scrappie →
1.4.2-7 →
armhf → 2021-04-24 07:49:05
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| scrappie 1.4.2-7 (armhf) Sat, 24 Apr 2021 05:01:40 +0000 |
+==============================================================================+
Package: scrappie
Version: 1.4.2-7
Source Version: 1.4.2-7
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bullseye-staging-armhf-sbuild-6ea85dc9-f73f-4678-857b-09f842405dd9' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/scrappie-PAVTRe/resolver-JMPBQg' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [12.2 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [13.2 MB]
Fetched 25.5 MB in 11s (2363 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'scrappie' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/scrappie.git
Please use:
git clone https://salsa.debian.org/med-team/scrappie.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 21.8 MB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main scrappie 1.4.2-7 (dsc) [2110 B]
Get:2 http://172.17.0.1/private bullseye-staging/main scrappie 1.4.2-7 (tar) [21.8 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main scrappie 1.4.2-7 (diff) [14.2 kB]
Fetched 21.8 MB in 10s (2140 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/scrappie-PAVTRe/scrappie-1.4.2' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/scrappie-PAVTRe' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), libcunit1-dev, libhdf5-dev, libopenblas-dev, cmake, libsimde-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), libcunit1-dev, libhdf5-dev, libopenblas-dev, cmake, libsimde-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [398 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [484 B]
Fetched 1839 B in 0s (48.3 kB/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libarchive13 libbrotli1 libcunit1 libcunit1-dev libcurl4
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp24 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libopenblas-dev libopenblas-pthread-dev
libopenblas0 libopenblas0-pthread libpipeline1 libprocps8 libpsl5 librhash0
librtmp1 libsigsegv2 libsimde-dev libssh2-1 libsub-override-perl libsz2
libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps
sensible-utils zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cmake-doc ninja-build dh-make
gettext-doc libasprintf-dev libgettextpo-dev groff lrzip libcunit1-doc
libhdf5-doc libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc
apparmor less www-browser libmail-box-perl
Recommended packages:
curl | wget | lynx ca-certificates libarchive-cpio-perl libgpm2 publicsuffix
libltdl-dev libmail-sendmail-perl psmisc
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cmake cmake-data
debhelper dh-autoreconf dh-strip-nondeterminism dwz file gettext
gettext-base groff-base hdf5-helpers intltool-debian libaec-dev libaec0
libarchive-zip-perl libarchive13 libbrotli1 libcunit1 libcunit1-dev libcurl4
libdebhelper-perl libelf1 libexpat1 libfile-stripnondeterminism-perl
libgfortran5 libhdf5-103-1 libhdf5-cpp-103-1 libhdf5-dev libhdf5-fortran-102
libhdf5-hl-100 libhdf5-hl-cpp-100 libhdf5-hl-fortran-100 libicu67
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjsoncpp24 libmagic-mgc
libmagic1 libncurses6 libnghttp2-14 libopenblas-dev libopenblas-pthread-dev
libopenblas0 libopenblas0-pthread libpipeline1 libprocps8 libpsl5 librhash0
librtmp1 libsigsegv2 libsimde-dev libssh2-1 libsub-override-perl libsz2
libtool libuchardet0 libuv1 libxml2 m4 man-db po-debconf procps
sbuild-build-depends-main-dummy sensible-utils zlib1g-dev
0 upgraded, 71 newly installed, 0 to remove and 20 not upgraded.
Need to get 33.8 MB of archives.
After this operation, 147 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [908 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf bsdextrautils armhf 2.36.1-7 [137 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-6 [793 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.3-1 [29.9 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2+20201114-2 [79.9 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf libprocps8 armhf 2:3.3.17-5 [60.5 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf procps armhf 2:3.3.17-5 [475 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.14 [14.8 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.39-3 [117 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.39-3 [68.0 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-14 [313 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.3-2 [814 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf cmake-data all 3.18.4-2+rpi1 [1725 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libicu67 armhf 67.1-6 [8289 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-6.3 [580 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libarchive13 armhf 3.4.3-2 [294 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.9.0-2 [141 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.74.0-1.2 [305 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.10-2 [73.4 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libjsoncpp24 armhf 1.9.4-4 [67.0 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf librhash0 armhf 1.4.1-1 [140 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.40.0-1 [118 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf cmake armhf 3.18.4-2+rpi1 [3118 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.3.4 [189 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.183-1 [161 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13+20210201-1 [164 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.3.4 [1049 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf hdf5-helpers armhf 1.10.6+repack-2 [40.0 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libaec0 armhf 1.0.4-1 [20.0 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libsz2 armhf 1.0.4-1 [6664 B]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libaec-dev armhf 1.0.4-1 [17.8 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libcunit1 armhf 2.1-3-dfsg-2.3 [30.2 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf libcunit1-dev armhf 2.1-3-dfsg-2.3 [58.2 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.2.1-6+rpi1 [232 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-103-1 armhf 1.10.6+repack-2 [1184 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-2 [128 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-2 [93.0 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-100 armhf 1.10.6+repack-2 [78.1 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-2 [49.8 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-2 [36.9 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [122 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [240 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libhdf5-dev armhf 1.10.6+repack-2 [2167 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libopenblas0-pthread armhf 0.3.13+ds-2+rpi1 [2152 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libopenblas0 armhf 0.3.13+ds-2+rpi1 [32.9 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libopenblas-pthread-dev armhf 0.3.13+ds-2+rpi1 [2001 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libopenblas-dev armhf 0.3.13+ds-2+rpi1 [44.2 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libsimde-dev all 0.7.2-4 [259 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libuv1:armhf (1.40.0-1) ...
