spoa →
4.0.8-1 →
armhf → 2022-12-02 05:53:01
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| spoa 4.0.8-1 (armhf) Fri, 02 Dec 2022 05:37:44 +0000 |
+==============================================================================+
Package: spoa
Version: 4.0.8-1
Source Version: 4.0.8-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-652ea3b7-b092-421a-bacb-dd6e0d417577' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.4 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.7 MB in 29s (958 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'spoa' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/spoa.git
Please use:
git clone https://salsa.debian.org/med-team/spoa.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 55.0 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main spoa 4.0.8-1 (dsc) [2161 B]
Get:2 http://172.17.4.1/private bookworm-staging/main spoa 4.0.8-1 (tar) [44.3 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main spoa 4.0.8-1 (diff) [8600 B]
Fetched 55.0 kB in 0s (573 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/spoa-HrSJeE/spoa-4.0.8' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/spoa-HrSJeE' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-FuQ5AZ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-FuQ5AZ/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (2536 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap libperl5.34 netbase perl-modules-5.34
sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 80 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (22.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14830 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev (>= 3.0), libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev
Filtered Build-Depends: debhelper-compat (= 13), cmake, d-shlibs, libbioparser-dev (>= 3.0), libcereal-dev, libgtest-dev, zlib1g-dev, libsimde-dev
dpkg-deb: building package 'sbuild-build-depends-spoa-dummy' in '/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive/sbuild-build-depends-spoa-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-spoa-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ Sources [569 B]
Get:5 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ Packages [622 B]
Fetched 2524 B in 1s (3285 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install spoa build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap libperl5.34 netbase perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bsdutils cmake
cmake-data d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file
gettext gettext-base googletest groff-base intltool-debian
libarchive-zip-perl libarchive13 libbioparser-dev libbiosoup-dev libblkid1
libbrotli1 libcereal-dev libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libgtest-dev libicu72 libjsoncpp25
libmagic-mgc libmagic1 libmount1 libncurses6 libnghttp2-14 libpipeline1
libprocps8 libpsl5 librhash0 librtmp1 libsimde-dev libsmartcols1 libssh2-1
libsub-override-perl libtool libuchardet0 libuuid1 libuv1 libxml2 m4 man-db
mount po-debconf procps rapidjson-dev util-linux util-linux-extra zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc cmake-format
elpa-cmake-mode ninja-build dh-make gettext-doc libasprintf-dev
libgettextpo-dev groff lrzip cryptsetup-bin libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser nfs-common
libmail-box-perl rapidjson-doc dosfstools kbd util-linux-locales
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libgpm2 publicsuffix
libltdl-dev uuid-runtime libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base googletest groff-base intltool-debian libarchive-zip-perl
libarchive13 libbioparser-dev libbiosoup-dev libbrotli1 libcereal-dev
libcurl4 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libgtest-dev libicu72 libjsoncpp25
libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libpipeline1 libprocps8
libpsl5 librhash0 librtmp1 libsimde-dev libssh2-1 libsub-override-perl
libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps
rapidjson-dev sbuild-build-depends-spoa-dummy zlib1g-dev
The following packages will be upgraded:
bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 mount util-linux
util-linux-extra
8 upgraded, 55 newly installed, 0 to remove and 72 not upgraded.
Need to get 29.3 MB of archives.
After this operation, 123 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-FuQ5AZ/apt_archive ./ sbuild-build-depends-spoa-dummy 0.invalid.0 [916 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-4 [83.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-4 [91.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-4 [98.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-4 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-4 [126 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-4 [131 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-4 [144 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-4 [27.1 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libprocps8 armhf 2:3.3.17-7.1 [41.9 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf procps armhf 2:3.3.17-7.1 [457 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libarchive13 armhf 3.6.0-1 [306 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.86.0-2 [322 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libjsoncpp25 armhf 1.9.5-4 [66.7 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf librhash0 armhf 1.4.3-3 [142 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libuv1 armhf 1.44.2-1+rpi1 [125 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf cmake-data all 3.25.0-3 [2026 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf cmake armhf 3.25.0-3 [3868 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf d-shlibs all 0.104 [18.6 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.1 [80.8 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.1 [941 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf googletest all 1.12.1-0.2 [506 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libbiosoup-dev all 0.10.0-4 [7784 B]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libbioparser-dev all 3.0.15-3 [9032 B]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf rapidjson-dev all 1.1.0+dfsg2-7.1 [97.7 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libcereal-dev armhf 1.3.2+dfsg-4+rpi1 [221 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libgtest-dev armhf 1.12.1-0.2 [230 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libsimde-dev all 0.7.2-6 [259 kB]
debconf: delaying package configuration, since apt-utils is not installed
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(Reading database ... 14830 files and directories currently installed.)
