spaln →
2.4.1+dfsg-3 →
armhf → 2021-01-26 22:25:45
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| spaln 2.4.1+dfsg-3 (armhf) Tue, 26 Jan 2021 22:19:14 +0000 |
+==============================================================================+
Package: spaln
Version: 2.4.1+dfsg-3
Source Version: 2.4.1+dfsg-3
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-4b559b82-a498-4299-9f53-f77aff19622f' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/spaln-8M5ZEY/resolver-iiUlT4' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.1 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.1 MB]
Fetched 25.2 MB in 14s (1748 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'spaln' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/spaln.git
Please use:
git clone https://salsa.debian.org/med-team/spaln.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 19.7 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main spaln 2.4.1+dfsg-3 (dsc) [2037 B]
Get:2 http://172.17.0.1/private bullseye-staging/main spaln 2.4.1+dfsg-3 (tar) [19.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main spaln 2.4.1+dfsg-3 (diff) [4112 B]
Fetched 19.7 MB in 9s (2257 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/spaln-8M5ZEY/spaln-2.4.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/spaln-8M5ZEY' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [378 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [460 B]
Fetched 1795 B in 0s (48.4 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils debhelper
dh-autoreconf dh-strip-nondeterminism dwz file gettext gettext-base
groff-base intltool-debian libarchive-zip-perl libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libicu67 libmagic-mgc libmagic1
libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0 libxml2
m4 man-db po-debconf sbuild-build-depends-main-dummy sensible-utils
zlib1g-dev
0 upgraded, 33 newly installed, 0 to remove and 72 not upgraded.
Need to get 17.6 MB of archives.
After this operation, 65.2 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [876 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf bsdextrautils armhf 2.36.1-6 [137 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-3 [170 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-3 [32.4 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-3 [509 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.1 [188 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.10.0-1 [25.6 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.10.0-1 [15.3 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-3 [162 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20210118-1 [163 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-6 [8289 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-3 [1214 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.1 [1010 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 17.6 MB in 9s (2048 kB/s)
Selecting previously unselected package bsdextrautils.
(Reading database ... 12455 files and directories currently installed.)
Preparing to unpack .../00-bsdextrautils_2.36.1-6_armhf.deb ...
Unpacking bsdextrautils (2.36.1-6) ...
Selecting previously unselected package libuchardet0:armhf.
Preparing to unpack .../01-libuchardet0_0.0.7-1_armhf.deb ...
Unpacking libuchardet0:armhf (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../02-groff-base_1.22.4-5_armhf.deb ...
Unpacking groff-base (1.22.4-5) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../03-libpipeline1_1.5.3-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../04-man-db_2.9.3-2_armhf.deb ...
Unpacking man-db (2.9.3-2) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ...
Unpacking sensible-utils (0.0.14) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_armhf.deb ...
Unpacking libmagic-mgc (1:5.39-3) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../07-libmagic1_1%3a5.39-3_armhf.deb ...
Unpacking libmagic1:armhf (1:5.39-3) ...
Selecting previously unselected package file.
Preparing to unpack .../08-file_1%3a5.39-3_armhf.deb ...
Unpacking file (1:5.39-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../09-gettext-base_0.21-3_armhf.deb ...
Unpacking gettext-base (0.21-3) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../10-libsigsegv2_2.12-3_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-3) ...
Selecting previously unselected package m4.
Preparing to unpack .../11-m4_1.4.18-5_armhf.deb ...
Unpacking m4 (1.4.18-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../12-autoconf_2.69-14_all.deb ...
Unpacking autoconf (2.69-14) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ...
Unpacking autotools-dev (20180224.1+nmu1) ...
Selecting previously unselected package automake.
Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ...
Unpacking automake (1:1.16.3-2) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../15-autopoint_0.21-3_all.deb ...
Unpacking autopoint (0.21-3) ...
Selecting previously unselected package libtool.
Preparing to unpack .../16-libtool_2.4.6-15_all.deb ...
Unpacking libtool (2.4.6-15) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../17-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../18-libdebhelper-perl_13.3.1_all.deb ...
Unpacking libdebhelper-perl (13.3.1) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.10.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.10.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../22-dh-strip-nondeterminism_1.10.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.10.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../23-libelf1_0.182-3_armhf.deb ...
Unpacking libelf1:armhf (0.182-3) ...
Selecting previously unselected package dwz.
Preparing to unpack .../24-dwz_0.13+20210118-1_armhf.deb ...
Unpacking dwz (0.13+20210118-1) ...
Selecting previously unselected package libicu67:armhf.
Preparing to unpack .../25-libicu67_67.1-6_armhf.deb ...
Unpacking libicu67:armhf (67.1-6) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.3_armhf.deb ...
Unpacking libxml2:armhf (2.9.10+dfsg-6.3) ...
Selecting previously unselected package gettext.
Preparing to unpack .../27-gettext_0.21-3_armhf.deb ...
Unpacking gettext (0.21-3) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../30-debhelper_13.3.1_all.deb ...
Unpacking debhelper (13.3.1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../31-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Selecting previously unselected package sbuild-build-depends-main-dummy.
Preparing to unpack .../32-sbuild-build-depends-main-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-main-dummy (0.invalid.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up bsdextrautils (2.36.1-6) ...
update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode
Setting up libicu67:armhf (67.1-6) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libdebhelper-perl (13.3.1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.21-3) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libsigsegv2:armhf (2.12-3) ...
