spades →
3.13.1+dfsg-2 →
armhf → 2021-01-27 00:51:58
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| spades 3.13.1+dfsg-2 (armhf) Wed, 27 Jan 2021 00:42:44 +0000 |
+==============================================================================+
Package: spades
Version: 3.13.1+dfsg-2
Source Version: 3.13.1+dfsg-2
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-021f1100-4b53-42ed-9c4d-3aa7bdfa6be2' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.1 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.1 MB]
Fetched 25.2 MB in 9s (2835 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'spades' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/spades.git
Please use:
git clone https://salsa.debian.org/med-team/spades.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3230 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main spades 3.13.1+dfsg-2 (dsc) [2381 B]
Get:2 http://172.17.0.1/private bullseye-staging/main spades 3.13.1+dfsg-2 (tar) [3203 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main spades 3.13.1+dfsg-2 (diff) [25.2 kB]
Fetched 3230 kB in 1s (5781 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/spades-FMcUyi/spades-3.13.1+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/spades-FMcUyi' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-G7t6to/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-G7t6to/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-G7t6to/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ Packages [432 B]
Fetched 2108 B in 0s (9557 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
bsdextrautils krb5-locales libnss-nis libnss-nisplus libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 83 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (64.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12543 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-python, cmake, python3-dev, zlib1g-dev, libbz2-dev, libboost-dev, libbam-dev, libbamtools-dev, libhat-trie-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, python3-yaml, python3-joblib, asciidoctor (>= 1.5.3), bwa, libbwa-dev, lynx
Filtered Build-Depends: debhelper-compat (= 12), dh-python, cmake, python3-dev, zlib1g-dev, libbz2-dev, libboost-dev, libbam-dev, libbamtools-dev, libhat-trie-dev, libhts-dev, libnlopt-dev, libnlopt-cxx-dev, libssw-dev, python3-yaml, python3-joblib, asciidoctor (>= 1.5.3), bwa, libbwa-dev, lynx
dpkg-deb: building package 'sbuild-build-depends-spades-dummy' in '/<<BUILDDIR>>/resolver-G7t6to/apt_archive/sbuild-build-depends-spades-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-spades-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ Sources [601 B]
Get:5 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ Packages [681 B]
Fetched 2615 B in 0s (11.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install spades build dependencies (apt-based resolver)
------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libnss-nis libnss-nisplus libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bwa ca-certificates
cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism
dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl
libarchive13 libbam-dev libbamtools-dev libbamtools2.5.1 libboost-dev
libboost1.74-dev libbrotli1 libbsd0 libbwa-dev libbz2-dev libcurl3-gnutls
libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0
libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl libgnutls30
libhat-trie-dev libhat-trie0 libhts-dev libhts3 libicu67 libidn11
libjsoncpp24 liblzma-dev liblzma5 libmagic-mgc libmagic1 libncurses6
libncursesw6 libnghttp2-14 libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev
libnlopt0 libpipeline1 libprocps8 libpsl5 libpython3-dev libpython3-stdlib
libpython3.9 libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib
librhash0 librtmp1 libruby2.7 libsigsegv2 libssh2-1 libssw-dev libssw0
libsub-override-perl libtinfo6 libtool libuchardet0 libuv1 libxml2
libyaml-0-2 lynx lynx-common m4 mailcap man-db media-types mime-support
openssl po-debconf procps python3 python3-dev python3-distutils
python3-joblib python3-lib2to3 python3-minimal python3-pkg-resources
python3-yaml python3.9 python3.9-dev python3.9-minimal rake ruby
ruby-asciidoctor ruby-minitest ruby-net-telnet ruby-power-assert
ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc samtools cmake-doc ninja-build
dh-make gettext-doc libasprintf-dev libgettextpo-dev groff lrzip
libbamtools-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
libcurl4-doc libgnutls28-dev libidn11-dev libkrb5-dev libldap2-dev
librtmp-dev libssh2-1-dev pkg-config gnutls-bin liblzma-doc libtool-doc
gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less libmail-box-perl
python3-doc python3-tk python3-venv python3-setuptools python3.9-venv
python3.9-doc binfmt-support ri ruby-dev bundler
Recommended packages:
bzip2-doc libarchive-cpio-perl libgpm2 publicsuffix libltdl-dev
libmail-sendmail-perl psmisc python3-numpy python3-pytest python3-simplejson
python3-psutil zip fonts-lato libjs-jquery