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Setting up bsdutils (1:2.38.1-4) ...
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Preparing to unpack .../util-linux-extra_2.38.1-4_armhf.deb ...
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Setting up util-linux (2.38.1-4) ...
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Preparing to unpack .../mount_2.38.1-4_armhf.deb ...
Unpacking mount (2.38.1-4) over (2.38.1-1.1) ...
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Setting up libexpat1:armhf (2.5.0-1) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libsimde-dev (0.7.2-6) ...
Setting up libpsl5:armhf (0.21.0-1.2) ...
Setting up libicu72:armhf (72.1-3) ...
Setting up bsdextrautils (2.38.1-4) ...
Setting up libmagic-mgc (1:5.41-4) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.11.1) ...
Setting up libbrotli1:armhf (1.0.9-2+b2) ...
Setting up libnghttp2-14:armhf (1.50.0-1) ...
Setting up libmagic1:armhf (1:5.41-4) ...
Setting up gettext-base (0.21-10) ...
Setting up m4 (1.4.19-1) ...
Setting up file (1:5.41-4) ...
Setting up googletest (1.12.1-0.2) ...
Setting up rapidjson-dev (1.1.0+dfsg2-7.1) ...
Setting up libbiosoup-dev (0.10.0-4) ...
Setting up autotools-dev (20220109.1) ...
Setting up libuv1:armhf (1.44.2-1+rpi1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.3+20220423-2) ...
Setting up autopoint (0.21-10) ...
Setting up libjsoncpp25:armhf (1.9.5-4) ...
Setting up d-shlibs (0.104) ...
Setting up autoconf (2.71-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-4.1) ...
Setting up mount (2.38.1-4) ...
Setting up libbioparser-dev (3.0.15-3) ...
Setting up librhash0:armhf (1.4.3-3) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up cmake-data (3.25.0-3) ...
Setting up libelf1:armhf (0.187-2+rpi2) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.1) ...
Setting up libprocps8:armhf (2:3.3.17-7.1) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up gettext (0.21-10) ...
Setting up libgtest-dev:armhf (1.12.1-0.2) ...
Setting up libtool (2.4.7-5) ...
Setting up libarchive13:armhf (3.6.0-1) ...
Setting up libcereal-dev (1.3.2+dfsg-4+rpi1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up dh-strip-nondeterminism (1.13.0-1) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-9) ...
Setting up procps (2:3.3.17-7.1) ...
Setting up libcurl4:armhf (7.86.0-2) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up cmake (3.25.0-3) ...
Setting up debhelper (13.11.1) ...
Setting up sbuild-build-depends-spoa-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-3+rpi1 gcc-12_12.2.0-3+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 cmake_3.25.0-3 cmake-data_3.25.0-3 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-3+rpi1 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.11.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-3+rpi1 gcc_4:12.2.0-1+rpi1 gcc-10-base_10.4.0-5+rpi1 gcc-12_12.2.0-3+rpi1 gcc-12-base_12.2.0-3+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 googletest_1.12.1-0.2 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1 libasan8_12.2.0-3+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-3+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libbinutils_2.39-6+rpi1 libbioparser-dev_3.0.15-3 libbiosoup-dev_0.10.0-4 libblkid1_2.38.1-4 libbrotli1_1.0.9-2+b2 libbz2-1.0_1.0.8-5+b2 libc-bin_2.35-2+rpi1 libc-dev-bin_2.35-2+rpi1 libc6_2.35-2+rpi1 libc6-dev_2.35-2+rpi1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_12.2.0-3+rpi1 libcereal-dev_1.3.2+dfsg-4+rpi1 libcom-err2_1.46.6~rc1-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libctf-nobfd0_2.39-6+rpi1 libctf0_2.39-6+rpi1 libcurl4_7.86.