Setting up autopoint (0.21-3) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up sensible-utils (0.0.14) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.182-3) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up libfile-stripnondeterminism-perl (1.10.0-1) ...
Setting up gettext (0.21-3) ...
Setting up libtool (2.4.6-15) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.10.0-1) ...
Setting up dwz (0.13+20210118-1) ...
Setting up groff-base (1.22.4-5) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (19) ...
Setting up debhelper (13.3.1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-6+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.35.1-6+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.1-1+rpi1 gcc-10_10.2.1-1+rpi1 libc6-dev_2.31-6+rpi1 libstdc++-10-dev_10.2.1-1+rpi1 libstdc++6_10.2.1-1+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1
Package versions: adduser_3.118 apt_2.1.12+deb11u1 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1-1 binutils_2.35.1-6+rpi1 binutils-arm-linux-gnueabihf_2.35.1-6+rpi1 binutils-common_2.35.1-6+rpi1 bsdextrautils_2.36.1-6 bsdutils_1:2.36.1-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.1-1+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.10.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13+20210118-1 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.1-1+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.1-1+rpi1 gcc-10-base_10.2.1-1+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-5+rpi1 gcc-9-base_9.3.0-19+rpi1 gettext_0.21-3 gettext-base_0.21-3 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libapt-pkg6.0_2.1.12+deb11u1 libarchive-zip-perl_1.68-1 libasan6_10.2.1-1+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-1+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-1 libaudit1_1:3.0-1 libbinutils_2.35.1-6+rpi1 libblkid1_2.36.1-3 libbz2-1.0_1.0.8-4 libc-bin_2.31-6+rpi1 libc-dev-bin_2.31-6+rpi1 libc6_2.31-6+rpi1 libc6-dev_2.31-6+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-1+rpi1 libcom-err2_1.45.6-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-6+rpi1 libctf0_2.35.1-6+rpi1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255+b1 libdebhelper-perl_13.3.1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-3 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.10.0-1 libgcc-10-dev_10.2.1-1+rpi1 libgcc-s1_10.2.1-1+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.6.15-4 libgomp1_10.2.1-1+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed6_3.6-2 libicu67_67.1-6 libidn2-0_2.3.0-4 libisl23_0.23-1 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-3 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-1+rpi1 liblzma5_5.2.4-1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.22-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.0-6 libpipeline1_1.5.3-1 libreadline8_8.1-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-3 libsmartcols1_2.36.1-3 libsqlite3-0_3.34.0-1 libss2_1.45.6-1 libssl1.1_1.1.1i-1 libstdc++-10-dev_10.2.1-1+rpi1 libstdc++6_10.2.1-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-4+rpi1 libtasn1-6_4.16.0-2 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-15 libubsan1_10.2.1-1+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-4+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-3 libxml2_2.9.10+dfsg-6.3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-3 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-6 perl-base_5.32.0-6 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2020e-1 util-linux_2.36.1-3 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: spaln
Binary: spaln, spaln-data
Architecture: any all
Version: 2.4.1+dfsg-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Homepage: http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/spaln
Vcs-Git: https://salsa.debian.org/med-team/spaln.git
Build-Depends: debhelper-compat (= 13), zlib1g-dev
Package-List:
spaln deb science optional arch=any
spaln-data deb science optional arch=all
Checksums-Sha1:
f58464a240ccd32adbc63aea9f87423fa4f42f74 19684856 spaln_2.4.1+dfsg.orig.tar.xz
93a46eb1d3ce903c78696e0e7b9ebc92d325595d 4112 spaln_2.4.1+dfsg-3.debian.tar.xz
Checksums-Sha256:
06623ccee3583a4b91cba3cb814cbeba67dad962efe1e420fd4e1f3860bd89ff 19684856 spaln_2.4.1+dfsg.orig.tar.xz
49537833db0600a8a9f1c5ce6dfaad84cd562b6d29f33f0ad59ca2b5edf20565 4112 spaln_2.4.1+dfsg-3.debian.tar.xz
Files:
b7c79a3f758b08c91a2ed45115a823fc 19684856 spaln_2.4.1+dfsg.orig.tar.xz
9f2151f0800dc4403b4a699be70c52c8 4112 spaln_2.4.1+dfsg-3.debian.tar.xz
-----BEGIN PGP SIGNATURE-----
iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/0mHoRHHRpbGxlQGRl
Ymlhbi5vcmcACgkQV4oElNHGRtHXoA/5Af1VPeRwnfRNfhr5WbXl9WN3v57nTGK+
5IXbWxyQqlcpsuKGPD0KaQiq/Rmw4QfK8dCXpg5fREXPKQxi5Y8N4Z8KeoEzQXNq
3lceqArytGPYEAV3Qrp2dE/Nz4XViRceEiS2/MEyHEm8pXOBMwshD0k8+waKvVLl
/q6BzYgA5tlygef1WvyTcnCKJNT0VC/+pfgXzLI7FiYIotItjr0ex9NTbo7oSThC
gYwyEpwVE51ggJCg1j1hX6aljG+KANMCyNmnn2wTcLACHaivodD5rSVLVQsjFZ5b
NAJ2nzYOjHQD8raydzH+irDr+/9XeTXqbrIt0SkIVwoTodsuVVjLKDW2oGXHsTpD
QkuSo9vaQnMlLawClk+PqrDBPnkG3fYymbg9wHEOWy0IAdgezo2B9CjzWK0uOFfv
R81JMgrw8SGyW8iSRcUZIFyUuAnwDsFO47ky2yH8peAGUmR6f9xNuK4G+oWtyIVS
7sv7IaIA5ruFRHLIYimOsknmH0JMh8xk699cKwoW8oosz1MOEkSnDwUmSzMvz4ow
cVh1cWULo+Ej7+4qDzgEsaiTm6a84qt31u7K9HdJXUEA1XDlICrVJwt8FlV5SfYK
rDOl0H1GDN5LqynXQkowCPejFn71/lctyIIes+CFdbSNp2wWLTAVHgS11dslm6Ot
Kv/X1ZSyL/A=
=Jj8q
-----END PGP SIGNATURE-----
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.RAMSfzpr/trustedkeys.kbx': General error
gpgv: Signature made Tue Jan 5 16:48:58 2021 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./spaln_2.4.1+dfsg-3.dsc
dpkg-source: info: extracting spaln in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking spaln_2.4.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking spaln_2.4.1+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying portability.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-4b559b82-a498-4299-9f53-f77aff19622f
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c56864
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package spaln
dpkg-buildpackage: info: source version 2.4.1+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