The following NEW packages will be installed:
asciidoctor autoconf automake autopoint autotools-dev bwa ca-certificates
cmake cmake-data debhelper dh-autoreconf dh-python dh-strip-nondeterminism
dwz file gettext gettext-base groff-base intltool-debian libarchive-zip-perl
libarchive13 libbam-dev libbamtools-dev libbamtools2.5.1 libboost-dev
libboost1.74-dev libbrotli1 libbsd0 libbwa-dev libbz2-dev libcurl3-gnutls
libcurl4 libcurl4-gnutls-dev libdebhelper-perl libdeflate-dev libdeflate0
libelf1 libexpat1 libexpat1-dev libfile-stripnondeterminism-perl
libhat-trie-dev libhat-trie0 libhts-dev libhts3 libicu67 libidn11
libjsoncpp24 liblzma-dev libmagic-mgc libmagic1 libncurses6 libnghttp2-14
libnlopt-cxx-dev libnlopt-cxx0 libnlopt-dev libnlopt0 libpipeline1
libprocps8 libpsl5 libpython3-dev libpython3-stdlib libpython3.9
libpython3.9-dev libpython3.9-minimal libpython3.9-stdlib librhash0 librtmp1
libruby2.7 libsigsegv2 libssh2-1 libssw-dev libssw0 libsub-override-perl
libtool libuchardet0 libuv1 libxml2 libyaml-0-2 lynx lynx-common m4 mailcap
man-db media-types mime-support openssl po-debconf procps python3
python3-dev python3-distutils python3-joblib python3-lib2to3 python3-minimal
python3-pkg-resources python3-yaml python3.9 python3.9-dev python3.9-minimal
rake ruby ruby-asciidoctor ruby-minitest ruby-net-telnet ruby-power-assert
ruby-rubygems ruby-test-unit ruby-xmlrpc ruby2.7 rubygems-integration
sbuild-build-depends-spades-dummy zlib1g-dev
The following packages will be upgraded:
libgnutls30 liblzma5 libncursesw6 libtinfo6
4 upgraded, 112 newly installed, 0 to remove and 79 not upgraded.
Need to get 61.0 MB of archives.
After this operation, 321 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-G7t6to/apt_archive ./ sbuild-build-depends-spades-dummy 0.invalid.0 [964 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.3-2 [1269 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-minimal armhf 3.9.1-2+rpi1 [790 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-1 [73.3 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf python3.9-minimal armhf 3.9.1-2+rpi1 [1623 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf python3-minimal armhf 3.9.1-1 [37.8 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf media-types all 4.0.0 [30.3 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf mailcap all 3.68 [31.6 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf mime-support all 3.66 [10.9 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf liblzma5 armhf 5.2.5-1.0 [158 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libtinfo6 armhf 6.2+20201114-2 [328 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libncursesw6 armhf 6.2+20201114-2 [105 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-stdlib armhf 3.9.1-2+rpi1 [1658 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf python3.9 armhf 3.9.1-2+rpi1 [464 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libpython3-stdlib armhf 3.9.1-1 [21.0 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf python3 armhf 3.9.1-1 [64.1 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libgnutls30 armhf 3.7.0-5 [1275 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20201114-2 [79.9 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.16-5 [59.8 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.16-5 [238 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-3 [170 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1i-2 [813 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf rubygems-integration all 1.18 [6704 B]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf rake all 13.0.1-4 [84.7 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf ruby-minitest all 5.13.0-1 [57.3 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf ruby-net-telnet all 0.1.1-2 [12.5 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf ruby-power-assert all 1.1.7-1 [11.4 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf ruby-test-unit all 3.3.9-1 [86.1 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf ruby-xmlrpc all 0.3.0-2 [23.7 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libyaml-0-2 armhf 0.2.2-1 [40.0 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libruby2.7 armhf 2.7.2-3 [3837 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf ruby2.7 armhf 2.7.2-3 [683 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf ruby-rubygems all 3.2.5-2 [281 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf ruby armhf 1:2.7+2 [11.7 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf ruby-asciidoctor all 2.0.12-2 [206 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf asciidoctor all 2.0.12-2 [83.9 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-3 [32.4 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-3 [509 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf bwa armhf 0.7.17-5+b4 [194 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.18.4-1+rpi1 [1725 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-6 [8289 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.42.0-1 [66.7 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.1 [54.2 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.9.0-2 [141 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.74.0-1 [305 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp24 armhf 1.9.4-4 [67.0 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.4.1-1 [140 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.40.0-1 [118 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.18.4-1+rpi1+b1 [3111 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.1 [188 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.10.0-1 [25.6 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.10.0-1 [15.3 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.182-3 [162 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20210118-1 [163 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-3 [1214 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.1 [1010 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf python3-lib2to3 all 3.9.1-2 [77.2 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf python3-distutils all 3.9.1-2 [143 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf dh-python all 4.20201102 [99.3 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libbam-dev armhf 0.1.19+dfsg-1 [106 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libbamtools2.5.1 armhf 2.5.1+dfsg-7+b1 [135 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libbamtools-dev armhf 2.5.1+dfsg-7+b1 [179 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libboost1.74-dev armhf 1.74.0-8 [9534 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.74.0.3+b1 [4820 B]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libbwa-dev armhf 0.7.17-5+b4 [133 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-4 [28.0 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libcurl3-gnutls armhf 7.74.0-1 [301 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libcurl4-gnutls-dev armhf 7.74.0-1 [375 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libdeflate0 armhf 1.7-1 [44.0 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libdeflate-dev armhf 1.7-1 [40.3 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libexpat1-dev armhf 2.2.10-1 [121 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libhat-trie0 armhf 0.1.2-2 [10.6 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libhat-trie-dev armhf 0.1.2-2 [19.0 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libhts3 armhf 1.11-4 [324 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.5-1.0 [219 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libhts-dev armhf 1.11-4 [3815 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libidn11 armhf 1.33-3 [113 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libnlopt0 armhf 2.7.0-4+b1 [140 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libnlopt-dev armhf 2.7.0-4+b1 [29.8 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libnlopt-cxx0 armhf 2.7.0-4+b1 [159 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libnlopt-cxx-dev armhf 2.7.0-4+b1 [14.5 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9 armhf 3.9.1-2+rpi1 [1413 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libpython3.9-dev armhf 3.9.1-2+rpi1 [3042 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libpython3-dev armhf 3.9.1-1 [21.2 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libssw0 armhf 1.1-12 [20.9 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libssw-dev armhf 1.1-12 [23.9 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf lynx-common all 2.9.0dev.6-1 [1191 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf lynx armhf 2.9.0dev.6-1 [505 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf python3.9-dev armhf 3.9.1-2+rpi1 [501 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf python3-dev armhf 3.9.1-1 [1168 B]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf python3-pkg-resources all 51.3.3-1 [189 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf python3-joblib all 0.17.0-2 [213 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf python3-yaml armhf 5.3.1-3+b1 [126 kB]
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Unpacking sbuild-build-depends-spades-dummy (0.invalid.0) ...
Setting up media-types (4.0.0) ...
Setting up libpipeline1:armhf (1.5.3-1) ...
Setting up libpsl5:armhf (0.21.0-1.1) ...
Setting up libboost1.74-dev:armhf (1.74.0-8) ...
Setting up libicu67:armhf (67.1-6) ...
Setting up ruby-power-assert (1.1.7-1) ...
Setting up libmagic-mgc (1:5.39-3) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libyaml-0-2:armhf (0.2.2-1) ...
Setting up bwa (0.7.17-5+b4) ...
Setting up libdebhelper-perl (13.3.1) ...
Setting up libbrotli1:armhf (1.0.9-2+b1) ...
Setting up libnghttp2-14:armhf (1.42.0-1) ...
Setting up libmagic1:armhf (1:5.39-3) ...
Setting up libdeflate0:armhf (1.7-1) ...
Setting up gettext-base (0.21-3) ...
Setting up libnlopt0:armhf (2.7.0-4+b1) ...
Setting up file (1:5.39-3) ...
Setting up ruby-minitest (5.13.0-1) ...