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.11.1 libdpkg-perl_1.21.9+rpi1 libelf1_0.187-2+rpi2 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1 libfakeroot_1.29-1 libffi8_3.4.2-4 libfile-stripnondeterminism-perl_1.13.0-1 libgcc-12-dev_12.2.0-3+rpi1 libgcc-s1_12.2.0-3+rpi1 libgcrypt20_1.10.1-2+b2 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-2 libgomp1_12.2.0-3+rpi1 libgpg-error0_1.45-2 libgssapi-krb5-2_1.20-1 libgtest-dev_1.12.1-0.2 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1 libisl23_0.25-1 libjsoncpp25_1.9.5-4 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20-1 libkrb5support0_1.20-1 libksba8_1.6.0-3 libldap-2.4-2_2.4.59+dfsg-1 libldap-2.5-0_2.5.13+dfsg-2+rpi1 libldap-common_2.5.13+dfsg-2+rpi1 liblocale-gettext-perl_1.07-4+b3 liblz4-1_1.9.4-1+rpi1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-cap_1:2.44-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-1+b2 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.7-1 libprocps8_2:3.3.17-7.1 libpsl5_0.21.0-1.2 libreadline8_8.2-1 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-8 libsasl2-modules-db_2.1.28+dfsg-8 libseccomp2_2.5.4-1+rpi1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsimde-dev_0.7.2-6 libsmartcols1_2.38.1-4 libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.5-4 libstdc++-12-dev_12.2.0-3+rpi1 libstdc++6_12.2.0-3+rpi1 libsub-override-perl_0.09-4 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtext-charwidth-perl_0.04-10+b3 libtext-iconv-perl_1.7-7+b3 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libubsan1_12.2.0-3+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-4 libuv1_1.44.2-1+rpi1 libxml2_2.9.14+dfsg-1.1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pinentry-curses_1.2.0-2 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7.1 rapidjson-dev_1.1.0+dfsg2-7.1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-spoa-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.lssY0jR_/trustedkeys.kbx': General error
gpgv: Signature made Tue Nov 29 20:41:56 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./spoa_4.0.8-1.dsc
dpkg-source: info: extracting spoa in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking spoa_4.0.8.orig.tar.gz
dpkg-source: info: unpacking spoa_4.0.8-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-ftbfs-gcc-10.patch
dpkg-source: info: applying use_debian_packaged_libs.patch
dpkg-source: info: applying shared_and_static.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-652ea3b7-b092-421a-bacb-dd6e0d417577
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package spoa
dpkg-buildpackage: info: source version 4.0.8-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --no-parallel
dh_autoreconf_clean -O--no-parallel
dh_clean -O--no-parallel
debian/rules binary-arch
dh binary-arch --no-parallel
dh_update_autotools_config -a -O--no-parallel
dh_autoreconf -a -O--no-parallel
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/arm-linux-gnueabihf/cmake/CpuFeatures
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf -DCMAKE_BUILD_TYPE=Release -Dspoa_build_executable=ON -Dspoa_build_tests=ON -Dspoa_use_simde_nonvec=ON -Dspoa_use_simde_openmp=ON -Dspoa_optimize_for_native=OFF -DCMAKE_PREFIX_PATH=/usr/lib/arm-linux-gnueabihf/cmake/CpuFeatures ..