[ -r src/Makefile ] && make -C src clean || true
rm -f src/dbs.h src/iolib.h src/*.o src/*.a src/Makefile
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/spaln.substvars debian/spaln-data.substvars debian/files
rm -fr -- debian/spaln/ debian/tmp/ debian/spaln-data/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd src && AR="arm-linux-gnueabihf-ar rc" ./configure --exec_prefix=/usr/bin
OK, CXX=arm-linux-gnueabihf-g++ CFLAGS=-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto
1 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto
binaries install to /usr/bin
tables install to /usr/share/spaln/table
alndbs install to /usr/share/spaln/seqdb
wrote Makefile
wrote files
OK. try make and make install. good luck!
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin -C src
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c spaln.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from spaln.cc:25:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from spaln.cc:25:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c blksrc.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from blksrc.cc:22:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from blksrc.cc:22:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
blksrc.cc: In function ‘void idx2SeqLenStat(const char*, SeqLenStat&)’:
blksrc.cc:1003:19: warning: comparison of integer expressions of different signedness: ‘INT’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare]
1003 | if (sls.maxv < widx->seqlen) sls.maxv = widx->seqlen;
| ~~~~~~~~~^~~~~~~~~~~~~~
blksrc.cc: In member function ‘int SrchBlk::FindHsp(BPAIR*)’:
blksrc.cc:2528:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘INT’ {aka ‘unsigned int’} [-Wsign-compare]
2528 | if (curgr - gener >= OutPrm.MaxOut - 1) {
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
blksrc.cc: In member function ‘int SrchBlk::TestOutput(int)’:
blksrc.cc:2733:13: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 11 has type ‘int’ [-Wformat=]
2733 | printf(ofmt, query->sqname(), dir[d / 2], query->left, query->right, cid, p, q,
| ^~~~
......
2736 | bh4->as[d][bh4->maxs[d]] - query->at(0),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int
blksrc.cc:2733:13: warning: format ‘%ld’ expects argument of type ‘long int’, but argument 12 has type ‘int’ [-Wformat=]
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c aln2.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from aln2.cc:23:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from aln2.cc:23:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c dbs.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from dbs.cc:22:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from dbs.cc:22:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
dbs.cc: In member function ‘Seq* Seq::getdbseq(DbsDt*, const char*, int, bool)’:
dbs.cc:821:9: warning: comparison of integer expressions of different signedness: ‘INT’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare]
821 | if (n > record->seqlen) n = record->seqlen;
| ~~^~~~~~~~~~~~~~~~
dbs.cc:826:9: warning: comparison of integer expressions of different signedness: ‘INT’ {aka ‘unsigned int’} and ‘long int’ [-Wsign-compare]
826 | if (n == record->seqlen) break;
| ~~^~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gaps.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from gaps.cc:22:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from gaps.cc:22:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c codepot.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from codepot.cc:26:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from codepot.cc:26:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c divseq.cc
In file included from stdtype.h:34,
from cmn.h:25,
from divseq.cc:22:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from divseq.h:26,
from divseq.cc:23:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gsinfo.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from gsinfo.cc:23:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from gsinfo.cc:23:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2b1.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from fwd2b1.cc:28:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from fwd2b1.cc:28:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2d1.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from fwd2d1.cc:29:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from fwd2d1.cc:29:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2h1.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from fwd2h1.cc:29:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from fwd2h1.cc:29:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2s1.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from fwd2s1.cc:26:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from fwd2s1.cc:26:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c bitpat.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from bitpat.cc:23:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from bitpat.cc:23:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c seq.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from seq.cc:23:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from seq.cc:23:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
seq.cc: In member function ‘Seq* Seq::aliaseq(Seq*, bool)’:
seq.cc:408:32: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class Seq’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
408 | memcpy(dest, this, sizeof(Seq));
| ^
In file included from seq.cc:23:
seq.h:252:7: note: ‘class Seq’ declared here
252 | class Seq {
| ^~~
seq.cc: In member function ‘void Seq::seqalloc(int, int, bool)’:
seq.cc:477:26: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=]
477 | } catch (std::bad_alloc ba) {
| ^~
seq.cc: In member function ‘CHAR* Seq::seq_realloc()’:
seq.cc:499:26: warning: catching polymorphic type ‘class std::bad_alloc’ by value [-Wcatch-value=]
499 | } catch (std::bad_alloc ba) {
| ^~