Setting up autotools-dev (20180224.1+nmu1) ...
Setting up libuv1:armhf (1.40.0-1) ...
Setting up libhat-trie0:armhf (0.1.2-2) ...
Setting up libexpat1-dev:armhf (2.2.10-1) ...
Setting up ruby-test-unit (3.3.9-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libidn11:armhf (1.33-3) ...
Setting up libncurses6:armhf (6.2+20201114-2) ...
Setting up ruby-net-telnet (0.1.1-2) ...
Setting up libsigsegv2:armhf (2.12-3) ...
Setting up libbamtools2.5.1:armhf (2.5.1+dfsg-7+b1) ...
Setting up autopoint (0.21-3) ...
Setting up libbam-dev (0.1.19+dfsg-1) ...
Setting up lynx-common (2.9.0dev.6-1) ...
Setting up libbwa-dev (0.7.17-5+b4) ...
Setting up libnlopt-cxx0:armhf (2.7.0-4+b1) ...
Setting up libjsoncpp24:armhf (1.9.4-4) ...
Setting up liblzma-dev:armhf (5.2.5-1.0) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
Setting up libhat-trie-dev:armhf (0.1.2-2) ...
Setting up librhash0:armhf (1.4.1-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-2) ...
Setting up libssh2-1:armhf (1.9.0-2) ...
Setting up cmake-data (3.18.4-1+rpi1) ...
Setting up libboost-dev:armhf (1.74.0.3+b1) ...
Setting up libnlopt-dev:armhf (2.7.0-4+b1) ...
Setting up openssl (1.1.1i-2) ...
Setting up libbsd0:armhf (0.10.0-1) ...
Setting up libdeflate-dev:armhf (1.7-1) ...
Setting up mailcap (3.68) ...
Setting up libelf1:armhf (0.182-3) ...
Setting up libssw0:armhf (1.1-12) ...
Setting up ruby-xmlrpc (0.3.0-2) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up libprocps8:armhf (2:3.3.16-5) ...
Setting up libpython3.9-stdlib:armhf (3.9.1-2+rpi1) ...
Setting up libpython3-stdlib:armhf (3.9.1-1) ...
Setting up libbz2-dev:armhf (1.0.8-4) ...
Setting up libfile-stripnondeterminism-perl (1.10.0-1) ...
Setting up gettext (0.21-3) ...
Setting up mime-support (3.66) ...
Setting up libssw-dev:armhf (1.1-12) ...
Setting up libtool (2.4.6-15) ...
Setting up libarchive13:armhf (3.4.3-2) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.74.0-1) ...
Setting up libcurl4-gnutls-dev:armhf (7.74.0-1) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libnlopt-cxx-dev:armhf (2.7.0-4+b1) ...
Setting up libpython3.9:armhf (3.9.1-2+rpi1) ...
Setting up libbamtools-dev:armhf (2.5.1+dfsg-7+b1) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.10.0-1) ...
Setting up dwz (0.13+20210118-1) ...
Setting up groff-base (1.22.4-5) ...
Setting up procps (2:3.3.16-5) ...
update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode
Setting up libcurl4:armhf (7.74.0-1) ...
Setting up lynx (2.9.0dev.6-1) ...
update-alternatives: using /usr/bin/lynx to provide /usr/bin/www-browser (www-browser) in auto mode
Setting up python3.9 (3.9.1-2+rpi1) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libhts3:armhf (1.11-4) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libhts-dev:armhf (1.11-4) ...
Setting up libpython3.9-dev:armhf (3.9.1-2+rpi1) ...
Setting up python3 (3.9.1-1) ...
Setting up rubygems-integration (1.18) ...
Setting up man-db (2.9.3-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up python3.9-dev (3.9.1-2+rpi1) ...
Setting up cmake (3.18.4-1+rpi1+b1) ...
Setting up python3-lib2to3 (3.9.1-2) ...
Setting up python3-pkg-resources (51.3.3-1) ...
Setting up python3-distutils (3.9.1-2) ...
Setting up dh-python (4.20201102) ...
Setting up libpython3-dev:armhf (3.9.1-1) ...
Setting up python3-joblib (0.17.0-2) ...
