up libfile-stripnondeterminism-perl (0.028-1) ...
Setting up libglib2.0-0:armhf (2.50.2-2) ...
No schema files found: doing nothing.
Setting up python2.7 (2.7.13~rc1-1) ...
Setting up autoconf (2.69-10) ...
Setting up file (1:5.29-2) ...
Setting up libkrb5support0:armhf (1.15-1) ...
Setting up libcroco3:armhf (0.6.11-2) ...
Setting up libpython-stdlib:armhf (2.7.11-2) ...
Setting up libp11-kit0:armhf (0.23.2-5) ...
Setting up automake (1:1.15-5) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up man-db (2.7.6.1-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python (2.7.11-2) ...
Setting up libtool (2.4.6-2) ...
Setting up libk5crypto3:armhf (1.15-1) ...
Setting up gettext (0.19.8.1-1) ...
Setting up libgnutls30:armhf (3.5.7-3) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libldap-2.4-2:armhf (2.4.44+dfsg-2+rpi1) ...
Setting up libkrb5-3:armhf (1.15-1) ...
Setting up po-debconf (1.0.20) ...
Setting up libgssapi-krb5-2:armhf (1.15-1) ...
Setting up libcurl3-gnutls:armhf (7.50.1-1) ...
Setting up libhts1:armhf (1.3.2-1+rpi1) ...
Setting up samtools (1.3.1-3) ...
Setting up dh-strip-nondeterminism (0.028-1) ...
Setting up debhelper (10.2.2) ...
Setting up dh-autoreconf (12) ...
Setting up sbuild-build-depends-stacks-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-7+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27.51.20161127-1 dpkg-dev_1.18.15 g++-6_6.2.1-5+rpi1 gcc-6_6.2.1-5+rpi1 libc6-dev_2.24-7+rpi1 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.4~beta1 autoconf_2.69-10 automake_1:1.15-5 autopoint_0.19.8.1-1 autotools-dev_20161112.1 base-files_9.7+rpi1 base-passwd_3.5.41 bash_4.4-2 binutils_2.27.51.20161127-1 bsdmainutils_9.0.12 bsdutils_1:2.29-1 build-essential_12.2 bzip2_1.0.6-8 coreutils_8.25-2 cpio_2.11+dfsg-6 cpp_4:6.1.1-1 cpp-6_6.2.1-5+rpi1 dash_0.5.8-2.3 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.2 debianutils_4.8.1 dh-autoreconf_12 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dmsetup_2:1.02.136-1 dpkg_1.18.15 dpkg-dev_1.18.15 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-2 findutils_4.6.0+git+20161106-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.1-5+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.1-5+rpi1 gcc-6-base_6.2.1-5+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gnupg_2.1.16-2 gnupg-agent_2.1.16-2 gnupg-l10n_2.1.16-2 gpgv_2.1.16-2 grep_2.26-1 groff-base_1.22.3-9 gzip_1.6-5 hostname_3.18 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_23-1 libacl1_2.2.52-3 libapparmor1_2.10.95-6 libapt-pkg5.0_1.4~beta1 libarchive-zip-perl_1.59-1 libasan3_6.2.1-5+rpi1 libassuan0_2.4.3-2 libatomic1_6.2.1-5+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libbam-dev_0.1.19-2 libblkid1_2.29-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libc-bin_2.24-7+rpi1 libc-dev-bin_2.24-7+rpi1 libc6_2.24-7+rpi1 libc6-dev_2.24-7+rpi1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.1-5+rpi1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.3-2 libcurl3-gnutls_7.50.1-1 libdb5.3_5.3.28-12 libdbus-1-3_1.10.14-1 libdebconfclient0_0.218 libdevmapper1.02.1_2:1.02.136-1 libdpkg-perl_1.18.15 libdrm2_2.4.74-1 libexpat1_2.2.0-1 libfakeroot_1.21-2 libfdisk1_2.29-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.2.1-5+rpi1 libgcc1_1:6.2.1-5+rpi1 libgcrypt20_1.7.3-2 libgdbm3_1.8.3-14 libglib2.0-0_2.50.2-2 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.7-3 libgomp1_6.2.1-5+rpi1 libgpg-error0_1.25-1 libgssapi-krb5-2_1.15-1 libhogweed4_3.3-1 libhts1_1.3.2-1+rpi1 libicu57_57.1-5 libidn11_1.33-1 libip4tc0_1.6.0-4 libisl15_0.17.1-1 libk5crypto3_1.15-1 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_23-1 libkrb5-3_1.15-1 libkrb5support0_1.15-1 libksba8_1.3.5-2 libldap-2.4-2_2.4.44+dfsg-2+rpi1 libldap-common_2.4.44+dfsg-2+rpi1 liblz4-1_0.0~r131-2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-2 libmagic1_1:5.29-2 libmount1_2.29-1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnettle6_3.3-1 libnghttp2-14_1.17.0-1 libnpth0_1.3-1 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpcre3_2:8.39-2 libperl5.24_5.24.1~rc4-1 libpipeline1_1.4.1-2 libpng12-0_1.2.54-6 libprocps6_2:3.3.12-3 libpython-stdlib_2.7.11-2 libpython2.7-minimal_2.7.13~rc1-1 libpython2.7-stdlib_2.7.13~rc1-1 libreadline7_7.0-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-1 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-1 libseccomp2_2.3.1-2.1 libselinux1_2.6-3 libsemanage-common_2.6-1 libsemanage1_2.6-1 libsepol1_2.6-1 libsigsegv2_2.10-5 libsmartcols1_2.29-1 libsparsehash-dev_2.0.2-1 libsqlite3-0_3.15.2-1 libss2_1.43.3-1 libssh2-1_1.7.0-1 libssl1.1_1.1.0c-2 libstdc++-6-dev_6.2.1-5+rpi1 libstdc++6_6.2.1-5+rpi1 libsystemd0_232-6 libtasn1-6_4.9-4 libtimedate-perl_2.3000-2 libtinfo5_6.0+20160917-1 libtool_2.4.6-2 libubsan0_6.2.1-5+rpi1 libudev1_232-6 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-6 libuuid1_2.29-1 libxml2_2.9.4+dfsg1-2.1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.3 lsb-base_9.20161125+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.6.1-2 manpages_4.08-1 mawk_1.3.3-17 mime-support_3.60 mount_2.29-1 multiarch-support_2.24-7+rpi1 nano_2.7.1-1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 passwd_1:4.2-3.3 patch_2.7.5-1 perl_5.24.1~rc4-1 perl-base_5.24.1~rc4-1 perl-modules-5.24_5.24.1~rc4-1 pinentry-curses_0.9.7-9 po-debconf_1.0.20 procps_2:3.3.12-3 python_2.7.11-2 python-minimal_2.7.11-2 python2.7_2.7.13~rc1-1 python2.7-minimal_2.7.13~rc1-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 samtools_1.3.1-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-stacks-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_232-6 systemd-sysv_232-6 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1.1 tzdata_2016j-2 udev_232-6 util-linux_2.29-1 xz-utils_5.2.2-1.2 zlib1g_1:1.2.8.dfsg-4 zlib1g-dev_1:1.2.8.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sat Dec 17 16:41:01 2016 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./stacks_1.44-2.dsc