-- The CXX compiler identification is GNU 12.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
spoa_build_executable
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--no-parallel
cd obj-arm-linux-gnueabihf && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/spoa.dir/build.make CMakeFiles/spoa.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 7%] Building CXX object CMakeFiles/spoa.dir/src/alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -fPIC -std=c++11 -MD -MT CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/alignment_engine.cpp
[ 15%] Building CXX object CMakeFiles/spoa.dir/src/graph.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -fPIC -std=c++11 -MD -MT CMakeFiles/spoa.dir/src/graph.cpp.o -MF CMakeFiles/spoa.dir/src/graph.cpp.o.d -o CMakeFiles/spoa.dir/src/graph.cpp.o -c /<<PKGBUILDDIR>>/src/graph.cpp
[ 23%] Building CXX object CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -fPIC -std=c++11 -MD -MT CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -MF CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o.d -o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o -c /<<PKGBUILDDIR>>/src/simd_alignment_engine_dispatcher.cpp
[ 30%] Building CXX object CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -Dspoa_EXPORTS -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -fPIC -std=c++11 -MD -MT CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/sisd_alignment_engine.cpp
[ 38%] Linking CXX shared library lib/libspoa.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa.dir/link.txt --verbose=1
/usr/bin/c++ -fPIC -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libspoa.so.7.0.0 -o lib/libspoa.so.7.0.0 CMakeFiles/spoa.dir/src/alignment_engine.cpp.o CMakeFiles/spoa.dir/src/graph.cpp.o CMakeFiles/spoa.dir/src/simd_alignment_engine_dispatcher.cpp.o CMakeFiles/spoa.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/cmake -E cmake_symlink_library lib/libspoa.so.7.0.0 lib/libspoa.so.7.0.0 lib/libspoa.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 38%] Built target spoa
make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa_static.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/spoa_static.dir/build.make CMakeFiles/spoa_static.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 46%] Building CXX object CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -std=c++11 -MD -MT CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/alignment_engine.cpp
[ 53%] Building CXX object CMakeFiles/spoa_static.dir/src/graph.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -std=c++11 -MD -MT CMakeFiles/spoa_static.dir/src/graph.cpp.o -MF CMakeFiles/spoa_static.dir/src/graph.cpp.o.d -o CMakeFiles/spoa_static.dir/src/graph.cpp.o -c /<<PKGBUILDDIR>>/src/graph.cpp
[ 61%] Building CXX object CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/vendor/simde -I/usr/include/cpu_features -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -std=c++11 -MD -MT CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -MF CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o.d -o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o -c /<<PKGBUILDDIR>>/src/sisd_alignment_engine.cpp
[ 69%] Linking CXX static library lib/libspoa_static.a
/usr/bin/cmake -P CMakeFiles/spoa_static.dir/cmake_clean_target.cmake
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_static.dir/link.txt --verbose=1
/usr/bin/ar qc lib/libspoa_static.a CMakeFiles/spoa_static.dir/src/alignment_engine.cpp.o CMakeFiles/spoa_static.dir/src/graph.cpp.o CMakeFiles/spoa_static.dir/src/sisd_alignment_engine.cpp.o
/usr/bin/ranlib lib/libspoa_static.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 69%] Built target spoa_static
make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa_exe.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/spoa_exe.dir/build.make CMakeFiles/spoa_exe.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 76%] Building CXX object CMakeFiles/spoa_exe.dir/src/main.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -DVERSION=\"4.0.8\" -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -std=c++11 -MD -MT CMakeFiles/spoa_exe.dir/src/main.cpp.o -MF CMakeFiles/spoa_exe.dir/src/main.cpp.o.d -o CMakeFiles/spoa_exe.dir/src/main.cpp.o -c /<<PKGBUILDDIR>>/src/main.cpp
[ 84%] Linking CXX executable bin/spoa
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_exe.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_exe.dir/src/main.cpp.o -o bin/spoa -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/lib: lib/libspoa.so.7.0.0 -lz
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 84%] Built target spoa_exe
make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/spoa_test.dir/DependInfo.cmake --color=
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/spoa_test.dir/build.make CMakeFiles/spoa_test.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 92%] Building CXX object CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o
/usr/bin/c++ -DSIMDE_ENABLE_NATIVE_ALIASES -DSIMDE_ENABLE_OPENMP -DSIMDE_NO_NATIVE -DSPOA_USE_SIMDE -DTEST_DATA=\"/<<PKGBUILDDIR>>/test/data/sample.fastq.gz\" -I/<<PKGBUILDDIR>>/include -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/_deps/simde-src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -DGTEST_HAS_PTHREAD=1 -std=c++11 -MD -MT CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -MF CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o.d -o CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -c /<<PKGBUILDDIR>>/test/spoa_test.cpp
[100%] Linking CXX executable bin/spoa_test
/usr/bin/cmake -E cmake_link_script CMakeFiles/spoa_test.dir/link.txt --verbose=1
/usr/bin/c++ -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wno-aligned-new -Wno-ignored-attributes -fopenmp-simd -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now CMakeFiles/spoa_test.dir/test/spoa_test.cpp.o -o bin/spoa_test -Wl,-rpath,/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/lib lib/libspoa.so.7.0.0 -lz /usr/lib/arm-linux-gnueabihf/libgtest_main.a /usr/lib/arm-linux-gnueabihf/libgtest.a
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target spoa_test
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
`find . -name spoa_test`
Running main() from ./googletest/src/gtest_main.cc
[==========] Running 22 tests from 2 test suites.
[----------] Global test environment set-up.