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c simmtx.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from simmtx.cc:25:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from simmtx.cc:25:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sqpr.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from divseq.h:26,
from sqpr.cc:22:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from divseq.h:26,
from sqpr.cc:22:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c utilseq.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from utilseq.cc:22:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from utilseq.cc:22:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c vmf.cc
In file included from stdtype.h:34,
from cmn.h:25,
from vmf.cc:22:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c wln.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from wln.cc:22:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from wln.cc:22:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c boyer_moore.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from boyer_moore.h:4,
from boyer_moore.cc:22:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from boyer_moore.h:4,
from boyer_moore.cc:22:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
arm-linux-gnueabihf-ar rc sblib.a aln2.o dbs.o gaps.o codepot.o divseq.o gsinfo.o \
fwd2b1.o fwd2d1.o fwd2h1.o fwd2s1.o bitpat.o \
seq.o simmtx.o sqpr.o utilseq.o vmf.o wln.o boyer_moore.o
arm-linux-gnueabihf-ranlib sblib.a
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c clib.cc
In file included from clib.cc:34:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c iolib.cc
In file included from iolib.cc:33:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c mfile.cc
In file included from stdtype.h:34,
from mfile.cc:22:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sets.cc
In file included from stdtype.h:34,
from sets.cc:22:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c supprime.cc
In file included from stdtype.h:34,
from supprime.cc:13:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
arm-linux-gnueabihf-ar rc clib.a clib.o iolib.o mfile.o sets.o supprime.o
arm-linux-gnueabihf-ranlib clib.a
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o spaln spaln.o blksrc.o sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o sortgrcd sortgrcd.cc sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from sortgrcd.h:26,
from sortgrcd.cc:26:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from sortgrcd.h:26,
from sortgrcd.cc:26:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
sortgrcd.cc: In function ‘int count_record(const char*, const char*, size_t)’:
sortgrcd.cc:994:11: warning: ISO C++ forbids variable length array ‘buf’ [-Wvla]
994 | char buf[rcdsize];
| ^~~
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makmdm makmdm.cc clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from makmdm.cc:28:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from makmdm.cc:28:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
makmdm.cc: In function ‘void exp_qdt(double (*)[20], double*, double, int)’:
makmdm.cc:396:15: warning: unused variable ‘q’ [-Wunused-variable]
396 | static double q[2][20][20] = {
| ^
makmdm.cc: At global scope:
makmdm.cc:396:15: warning: ‘q’ defined but not used [-Wunused-variable]
arm-linux-gnueabihf-g++ -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makdbs makdbs.cc sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from makdbs.h:25,
from makdbs.cc:24:
clib.h:1076:51: warning: extra ‘;’ [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from makdbs.h:25,
from makdbs.cc:24:
codepot.h:171:2: warning: extra ‘;’ [-Wpedantic]
171 | };
| ^
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_prep -a
rm -f -- debian/spaln.substvars
rm -fr -- debian/.debhelper/generated/spaln/ debian/spaln/ debian/tmp/
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
/usr/bin/make table_dir=/<<PKGBUILDDIR>>/debian/spaln-data//usr/share/spaln/table alndbs_dir=/<<PKGBUILDDIR>>/debian/spaln-data//usr/share/spaln/seqdb exec_prefix=/<<PKGBUILDDIR>>/debian/spaln//usr/bin -C src install
make[2]: Entering directory '/<<PKGBUILDDIR>>/src'
test -d /<<PKGBUILDDIR>>/debian/spaln//usr/bin || mkdir -p /<<PKGBUILDDIR>>/debian/spaln//usr/bin
cp spaln sortgrcd makmdm makdbs /<<PKGBUILDDIR>>/debian/spaln//usr/bin
test -d /<<PKGBUILDDIR>>/debian/spaln-data//usr/share/spaln/table || mkdir -p /<<PKGBUILDDIR>>/debian/spaln-data//usr/share/spaln/table
./makmdm /<<PKGBUILDDIR>>/debian/spaln-data//usr/share/spaln/table
7.6862 5.1057 4.2546 5.1269 2.0279 4.1061 6.1820 7.4714 2.2983 5.2569
9.1111 5.9498 2.3414 4.0530 5.0532 6.8225 5.8518 1.4336 3.2303 6.6374
Pam = 0 Norl fact = 106.899 trace = 106.899
Pam = 10 Norl fact = 13.996 trace = 41.995
Pam = 20 Norl fact = 15.588 trace = 45.299
Pam = 30 Norl fact = 16.894 trace = 47.531
Pam = 40 Norl fact = 18.094 trace = 49.266
Pam = 50 Norl fact = 19.249 trace = 50.701
Pam = 60 Norl fact = 20.386 trace = 51.928
Pam = 70 Norl fact = 21.522 trace = 52.997
Pam = 80 Norl fact = 22.667 trace = 53.943
Pam = 90 Norl fact = 23.828 trace = 54.788
Pam = 100 Norl fact = 25.012 trace = 55.547
Pam = 110 Norl fact = 26.222 trace = 56.234
Pam = 120 Norl fact = 27.462 trace = 56.858
Pam = 130 Norl fact = 28.735 trace = 57.427
Pam = 140 Norl fact = 30.044 trace = 57.946
Pam = 150 Norl fact = 31.391 trace = 58.421
Pam = 160 Norl fact = 32.778 trace = 58.858
Pam = 170 Norl fact = 34.208 trace = 59.259
Pam = 180 Norl fact = 35.683 trace = 59.629
Pam = 190 Norl fact = 37.204 trace = 59.970
Pam = 200 Norl fact = 38.774 trace = 60.286
Pam = 210 Norl fact = 40.394 trace = 60.580
Pam = 220 Norl fact = 42.066 trace = 60.854
Pam = 230 Norl fact = 43.793 trace = 61.110
Pam = 240 Norl fact = 45.577 trace = 61.350
Pam = 250 Norl fact = 47.419 trace = 61.576
Pam = 260 Norl fact = 49.322 trace = 61.791
Pam = 270 Norl fact = 51.287 trace = 61.996
Pam = 280 Norl fact = 53.318 trace = 62.191
Pam = 290 Norl fact = 55.415 trace = 62.380
Pam = 300 Norl fact = 57.582 trace = 62.563
test -d /<<PKGBUILDDIR>>/debian/spaln-data//usr/share/spaln/seqdb || mkdir -p /<<PKGBUILDDIR>>/debian/spaln-data//usr/share/spaln/seqdb
make[2]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_install -a
install -d debian/.debhelper/generated/spaln