dpkg-source: info: extracting stacks in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking stacks_1.44.orig.tar.gz
dpkg-source: info: unpacking stacks_1.44-2.debian.tar.xz
dpkg-source: info: applying constants.php.patch
dpkg-source: info: applying email-settings.patch
dpkg-source: info: applying script-exe-paths
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-e1fde8eb-8926-4f69-b957-849ee1d6f443
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package stacks
dpkg-buildpackage: info: source version 1.44-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build stacks-1.44
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python2
dh_testdir
dh_auto_clean
dh_autoreconf_clean
debian/rules override_dh_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f ./constants.php
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules build-arch
dh build-arch --with python2
dh_testdir -a
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- --enable-sparsehash --enable-bam \
--with-bam-include-path=/usr/include/samtools \
--with-bam-lib-path=/usr/lib
./configure --build=arm-linux-gnueabihf --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --libexecdir=\${prefix}/lib/arm-linux-gnueabihf --disable-maintainer-mode --disable-dependency-tracking --enable-sparsehash --enable-bam --with-bam-include-path=/usr/include/samtools --with-bam-lib-path=/usr/lib
configure: WARNING: unrecognized options: --disable-maintainer-mode, --with-bam-include-path, --with-bam-lib-path
checking for a BSD-compatible install... /usr/bin/install -c
checking whether build environment is sane... yes
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checking for gcc... gcc
checking whether we are using the GNU C compiler... yes
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checking whether g++ supports C++11 features by default... yes
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checking how to run the C preprocessor... gcc -E
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checking for egrep... /bin/grep -E
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checking that generated files are newer than configure... done
configure: creating ./config.status
config.status: creating Makefile
config.status: creating config.h
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configure: WARNING: unrecognized options: --disable-maintainer-mode, --with-bam-include-path, --with-bam-lib-path
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dh_auto_build -a
make -j4
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make all-recursive
make[2]: Entering directory '/<<PKGBUILDDIR>>'
Making all in htslib
make[3]: Entering directory '/<<PKGBUILDDIR>>/htslib'
echo '/* Empty config.h generated by Makefile */' > config.h
echo '#define HTS_VERSION "1.3.1"' > version.h
gcc -g -Wall -O2 -I. -c -o md5.o md5.c
gcc -g -Wall -O2 -I. -c -o regidx.o regidx.c
gcc -g -Wall -O2 -I. -c -o sam.o sam.c
gcc -g -Wall -O2 -I. -c -o synced_bcf_reader.o synced_bcf_reader.c
gcc -g -Wall -O2 -I. -c -o vcf_sweep.o vcf_sweep.c
gcc -g -Wall -O2 -I. -c -o tbx.o tbx.c
gcc -g -Wall -O2 -I. -c -o vcf.o vcf.c
gcc -g -Wall -O2 -I. -c -o vcfutils.o vcfutils.c
gcc -g -Wall -O2 -I. -c -o cram/cram_codecs.o cram/cram_codecs.c
gcc -g -Wall -O2 -I. -c -o cram/cram_decode.o cram/cram_decode.c
gcc -g -Wall -O2 -I. -c -o cram/cram_encode.o cram/cram_encode.c
gcc -g -Wall -O2 -I. -c -o cram/cram_external.o cram/cram_external.c
gcc -g -Wall -O2 -I. -c -o cram/cram_index.o cram/cram_index.c
gcc -g -Wall -O2 -I. -c -o cram/cram_io.o cram/cram_io.c
gcc -g -Wall -O2 -I. -c -o cram/cram_samtools.o cram/cram_samtools.c
gcc -g -Wall -O2 -I. -c -o cram/cram_stats.o cram/cram_stats.c
gcc -g -Wall -O2 -I. -c -o cram/files.o cram/files.c
gcc -g -Wall -O2 -I. -c -o cram/mFILE.o cram/mFILE.c
gcc -g -Wall -O2 -I. -c -o cram/open_trace_file.o cram/open_trace_file.c
gcc -g -Wall -O2 -I. -c -o cram/pooled_alloc.o cram/pooled_alloc.c
gcc -g -Wall -O2 -I. -c -o cram/rANS_static.o cram/rANS_static.c
gcc -g -Wall -O2 -I. -c -o cram/sam_header.o cram/sam_header.c
gcc -g -Wall -O2 -I. -c -o cram/string_alloc.o cram/string_alloc.c
gcc -g -Wall -O2 -I. -c -o cram/thread_pool.o cram/thread_pool.c
gcc -g -Wall -O2 -I. -c -o cram/vlen.o cram/vlen.c
gcc -g -Wall -O2 -I. -c -o cram/zfio.o cram/zfio.c
gcc -g -Wall -O2 -I. -c -o kfunc.o kfunc.c
gcc -g -Wall -O2 -I. -c -o knetfile.o knetfile.c
gcc -g -Wall -O2 -I. -c -o kstring.o kstring.c
gcc -g -Wall -O2 -I. -c -o bgzf.o bgzf.c
gcc -g -Wall -O2 -I. -c -o faidx.o faidx.c
gcc -g -Wall -O2 -I. -c -o hfile.o hfile.c
gcc -g -Wall -O2 -I. -c -o hfile_net.o hfile_net.c
gcc -g -Wall -O2 -I. -c -o hts.o hts.c
ar -rc libhts.a kfunc.o knetfile.o kstring.o bgzf.o faidx.o hfile.o hfile_net.o hts.o md5.o regidx.o sam.o synced_bcf_reader.o vcf_sweep.o tbx.o vcf.o vcfutils.o cram/cram_codecs.o cram/cram_decode.o cram/cram_encode.o cram/cram_external.o cram/cram_index.o cram/cram_io.o cram/cram_samtools.o cram/cram_stats.o cram/files.o cram/mFILE.o cram/open_trace_file.o cram/pooled_alloc.o cram/rANS_static.o cram/sam_header.o cram/string_alloc.o cram/thread_pool.o cram/vlen.o cram/zfio.o
ranlib libhts.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/htslib'
Making all in .
