spaln →
2.4.1+dfsg-2 →
armhf → 2020-12-14 07:22:35
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-04
+==============================================================================+
| spaln 2.4.1+dfsg-2 (armhf) Mon, 14 Dec 2020 07:08:47 +0000 |
+==============================================================================+
Package: spaln
Version: 2.4.1+dfsg-2
Source Version: 2.4.1+dfsg-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-205524a0-1b9e-478a-be5b-7d408da85d9e' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.0 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.0 MB]
Fetched 24.9 MB in 25s (1004 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'spaln' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/spaln.git
Please use:
git clone https://salsa.debian.org/med-team/spaln.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 19.7 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main spaln 2.4.1+dfsg-2 (dsc) [2037 B]
Get:2 http://172.17.0.1/private bullseye-staging/main spaln 2.4.1+dfsg-2 (tar) [19.7 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main spaln 2.4.1+dfsg-2 (diff) [4008 B]
Fetched 19.7 MB in 4s (5014 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/spaln-xiY8Vb/spaln-2.4.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/spaln-xiY8Vb' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-pKs1QB/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-pKs1QB/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-pKs1QB/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2674 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils krb5-locales libnss-nis libnss-nisplus libpam-cap netbase
sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (22.4 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12776 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any all)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev
Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev
dpkg-deb: building package 'sbuild-build-depends-spaln-dummy' in '/<<BUILDDIR>>/resolver-pKs1QB/apt_archive/sbuild-build-depends-spaln-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-spaln-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ Sources [496 B]
Get:5 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ Packages [576 B]
Fetched 2405 B in 1s (3019 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install spaln build dependencies (apt-based resolver)
-----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libnss-nis libnss-nisplus libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc
libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0
libxml2 m4 man-db po-debconf zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc dh-make gettext-doc
libasprintf-dev libgettextpo-dev groff libtool-doc gfortran
| fortran95-compiler gcj-jdk m4-doc apparmor less www-browser
libmail-box-perl
Recommended packages:
curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
xdg-user-dirs libltdl-dev libmail-sendmail-perl
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev debhelper dh-autoreconf
dh-strip-nondeterminism dwz file gettext gettext-base groff-base
intltool-debian libarchive-zip-perl libcroco3 libdebhelper-perl libelf1
libfile-stripnondeterminism-perl libglib2.0-0 libicu67 libmagic-mgc
libmagic1 libpipeline1 libsigsegv2 libsub-override-perl libtool libuchardet0
libxml2 m4 man-db po-debconf sbuild-build-depends-spaln-dummy zlib1g-dev
0 upgraded, 33 newly installed, 0 to remove and 5 not upgraded.
Need to get 18.7 MB of archives.
After this operation, 69.5 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-pKs1QB/apt_archive ./ sbuild-build-depends-spaln-dummy 0.invalid.0 [860 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-4 [801 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3 [188 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-1 [162 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20201015-2 [162 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.66.3-2 [1178 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-5 [8288 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3 [1009 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libuchardet0:armhf.
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Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libicu67:armhf (67.1-5) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libglib2.0-0:armhf (2.66.3-2) ...
No schema files found: doing nothing.
Setting up libdebhelper-perl (13.3) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up gettext-base (0.19.8.1-10) ...
Setting up file (1:5.39-3) ...
Setting up autotools-dev (20180224.1) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up autopoint (0.19.8.1-10) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libelf1:armhf (0.182-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up libfile-stripnondeterminism-perl (1.9.0-1) ...
Setting up libtool (2.4.6-14) ...
Setting up m4 (1.4.18-4) ...
Setting up libcroco3:armhf (0.6.13-1) ...
Setting up autoconf (2.69-11.1) ...
Setting up dh-strip-nondeterminism (1.9.0-1) ...
Setting up dwz (0.13+20201015-2) ...
Setting up groff-base (1.22.4-5) ...
Setting up automake (1:1.16.2-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up gettext (0.19.8.1-10) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up po-debconf (1.0.21) ...
Setting up debhelper (13.3) ...
Setting up dh-autoreconf (19) ...