[----------] 3 tests from SpoaAlignmentTest
[ RUN ] SpoaAlignmentTest.TypeError
[ OK ] SpoaAlignmentTest.TypeError (0 ms)
[ RUN ] SpoaAlignmentTest.EmptyInput
[ OK ] SpoaAlignmentTest.EmptyInput (0 ms)
[ RUN ] SpoaAlignmentTest.LargeInput
[ OK ] SpoaAlignmentTest.LargeInput (0 ms)
[----------] 3 tests from SpoaAlignmentTest (1 ms total)
[----------] 19 tests from SpoaTest
[ RUN ] SpoaTest.Clear
[ OK ] SpoaTest.Clear (8221 ms)
[ RUN ] SpoaTest.Local
[ OK ] SpoaTest.Local (4080 ms)
[ RUN ] SpoaTest.LocalAffine
[ OK ] SpoaTest.LocalAffine (5475 ms)
[ RUN ] SpoaTest.LocalConvex
[ OK ] SpoaTest.LocalConvex (9640 ms)
[ RUN ] SpoaTest.LocalWithQualities
[ OK ] SpoaTest.LocalWithQualities (4085 ms)
[ RUN ] SpoaTest.LocalAffineWithQualities
[ OK ] SpoaTest.LocalAffineWithQualities (5474 ms)
[ RUN ] SpoaTest.LocalConvexWithQualities
[ OK ] SpoaTest.LocalConvexWithQualities (9646 ms)
[ RUN ] SpoaTest.Global
[ OK ] SpoaTest.Global (3680 ms)
[ RUN ] SpoaTest.GlobalAffine
[ OK ] SpoaTest.GlobalAffine (5044 ms)
[ RUN ] SpoaTest.GlobalConvex
[ OK ] SpoaTest.GlobalConvex (9214 ms)
[ RUN ] SpoaTest.GlobalWithQualities
[ OK ] SpoaTest.GlobalWithQualities (3682 ms)
[ RUN ] SpoaTest.GlobalAffineWithQualities
[ OK ] SpoaTest.GlobalAffineWithQualities (5040 ms)
[ RUN ] SpoaTest.GlobalConvexWithQualities
[ OK ] SpoaTest.GlobalConvexWithQualities (9214 ms)
[ RUN ] SpoaTest.SemiGlobal
[ OK ] SpoaTest.SemiGlobal (3646 ms)
[ RUN ] SpoaTest.SemiGlobalAffine
[ OK ] SpoaTest.SemiGlobalAffine (5002 ms)
[ RUN ] SpoaTest.SemiGlobalConvex
[ OK ] SpoaTest.SemiGlobalConvex (9220 ms)
[ RUN ] SpoaTest.SemiGlobalWithQualities
[ OK ] SpoaTest.SemiGlobalWithQualities (3645 ms)
[ RUN ] SpoaTest.SemiGlobalAffineWithQualities
[ OK ] SpoaTest.SemiGlobalAffineWithQualities (5006 ms)
[ RUN ] SpoaTest.SemiGlobalConvexWithQualities
[ OK ] SpoaTest.SemiGlobalConvexWithQualities (9227 ms)
[----------] 19 tests from SpoaTest (118260 ms total)
[----------] Global test environment tear-down
[==========] 22 tests from 2 test suites ran. (118263 ms total)
[ PASSED ] 22 tests.