make[3]: Entering directory '/<<PKGBUILDDIR>>'
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-ustacks.o `test -f 'src/ustacks.cc' || echo './'`src/ustacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-stacks.o `test -f 'src/stacks.cc' || echo './'`src/stacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-mstack.o `test -f 'src/mstack.cc' || echo './'`src/mstack.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-mst.o `test -f 'src/mst.cc' || echo './'`src/mst.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-cmb.o `test -f 'src/cmb.cc' || echo './'`src/cmb.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-DNASeq.o `test -f 'src/DNASeq.cc' || echo './'`src/DNASeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-DNANSeq.o `test -f 'src/DNANSeq.cc' || echo './'`src/DNANSeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-models.o `test -f 'src/models.cc' || echo './'`src/models.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-kmers.o `test -f 'src/kmers.cc' || echo './'`src/kmers.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-aln_utils.o `test -f 'src/aln_utils.cc' || echo './'`src/aln_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/ustacks-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/pstacks-pstacks.o `test -f 'src/pstacks.cc' || echo './'`src/pstacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/pstacks-stacks.o `test -f 'src/stacks.cc' || echo './'`src/stacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/pstacks-mstack.o `test -f 'src/mstack.cc' || echo './'`src/mstack.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/pstacks-DNANSeq.o `test -f 'src/DNANSeq.cc' || echo './'`src/DNANSeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/pstacks-DNASeq.o `test -f 'src/DNASeq.cc' || echo './'`src/DNASeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/pstacks-models.o `test -f 'src/models.cc' || echo './'`src/models.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/pstacks-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/pstacks-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/estacks-estacks.o `test -f 'src/estacks.cc' || echo './'`src/estacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/estacks-stacks.o `test -f 'src/stacks.cc' || echo './'`src/stacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/estacks-mstack.o `test -f 'src/mstack.cc' || echo './'`src/mstack.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/estacks-models.o `test -f 'src/models.cc' || echo './'`src/models.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/estacks-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/estacks-DNASeq.o `test -f 'src/DNASeq.cc' || echo './'`src/DNASeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/estacks-DNANSeq.o `test -f 'src/DNANSeq.cc' || echo './'`src/DNANSeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/estacks-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks-cstacks.o `test -f 'src/cstacks.cc' || echo './'`src/cstacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks-stacks.o `test -f 'src/stacks.cc' || echo './'`src/stacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks-locus.o `test -f 'src/locus.cc' || echo './'`src/locus.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks-kmers.o `test -f 'src/kmers.cc' || echo './'`src/kmers.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks-aln_utils.o `test -f 'src/aln_utils.cc' || echo './'`src/aln_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks-DNASeq.o `test -f 'src/DNASeq.cc' || echo './'`src/DNASeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks-DNANSeq.o `test -f 'src/DNANSeq.cc' || echo './'`src/DNANSeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/cstacks-sql_utilities.o `test -f 'src/sql_utilities.cc' || echo './'`src/sql_utilities.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks-sstacks.o `test -f 'src/sstacks.cc' || echo './'`src/sstacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks-stacks.o `test -f 'src/stacks.cc' || echo './'`src/stacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks-locus.o `test -f 'src/locus.cc' || echo './'`src/locus.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks-kmers.o `test -f 'src/kmers.cc' || echo './'`src/kmers.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks-aln_utils.o `test -f 'src/aln_utils.cc' || echo './'`src/aln_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks-DNASeq.o `test -f 'src/DNASeq.cc' || echo './'`src/DNASeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks-DNANSeq.o `test -f 'src/DNANSeq.cc' || echo './'`src/DNANSeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/sstacks-sql_utilities.o `test -f 'src/sql_utilities.cc' || echo './'`src/sql_utilities.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-rxstacks.o `test -f 'src/rxstacks.cc' || echo './'`src/rxstacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-stacks.o `test -f 'src/stacks.cc' || echo './'`src/stacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-locus.o `test -f 'src/locus.cc' || echo './'`src/locus.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-DNANSeq.o `test -f 'src/DNANSeq.cc' || echo './'`src/DNANSeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-DNASeq.o `test -f 'src/DNASeq.cc' || echo './'`src/DNASeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-mst.o `test -f 'src/mst.cc' || echo './'`src/mst.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-models.o `test -f 'src/models.cc' || echo './'`src/models.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-aln_utils.o `test -f 'src/aln_utils.cc' || echo './'`src/aln_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-sql_utilities.o `test -f 'src/sql_utilities.cc' || echo './'`src/sql_utilities.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/rxstacks-MetaPopInfo.o `test -f 'src/MetaPopInfo.cc' || echo './'`src/MetaPopInfo.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/hstacks-hstacks.o `test -f 'src/hstacks.cc' || echo './'`src/hstacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/hstacks-stacks.o `test -f 'src/stacks.cc' || echo './'`src/stacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/hstacks-locus.o `test -f 'src/locus.cc' || echo './'`src/locus.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/hstacks-kmers.o `test -f 'src/kmers.cc' || echo './'`src/kmers.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/hstacks-DNASeq.o `test -f 'src/DNASeq.cc' || echo './'`src/DNASeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/hstacks-DNANSeq.o `test -f 'src/DNANSeq.cc' || echo './'`src/DNANSeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/hstacks-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/hstacks-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/hstacks-sql_utilities.o `test -f 'src/sql_utilities.cc' || echo './'`src/sql_utilities.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags-process_radtags.o `test -f 'src/process_radtags.cc' || echo './'`src/process_radtags.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags-log_utils.o `test -f 'src/log_utils.cc' || echo './'`src/log_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags-write.o `test -f 'src/write.cc' || echo './'`src/write.