Setting up sbuild-build-depends-spaln-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-5+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.4-armmp armhf (armv7l)
Toolchain package versions: binutils_2.35.1-4+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.0-19+rpi1 gcc-10_10.2.0-19+rpi1 libc6-dev_2.31-5+rpi1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1
Package versions: adduser_3.118 apt_2.1.12 aptitude_0.8.13-2 aptitude-common_0.8.13-2 autoconf_2.69-11.1 automake_1:1.16.2-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1~rc3-1 binutils_2.35.1-4+rpi1 binutils-arm-linux-gnueabihf_2.35.1-4+rpi1 binutils-common_2.35.1-4+rpi1 bsdextrautils_2.36.1-2 bsdutils_1:2.36.1-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.0-19+rpi1 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.3 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-2 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.0-19+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.0-19+rpi1 gcc-10-base_10.2.0-19+rpi1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.59 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 krb5-locales_1.18.3-4 libacl1_2.2.53-8 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libasan6_10.2.0-19+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.0-19+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1+b1 libbinutils_2.35.1-4+rpi1 libblkid1_2.36.1-2 libboost-iostreams1.71.0_1.71.0-7+b1 libbz2-1.0_1.0.8-4 libc-bin_2.31-5+rpi1 libc-dev-bin_2.31-5+rpi1 libc6_2.31-5+rpi1 libc6-dev_2.31-5+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.0-19+rpi1 libcom-err2_1.45.6-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-4+rpi1 libctf0_2.35.1-4+rpi1 libcwidget4_0.5.18-5 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255 libdebhelper-perl_13.3 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-2 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.9.0-1 libgcc-10-dev_10.2.0-19+rpi1 libgcc-s1_10.2.0-19+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.66.3-2 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.6.15-4 libgomp1_10.2.0-19+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed6_3.6-2 libicu67_67.1-5 libidn2-0_2.3.0-4 libisl23_0.23-1 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-2 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 libldap-common_2.4.56+dfsg-1+rpi1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncursesw6_6.2+20201114-1 libnettle8_3.6-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.35-2 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libreadline8_8.1~rc3-1 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigc++-2.0-0v5_2.10.4-2 libsigsegv2_2.12-2 libsmartcols1_2.36.1-2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1 libssl1.1_1.1.1h-1 libstdc++-10-dev_10.2.0-19+rpi1 libstdc++6_10.2.0-19+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-4+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-1 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-14 libubsan1_10.2.0-19+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-4+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-2 libxapian30_1.4.17-1 libxml2_2.9.10+dfsg-6.3 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36.1-2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 netbase_6.2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-5 pinentry-curses_1.1.0-4 po-debconf_1.0.21 raspbian-archive-keyring_20120528.2 readline-common_8.1~rc3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-spaln-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2020d-1 util-linux_2.36.1-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.aF1rfMGh/trustedkeys.kbx': General error
gpgv: Signature made Wed Dec 9 10:50:39 2020 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./spaln_2.4.1+dfsg-2.dsc
dpkg-source: info: extracting spaln in /<<BUILDDIR>>/spaln-2.4.1+dfsg
dpkg-source: info: unpacking spaln_2.4.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking spaln_2.4.1+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying hardening.patch
dpkg-source: info: applying portability.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-205524a0-1b9e-478a-be5b-7d408da85d9e
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package spaln
dpkg-buildpackage: info: source version 2.4.1+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg'
[ -r src/Makefile ] && make -C src clean || true
rm -f src/dbs.h src/iolib.h src/*.o src/*.a src/Makefile
make[1]: Leaving directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg'
dh_clean
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/spaln.substvars debian/spaln-data.substvars debian/files
rm -fr -- debian/spaln/ debian/tmp/ debian/spaln-data/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch
dh_update_autotools_config -a
dh_autoreconf -a
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg'
cd src && ./configure --exec_prefix=/usr/bin
Checking for 64 bits compiler...
use CXX=g++ CFLAGS=-O3
1 -O3
binaries install to /usr/bin
tables install to /usr/share/spaln/table
alndbs install to /usr/share/spaln/seqdb
wrote Makefile
wrote files
OK. try make and make install. good luck!