install -d debian/.debhelper/generated/spaln-data
dh_installdocs -a
install -d debian/spaln/usr/share/doc/spaln
cp --reflink=auto -a ./debian/README.Debian debian/spaln/usr/share/doc/spaln
cp --reflink=auto -a ./doc/readme.html debian/spaln/usr/share/doc/spaln
cp --reflink=auto -a ./README.md debian/spaln/usr/share/doc/spaln
chmod -R u\+rw,go=rX debian/spaln/usr/share/doc
install -p -m0644 debian/README.Debian debian/spaln/usr/share/doc/spaln/README.Debian
install -p -m0644 debian/copyright debian/spaln/usr/share/doc/spaln/copyright
dh_installchangelogs -a
install -p -m0644 debian/changelog debian/spaln/usr/share/doc/spaln/changelog.Debian
dh_installman -a
install -d debian/spaln/usr/share/man/man1/
install -p -m0644 ./sortgrcd.1 debian/spaln/usr/share/man/man1/sortgrcd.1
install -p -m0644 ./spaln.1 debian/spaln/usr/share/man/man1/spaln.1
man-recode --to-code UTF-8 --suffix .dh-new debian/spaln/usr/share/man/man1/sortgrcd.1
man-recode --to-code UTF-8 --suffix .dh-new debian/spaln/usr/share/man/man1/spaln.1
mv debian/spaln/usr/share/man/man1/spaln.1.dh-new debian/spaln/usr/share/man/man1/spaln.1
chmod 0644 -- debian/spaln/usr/share/man/man1/spaln.1
mv debian/spaln/usr/share/man/man1/sortgrcd.1.dh-new debian/spaln/usr/share/man/man1/sortgrcd.1
chmod 0644 -- debian/spaln/usr/share/man/man1/sortgrcd.1
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
cd debian/spaln
chmod a-x usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1
gzip -9nf usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms -a
find debian/spaln ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/spaln/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/spaln/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/spaln/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/spaln -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/spaln/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing -a
dh_dwz -a -a
install -d debian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf
dwz -mdebian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug -- debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/spaln
objcopy --compress-debug-sections debian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug
dh_strip -a -a
install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/7f
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makdbs debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/7f/52b460478499b968ea7b5a0e8a8f9610026ed2.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/7f/52b460478499b968ea7b5a0e8a8f9610026ed2.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makdbs
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/7f/52b460478499b968ea7b5a0e8a8f9610026ed2.debug debian/spaln/usr/bin/makdbs
install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/b5
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makmdm debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/b5/4f35597cefc4ce7c98c4aa8227a24bcb4ab4dc.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/b5/4f35597cefc4ce7c98c4aa8227a24bcb4ab4dc.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makmdm
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/b5/4f35597cefc4ce7c98c4aa8227a24bcb4ab4dc.debug debian/spaln/usr/bin/makmdm
install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/ac
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/sortgrcd debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/ac/595aada09cb1416be42e37dc6bff5e0005c612.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/ac/595aada09cb1416be42e37dc6bff5e0005c612.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/sortgrcd
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/ac/595aada09cb1416be42e37dc6bff5e0005c612.debug debian/spaln/usr/bin/sortgrcd
install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a0
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/spaln debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a0/ea6932353a9d1207f981257004db3e489c1e00.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a0/ea6932353a9d1207f981257004db3e489c1e00.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/spaln
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a0/ea6932353a9d1207f981257004db3e489c1e00.debug debian/spaln/usr/bin/spaln
install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/spaln/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/spaln/usr/lib/debug
install -d debian/.debhelper/spaln/dbgsym-root/usr/share/doc
ln -s spaln debian/.debhelper/spaln/dbgsym-root/usr/share/doc/spaln-dbgsym
dh_makeshlibs -a -a
rm -f debian/spaln/DEBIAN/shlibs
dh_shlibdeps -a -a
install -d debian/spaln/DEBIAN
dpkg-shlibdeps -Tdebian/spaln.substvars debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/spaln
dpkg-shlibdeps: warning: debian/spaln/usr/bin/makdbs contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/spaln/usr/bin/spaln contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/spaln/usr/bin/sortgrcd contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/spaln/usr/bin/makmdm contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/spaln debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/makmdm were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
echo misc:Depends= >> debian/spaln.substvars
echo misc:Pre-Depends= >> debian/spaln.substvars
install -d debian/.debhelper/spaln/dbgsym-root/DEBIAN
dpkg-gencontrol -pspaln -ldebian/changelog -Tdebian/spaln.substvars -Pdebian/.debhelper/spaln/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=spaln-dbgsym "-DDepends=spaln (= \${binary:Version})" "-DDescription=debug symbols for spaln" "-DBuild-Ids=7f52b460478499b968ea7b5a0e8a8f9610026ed2 a0ea6932353a9d1207f981257004db3e489c1e00 ac595aada09cb1416be42e37dc6bff5e0005c612 b54f35597cefc4ce7c98c4aa8227a24bcb4ab4dc" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pspaln -ldebian/changelog -Tdebian/spaln.substvars -Pdebian/spaln
chmod 0644 -- debian/spaln/DEBIAN/control
dh_md5sums -a
cd debian/spaln >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/spaln/DEBIAN/md5sums
cd debian/.debhelper/spaln/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a
dpkg-deb --root-owner-group --build debian/spaln ..