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags-clean.o `test -f 'src/clean.cc' || echo './'`src/clean.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags-file_io.o `test -f 'src/file_io.cc' || echo './'`src/file_io.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_radtags-renz.o `test -f 'src/renz.cc' || echo './'`src/renz.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads-process_shortreads.o `test -f 'src/process_shortreads.cc' || echo './'`src/process_shortreads.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads-clean.o `test -f 'src/clean.cc' || echo './'`src/clean.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads-file_io.o `test -f 'src/file_io.cc' || echo './'`src/file_io.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads-log_utils.o `test -f 'src/log_utils.cc' || echo './'`src/log_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads-write.o `test -f 'src/write.cc' || echo './'`src/write.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads-kmers.o `test -f 'src/kmers.cc' || echo './'`src/kmers.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/process_shortreads-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmer_filter-kmer_filter.o `test -f 'src/kmer_filter.cc' || echo './'`src/kmer_filter.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmer_filter-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmer_filter-write.o `test -f 'src/write.cc' || echo './'`src/write.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmer_filter-kmers.o `test -f 'src/kmers.cc' || echo './'`src/kmers.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/kmer_filter-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter-clone_filter.o `test -f 'src/clone_filter.cc' || echo './'`src/clone_filter.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter-kmers.o `test -f 'src/kmers.cc' || echo './'`src/kmers.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter-write.o `test -f 'src/write.cc' || echo './'`src/write.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter-clean.o `test -f 'src/clean.cc' || echo './'`src/clean.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter-file_io.o `test -f 'src/file_io.cc' || echo './'`src/file_io.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/clone_filter-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-genotypes.o `test -f 'src/genotypes.cc' || echo './'`src/genotypes.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-catalog_utils.o `test -f 'src/catalog_utils.cc' || echo './'`src/catalog_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-log_utils.o `test -f 'src/log_utils.cc' || echo './'`src/log_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-stacks.o `test -f 'src/stacks.cc' || echo './'`src/stacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-locus.o `test -f 'src/locus.cc' || echo './'`src/locus.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-DNASeq.o `test -f 'src/DNASeq.cc' || echo './'`src/DNASeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-DNANSeq.o `test -f 'src/DNANSeq.cc' || echo './'`src/DNANSeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-aln_utils.o `test -f 'src/aln_utils.cc' || echo './'`src/aln_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-genotype_dictionaries.o `test -f 'src/genotype_dictionaries.cc' || echo './'`src/genotype_dictionaries.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-sql_utilities.o `test -f 'src/sql_utilities.cc' || echo './'`src/sql_utilities.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-renz.o `test -f 'src/renz.cc' || echo './'`src/renz.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/genotypes-MetaPopInfo.o `test -f 'src/MetaPopInfo.cc' || echo './'`src/MetaPopInfo.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-populations.o `test -f 'src/populations.cc' || echo './'`src/populations.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-catalog_utils.o `test -f 'src/catalog_utils.cc' || echo './'`src/catalog_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-log_utils.o `test -f 'src/log_utils.cc' || echo './'`src/log_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-stacks.o `test -f 'src/stacks.cc' || echo './'`src/stacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-locus.o `test -f 'src/locus.cc' || echo './'`src/locus.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-DNASeq.o `test -f 'src/DNASeq.cc' || echo './'`src/DNASeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-DNANSeq.o `test -f 'src/DNANSeq.cc' || echo './'`src/DNANSeq.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-aln_utils.o `test -f 'src/aln_utils.cc' || echo './'`src/aln_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-genotype_dictionaries.o `test -f 'src/genotype_dictionaries.cc' || echo './'`src/genotype_dictionaries.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-sql_utilities.o `test -f 'src/sql_utilities.cc' || echo './'`src/sql_utilities.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-renz.o `test -f 'src/renz.cc' || echo './'`src/renz.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-export_formats.o `test -f 'src/export_formats.cc' || echo './'`src/export_formats.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-MetaPopInfo.o `test -f 'src/MetaPopInfo.cc' || echo './'`src/MetaPopInfo.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/populations-Vcf.o `test -f 'src/Vcf.cc' || echo './'`src/Vcf.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks-phasedstacks.o `test -f 'src/phasedstacks.cc' || echo './'`src/phasedstacks.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks-locus.o `test -f 'src/locus.cc' || echo './'`src/locus.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks-input.o `test -f 'src/input.cc' || echo './'`src/input.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks-sql_utilities.o `test -f 'src/sql_utilities.cc' || echo './'`src/sql_utilities.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks-log_utils.o `test -f 'src/log_utils.cc' || echo './'`src/log_utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks-utils.o `test -f 'src/utils.cc' || echo './'`src/utils.cc
g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c -o src/phasedstacks-catalog_utils.o `test -f 'src/catalog_utils.cc' || echo './'`src/catalog_utils.cc
g++ -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o ustacks src/ustacks-ustacks.o src/ustacks-stacks.o src/ustacks-mstack.o src/ustacks-mst.o src/ustacks-cmb.o src/ustacks-DNASeq.o src/ustacks-DNANSeq.o src/ustacks-models.o src/ustacks-utils.o src/ustacks-kmers.o src/ustacks-aln_utils.o src/ustacks-input.o -lz -lgomp
g++ -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o pstacks src/pstacks-pstacks.o src/pstacks-stacks.o src/pstacks-mstack.o src/pstacks-DNANSeq.o src/pstacks-DNASeq.o src/pstacks-models.o src/pstacks-utils.o src/pstacks-input.o ./htslib/libhts.a -lz -lgomp
g++ -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o estacks src/estacks-estacks.o src/estacks-stacks.o src/estacks-mstack.o src/estacks-models.o src/estacks-utils.o src/estacks-DNASeq.o src/estacks-DNANSeq.o src/estacks-input.o -lz -lgomp