make[1]: Leaving directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg'
/usr/bin/make table_dir=/usr/share/spaln/table alndbs_dir=/usr/share/spaln/seqdb exec_prefix=/usr/bin -C src
make[2]: Entering directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg/src'
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c spaln.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from spaln.cc:25:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from spaln.cc:25:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c blksrc.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from blksrc.cc:22:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from blksrc.cc:22:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
blksrc.cc: In function 'void idx2SeqLenStat(const char*, SeqLenStat&)':
blksrc.cc:1003:19: warning: comparison of integer expressions of different signedness: 'INT' {aka 'unsigned int'} and 'long int' [-Wsign-compare]
1003 | if (sls.maxv < widx->seqlen) sls.maxv = widx->seqlen;
| ~~~~~~~~~^~~~~~~~~~~~~~
blksrc.cc: In member function 'int SrchBlk::FindHsp(BPAIR*)':
blksrc.cc:2528:24: warning: comparison of integer expressions of different signedness: 'int' and 'INT' {aka 'unsigned int'} [-Wsign-compare]
2528 | if (curgr - gener >= OutPrm.MaxOut - 1) {
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
blksrc.cc: In member function 'int SrchBlk::TestOutput(int)':
blksrc.cc:2733:13: warning: format '%ld' expects argument of type 'long int', but argument 11 has type 'int' [-Wformat=]
2733 | printf(ofmt, query->sqname(), dir[d / 2], query->left, query->right, cid, p, q,
| ^~~~
......
2736 | bh4->as[d][bh4->maxs[d]] - query->at(0),
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
| |
| int
blksrc.cc:2733:13: warning: format '%ld' expects argument of type 'long int', but argument 12 has type 'int' [-Wformat=]
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c aln2.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from aln2.cc:23:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from aln2.cc:23:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c dbs.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from dbs.cc:22:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from dbs.cc:22:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
dbs.cc: In member function 'Seq* Seq::getdbseq(DbsDt*, const char*, int, bool)':
dbs.cc:821:9: warning: comparison of integer expressions of different signedness: 'INT' {aka 'unsigned int'} and 'long int' [-Wsign-compare]
821 | if (n > record->seqlen) n = record->seqlen;
| ~~^~~~~~~~~~~~~~~~
dbs.cc:826:9: warning: comparison of integer expressions of different signedness: 'INT' {aka 'unsigned int'} and 'long int' [-Wsign-compare]
826 | if (n == record->seqlen) break;
| ~~^~~~~~~~~~~~~~~~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gaps.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from gaps.cc:22:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from gaps.cc:22:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c codepot.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from codepot.cc:26:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from codepot.cc:26:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c divseq.cc
In file included from stdtype.h:34,
from cmn.h:25,
from divseq.cc:22:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from divseq.h:26,
from divseq.cc:23:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c gsinfo.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from gsinfo.cc:23:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from gsinfo.cc:23:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2b1.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from fwd2b1.cc:28:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from fwd2b1.cc:28:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2d1.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from fwd2d1.cc:29:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from fwd2d1.cc:29:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2h1.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from fwd2h1.cc:29:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from fwd2h1.cc:29:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c fwd2s1.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from fwd2s1.cc:26:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from fwd2s1.cc:26:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c bitpat.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from bitpat.cc:23:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from bitpat.cc:23:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c seq.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from seq.cc:23:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from seq.cc:23:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