Setting up python3-yaml (5.3.1-3+b1) ...
Setting up python3-dev (3.9.1-1) ...
Setting up dh-autoreconf (19) ...
Setting up rake (13.0.1-4) ...
Setting up debhelper (13.3.1) ...
Setting up libruby2.7:armhf (2.7.2-3) ...
Setting up ruby2.7 (2.7.2-3) ...
Setting up ruby (1:2.7+2) ...
Setting up ruby-asciidoctor (2.0.12-2) ...
Setting up asciidoctor (2.0.12-2) ...
Setting up ruby-rubygems (3.2.5-2) ...
Setting up sbuild-build-depends-spades-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-5+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-76-generic armhf (armv8l)
Toolchain package versions: binutils_2.35.1-5+rpi1 dpkg-dev_1.20.5+rpi1 g++-10_10.2.1-1+rpi1 gcc-10_10.2.1-1+rpi1 libc6-dev_2.31-5+rpi1 libstdc++-10-dev_10.2.1-1+rpi1 libstdc++6_10.2.1-1+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1
Package versions: adduser_3.118 apt_2.1.12 asciidoctor_2.0.12-2 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.48 bash_5.1-1 binutils_2.35.1-5+rpi1 binutils-arm-linux-gnueabihf_2.35.1-5+rpi1 binutils-common_2.35.1-5+rpi1 bsdextrautils_2.36.1-2 bsdutils_1:2.36.1-2 build-essential_12.8 bwa_0.7.17-5+b4 bzip2_1.0.8-4 ca-certificates_20210119 cmake_3.18.4-1+rpi1+b1 cmake-data_3.18.4-1+rpi1 coreutils_8.32-4 cpp_4:10.2.0-1+rpi1 cpp-10_10.2.1-1+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3.1 debianutils_4.11.2 dh-autoreconf_19 dh-python_4.20201102 dh-strip-nondeterminism_1.10.0-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.20.5+rpi1 dpkg-dev_1.20.5+rpi1 dwz_0.13+20210118-1 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-2 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1+rpi1 g++-10_10.2.1-1+rpi1 gcc_4:10.2.0-1+rpi1 gcc-10_10.2.1-1+rpi1 gcc-10-base_10.2.1-1+rpi1 gettext_0.21-3 gettext-base_0.21-3 gnupg_2.2.20-1 gnupg-l10n_2.2.20-1 gnupg-utils_2.2.20-1 gpg_2.2.20-1 gpg-agent_2.2.20-1 gpg-wks-client_2.2.20-1 gpg-wks-server_2.2.20-1 gpgconf_2.2.20-1 gpgsm_2.2.20-1 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 iputils-ping_3:20200821-2 krb5-locales_1.18.3-4 libacl1_2.2.53-8 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_10.2.1-1+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-1+rpi1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1+b1 libbam-dev_0.1.19+dfsg-1 libbamtools-dev_2.5.1+dfsg-7+b1 libbamtools2.5.1_2.5.1+dfsg-7+b1 libbinutils_2.35.1-5+rpi1 libblkid1_2.36.1-2 libboost-dev_1.74.0.3+b1 libboost1.74-dev_1.74.0-8 libbrotli1_1.0.9-2+b1 libbsd0_0.10.0-1 libbwa-dev_0.7.17-5+b4 libbz2-1.0_1.0.8-4 libbz2-dev_1.0.8-4 libc-bin_2.31-5+rpi1 libc-dev-bin_2.31-5+rpi1 libc6_2.31-5+rpi1 libc6-dev_2.31-5+rpi1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcap2-bin_1:2.44-1 libcc1-0_10.2.1-1+rpi1 libcom-err2_1.45.6-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-5+rpi1 libctf0_2.35.1-5+rpi1 libcurl3-gnutls_7.74.0-1 libcurl4_7.74.0-1 libcurl4-gnutls-dev_7.74.0-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.255+b1 libdebhelper-perl_13.3.1 libdeflate-dev_1.7-1 libdeflate0_1.7-1 libdpkg-perl_1.20.5+rpi1 libelf1_0.182-3 libexpat1_2.2.10-1 libexpat1-dev_2.2.10-1 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-2 libffi7_3.3-5 libfile-stripnondeterminism-perl_1.10.0-1 libgcc-10-dev_10.2.1-1+rpi1 libgcc-s1_10.2.1-1+rpi1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.0-5 libgomp1_10.2.1-1+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhat-trie-dev_0.1.2-2 libhat-trie0_0.1.2-2 