g++ -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o cstacks src/cstacks-cstacks.o src/cstacks-stacks.o src/cstacks-locus.o src/cstacks-kmers.o src/cstacks-utils.o src/cstacks-aln_utils.o src/cstacks-DNASeq.o src/cstacks-DNANSeq.o src/cstacks-input.o src/cstacks-sql_utilities.o -lz -lgomp
g++ -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o sstacks src/sstacks-sstacks.o src/sstacks-stacks.o src/sstacks-locus.o src/sstacks-kmers.o src/sstacks-aln_utils.o src/sstacks-DNASeq.o src/sstacks-DNANSeq.o src/sstacks-utils.o src/sstacks-input.o src/sstacks-sql_utilities.o -lz -lgomp
g++ -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o rxstacks src/rxstacks-rxstacks.o src/rxstacks-stacks.o src/rxstacks-locus.o src/rxstacks-DNANSeq.o src/rxstacks-DNASeq.o src/rxstacks-mst.o src/rxstacks-models.o src/rxstacks-aln_utils.o src/rxstacks-utils.o src/rxstacks-input.o src/rxstacks-sql_utilities.o src/rxstacks-MetaPopInfo.o -lz -lgomp
g++ -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o hstacks src/hstacks-hstacks.o src/hstacks-stacks.o src/hstacks-locus.o src/hstacks-kmers.o src/hstacks-DNASeq.o src/hstacks-DNANSeq.o src/hstacks-utils.o src/hstacks-input.o src/hstacks-sql_utilities.o -lz -lgomp
g++ -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o process_radtags src/process_radtags-process_radtags.o src/process_radtags-utils.o src/process_radtags-log_utils.o src/process_radtags-write.o src/process_radtags-clean.o src/process_radtags-file_io.o src/process_radtags-input.o src/process_radtags-renz.o ./htslib/libhts.a -lz -lgomp
g++ -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o process_shortreads src/process_shortreads-process_shortreads.o src/process_shortreads-clean.o src/process_shortreads-file_io.o src/process_shortreads-utils.o src/process_shortreads-log_utils.o src/process_shortreads-write.o src/process_shortreads-kmers.o src/process_shortreads-input.o ./htslib/libhts.a -lz -lgomp
g++ -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o kmer_filter src/kmer_filter-kmer_filter.o src/kmer_filter-utils.o src/kmer_filter-write.o src/kmer_filter-kmers.o src/kmer_filter-input.o -lz -lgomp
g++ -fopenmp -I./htslib/htslib -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o clone_filter src/clone_filter-clone_filter.o src/clone_filter-kmers.o src/clone_filter-utils.o src/clone_filter-write.o src/clone_filter-clean.o src/clone_filter-file_io.o src/clone_filter-input.o ./htslib/libhts.a -lz -lgomp
g++ -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o genotypes src/genotypes-genotypes.o src/genotypes-utils.o src/genotypes-catalog_utils.o src/genotypes-log_utils.o src/genotypes-stacks.o src/genotypes-locus.o src/genotypes-DNASeq.o src/genotypes-DNANSeq.o src/genotypes-aln_utils.o src/genotypes-genotype_dictionaries.o src/genotypes-input.o src/genotypes-sql_utilities.o src/genotypes-renz.o src/genotypes-MetaPopInfo.o -lz -lgomp
g++ -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o phasedstacks src/phasedstacks-phasedstacks.o src/phasedstacks-locus.o src/phasedstacks-input.o src/phasedstacks-sql_utilities.o src/phasedstacks-log_utils.o src/phasedstacks-utils.o src/phasedstacks-catalog_utils.o -lz -lgomp
g++ -fopenmp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -o populations src/populations-populations.o src/populations-utils.o src/populations-catalog_utils.o src/populations-log_utils.o src/populations-stacks.o src/populations-locus.o src/populations-DNASeq.o src/populations-DNANSeq.o src/populations-aln_utils.o src/populations-genotype_dictionaries.o src/populations-input.o src/populations-sql_utilities.o src/populations-renz.o src/populations-export_formats.o src/populations-MetaPopInfo.o src/populations-Vcf.o -lz -lgomp
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
#ln -s /usr/share/automake-1.14/tap-driver.sh tests/tap-driver.sh
#dh_auto_test
# Does not work even after this trick. See
# https://groups.google.com/forum/#!msg/stacks-users/TA2tMEqb4Mg/pQy4fUCYi9kJ
true
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
fakeroot debian/rules binary-arch
dh binary-arch --with python2
dh_testroot -a
dh_prep -a
dh_auto_install -a
make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no
make[1]: Entering directory '/<<PKGBUILDDIR>>'
Making install in htslib
make[2]: Entering directory '/<<PKGBUILDDIR>>/htslib'
make[2]: Nothing to be done for 'install'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/htslib'
Making install in .
make[2]: Entering directory '/<<PKGBUILDDIR>>'
make[3]: Entering directory '/<<PKGBUILDDIR>>'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks'
/usr/bin/install -c ustacks pstacks estacks cstacks sstacks rxstacks hstacks process_radtags process_shortreads kmer_filter clone_filter genotypes populations phasedstacks '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/usr/bin/install -c scripts/denovo_map.pl scripts/ref_map.pl scripts/export_sql.pl scripts/sort_read_pairs.pl scripts/exec_velvet.pl scripts/load_sequences.pl scripts/index_radtags.pl scripts/load_radtags.pl scripts/stacks_export_notify.pl scripts/integrate_alignments.py '/<<PKGBUILDDIR>>/debian/tmp/usr/bin'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/sql'
/usr/bin/install -c -m 644 sql/mysql.cnf.dist sql/catalog_index.sql sql/stacks.sql sql/tag_index.sql sql/chr_index.sql '/<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/sql'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/php'
/usr/bin/install -c -m 644 php/CatalogClass.php php/annotate_marker.php php/constants.php.dist php/index.php php/tags.php php/tag.php php/Locus.php php/catalog.php php/correct_genotypes.php php/correct_genotype.php php/export_batch.php php/last_modified.php php/version.php php/catalog_genotypes.php php/db_functions.php php/header.php php/samples.php php/stacks_functions.php php/view_sequence.php php/sequence_blast.php php/pop_view.php php/sumstat_view.php php/hapstat_view.php php/fst_view.php php/phist_view.php php/stack_view.php php/population_view.js php/ajax.js php/annotate.js php/stacks.js php/export.js php/stacks.css '/<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/php'
/bin/mkdir -p '/<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/php/images'
/usr/bin/install -c -m 644 php/images/caret-d.png php/images/caret-u.png php/images/excel_icon.png php/images/l-arrow-disabled.png php/images/l-arrow.png php/images/r-arrow-disabled.png php/images/r-arrow.png php/images/stacks_bg.png php/images/stacks_logo_rev_small.png '/<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/php/images'
make install-data-hook
make[4]: Entering directory '/<<PKGBUILDDIR>>'
sed -e 's,_VERSION_,1.44,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<<PKGBUILDDIR>>/debian/tmp/usr/bin/denovo_map.pl > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/denovo_map.pl.subst
mv /<<PKGBUILDDIR>>/debian/tmp/usr/bin/denovo_map.pl.subst /<<PKGBUILDDIR>>/debian/tmp/usr/bin/denovo_map.pl
chmod +x /<<PKGBUILDDIR>>/debian/tmp/usr/bin/denovo_map.pl
sed -e 's,_VERSION_,1.44,' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<<PKGBUILDDIR>>/debian/tmp/usr/bin/ref_map.pl > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/ref_map.pl.subst
mv /<<PKGBUILDDIR>>/debian/tmp/usr/bin/ref_map.pl.subst /<<PKGBUILDDIR>>/debian/tmp/usr/bin/ref_map.pl
chmod +x /<<PKGBUILDDIR>>/debian/tmp/usr/bin/ref_map.pl