seq.cc: In member function 'Seq* Seq::aliaseq(Seq*, bool)':
seq.cc:408:32: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of type 'class Seq' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess]
408 | memcpy(dest, this, sizeof(Seq));
| ^
In file included from seq.cc:23:
seq.h:252:7: note: 'class Seq' declared here
252 | class Seq {
| ^~~
seq.cc: In member function 'void Seq::seqalloc(int, int, bool)':
seq.cc:477:26: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=]
477 | } catch (std::bad_alloc ba) {
| ^~
seq.cc: In member function 'CHAR* Seq::seq_realloc()':
seq.cc:499:26: warning: catching polymorphic type 'class std::bad_alloc' by value [-Wcatch-value=]
499 | } catch (std::bad_alloc ba) {
| ^~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c simmtx.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from simmtx.cc:25:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from simmtx.cc:25:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sqpr.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from divseq.h:26,
from sqpr.cc:22:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from divseq.h:26,
from sqpr.cc:22:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c utilseq.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from utilseq.cc:22:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from utilseq.cc:22:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c vmf.cc
In file included from stdtype.h:34,
from cmn.h:25,
from vmf.cc:22:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c wln.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from wln.cc:22:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from wln.cc:22:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c boyer_moore.cc
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from boyer_moore.h:4,
from boyer_moore.cc:22:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from boyer_moore.h:4,
from boyer_moore.cc:22:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
ar rc sblib.a aln2.o dbs.o gaps.o codepot.o divseq.o gsinfo.o \
fwd2b1.o fwd2d1.o fwd2h1.o fwd2s1.o bitpat.o \
seq.o simmtx.o sqpr.o utilseq.o vmf.o wln.o boyer_moore.o
ranlib sblib.a
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c clib.cc
In file included from clib.cc:34:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c iolib.cc
In file included from iolib.cc:33:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c mfile.cc
In file included from stdtype.h:34,
from mfile.cc:22:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c sets.cc
In file included from stdtype.h:34,
from sets.cc:22:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -c supprime.cc
In file included from stdtype.h:34,
from supprime.cc:13:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
ar rc clib.a clib.o iolib.o mfile.o sets.o supprime.o
ranlib clib.a
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o spaln spaln.o blksrc.o sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o sortgrcd sortgrcd.cc sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from aln.h:26,
from sortgrcd.h:26,
from sortgrcd.cc:26:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from aln.h:26,
from sortgrcd.h:26,
from sortgrcd.cc:26:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
sortgrcd.cc: In function 'int count_record(const char*, const char*, size_t)':
sortgrcd.cc:994:11: warning: ISO C++ forbids variable length array 'buf' [-Wvla]
994 | char buf[rcdsize];
| ^~~
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makmdm makmdm.cc clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from makmdm.cc:28:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from makmdm.cc:28:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
makmdm.cc: In function 'void exp_qdt(double (*)[20], double*, double, int)':
makmdm.cc:396:15: warning: unused variable 'q' [-Wunused-variable]
396 | static double q[2][20][20] = {
| ^
makmdm.cc: At global scope:
makmdm.cc:396:15: warning: 'q' defined but not used [-Wunused-variable]
g++ -g -O2 -fdebug-prefix-map=/<<BUILDDIR>>/spaln-2.4.1+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -flto -O3 -Wall -DM_THREAD=1 -DUSE_ZLIB=1 -o makdbs makdbs.cc sblib.a clib.a -lpthread -lm -lz -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -flto
In file included from stdtype.h:34,
from cmn.h:25,
from seq.h:25,
from makdbs.h:25,
from makdbs.cc:24:
clib.h:1076:51: warning: extra ';' [-Wpedantic]
1076 | inline double inverse(double x) {return (1. / x);};
| ^
In file included from seq.h:62,
from makdbs.h:25,
from makdbs.cc:24:
codepot.h:171:2: warning: extra ';' [-Wpedantic]
171 | };
| ^
make[2]: Leaving directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg'
create-stamp debian/debhelper-build-stamp
dh_prep -a
rm -f -- debian/spaln.substvars