dpkg-deb --root-owner-group --build debian/.debhelper/spaln/dbgsym-root ..
dpkg-deb: building package 'spaln-dbgsym' in '../spaln-dbgsym_2.4.1+dfsg-3_armhf.deb'.
dpkg-deb: building package 'spaln' in '../spaln_2.4.1+dfsg-3_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../spaln_2.4.1+dfsg-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-01-26T22:25:30Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
spaln_2.4.1+dfsg-3_armhf.changes:
---------------------------------
Format: 1.8
Date: Thu, 24 Dec 2020 13:44:57 +0100
Source: spaln
Binary: spaln spaln-dbgsym
Architecture: armhf
Version: 2.4.1+dfsg-3
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Helmut Grohne <helmut@subdivi.de>
Description:
spaln - splicing-aware transcript-alignment to genomic DNA
Closes: 978059
Changes:
spaln (2.4.1+dfsg-3) unstable; urgency=medium
.
* Team upload.
* Improve cross building: Supply cross tools. (Closes: #978059)
Checksums-Sha1:
ee57ebf8d011545627ee12c458968073e49245de 1032944 spaln-dbgsym_2.4.1+dfsg-3_armhf.deb
e88fb5c3d7a240028133e70af224f9dbbb05279c 4893 spaln_2.4.1+dfsg-3_armhf.buildinfo
57a5d478315fd6249815386ceb437e3dfb63b59d 285952 spaln_2.4.1+dfsg-3_armhf.deb
Checksums-Sha256:
7a184e7347e5f985f88b1cdc4f1b78f322db0ab60074bc7096de3f9eae7fe501 1032944 spaln-dbgsym_2.4.1+dfsg-3_armhf.deb
aa85332d2adb708ac4b269fb4d70138015da8bb9cab81b1bfc7ab796527170a8 4893 spaln_2.4.1+dfsg-3_armhf.buildinfo
2f0c9c1730cbbbecd6049751f429b67cfbb9101d146605022f9be51d39d85ca8 285952 spaln_2.4.1+dfsg-3_armhf.deb
Files:
7b9e256658eafa2f60eacd6c776b61f2 1032944 debug optional spaln-dbgsym_2.4.1+dfsg-3_armhf.deb
9aa747d0b9eabae80579dd0d8aa65d9a 4893 science optional spaln_2.4.1+dfsg-3_armhf.buildinfo
37b197cf99a5156b59697e8bc69d6c34 285952 science optional spaln_2.4.1+dfsg-3_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: spaln
Binary: spaln spaln-dbgsym
Architecture: armhf
Version: 2.4.1+dfsg-3
Checksums-Md5:
7b9e256658eafa2f60eacd6c776b61f2 1032944 spaln-dbgsym_2.4.1+dfsg-3_armhf.deb
37b197cf99a5156b59697e8bc69d6c34 285952 spaln_2.4.1+dfsg-3_armhf.deb
Checksums-Sha1:
ee57ebf8d011545627ee12c458968073e49245de 1032944 spaln-dbgsym_2.4.1+dfsg-3_armhf.deb
57a5d478315fd6249815386ceb437e3dfb63b59d 285952 spaln_2.4.1+dfsg-3_armhf.deb
Checksums-Sha256:
7a184e7347e5f985f88b1cdc4f1b78f322db0ab60074bc7096de3f9eae7fe501 1032944 spaln-dbgsym_2.4.1+dfsg-3_armhf.deb
2f0c9c1730cbbbecd6049751f429b67cfbb9101d146605022f9be51d39d85ca8 285952 spaln_2.4.1+dfsg-3_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Tue, 26 Jan 2021 22:25:29 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.69-14),
automake (= 1:1.16.3-2),
autopoint (= 0.21-3),
autotools-dev (= 20180224.1+nmu1),
base-files (= 11+rpi1),
base-passwd (= 3.5.48),
bash (= 5.1-1),
binutils (= 2.35.1-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.35.1-6+rpi1),
binutils-common (= 2.35.1-6+rpi1),
bsdextrautils (= 2.36.1-6),
bsdutils (= 1:2.36.1-3),
build-essential (= 12.8),
bzip2 (= 1.0.8-4),
coreutils (= 8.32-4),
cpp (= 4:10.2.0-1+rpi1),
cpp-10 (= 10.2.1-1+rpi1),
dash (= 0.5.11+git20200708+dd9ef66-5),
debconf (= 1.5.74),
debhelper (= 13.3.1),
debianutils (= 4.11.2),
dh-autoreconf (= 19),
dh-strip-nondeterminism (= 1.10.0-1),
diffutils (= 1:3.7-3),
dpkg (= 1.20.5+rpi1),
dpkg-dev (= 1.20.5+rpi1),
dwz (= 0.13+20210118-1),