libhogweed6_3.6-2 libhts-dev_1.11-4 libhts3_1.11-4 libicu67_67.1-6 libidn11_1.33-3 libidn2-0_2.3.0-4 libisl23_0.23-1 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-2 libldap-2.4-2_2.4.56+dfsg-1+rpi1+b1 libldap-common_2.4.56+dfsg-1+rpi1 liblz4-1_1.9.2-2 liblzma-dev_5.2.5-1.0 liblzma5_5.2.5-1.0 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-2 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.6-2 libnghttp2-14_1.42.0-1 libnlopt-cxx-dev_2.7.0-4+b1 libnlopt-cxx0_2.7.0-4+b1 libnlopt-dev_2.7.0-4+b1 libnlopt0_2.7.0-4+b1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libp11-kit0_0.23.21-2 libpam-cap_1:2.44-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.0-5 libpipeline1_1.5.3-1 libprocps8_2:3.3.16-5 libpsl5_0.21.0-1.1 libpython3-dev_3.9.1-1 libpython3-stdlib_3.9.1-1 libpython3.9_3.9.1-2+rpi1 libpython3.9-dev_3.9.1-2+rpi1 libpython3.9-minimal_3.9.1-2+rpi1 libpython3.9-stdlib_3.9.1-2+rpi1 libreadline8_8.1-1 librhash0_1.4.1-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libruby2.7_2.7.2-3 libsasl2-2_2.1.27+dfsg-2 libsasl2-modules-db_2.1.27+dfsg-2 libseccomp2_2.5.0-3+rpi1 libselinux1_3.1-2+b1 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.12-3 libsmartcols1_2.36.1-2 libsqlite3-0_3.34.0-1 libss2_1.45.6-1 libssh2-1_1.9.0-2 libssl1.1_1.1.1h-1 libssw-dev_1.1-12 libssw0_1.1-12 libstdc++-10-dev_10.2.1-1+rpi1 libstdc++6_10.2.1-1+rpi1 libsub-override-perl_0.09-2 libsystemd0_246.6-4+rpi1 libtasn1-6_4.16.0-2 libtinfo6_6.2+20201114-2 libtirpc-common_1.2.6-3 libtirpc-dev_1.2.6-3 libtirpc3_1.2.6-3 libtool_2.4.6-15 libubsan1_10.2.1-1+rpi1 libuchardet0_0.0.7-1 libudev1_246.6-4+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-2 libuv1_1.40.0-1 libxml2_2.9.10+dfsg-6.3 libyaml-0-2_0.2.2-1 libzstd1_1.4.5+dfsg-4+rpi1 linux-libc-dev_5.9.6-1+rpi1+b1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0+rpi1 lynx_2.9.0dev.6-1 lynx-common_2.9.0dev.6-1 m4_1.4.18-5 mailcap_3.68 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 media-types_4.0.0 mime-support_3.66 mount_2.36.1-2 ncurses-base_6.2+20201114-1 ncurses-bin_6.2+20201114-1 netbase_6.2 openssl_1.1.1i-2 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.32.0-5 perl-base_5.32.0-5 perl-modules-5.32_5.32.0-6 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 procps_2:3.3.16-5 python3_3.9.1-1 python3-dev_3.9.1-1 python3-distutils_3.9.1-2 python3-joblib_0.17.0-2 python3-lib2to3_3.9.1-2 python3-minimal_3.9.1-1 python3-pkg-resources_51.3.3-1 python3-yaml_5.3.1-3+b1 python3.9_3.9.1-2+rpi1 python3.9-dev_3.9.1-2+rpi1 python3.9-minimal_3.9.1-2+rpi1 rake_13.0.1-4 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 ruby_1:2.7+2 ruby-asciidoctor_2.0.12-2 ruby-minitest_5.13.0-1 ruby-net-telnet_0.1.1-2 ruby-power-assert_1.1.7-1 ruby-rubygems_3.2.5-2 ruby-test-unit_3.3.9-1 ruby-xmlrpc_0.3.0-2 ruby2.7_2.7.2-3 rubygems-integration_1.18 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-spades-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1+rpi1 tzdata_2020d-1 util-linux_2.36.1-2 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.teCcCVHg/trustedkeys.kbx': General error
gpgv: Signature made Fri Nov 22 09:49:38 2019 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./spades_3.13.1+dfsg-2.dsc
dpkg-source: info: extracting spades in /<<BUILDDIR>>/spades-3.13.1+dfsg
dpkg-source: info: unpacking spades_3.13.1+dfsg.orig.tar.xz