`find . -name spoa | grep bin` test/data/sample.fastq.gz
>Consensus LN:i:495
AATGATGCGCTTTGTTGGCGCGGTGGCTTGATGCAGGGGCTAATCGACCTCTGGCAACCACTTTTCCATGACAGGAGTTGAATATGGCATTCAGTAATCCCTTCGATGATCCGCAGGGAGCGTTTTACATATTGCGCAATGCGCAGGGCAATTCAGTCTGTGGCCGCAACAATGCGTCTTACCGGCAGGCTGGGACATTGTGTGTCAGCCGCAGTCACAGGCGTCCTGCCAGCAGTGGCTGGAAGCCCACTGGCGTACTCTGACACCGACGAATTTTACCCAGTTGCAGGAGGCACAATGAGCCAGCATTTACCTTTGGTCGCCGCACAGCCCGGCATCTGGATGGCAGAAAAACTGTCAGAATTACCCTCCGCCTGGAGCGTGGCGCATTACGTTGAGTTAACCGGAGAGGTTGATTCGCCATTACTGGCCCGCGCGGTGGTTGCCGGACTAGCGCAAGCAGATACGCTTTACACGCGCAACCAAGGATTTCGG
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--no-parallel
dh_prep -a -O--no-parallel
dh_auto_install -a -O--no-parallel
cd obj-arm-linux-gnueabihf && make -j1 install DESTDIR=/<<PKGBUILDDIR>>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa_static.a
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/alignment_engine.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/architectures.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/graph.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/spoa/spoa.hpp
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets-release.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfig.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfigVersion.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa
-- Set runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/bin/spoa" to ""
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
debian/rules override_dh_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_install
d-shlibmove --commit \
--multiarch \
--devunversioned \
--exclude-la \
--exclude-a \
--movedev debian/tmp/usr/include/spoa usr/include \
--movedev debian/tmp/usr/lib/arm-linux-gnueabihf/cmake /usr/lib/arm-linux-gnueabihf \
debian/tmp/usr/lib/*/*.so
Library package automatic movement utility
set -e
install -d -m 755 debian/libspoa-dev/usr/lib/arm-linux-gnueabihf
install -d -m 755 debian/libspoa7.0.0/usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so debian/libspoa-dev/usr/lib/arm-linux-gnueabihf
mv /<<PKGBUILDDIR>>/debian/tmp/usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0 debian/libspoa7.0.0/usr/lib/arm-linux-gnueabihf
PKGDEV=libspoa-dev
PKGSHL=libspoa7.0.0
install -d -m 755 debian/libspoa-dev/usr/include
mv debian/tmp/usr/include/spoa debian/libspoa-dev/usr/include
install -d -m 755 debian/libspoa-dev//usr/lib/arm-linux-gnueabihf
mv debian/tmp/usr/lib/arm-linux-gnueabihf/cmake debian/libspoa-dev//usr/lib/arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--no-parallel
dh_installchangelogs -a -O--no-parallel
dh_installexamples -a -O--no-parallel
dh_installman -a -O--no-parallel
dh_installsystemduser -a -O--no-parallel
dh_perl -a -O--no-parallel
dh_link -a -O--no-parallel
dh_strip_nondeterminism -a -O--no-parallel
dh_compress -a -O--no-parallel
dh_fixperms -a -O--no-parallel
dh_missing -a -O--no-parallel
dh_dwz -a -O--no-parallel
dh_strip -a -O--no-parallel
dh_makeshlibs -a -O--no-parallel
dh_shlibdeps -a -O--no-parallel
dpkg-shlibdeps: warning: debian/spoa/usr/bin/spoa contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/spoa/usr/bin/spoa was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libspoa7.0.0/usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0 found in none of the libraries
dh_installdeb -a -O--no-parallel
dh_gencontrol -a -O--no-parallel
dpkg-gencontrol: warning: Depends field of package libspoa-dev: substitution variable ${shlibs:Depends} used, but is not defined
dh_md5sums -a -O--no-parallel
dh_builddeb -a -O--no-parallel
dpkg-deb: building package 'spoa' in '../spoa_4.0.8-1_armhf.deb'.
dpkg-deb: building package 'libspoa7.0.0' in '../libspoa7.0.0_4.0.8-1_armhf.deb'.
dpkg-deb: building package 'libspoa-dev' in '../libspoa-dev_4.0.8-1_armhf.deb'.
dpkg-deb: building package 'spoa-dbgsym' in '../spoa-dbgsym_4.0.8-1_armhf.deb'.
dpkg-deb: building package 'libspoa7.0.0-dbgsym' in '../libspoa7.0.0-dbgsym_4.0.8-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../spoa_4.0.8-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../spoa_4.0.8-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-12-02T05:52:53Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
spoa_4.0.8-1_armhf.changes:
---------------------------
Format: 1.8
Date: Tue, 29 Nov 2022 21:26:11 +0100
Source: spoa
Binary: libspoa-dev libspoa7.0.0 libspoa7.0.0-dbgsym spoa spoa-dbgsym
Architecture: armhf
Version: 4.0.8-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
libspoa-dev - SIMD partial order alignment library (development files)
libspoa7.0.0 - SIMD partial order alignment library
spoa - SIMD partial order alignment tool
Changes:
spoa (4.0.8-1) unstable; urgency=medium
.