sed -e 's,_VERSION_,1.44,' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<<PKGBUILDDIR>>/debian/tmp/usr/bin/export_sql.pl > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/export_sql.pl.subst
mv /<<PKGBUILDDIR>>/debian/tmp/usr/bin/export_sql.pl.subst /<<PKGBUILDDIR>>/debian/tmp/usr/bin/export_sql.pl
chmod +x /<<PKGBUILDDIR>>/debian/tmp/usr/bin/export_sql.pl
sed -e 's,_VERSION_,1.44,' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<<PKGBUILDDIR>>/debian/tmp/usr/bin/index_radtags.pl > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/index_radtags.pl.subst
mv /<<PKGBUILDDIR>>/debian/tmp/usr/bin/index_radtags.pl.subst /<<PKGBUILDDIR>>/debian/tmp/usr/bin/index_radtags.pl
chmod +x /<<PKGBUILDDIR>>/debian/tmp/usr/bin/index_radtags.pl
sed -e 's,_VERSION_,1.44,' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<<PKGBUILDDIR>>/debian/tmp/usr/bin/load_radtags.pl > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/load_radtags.pl.subst
mv /<<PKGBUILDDIR>>/debian/tmp/usr/bin/load_radtags.pl.subst /<<PKGBUILDDIR>>/debian/tmp/usr/bin/load_radtags.pl
chmod +x /<<PKGBUILDDIR>>/debian/tmp/usr/bin/load_radtags.pl
sed -e 's,_VERSION_,1.44,' /<<PKGBUILDDIR>>/debian/tmp/usr/bin/sort_read_pairs.pl > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/sort_read_pairs.pl.subst
mv /<<PKGBUILDDIR>>/debian/tmp/usr/bin/sort_read_pairs.pl.subst /<<PKGBUILDDIR>>/debian/tmp/usr/bin/sort_read_pairs.pl
chmod +x /<<PKGBUILDDIR>>/debian/tmp/usr/bin/sort_read_pairs.pl
sed -e 's,_VERSION_,1.44,' /<<PKGBUILDDIR>>/debian/tmp/usr/bin/exec_velvet.pl > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/exec_velvet.pl.subst
mv /<<PKGBUILDDIR>>/debian/tmp/usr/bin/exec_velvet.pl.subst /<<PKGBUILDDIR>>/debian/tmp/usr/bin/exec_velvet.pl
chmod +x /<<PKGBUILDDIR>>/debian/tmp/usr/bin/exec_velvet.pl
sed -e 's,_VERSION_,1.44,' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' /<<PKGBUILDDIR>>/debian/tmp/usr/bin/load_sequences.pl > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/load_sequences.pl.subst
mv /<<PKGBUILDDIR>>/debian/tmp/usr/bin/load_sequences.pl.subst /<<PKGBUILDDIR>>/debian/tmp/usr/bin/load_sequences.pl
chmod +x /<<PKGBUILDDIR>>/debian/tmp/usr/bin/load_sequences.pl
sed -e 's,_VERSION_,1.44,' -e 's,_PKGDATADIR_,/usr/share/stacks/,g' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' \
/<<PKGBUILDDIR>>/debian/tmp/usr/bin/stacks_export_notify.pl > /<<PKGBUILDDIR>>/debian/tmp/usr/bin/stacks_export_notify.pl.subst
mv /<<PKGBUILDDIR>>/debian/tmp/usr/bin/stacks_export_notify.pl.subst /<<PKGBUILDDIR>>/debian/tmp/usr/bin/stacks_export_notify.pl
chmod +x /<<PKGBUILDDIR>>/debian/tmp/usr/bin/stacks_export_notify.pl
sed -e 's,_PKGDATADIR_,/usr/share/stacks/,g' -e 's,_BINDIR_,/usr/lib/stacks/bin/,g' \
/<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/php/constants.php.dist > /<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/php/constants.php.dist.subst
mv /<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/php/constants.php.dist.subst /<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/php/constants.php.dist
echo 1.44 > /<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/php/version.php
/bin/bash /<<PKGBUILDDIR>>/config/install-sh -d -m 755 /<<PKGBUILDDIR>>/debian/tmp/usr/share/stacks/php/export
make[4]: Leaving directory '/<<PKGBUILDDIR>>'
make[3]: Leaving directory '/<<PKGBUILDDIR>>'
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cp php/constants.php.dist ./constants.php
dh_install
# Skip this bit if not building stacks
! cd debian/stacks/usr/lib/stacks/bin || \
for f in *.pl ; do \
ln -s "$f" "`basename $f .pl`" ; \
done
# Skip this bit if not building stacks-web
# Note - directory perms will be set in postinst
dh_installdirs -pstacks-web /var/lib/stacks/export
dh_installdirs: No packages to build.
if [ -e debian/stacks-web/usr/share/stacks/php ] ; then \
rmdir debian/stacks-web/usr/share/stacks/php/export ; \
ln -s /var/lib/stacks/export \
debian/stacks-web/usr/share/stacks/php/export ; \
fi
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a
dh_installchangelogs -a
dh_python2 -a
W: dh_python2:479: Please add dh-python package to Build-Depends
dh_perl -a
debian/rules override_dh_link
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link
mkdir -p debian/stacks/usr/lib/debian-med/bin
cd debian/stacks/usr/lib/debian-med/bin && \
for f in `ls /<<PKGBUILDDIR>>/debian/stacks/usr/lib/stacks/bin` ; do \
ln -s ../../stacks/bin/$f ; \
done
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_strip_nondeterminism -a
dh_compress -a
dh_fixperms -a
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/phasedstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/kmer_filter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/process_shortreads contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/hstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/ustacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/process_radtags contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/genotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/clone_filter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/estacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/pstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/populations contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/cstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/rxstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: debian/stacks/usr/lib/stacks/bin/sstacks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/stacks/usr/lib/stacks/bin/phasedstacks debian/stacks/usr/lib/stacks/bin/kmer_filter debian/stacks/usr/lib/stacks/bin/process_shortreads debian/stacks/usr/lib/stacks/bin/hstacks debian/stacks/usr/lib/stacks/bin/ustacks debian/stacks/usr/lib/stacks/bin/process_radtags debian/stacks/usr/lib/stacks/bin/genotypes debian/stacks/usr/lib/stacks/bin/clone_filter debian/stacks/usr/lib/stacks/bin/estacks debian/stacks/usr/lib/stacks/bin/pstacks debian/stacks/usr/lib/stacks/bin/populations debian/stacks/usr/lib/stacks/bin/cstacks debian/stacks/usr/lib/stacks/bin/rxstacks debian/stacks/usr/lib/stacks/bin/sstacks were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package stacks: unused substitution variable ${perl:Depends}
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: package stacks: unused substitution variable ${perl:Depends}
dh_md5sums -a
dh_builddeb -a
dpkg-deb: building package 'stacks-dbgsym' in '../stacks-dbgsym_1.44-2_armhf.deb'.
dpkg-deb: building package 'stacks' in '../stacks_1.44-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=any -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../stacks_1.44-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build stacks-1.44
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2016-12-28T07:26:33Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
stacks_1.44-2_armhf.changes:
----------------------------
Format: 1.8
Date: Sat, 17 Dec 2016 17:34:44 +0100
Source: stacks
Binary: stacks stacks-web
Architecture: armhf
Version: 1.44-2
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
stacks - pipeline for building loci from short-read DNA sequences
stacks-web - web interface for displaying loci from short-read sequences
Closes: 848464
Changes:
stacks (1.44-2) unstable; urgency=medium
.