dpkg-source: info: unpacking spades_3.13.1+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 0002_use_debian_packaged_python-joblib.patch
dpkg-source: info: applying 0003_accept-system-bwa.patch
dpkg-source: info: applying 0101_cmake_ignore_removed_python-yaml.patch
dpkg-source: info: applying 0102_cmake_ignore_removed_python-joblib.patch
dpkg-source: info: applying 0103_use-debian-packaged-bwa.patch
dpkg-source: info: applying 0110_build_single_thread.patch
dpkg-source: info: applying 0114_use_debian_provided_libs.patch
dpkg-source: info: applying 0115_enable_compiler_messages.patch
dpkg-source: info: applying 0111_use_full_config_dirs.patch
dpkg-source: info: applying 0116_stable_link_order.patch
dpkg-source: info: applying 0117_build_with_debug.patch
dpkg-source: info: applying 0118_adjust_spades_home_again.patch
dpkg-source: info: applying fix-bool-cast
dpkg-source: info: applying spelling
dpkg-source: info: applying gcc7.patch
dpkg-source: info: applying python3.patch
dpkg-source: info: applying yaml_load.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-021f1100-4b53-42ed-9c4d-3aa7bdfa6be2
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package spades
dpkg-buildpackage: info: source version 3.13.1+dfsg-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --with python3 --sourcedirectory=assembler/src --buildsystem=cmake
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<BUILDDIR>>/spades-3.13.1+dfsg'
dh_auto_clean
rm -rf build_spades
rm -rf install_spades
rm -rf spades_test
find . -name "*.pyc" -delete
rm -rf /<<BUILDDIR>>/spades-3.13.1+dfsg/debian/man_src/*.html /<<BUILDDIR>>/spades-3.13.1+dfsg/debian/man_src/*.?
rm -rf /<<BUILDDIR>>/spades-3.13.1+dfsg/debian/man
make[1]: Leaving directory '/<<BUILDDIR>>/spades-3.13.1+dfsg'
dh_autoreconf_clean -O--sourcedirectory=assembler/src -O--buildsystem=cmake
debian/rules override_dh_clean
make[1]: Entering directory '/<<BUILDDIR>>/spades-3.13.1+dfsg'
dh_clean -X.orig
make[1]: Leaving directory '/<<BUILDDIR>>/spades-3.13.1+dfsg'
debian/rules build-arch
dh build-arch --with python3 --sourcedirectory=assembler/src --buildsystem=cmake
dh_update_autotools_config -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake
dh_autoreconf -a -O--sourcedirectory=assembler/src -O--buildsystem=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<BUILDDIR>>/spades-3.13.1+dfsg'
echo "Simply use spades_compile.sh in auto_build"
Simply use spades_compile.sh in auto_build
make[1]: Leaving directory '/<<BUILDDIR>>/spades-3.13.1+dfsg'
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<BUILDDIR>>/spades-3.13.1+dfsg'
cd assembler && PREFIX=/<<BUILDDIR>>/spades-3.13.1+dfsg/install_spades ./spades_compile.sh
CMake Warning (dev) in CMakeLists.txt:
No project() command is present. The top-level CMakeLists.txt file must
contain a literal, direct call to the project() command. Add a line of
code such as
project(ProjectName)
near the top of the file, but after cmake_minimum_required().
CMake is pretending there is a "project(Project)" command on the first
line.
This warning is for project developers. Use -Wno-dev to suppress it.
-- The C compiler identification is GNU 10.2.1
-- The CXX compiler identification is GNU 10.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/c++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
CMake Warning (dev) at cmake/options.cmake:56 (set):
implicitly converting 'INTEGER' to 'STRING' type.