* Fix watch file
* New upstream version
* Upstream provides cmake instead of pkgconfig
* Update symbols
* No need to mention Files-Excluded any more
Checksums-Sha1:
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Checksums-Sha256:
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Files:
867a3ca2ec3471f3ee13e0a0547981ea 9348 libdevel optional libspoa-dev_4.0.8-1_armhf.deb
c8d5c3d2f78ca62b1dd9a60e664da687 614792 debug optional libspoa7.0.0-dbgsym_4.0.8-1_armhf.deb
befb4d18782bcb59f90c6212830381d8 53436 libs optional libspoa7.0.0_4.0.8-1_armhf.deb
38d97ab931d62d5bec92301c4c455dc4 234364 debug optional spoa-dbgsym_4.0.8-1_armhf.deb
23d1d5d5357c2454a6a06dc84aa78d00 7423 science optional spoa_4.0.8-1_armhf.buildinfo
ee023ddca6244cec56042e6f2c23bdac 33288 science optional spoa_4.0.8-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
libspoa-dev_4.0.8-1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 9348 bytes: control archive=1100 bytes.
816 bytes, 20 lines control
789 bytes, 10 lines md5sums
Package: libspoa-dev
Source: spoa
Version: 4.0.8-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 42
Depends: libspoa7.0.0 (= 4.0.8-1), libcereal-dev
Section: libdevel
Priority: optional
Multi-Arch: same
Homepage: https://github.com/rvaser/spoa
Description: SIMD partial order alignment library (development files)
Spoa (SIMD POA) is a c++ implementation of the partial order alignment
(POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
is used to generate consensus sequences (as described in
10.1093/bioinformatics/btg109). It supports three alignment modes: local
(Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
(overlap).
.
This package contains the static library and the header files.
drwxr-xr-x root/root 0 2022-11-29 20:26 ./
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/include/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/include/spoa/
-rw-r--r-- root/root 2195 2021-02-07 13:11 ./usr/include/spoa/alignment_engine.hpp
-rw-r--r-- root/root 261 2021-02-07 13:11 ./usr/include/spoa/architectures.hpp
-rw-r--r-- root/root 7653 2021-02-07 13:11 ./usr/include/spoa/graph.hpp
-rw-r--r-- root/root 163 2021-02-07 13:11 ./usr/include/spoa/spoa.hpp
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/arm-linux-gnueabihf/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/arm-linux-gnueabihf/cmake/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/
-rw-r--r-- root/root 1478 2022-11-29 20:26 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfig.cmake
-rw-r--r-- root/root 2878 2022-11-29 20:26 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaConfigVersion.cmake
-rw-r--r-- root/root 1398 2022-11-29 20:26 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets-release.cmake
-rw-r--r-- root/root 4756 2022-11-29 20:26 ./usr/lib/arm-linux-gnueabihf/cmake/spoa/spoaTargets.cmake
lrwxrwxrwx root/root 0 2022-11-29 20:26 ./usr/lib/arm-linux-gnueabihf/libspoa.so -> libspoa.so.7.0.0
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/doc/libspoa-dev/
-rw-r--r-- root/root 1791 2022-11-29 20:26 ./usr/share/doc/libspoa-dev/changelog.Debian.gz
-rw-r--r-- root/root 1353 2022-11-29 20:26 ./usr/share/doc/libspoa-dev/copyright
libspoa7.0.0-dbgsym_4.0.8-1_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 614792 bytes: control archive=556 bytes.
399 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: libspoa7.0.0-dbgsym
Source: spoa
Version: 4.0.8-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 625
Depends: libspoa7.0.0 (= 4.0.8-1)
Section: debug
Priority: optional
Multi-Arch: same
Description: debug symbols for libspoa7.0.0
Build-Ids: f9eda2b004961baabcbe883e3a164a5be7aeec7c
drwxr-xr-x root/root 0 2022-11-29 20:26 ./
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/debug/.build-id/f9/
-rw-r--r-- root/root 629152 2022-11-29 20:26 ./usr/lib/debug/.build-id/f9/eda2b004961baabcbe883e3a164a5be7aeec7c.debug
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-11-29 20:26 ./usr/share/doc/libspoa7.0.0-dbgsym -> libspoa7.0.0
libspoa7.0.0_4.0.8-1_armhf.deb
------------------------------
new Debian package, version 2.0.
size 53436 bytes: control archive=980 bytes.