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Setting up libjpeg62-turbo-dev:armhf (1:2.0.6-4) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.2+20201114-2) ...
Setting up libsigsegv2:armhf (2.13-1) ...
Setting up autopoint (0.21-4) ...
Setting up libgfortran5:armhf (10.2.1-6+rpi1) ...
Setting up libjsoncpp24:armhf (1.9.4-4) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ...
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Setting up librhash0:armhf (1.4.1-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
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Setting up libcunit1:armhf (2.1-3-dfsg-2.3) ...
Setting up libssh2-1:armhf (1.9.0-2) ...
Setting up cmake-data (3.18.4-2+rpi1) ...
Setting up libelf1:armhf (0.183-1) ...
Setting up libxml2:armhf (2.9.10+dfsg-6.3) ...
Setting up libprocps8:armhf (2:3.3.17-5) ...
Setting up libsz2:armhf (1.0.4-1) ...
Setting up libfile-stripnondeterminism-perl (1.11.0-1) ...
Setting up gettext (0.21-4) ...
Setting up libopenblas0-pthread:armhf (0.3.13+ds-2+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libopenblas.so.0 to provide /usr/lib/arm-linux-gnueabihf/libopenblas.so.0 (libopenblas.so.0-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-15) ...
Setting up libarchive13:armhf (3.4.3-2) ...
Setting up libaec-dev:armhf (1.0.4-1) ...
Setting up libjpeg-dev:armhf (1:2.0.6-4) ...
Setting up m4 (1.4.18-5) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libcunit1-dev (2.1-3-dfsg-2.3) ...
Setting up autoconf (2.69-14) ...
Setting up dh-strip-nondeterminism (1.11.0-1) ...
Setting up libhdf5-103-1:armhf (1.10.6+repack-2) ...
Setting up dwz (0.13+20210201-1) ...
Setting up libopenblas0:armhf (0.3.13+ds-2+rpi1) ...
Setting up groff-base (1.22.4-6) ...
Setting up procps (2:3.3.17-5) ...
Setting up libhdf5-cpp-103-1:armhf (1.10.6+repack-2) ...
Setting up libcurl4:armhf (7.74.0-1.2) ...
Setting up libhdf5-hl-100:armhf (1.10.6+repack-2) ...
Setting up automake (1:1.16.3-2) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libopenblas-pthread-dev:armhf (0.3.13+ds-2+rpi1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
update-alternatives: using /usr/lib/arm-linux-gnueabihf/openblas-pthread/libopenblas.so to provide /usr/lib/arm-linux-gnueabihf/libopenblas.so (libopenblas.so-arm-linux-gnueabihf) in auto mode
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.9.4-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up dh-autoreconf (20) ...
Setting up libopenblas-dev:armhf (0.3.13+ds-2+rpi1) ...
Setting up libhdf5-hl-cpp-100:armhf (1.10.6+repack-2) ...
Setting up libhdf5-fortran-102:armhf (1.10.6+repack-2) ...
Setting up cmake (3.18.4-2+rpi1) ...
Setting up libhdf5-hl-fortran-100:armhf (1.10.6+repack-2) ...
Setting up debhelper (13.3.4) ...