Call Stack (most recent call first):
CMakeLists.txt:38 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
CMake Warning (dev) at cmake/options.cmake:57 (set):
implicitly converting 'INTEGER' to 'STRING' type.
Call Stack (most recent call first):
CMakeLists.txt:38 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Found OpenMP_C: -fopenmp (found version "4.5")
-- Found OpenMP_CXX: -fopenmp (found version "4.5")
-- Found OpenMP: TRUE (found version "4.5")
-- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11")
-- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.8")
-- Looking for BZ2_bzCompressInit
-- Looking for BZ2_bzCompressInit - found
CMake Warning (dev) at /usr/share/cmake-3.18/Modules/FindPackageHandleStandardArgs.cmake:273 (message):
The package name passed to `find_package_handle_standard_args` (readline)
does not match the name of the calling package (Readline). This can lead
to problems in calling code that expects `find_package` result variables
(e.g., `_FOUND`) to follow a certain pattern.
Call Stack (most recent call first):
cmake/Modules/FindReadline.cmake:32 (FIND_PACKAGE_HANDLE_STANDARD_ARGS)
cmake/deps.cmake:19 (find_package)
CMakeLists.txt:52 (include)
This warning is for project developers. Use -Wno-dev to suppress it.
-- Could NOT find readline (missing: READLINE_INCLUDE_DIR READLINE_LIBRARY)
-- Found Boost: /usr/lib/arm-linux-gnueabihf/cmake/Boost-1.74.0/BoostConfig.cmake (found version "1.74.0")
Making Release Configuration...
Building SPAdes from N/A, sha: N/A
-- Looking for include file features.h
-- Looking for include file features.h - found
-- Looking for include file sys/cdefs.h
-- Looking for include file sys/cdefs.h - found
-- Looking for atomic_fetchadd_long
-- Looking for atomic_fetchadd_long - not found
-- Looking for OSAtomicAdd64
-- Looking for OSAtomicAdd64 - not found
-- Looking for OSSpinLockLock
-- Looking for OSSpinLockLock - not found
-- Looking for _malloc_thread_cleanup
-- Looking for _malloc_thread_cleanup - not found
-- Looking for _pthread_mutex_init_calloc_cb,
-- Looking for _pthread_mutex_init_calloc_cb, - not found
-- Looking for sbrk
-- Looking for sbrk - found
-- Performing Test JEMALLOC_TLS_MODEL_SUPPORTED
-- Performing Test JEMALLOC_TLS_MODEL_SUPPORTED - Success
-- Looking for sys/types.h
-- Looking for sys/types.h - found
-- Looking for stdint.h
-- Looking for stdint.h - found
-- Looking for stddef.h
-- Looking for stddef.h - found
-- Check size of void*
-- Check size of void* - done
CMake Error at /<<BUILDDIR>>/spades-3.13.1+dfsg/assembler/ext/src/jemalloc/CMakeLists.txt:79 (message):
Unsupported pointer size
-- Configuring incomplete, errors occurred!
See also "/<<BUILDDIR>>/spades-3.13.1+dfsg/assembler/build_spades/CMakeFiles/CMakeOutput.log".
See also "/<<BUILDDIR>>/spades-3.13.1+dfsg/assembler/build_spades/CMakeFiles/CMakeError.log".
make[1]: *** [debian/rules:42: override_dh_auto_build] Error 1
make[1]: Leaving directory '/<<BUILDDIR>>/spades-3.13.1+dfsg'
make: *** [debian/rules:24: build-arch] Error 2
dpkg-buildpackage: error: debian/rules build-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2021-01-27T00:51:51Z
Finished
--------
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 22012
Build-Time: 19
Distribution: bullseye-staging
Fail-Stage: build
Host Architecture: armhf
Install-Time: 510
Job: spades_3.13.1+dfsg-2
Machine Architecture: armhf
Package: spades
Package-Time: 547
Source-Version: 3.13.1+dfsg-2
Space: 22012
Status: attempted
Version: 3.13.1+dfsg-2
--------------------------------------------------------------------------------
Finished at 2021-01-27T00:51:51Z
Build needed 00:09:07, 22012k disk space