file (= 1:5.39-3),
findutils (= 4.7.0+git20201010-2),
g++ (= 4:10.2.0-1+rpi1),
g++-10 (= 10.2.1-1+rpi1),
gcc (= 4:10.2.0-1+rpi1),
gcc-10 (= 10.2.1-1+rpi1),
gcc-10-base (= 10.2.1-1+rpi1),
gettext (= 0.21-3),
gettext-base (= 0.21-3),
grep (= 3.6-1),
groff-base (= 1.22.4-5),
gzip (= 1.10-2),
hostname (= 3.23),
init-system-helpers (= 1.60),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-9),
libarchive-zip-perl (= 1.68-1),
libasan6 (= 10.2.1-1+rpi1),
libatomic1 (= 10.2.1-1+rpi1),
libattr1 (= 1:2.4.48-6),
libaudit-common (= 1:3.0-1),
libaudit1 (= 1:3.0-1),
libbinutils (= 2.35.1-6+rpi1),
libblkid1 (= 2.36.1-3),
libbz2-1.0 (= 1.0.8-4),
libc-bin (= 2.31-6+rpi1),
libc-dev-bin (= 2.31-6+rpi1),
libc6 (= 2.31-6+rpi1),
libc6-dev (= 2.31-6+rpi1),
libcap-ng0 (= 0.7.9-2.2+b1),
libcc1-0 (= 10.2.1-1+rpi1),
libcom-err2 (= 1.45.6-1),
libcrypt-dev (= 1:4.4.17-1),
libcrypt1 (= 1:4.4.17-1),
libctf-nobfd0 (= 2.35.1-6+rpi1),
libctf0 (= 2.35.1-6+rpi1),
libdb5.3 (= 5.3.28+dfsg1-0.6),
libdebconfclient0 (= 0.255+b1),
libdebhelper-perl (= 13.3.1),
libdpkg-perl (= 1.20.5+rpi1),
libelf1 (= 0.182-3),
libfile-stripnondeterminism-perl (= 1.10.0-1),
libgcc-10-dev (= 10.2.1-1+rpi1),
libgcc-s1 (= 10.2.1-1+rpi1),
libgcrypt20 (= 1.8.7-2),
libgdbm-compat4 (= 1.18.1-5.1),
libgdbm6 (= 1.18.1-5.1),
libgmp10 (= 2:6.2.1+dfsg-1),
libgomp1 (= 10.2.1-1+rpi1),
libgpg-error0 (= 1.38-2),
libgssapi-krb5-2 (= 1.18.3-4),
libicu67 (= 67.1-6),
libisl23 (= 0.23-1),
libk5crypto3 (= 1.18.3-4),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.18.3-4),
libkrb5support0 (= 1.18.3-4),
liblz4-1 (= 1.9.3-1+rpi1),
liblzma5 (= 5.2.4-1),
libmagic-mgc (= 1:5.39-3),
libmagic1 (= 1:5.39-3),
libmount1 (= 2.36.1-3),
libmpc3 (= 1.2.0-1),
libmpfr6 (= 4.1.0-3),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libpam-modules (= 1.3.1-5),
libpam-modules-bin (= 1.3.1-5),
libpam-runtime (= 1.3.1-5),
libpam0g (= 1.3.1-5),
libpcre2-8-0 (= 10.36-2),
libpcre3 (= 2:8.39-13),
libperl5.32 (= 5.32.0-6),
libpipeline1 (= 1.5.3-1),
libseccomp2 (= 2.5.1-1+rpi1),
libselinux1 (= 3.1-2+b1),
libsigsegv2 (= 2.12-3),
libsmartcols1 (= 2.36.1-3),
libssl1.1 (= 1.1.1i-1),
libstdc++-10-dev (= 10.2.1-1+rpi1),
libstdc++6 (= 10.2.1-1+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 246.6-4+rpi1),
libtinfo6 (= 6.2+20201114-1),
libtirpc-common (= 1.2.6-3),
libtirpc-dev (= 1.2.6-3),
libtirpc3 (= 1.2.6-3),
libtool (= 2.4.6-15),
libubsan1 (= 10.2.1-1+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 246.6-4+rpi1),
libunistring2 (= 0.9.10-4),
libuuid1 (= 2.36.1-3),
libxml2 (= 2.9.10+dfsg-6.3),
libzstd1 (= 1.4.5+dfsg-4+rpi1),
linux-libc-dev (= 5.9.6-1+rpi1+b1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-5),
make (= 4.3-4),
man-db (= 2.9.3-2),
mawk (= 1.3.4.20200120-2),
ncurses-base (= 6.2+20201114-1),
ncurses-bin (= 6.2+20201114-1),
patch (= 2.7.6-6),
perl (= 5.32.0-6),
perl-base (= 5.32.0-6),
perl-modules-5.32 (= 5.32.0-6),
po-debconf (= 1.0.21+nmu1),
sed (= 4.7-1),
sensible-utils (= 0.0.14),
sysvinit-utils (= 2.96-5),
tar (= 1.32+dfsg-1+rpi1),
util-linux (= 2.36.1-3),
xz-utils (= 5.2.4-1),
zlib1g (= 1:1.2.11.dfsg-2),
zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1608813897"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
spaln-dbgsym_2.4.1+dfsg-3_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 1032944 bytes: control archive=744 bytes.