rm -fr -- debian/.debhelper/generated/spaln/ debian/spaln/ debian/tmp/
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg'
/usr/bin/make table_dir=/<<BUILDDIR>>/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/table alndbs_dir=/<<BUILDDIR>>/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/seqdb exec_prefix=/<<BUILDDIR>>/spaln-2.4.1+dfsg/debian/spaln//usr/bin -C src install
make[2]: Entering directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg/src'
test -d /<<BUILDDIR>>/spaln-2.4.1+dfsg/debian/spaln//usr/bin || mkdir -p /<<BUILDDIR>>/spaln-2.4.1+dfsg/debian/spaln//usr/bin
cp spaln sortgrcd makmdm makdbs /<<BUILDDIR>>/spaln-2.4.1+dfsg/debian/spaln//usr/bin
test -d /<<BUILDDIR>>/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/table || mkdir -p /<<BUILDDIR>>/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/table
./makmdm /<<BUILDDIR>>/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/table
7.6862 5.1057 4.2546 5.1269 2.0279 4.1061 6.1820 7.4714 2.2983 5.2569
9.1111 5.9498 2.3414 4.0530 5.0532 6.8225 5.8518 1.4336 3.2303 6.6374
Pam = 0 Norl fact = 106.899 trace = 106.899
Pam = 10 Norl fact = 13.996 trace = 41.995
Pam = 20 Norl fact = 15.588 trace = 45.299
Pam = 30 Norl fact = 16.894 trace = 47.531
Pam = 40 Norl fact = 18.094 trace = 49.266
Pam = 50 Norl fact = 19.249 trace = 50.701
Pam = 60 Norl fact = 20.386 trace = 51.928
Pam = 70 Norl fact = 21.522 trace = 52.997
Pam = 80 Norl fact = 22.667 trace = 53.943
Pam = 90 Norl fact = 23.828 trace = 54.788
Pam = 100 Norl fact = 25.012 trace = 55.547
Pam = 110 Norl fact = 26.222 trace = 56.234
Pam = 120 Norl fact = 27.462 trace = 56.858
Pam = 130 Norl fact = 28.735 trace = 57.427
Pam = 140 Norl fact = 30.044 trace = 57.946
Pam = 150 Norl fact = 31.391 trace = 58.421
Pam = 160 Norl fact = 32.778 trace = 58.858
Pam = 170 Norl fact = 34.208 trace = 59.259
Pam = 180 Norl fact = 35.683 trace = 59.629
Pam = 190 Norl fact = 37.204 trace = 59.970
Pam = 200 Norl fact = 38.774 trace = 60.286
Pam = 210 Norl fact = 40.394 trace = 60.580
Pam = 220 Norl fact = 42.066 trace = 60.854
Pam = 230 Norl fact = 43.793 trace = 61.110
Pam = 240 Norl fact = 45.577 trace = 61.350
Pam = 250 Norl fact = 47.419 trace = 61.576
Pam = 260 Norl fact = 49.322 trace = 61.791
Pam = 270 Norl fact = 51.287 trace = 61.996
Pam = 280 Norl fact = 53.318 trace = 62.191
Pam = 290 Norl fact = 55.415 trace = 62.380
Pam = 300 Norl fact = 57.582 trace = 62.563
test -d /<<BUILDDIR>>/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/seqdb || mkdir -p /<<BUILDDIR>>/spaln-2.4.1+dfsg/debian/spaln-data//usr/share/spaln/seqdb
make[2]: Leaving directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/spaln-2.4.1+dfsg'
dh_install -a
install -d debian/.debhelper/generated/spaln
install -d debian/.debhelper/generated/spaln-data
dh_installdocs -a
install -d debian/spaln/usr/share/doc/spaln
cp --reflink=auto -a ./debian/README.Debian debian/spaln/usr/share/doc/spaln
cp --reflink=auto -a ./doc/readme.html debian/spaln/usr/share/doc/spaln
cp --reflink=auto -a ./README.md debian/spaln/usr/share/doc/spaln
chmod -R u\+rw,go=rX debian/spaln/usr/share/doc
install -p -m0644 debian/README.Debian debian/spaln/usr/share/doc/spaln/README.Debian
install -p -m0644 debian/copyright debian/spaln/usr/share/doc/spaln/copyright
dh_installchangelogs -a
install -p -m0644 debian/changelog debian/spaln/usr/share/doc/spaln/changelog.Debian
dh_installman -a
install -d debian/spaln/usr/share/man/man1/
install -p -m0644 ./sortgrcd.1 debian/spaln/usr/share/man/man1/sortgrcd.1
install -p -m0644 ./spaln.1 debian/spaln/usr/share/man/man1/spaln.1
man-recode --to-code UTF-8 --suffix .dh-new debian/spaln/usr/share/man/man1/sortgrcd.1
man-recode --to-code UTF-8 --suffix .dh-new debian/spaln/usr/share/man/man1/spaln.1
mv debian/spaln/usr/share/man/man1/sortgrcd.1.dh-new debian/spaln/usr/share/man/man1/sortgrcd.1
chmod 0644 -- debian/spaln/usr/share/man/man1/sortgrcd.1
mv debian/spaln/usr/share/man/man1/spaln.1.dh-new debian/spaln/usr/share/man/man1/spaln.1
chmod 0644 -- debian/spaln/usr/share/man/man1/spaln.1
dh_perl -a
dh_link -a
dh_strip_nondeterminism -a
dh_compress -a
cd debian/spaln
chmod a-x usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1
gzip -9nf usr/share/doc/spaln/README.md usr/share/doc/spaln/changelog.Debian usr/share/man/man1/sortgrcd.1 usr/share/man/man1/spaln.1
cd '/<<BUILDDIR>>/spaln-2.4.1+dfsg'
dh_fixperms -a
find debian/spaln ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/spaln/usr/share/doc -type f -a -true -a ! -regex 'debian/spaln/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/spaln/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/spaln/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/spaln -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/spaln/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
dh_missing -a