788 bytes, 20 lines control
231 bytes, 3 lines md5sums
38 bytes, 1 lines shlibs
68 bytes, 2 lines triggers
Package: libspoa7.0.0
Source: spoa
Version: 4.0.8-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 144
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 11)
Section: libs
Priority: optional
Multi-Arch: same
Homepage: https://github.com/rvaser/spoa
Description: SIMD partial order alignment library
Spoa (SIMD POA) is a c++ implementation of the partial order alignment
(POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
is used to generate consensus sequences (as described in
10.1093/bioinformatics/btg109). It supports three alignment modes: local
(Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
(overlap).
.
This package contains the shared library.
drwxr-xr-x root/root 0 2022-11-29 20:26 ./
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/arm-linux-gnueabihf/
-rw-r--r-- root/root 132512 2022-11-29 20:26 ./usr/lib/arm-linux-gnueabihf/libspoa.so.7.0.0
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/doc/libspoa7.0.0/
-rw-r--r-- root/root 1793 2022-11-29 20:26 ./usr/share/doc/libspoa7.0.0/changelog.Debian.gz
-rw-r--r-- root/root 1353 2022-11-29 20:26 ./usr/share/doc/libspoa7.0.0/copyright
spoa-dbgsym_4.0.8-1_armhf.deb
-----------------------------
new Debian package, version 2.0.
size 234364 bytes: control archive=532 bytes.
358 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: spoa-dbgsym
Source: spoa
Version: 4.0.8-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 248
Depends: spoa (= 4.0.8-1)
Section: debug
Priority: optional
Description: debug symbols for spoa
Build-Ids: c40aa97e1a86933f4ff3a8323498a5b0cd7ce647
drwxr-xr-x root/root 0 2022-11-29 20:26 ./
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/lib/debug/.build-id/c4/
-rw-r--r-- root/root 243104 2022-11-29 20:26 ./usr/lib/debug/.build-id/c4/0aa97e1a86933f4ff3a8323498a5b0cd7ce647.debug
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-11-29 20:26 ./usr/share/doc/spoa-dbgsym -> spoa
spoa_4.0.8-1_armhf.deb
----------------------
new Debian package, version 2.0.
size 33288 bytes: control archive=932 bytes.
750 bytes, 16 lines control
391 bytes, 6 lines md5sums
Package: spoa
Version: 4.0.8-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 97
Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5), libspoa7.0.0 (>= 4.0.8), libstdc++6 (>= 11), zlib1g (>= 1:1.1.4)
Section: science
Priority: optional
Homepage: https://github.com/rvaser/spoa
Description: SIMD partial order alignment tool
Spoa (SIMD POA) is a c++ implementation of the partial order alignment
(POA) algorithm (as described in 10.1093/bioinformatics/18.3.452) which
is used to generate consensus sequences (as described in
10.1093/bioinformatics/btg109). It supports three alignment modes: local
(Smith-Waterman), global (Needleman-Wunsch) and semi-global alignment
(overlap).
drwxr-xr-x root/root 0 2022-11-29 20:26 ./
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/bin/
-rwxr-xr-x root/root 67192 2022-11-29 20:26 ./usr/bin/spoa
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/doc/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/doc/spoa/
-rw-r--r-- root/root 1790 2022-11-29 20:26 ./usr/share/doc/spoa/changelog.Debian.gz
-rw-r--r-- root/root 1353 2022-11-29 20:26 ./usr/share/doc/spoa/copyright
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/doc/spoa/examples/
-rw-r--r-- root/root 15064 2022-11-29 20:26 ./usr/share/doc/spoa/examples/sample.fastq.gz
-rw-r--r-- root/root 294 2022-11-29 20:26 ./usr/share/doc/spoa/run-unit-test
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/man/
drwxr-xr-x root/root 0 2022-11-29 20:26 ./usr/share/man/man1/
-rw-r--r-- root/root 700 2022-11-29 20:26 ./usr/share/man/man1/spoa.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 21324
Build-Time: 485
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 369
Job: spoa_4.0.8-1
Machine Architecture: armhf
Package: spoa
Package-Time: 909
Source-Version: 4.0.8-1
Space: 21324
Status: successful
Version: 4.0.8-1
--------------------------------------------------------------------------------
Finished at 2022-12-02T05:52:53Z
Build needed 00:15:09, 21324k disc space