496 bytes, 12 lines control
509 bytes, 5 lines md5sums
Package: spaln-dbgsym
Source: spaln
Version: 2.4.1+dfsg-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1145
Depends: spaln (= 2.4.1+dfsg-3)
Section: debug
Priority: optional
Description: debug symbols for spaln
Build-Ids: 7f52b460478499b968ea7b5a0e8a8f9610026ed2 a0ea6932353a9d1207f981257004db3e489c1e00 ac595aada09cb1416be42e37dc6bff5e0005c612 b54f35597cefc4ce7c98c4aa8227a24bcb4ab4dc
drwxr-xr-x root/root 0 2020-12-24 12:44 ./
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/lib/
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/lib/debug/.build-id/7f/
-rw-r--r-- root/root 54344 2020-12-24 12:44 ./usr/lib/debug/.build-id/7f/52b460478499b968ea7b5a0e8a8f9610026ed2.debug
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/lib/debug/.build-id/a0/
-rw-r--r-- root/root 838168 2020-12-24 12:44 ./usr/lib/debug/.build-id/a0/ea6932353a9d1207f981257004db3e489c1e00.debug
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/lib/debug/.build-id/ac/
-rw-r--r-- root/root 146480 2020-12-24 12:44 ./usr/lib/debug/.build-id/ac/595aada09cb1416be42e37dc6bff5e0005c612.debug
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/lib/debug/.build-id/b5/
-rw-r--r-- root/root 22548 2020-12-24 12:44 ./usr/lib/debug/.build-id/b5/4f35597cefc4ce7c98c4aa8227a24bcb4ab4dc.debug
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 91472 2020-12-24 12:44 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/share/
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-12-24 12:44 ./usr/share/doc/spaln-dbgsym -> spaln
spaln_2.4.1+dfsg-3_armhf.deb
----------------------------
new Debian package, version 2.0.
size 285952 bytes: control archive=1216 bytes.
1133 bytes, 21 lines control
667 bytes, 11 lines md5sums
Package: spaln
Version: 2.4.1+dfsg-3
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 725
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 5), zlib1g (>= 1:1.2.0.2), spaln-data
Section: science
Priority: optional
Homepage: http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln
Description: splicing-aware transcript-alignment to genomic DNA
Spaln (space-efficient spliced alignment) is a stand-alone program that
maps and aligns a set of cDNA or protein sequences onto a whole genomic
sequence in a single job. It also performs spliced or ordinary alignment
after rapid similarity search against a protein sequence database,
if a genomic segment or an amino acid sequence is given as a query.
.
spaln supports a combination of protein sequence database and a
given genomic segment and performs rapid similarity searches and
(semi-)global alignments of a set of protein sequence queries against
a protein sequence database. Spaln adopts multi-phase heuristics that
makes it possible to perform the job on a conventional personal computer.
drwxr-xr-x root/root 0 2020-12-24 12:44 ./
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/bin/
-rwxr-xr-x root/root 27648 2020-12-24 12:44 ./usr/bin/makdbs
-rwxr-xr-x root/root 27100 2020-12-24 12:44 ./usr/bin/makmdm
-rwxr-xr-x root/root 114124 2020-12-24 12:44 ./usr/bin/sortgrcd
-rwxr-xr-x root/root 508544 2020-12-24 12:44 ./usr/bin/spaln
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/share/
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/share/doc/spaln/
-rw-r--r-- root/root 1014 2020-12-24 12:44 ./usr/share/doc/spaln/README.Debian
-rw-r--r-- root/root 10107 2020-10-09 09:44 ./usr/share/doc/spaln/README.md.gz
-rw-r--r-- root/root 752 2020-12-24 12:44 ./usr/share/doc/spaln/changelog.Debian.gz
-rw-r--r-- root/root 1175 2020-12-24 12:44 ./usr/share/doc/spaln/copyright
-rw-r--r-- root/root 33173 2020-10-09 09:44 ./usr/share/doc/spaln/readme.html
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/share/man/
drwxr-xr-x root/root 0 2020-12-24 12:44 ./usr/share/man/man1/
-rw-r--r-- root/root 1705 2020-12-24 12:44 ./usr/share/man/man1/sortgrcd.1.gz
-rw-r--r-- root/root 3575 2020-12-24 12:44 ./usr/share/man/man1/spaln.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 119712
Build-Time: 134
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 202
Job: spaln_2.4.1+dfsg-3
Machine Architecture: armhf
Package: spaln
Package-Time: 376
Source-Version: 2.4.1+dfsg-3
Space: 119712
Status: successful
Version: 2.4.1+dfsg-3
--------------------------------------------------------------------------------
Finished at 2021-01-26T22:25:30Z
Build needed 00:06:16, 119712k disk space