dh_dwz -a -a
install -d debian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf
dwz -mdebian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug -M/usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug -- debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/spaln
objcopy --compress-debug-sections debian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug
dh_strip -a -a
install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a4
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makdbs debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a4/13ea28be7c5ecec6c6f36ad5389a08ec557eb2.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a4/13ea28be7c5ecec6c6f36ad5389a08ec557eb2.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makdbs
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/a4/13ea28be7c5ecec6c6f36ad5389a08ec557eb2.debug debian/spaln/usr/bin/makdbs
install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/77
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/makmdm debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/77/d0aac4e2ba54ac458cfb42ec1491ebba4d6fdf.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/77/d0aac4e2ba54ac458cfb42ec1491ebba4d6fdf.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/makmdm
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/77/d0aac4e2ba54ac458cfb42ec1491ebba4d6fdf.debug debian/spaln/usr/bin/makmdm
install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/47
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/sortgrcd debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/47/971f7c445f365d44b3e205fdab98ae6885a6d1.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/47/971f7c445f365d44b3e205fdab98ae6885a6d1.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/sortgrcd
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/47/971f7c445f365d44b3e205fdab98ae6885a6d1.debug debian/spaln/usr/bin/sortgrcd
install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/eb
objcopy --only-keep-debug --compress-debug-sections debian/spaln/usr/bin/spaln debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/eb/d1699ed5e49b2cfa198ecd3b155d3d9e8ce121.debug
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/eb/d1699ed5e49b2cfa198ecd3b155d3d9e8ce121.debug
strip --remove-section=.comment --remove-section=.note debian/spaln/usr/bin/spaln
objcopy --add-gnu-debuglink debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.build-id/eb/d1699ed5e49b2cfa198ecd3b155d3d9e8ce121.debug debian/spaln/usr/bin/spaln
install -d debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz
cp --reflink=auto -a debian/spaln/usr/lib/debug/.dwz/arm-linux-gnueabihf debian/.debhelper/spaln/dbgsym-root/usr/lib/debug/.dwz
rm -fr debian/spaln/usr/lib/debug/.dwz
rmdir -p --ignore-fail-on-non-empty debian/spaln/usr/lib/debug
install -d debian/.debhelper/spaln/dbgsym-root/usr/share/doc
ln -s spaln debian/.debhelper/spaln/dbgsym-root/usr/share/doc/spaln-dbgsym
dh_makeshlibs -a -a
rm -f debian/spaln/DEBIAN/shlibs
dh_shlibdeps -a -a
install -d debian/spaln/DEBIAN
dpkg-shlibdeps -Tdebian/spaln.substvars debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/makmdm debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/spaln
dpkg-shlibdeps: warning: debian/spaln/usr/bin/sortgrcd contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/spaln/usr/bin/makdbs contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/spaln/usr/bin/spaln contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: debian/spaln/usr/bin/makmdm contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/spaln/usr/bin/sortgrcd debian/spaln/usr/bin/makdbs debian/spaln/usr/bin/spaln debian/spaln/usr/bin/makmdm were not linked against ld-linux-armhf.so.3 (they use none of the library's symbols)
dh_installdeb -a
dh_gencontrol -a
echo misc:Depends= >> debian/spaln.substvars
echo misc:Pre-Depends= >> debian/spaln.substvars
install -d debian/.debhelper/spaln/dbgsym-root/DEBIAN
dpkg-gencontrol -pspaln -ldebian/changelog -Tdebian/spaln.substvars -Pdebian/.debhelper/spaln/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=spaln-dbgsym "-DDepends=spaln (= \${binary:Version})" "-DDescription=debug symbols for spaln" "-DBuild-Ids=47971f7c445f365d44b3e205fdab98ae6885a6d1 77d0aac4e2ba54ac458cfb42ec1491ebba4d6fdf a413ea28be7c5ecec6c6f36ad5389a08ec557eb2 ebd1699ed5e49b2cfa198ecd3b155d3d9e8ce121" -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pspaln -ldebian/changelog -Tdebian/spaln.substvars -Pdebian/spaln
chmod 0644 -- debian/spaln/DEBIAN/control
dh_md5sums -a
cd debian/spaln >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/spaln/DEBIAN/md5sums
cd debian/.debhelper/spaln/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/spaln/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a
dpkg-deb --root-owner-group --build debian/spaln ..