* d/watch: version=4
* debhelper 10
* stacks-web: Depends s/ | mysql-server/ | virtual-mysql-server/
Closes: #848464
Checksums-Sha1:
678e24d407bd3f866b6579f26a5e453b67ad6e2f 16484914 stacks-dbgsym_1.44-2_armhf.deb
5a7234fa2ece840868dbaf191f514d96b20e3d89 5446 stacks_1.44-2_armhf.buildinfo
bce17bc79774da592bf69791ba8f2a5337117e32 825522 stacks_1.44-2_armhf.deb
Checksums-Sha256:
dbdd07e8c236f72cf4aa0a8518a6a13629970d8e125df07c9873704eafc7876b 16484914 stacks-dbgsym_1.44-2_armhf.deb
c4186c3adcf469097a625f4fea8b0bacd467ca8c250130e5c07420936aa0f904 5446 stacks_1.44-2_armhf.buildinfo
18e7c8cb98a53b1dd3ada5146b057834ca8803556691ce8b57c62fe78dac1c5d 825522 stacks_1.44-2_armhf.deb
Files:
cd194bb1f2c8588d4cc68a5722dacbcd 16484914 debug extra stacks-dbgsym_1.44-2_armhf.deb
25d8e3aad343c084242abe48c5e5c507 5446 science optional stacks_1.44-2_armhf.buildinfo
70e096ee7b0abf735189365314e6e2bd 825522 science optional stacks_1.44-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
stacks-dbgsym_1.44-2_armhf.deb
------------------------------
new debian package, version 2.0.
size 16484914 bytes: control archive=1190 bytes.
943 bytes, 13 lines control
1484 bytes, 14 lines md5sums
Package: stacks-dbgsym
Source: stacks
Version: 1.44-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 17038
Depends: stacks (= 1.44-2)
Section: debug
Priority: extra
Homepage: http://creskolab.uoregon.edu/stacks/
Description: Debug symbols for stacks
Auto-Built-Package: debug-symbols
Build-Ids: 036d1bc6df6ba277e5573a0f0346abf3286a8fbb 0c096d55e50c8477d539fbb8ff6a27d6eb762cff 0c46ada0027df78fc720d957036980acc9e76af4 101be16175f6c5b3cfb71d1e49837767bad1010c 14553294f1475aa3b60bdf78dbc7e05886bccb0d 29054bb36f80dce341ff37c69634ddf2c21fb31e 3cd914813c803cbf66fd580de212e6da44b8ca8c 44f0c3e2b8d934ce9798286906ab2565a0e84d72 7e6375ce29d42c7ddd1f03d7a74d729ce8d00f5d 97a5e66e284c1300f4848616414bd917b330b633 a1df90c530a26d803498e3d0c9505b95a8b4c958 e06202b054664c5ced6da35a52a70ca1c1dbecde ebdcf6bce5a033168430e2a38c60f7f7b0b67c81 fddd73b5dd45c3c2b96e58a1a35364998adebaec
drwxr-xr-x root/root 0 2016-12-17 16:34 ./
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/03/
-rw-r--r-- root/root 1162384 2016-12-17 16:34 ./usr/lib/debug/.build-id/03/6d1bc6df6ba277e5573a0f0346abf3286a8fbb.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/0c/
-rw-r--r-- root/root 2602296 2016-12-17 16:34 ./usr/lib/debug/.build-id/0c/096d55e50c8477d539fbb8ff6a27d6eb762cff.debug
-rw-r--r-- root/root 600924 2016-12-17 16:34 ./usr/lib/debug/.build-id/0c/46ada0027df78fc720d957036980acc9e76af4.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/10/
-rw-r--r-- root/root 1573336 2016-12-17 16:34 ./usr/lib/debug/.build-id/10/1be16175f6c5b3cfb71d1e49837767bad1010c.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/14/
-rw-r--r-- root/root 1048296 2016-12-17 16:34 ./usr/lib/debug/.build-id/14/553294f1475aa3b60bdf78dbc7e05886bccb0d.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/29/
-rw-r--r-- root/root 1575316 2016-12-17 16:34 ./usr/lib/debug/.build-id/29/054bb36f80dce341ff37c69634ddf2c21fb31e.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/3c/
-rw-r--r-- root/root 882684 2016-12-17 16:34 ./usr/lib/debug/.build-id/3c/d914813c803cbf66fd580de212e6da44b8ca8c.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/44/
-rw-r--r-- root/root 771888 2016-12-17 16:34 ./usr/lib/debug/.build-id/44/f0c3e2b8d934ce9798286906ab2565a0e84d72.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/7e/
-rw-r--r-- root/root 1182960 2016-12-17 16:34 ./usr/lib/debug/.build-id/7e/6375ce29d42c7ddd1f03d7a74d729ce8d00f5d.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/97/
-rw-r--r-- root/root 1464340 2016-12-17 16:34 ./usr/lib/debug/.build-id/97/a5e66e284c1300f4848616414bd917b330b633.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/a1/
-rw-r--r-- root/root 713504 2016-12-17 16:34 ./usr/lib/debug/.build-id/a1/df90c530a26d803498e3d0c9505b95a8b4c958.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/e0/
-rw-r--r-- root/root 1103652 2016-12-17 16:34 ./usr/lib/debug/.build-id/e0/6202b054664c5ced6da35a52a70ca1c1dbecde.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/eb/
-rw-r--r-- root/root 1439376 2016-12-17 16:34 ./usr/lib/debug/.build-id/eb/dcf6bce5a033168430e2a38c60f7f7b0b67c81.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debug/.build-id/fd/
-rw-r--r-- root/root 1297112 2016-12-17 16:34 ./usr/lib/debug/.build-id/fd/dd73b5dd45c3c2b96e58a1a35364998adebaec.debug
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/share/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/share/doc/stacks-dbgsym -> stacks
stacks_1.44-2_armhf.deb
-----------------------
new debian package, version 2.0.
size 825522 bytes: control archive=1870 bytes.
924 bytes, 18 lines control
1999 bytes, 30 lines md5sums
171 bytes, 9 lines * postinst #!/bin/sh
249 bytes, 14 lines * prerm #!/bin/sh
Package: stacks
Version: 1.44-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 4762
Depends: libc6 (>= 2.7), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.2.6), python:any (>= 2.6.6-7~), samtools, libdbi-perl
Recommends: libspreadsheet-writeexcel-perl
Section: science
Priority: optional
Homepage: http://creskolab.uoregon.edu/stacks/
Description: pipeline for building loci from short-read DNA sequences
Stacks is a software pipeline for building loci from short-read sequences,
such as those generated on the Illumina platform. Stacks was developed to work
with restriction enzyme-based data, such as RAD-seq, for the purpose of
building genetic maps and conducting population genomics and phylogeography.
.