dpkg-deb --root-owner-group --build debian/.debhelper/spaln/dbgsym-root ..
dpkg-deb: building package 'spaln' in '../spaln_2.4.1+dfsg-2_armhf.deb'.
dpkg-deb: building package 'spaln-dbgsym' in '../spaln-dbgsym_2.4.1+dfsg-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../spaln_2.4.1+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-12-14T07:22:19Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
spaln_2.4.1+dfsg-2_armhf.changes:
---------------------------------
Format: 1.8
Date: Wed, 09 Dec 2020 11:37:48 +0100
Source: spaln
Binary: spaln spaln-dbgsym
Architecture: armhf
Version: 2.4.1+dfsg-2
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
spaln - splicing-aware transcript-alignment to genomic DNA
Closes: 976908
Changes:
spaln (2.4.1+dfsg-2) unstable; urgency=medium
.
* Team upload.
* Fix portability issue
Closes: #976908
Checksums-Sha1:
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e72c5325f4af11146372e3bb8d6de4a9bc4a85a9 4990 spaln_2.4.1+dfsg-2_armhf.buildinfo
d0d6cc1bf26ec57b0674bfe623cc2a9319c3f927 285872 spaln_2.4.1+dfsg-2_armhf.deb
Checksums-Sha256:
396de9bef83ee485d0223a1f803addd64655f76a7f1523af02d662578f04b2e5 1033232 spaln-dbgsym_2.4.1+dfsg-2_armhf.deb
b0873041f1724ec0f83ade306fb06916f70b9e0dd24e94f4f2b5b16c5a3239c5 4990 spaln_2.4.1+dfsg-2_armhf.buildinfo
f496243dfb7fdfed8f787e0060de029f10ad293310ddc92fe2d83534e7954c5b 285872 spaln_2.4.1+dfsg-2_armhf.deb
Files:
3eba854e41f54cdab142b864f5836ce9 1033232 debug optional spaln-dbgsym_2.4.1+dfsg-2_armhf.deb
fc5118e713a1bc60ec8352352cd91a75 4990 science optional spaln_2.4.1+dfsg-2_armhf.buildinfo
58db981a52e9f6e931195362e65d1c11 285872 science optional spaln_2.4.1+dfsg-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
spaln-dbgsym_2.4.1+dfsg-2_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 1033232 bytes: control archive=744 bytes.
496 bytes, 12 lines control
509 bytes, 5 lines md5sums
Package: spaln-dbgsym
Source: spaln
Version: 2.4.1+dfsg-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 1145
Depends: spaln (= 2.4.1+dfsg-2)
Section: debug
Priority: optional
Description: debug symbols for spaln
Build-Ids: 47971f7c445f365d44b3e205fdab98ae6885a6d1 77d0aac4e2ba54ac458cfb42ec1491ebba4d6fdf a413ea28be7c5ecec6c6f36ad5389a08ec557eb2 ebd1699ed5e49b2cfa198ecd3b155d3d9e8ce121
drwxr-xr-x root/root 0 2020-12-09 10:37 ./
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/lib/
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/lib/debug/
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/lib/debug/.build-id/47/
-rw-r--r-- root/root 146492 2020-12-09 10:37 ./usr/lib/debug/.build-id/47/971f7c445f365d44b3e205fdab98ae6885a6d1.debug
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/lib/debug/.build-id/77/
-rw-r--r-- root/root 22536 2020-12-09 10:37 ./usr/lib/debug/.build-id/77/d0aac4e2ba54ac458cfb42ec1491ebba4d6fdf.debug
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/lib/debug/.build-id/a4/
-rw-r--r-- root/root 54364 2020-12-09 10:37 ./usr/lib/debug/.build-id/a4/13ea28be7c5ecec6c6f36ad5389a08ec557eb2.debug
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/lib/debug/.build-id/eb/
-rw-r--r-- root/root 837920 2020-12-09 10:37 ./usr/lib/debug/.build-id/eb/d1699ed5e49b2cfa198ecd3b155d3d9e8ce121.debug
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/lib/debug/.dwz/
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/
-rw-r--r-- root/root 91468 2020-12-09 10:37 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/spaln.debug
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/share/
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/share/doc/
lrwxrwxrwx root/root 0 2020-12-09 10:37 ./usr/share/doc/spaln-dbgsym -> spaln
spaln_2.4.1+dfsg-2_armhf.deb
----------------------------
new Debian package, version 2.0.
size 285872 bytes: control archive=1220 bytes.
1133 bytes, 21 lines control
667 bytes, 11 lines md5sums
Package: spaln
Version: 2.4.1+dfsg-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 725
Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 5), zlib1g (>= 1:1.2.0.2), spaln-data
Section: science
Priority: optional
Homepage: http://www.genome.ist.i.kyoto-u.ac.jp/~aln_user/spaln
Description: splicing-aware transcript-alignment to genomic DNA
Spaln (space-efficient spliced alignment) is a stand-alone program that
maps and aligns a set of cDNA or protein sequences onto a whole genomic
sequence in a single job. It also performs spliced or ordinary alignment
after rapid similarity search against a protein sequence database,
if a genomic segment or an amino acid sequence is given as a query.
.
spaln supports a combination of protein sequence database and a
given genomic segment and performs rapid similarity searches and
(semi-)global alignments of a set of protein sequence queries against
a protein sequence database. Spaln adopts multi-phase heuristics that
makes it possible to perform the job on a conventional personal computer.
drwxr-xr-x root/root 0 2020-12-09 10:37 ./
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/bin/
-rwxr-xr-x root/root 27648 2020-12-09 10:37 ./usr/bin/makdbs
-rwxr-xr-x root/root 27100 2020-12-09 10:37 ./usr/bin/makmdm
-rwxr-xr-x root/root 114124 2020-12-09 10:37 ./usr/bin/sortgrcd
-rwxr-xr-x root/root 508544 2020-12-09 10:37 ./usr/bin/spaln
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/share/
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/share/doc/
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/share/doc/spaln/
-rw-r--r-- root/root 1014 2020-12-09 10:37 ./usr/share/doc/spaln/README.Debian
-rw-r--r-- root/root 10107 2020-10-09 09:44 ./usr/share/doc/spaln/README.md.gz
-rw-r--r-- root/root 676 2020-12-09 10:37 ./usr/share/doc/spaln/changelog.Debian.gz
-rw-r--r-- root/root 1175 2020-12-09 10:37 ./usr/share/doc/spaln/copyright
-rw-r--r-- root/root 33173 2020-10-09 09:44 ./usr/share/doc/spaln/readme.html
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/share/man/
drwxr-xr-x root/root 0 2020-12-09 10:37 ./usr/share/man/man1/
-rw-r--r-- root/root 1705 2020-12-09 10:37 ./usr/share/man/man1/sortgrcd.1.gz
-rw-r--r-- root/root 3575 2020-12-09 10:37 ./usr/share/man/man1/spaln.1.gz
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 119712
Build-Time: 454
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 298
Job: spaln_2.4.1+dfsg-2
Machine Architecture: armhf
Package: spaln
Package-Time: 812
Source-Version: 2.4.1+dfsg-2
Space: 119712
Status: successful
Version: 2.4.1+dfsg-2
--------------------------------------------------------------------------------
Finished at 2020-12-14T07:22:19Z
Build needed 00:13:32, 119712k disc space