Note that this package installs Stacks such that all commands must be run as:
$ stacks <cmdname> <args>
drwxr-xr-x root/root 0 2016-12-17 16:34 ./
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/bin/
-rwxr-xr-x root/root 771 2016-12-17 16:34 ./usr/bin/stacks
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/clone_filter -> ../../stacks/bin/clone_filter
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/cstacks -> ../../stacks/bin/cstacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/denovo_map -> ../../stacks/bin/denovo_map
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/denovo_map.pl -> ../../stacks/bin/denovo_map.pl
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/estacks -> ../../stacks/bin/estacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/exec_velvet -> ../../stacks/bin/exec_velvet
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/exec_velvet.pl -> ../../stacks/bin/exec_velvet.pl
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/export_sql -> ../../stacks/bin/export_sql
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/export_sql.pl -> ../../stacks/bin/export_sql.pl
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/genotypes -> ../../stacks/bin/genotypes
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/hstacks -> ../../stacks/bin/hstacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/index_radtags -> ../../stacks/bin/index_radtags
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/index_radtags.pl -> ../../stacks/bin/index_radtags.pl
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/integrate_alignments.py -> ../../stacks/bin/integrate_alignments.py
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/kmer_filter -> ../../stacks/bin/kmer_filter
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/load_radtags -> ../../stacks/bin/load_radtags
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/load_radtags.pl -> ../../stacks/bin/load_radtags.pl
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/load_sequences -> ../../stacks/bin/load_sequences
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/load_sequences.pl -> ../../stacks/bin/load_sequences.pl
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/phasedstacks -> ../../stacks/bin/phasedstacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/populations -> ../../stacks/bin/populations
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/process_radtags -> ../../stacks/bin/process_radtags
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/process_shortreads -> ../../stacks/bin/process_shortreads
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/pstacks -> ../../stacks/bin/pstacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/ref_map -> ../../stacks/bin/ref_map
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/ref_map.pl -> ../../stacks/bin/ref_map.pl
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/rxstacks -> ../../stacks/bin/rxstacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/sort_read_pairs -> ../../stacks/bin/sort_read_pairs
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/sort_read_pairs.pl -> ../../stacks/bin/sort_read_pairs.pl
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/sstacks -> ../../stacks/bin/sstacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/stacks_export_notify -> ../../stacks/bin/stacks_export_notify
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/stacks_export_notify.pl -> ../../stacks/bin/stacks_export_notify.pl
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/debian-med/bin/ustacks -> ../../stacks/bin/ustacks
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/stacks/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/lib/stacks/bin/
-rwxr-xr-x root/root 640868 2016-12-17 16:34 ./usr/lib/stacks/bin/clone_filter
-rwxr-xr-x root/root 235316 2016-12-17 16:34 ./usr/lib/stacks/bin/cstacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/stacks/bin/denovo_map -> denovo_map.pl
-rwxr-xr-x root/root 33716 2016-12-17 16:34 ./usr/lib/stacks/bin/denovo_map.pl
-rwxr-xr-x root/root 108272 2016-12-17 16:34 ./usr/lib/stacks/bin/estacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/stacks/bin/exec_velvet -> exec_velvet.pl
-rwxr-xr-x root/root 8919 2016-12-17 16:34 ./usr/lib/stacks/bin/exec_velvet.pl
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/stacks/bin/export_sql -> export_sql.pl
-rwxr-xr-x root/root 31818 2016-12-17 16:34 ./usr/lib/stacks/bin/export_sql.pl
-rwxr-xr-x root/root 276844 2016-12-17 16:34 ./usr/lib/stacks/bin/genotypes
-rwxr-xr-x root/root 173724 2016-12-17 16:34 ./usr/lib/stacks/bin/hstacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/stacks/bin/index_radtags -> index_radtags.pl
-rwxr-xr-x root/root 20389 2016-12-17 16:34 ./usr/lib/stacks/bin/index_radtags.pl
-rwxr-xr-x root/root 10799 2016-12-17 16:34 ./usr/lib/stacks/bin/integrate_alignments.py
-rwxr-xr-x root/root 219016 2016-12-17 16:34 ./usr/lib/stacks/bin/kmer_filter
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/stacks/bin/load_radtags -> load_radtags.pl
-rwxr-xr-x root/root 15091 2016-12-17 16:34 ./usr/lib/stacks/bin/load_radtags.pl
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/stacks/bin/load_sequences -> load_sequences.pl
-rwxr-xr-x root/root 6245 2016-12-17 16:34 ./usr/lib/stacks/bin/load_sequences.pl
-rwxr-xr-x root/root 116520 2016-12-17 16:34 ./usr/lib/stacks/bin/phasedstacks
-rwxr-xr-x root/root 531388 2016-12-17 16:34 ./usr/lib/stacks/bin/populations
-rwxr-xr-x root/root 543332 2016-12-17 16:34 ./usr/lib/stacks/bin/process_radtags
-rwxr-xr-x root/root 596144 2016-12-17 16:34 ./usr/lib/stacks/bin/process_shortreads
-rwxr-xr-x root/root 456540 2016-12-17 16:34 ./usr/lib/stacks/bin/pstacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/stacks/bin/ref_map -> ref_map.pl
-rwxr-xr-x root/root 31285 2016-12-17 16:34 ./usr/lib/stacks/bin/ref_map.pl
-rwxr-xr-x root/root 182128 2016-12-17 16:34 ./usr/lib/stacks/bin/rxstacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/stacks/bin/sort_read_pairs -> sort_read_pairs.pl
-rwxr-xr-x root/root 14915 2016-12-17 16:34 ./usr/lib/stacks/bin/sort_read_pairs.pl
-rwxr-xr-x root/root 239336 2016-12-17 16:34 ./usr/lib/stacks/bin/sstacks
lrwxrwxrwx root/root 0 2016-12-17 16:34 ./usr/lib/stacks/bin/stacks_export_notify -> stacks_export_notify.pl
-rwxr-xr-x root/root 6454 2016-12-17 16:34 ./usr/lib/stacks/bin/stacks_export_notify.pl
-rwxr-xr-x root/root 276484 2016-12-17 16:34 ./usr/lib/stacks/bin/ustacks
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/share/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/share/doc/stacks/
-rw-r--r-- root/root 1451 2016-12-17 16:34 ./usr/share/doc/stacks/README.Debian
-rw-r--r-- root/root 1050 2016-12-17 16:34 ./usr/share/doc/stacks/changelog.Debian.gz
-rw-r--r-- root/root 22990 2016-10-16 23:25 ./usr/share/doc/stacks/changelog.gz
-rw-r--r-- root/root 1335 2016-12-17 16:34 ./usr/share/doc/stacks/copyright
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/share/python/
drwxr-xr-x root/root 0 2016-12-17 16:34 ./usr/share/python/runtime.d/
-rwxr-xr-x root/root 122 2016-12-17 16:34 ./usr/share/python/runtime.d/stacks.rtupdate
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 250860
Build-Time: 1097
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 511
Job: stacks_1.44-2
Machine Architecture: armhf
Package: stacks
Package-Time: 1657
Source-Version: 1.44-2
Space: 250860
Status: successful
Version: 1.44-2
--------------------------------------------------------------------------------
Finished at 2016-12-28T07:26:33Z
Build needed 00:27:37, 250860k disc space