Setting up libhdf5-dev (1.10.6+repack-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.31-10+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.35.2-2+rpi1 dpkg-dev_1.20.7.1+rpi1 g++-10_10.2.1-6+rpi1 gcc-10_10.2.1-6+rpi1 libc6-dev_2.31-10+rpi1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 linux-libc-dev_5.10.24-1+rpi1
Package versions: adduser_3.118 apt_2.2.2 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11+rpi1 base-passwd_3.5.49 bash_5.1-2 binutils_2.35.2-2+rpi1 binutils-arm-linux-gnueabihf_2.35.2-2+rpi1 binutils-common_2.35.2-2+rpi1 bsdextrautils_2.36.1-7 bsdutils_1:2.36.1-7 build-essential_12.9 bzip2_1.0.8-4 cmake_3.18.4-2+rpi1 cmake-data_3.18.4-2+rpi1 coreutils_8.32-4 cpp_4:10.2.1-1+rpi1 cpp-10_10.2.1-6+rpi1 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.75 debhelper_13.3.4 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.11.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-1 dpkg_1.20.7.1+rpi1 dpkg-dev_1.20.7.1+rpi1 dwz_0.13+20210201-1 e2fsprogs_1.46.2-1 fakeroot_1.25.3-1.1 file_1:5.39-3 findutils_4.8.0-1 g++_4:10.2.1-1+rpi1 g++-10_10.2.1-6+rpi1 gcc_4:10.2.1-1+rpi1 gcc-10_10.2.1-6+rpi1 gcc-10-base_10.2.1-6+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.3.0-22+rpi1 gettext_0.21-4 gettext-base_0.21-4 gnupg_2.2.27-1 gnupg-l10n_2.2.27-1 gnupg-utils_2.2.27-1 gpg_2.2.27-1 gpg-agent_2.2.27-1 gpg-wks-client_2.2.27-1 gpg-wks-server_2.2.27-1 gpgconf_2.2.27-1 gpgsm_2.2.27-1 gpgv_2.2.27-1 grep_3.6-1 groff-base_1.22.4-6 gzip_1.10-4 hdf5-helpers_1.10.6+repack-2 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-10 libaec-dev_1.0.4-1 libaec0_1.0.4-1 libapt-pkg6.0_2.2.2 libarchive-zip-perl_1.68-1 libarchive13_3.4.3-2 libasan6_10.2.1-6+rpi1 libassuan0_2.5.3-7.1 libatomic1_10.2.1-6+rpi1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.2-2+rpi1 libblkid1_2.36.1-7 libbrotli1_1.0.9-2+b1 libbz2-1.0_1.0.8-4 libc-bin_2.31-10+rpi1 libc-dev-bin_2.31-10+rpi1 libc6_2.31-10+rpi1 libc6-dev_2.31-10+rpi1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-6+rpi1 libcom-err2_1.46.2-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.2-2+rpi1 libctf0_2.35.2-2+rpi1 libcunit1_2.1-3-dfsg-2.3 libcunit1-dev_2.1-3-dfsg-2.3 libcurl4_7.74.0-1.2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.256 libdebhelper-perl_13.3.4 libdpkg-perl_1.20.7.1+rpi1 libelf1_0.183-1 libexpat1_2.2.10-2 libext2fs2_1.46.2-1 libfakeroot_1.25.3-1.1 libffi7_3.3-6 libfile-stripnondeterminism-perl_1.11.0-1 libgcc-10-dev_10.2.1-6+rpi1 libgcc-s1_10.2.1-6+rpi1 libgcrypt20_1.8.7-3 libgdbm-compat4_1.19-2 libgdbm6_1.19-2 libgfortran5_10.2.1-6+rpi1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.1-1 libgomp1_10.2.1-6+rpi1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhdf5-103-1_1.10.6+repack-2 libhdf5-cpp-103-1_1.10.6+repack-2 libhdf5-dev_1.10.6+repack-2 libhdf5-fortran-102_1.10.6+repack-2 libhdf5-hl-100_1.10.6+repack-2 libhdf5-hl-cpp-100_1.10.6+repack-2 libhdf5-hl-fortran-100_1.10.6+repack-2 libhogweed6_3.7-2.1 libicu67_67.1-6 libidn2-0_2.3.0-5 libisl23_0.23-1 libjpeg-dev_1:2.0.6-4 libjpeg62-turbo_1:2.0.6-4 libjpeg62-turbo-dev_1:2.0.6-4 libjsoncpp24_1.9.4-4 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 libksba8_1.5.0-3 libldap-2.4-2_2.4.57+dfsg-2 liblocale-gettext-perl_1.07-4+b1 liblz4-1_1.9.3-1+rpi1 liblzma5_5.2.5-2 libmagic-mgc_1:5.39-3 libmagic1_1:5.39-3 libmount1_2.36.1-7 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libncurses6_6.2+20201114-2 libncursesw6_6.2+20201114-2 libnettle8_3.7-2.1 libnghttp2-14_1.43.0-1 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnss-nis_3.1-4 libnss-nisplus_1.3-4 libopenblas-dev_0.3.13+ds-2+rpi1 libopenblas-pthread-dev_0.3.13+ds-2+rpi1 libopenblas0_0.3.13+ds-2+rpi1 libopenblas0-pthread_0.3.13+ds-2+rpi1 libp11-kit0_0.23.22-1 libpam-modules_1.4.0-7 libpam-modules-bin_1.4.0-7 libpam-runtime_1.4.0-7 libpam0g_1.4.0-7 libpcre2-8-0_10.36-2 libpcre3_2:8.39-13 libperl5.32_5.32.1-3 libpipeline1_1.5.3-1 libprocps8_2:3.3.17-5 libpsl5_0.21.0-1.2 libreadline8_8.1-1 librhash0_1.4.1-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.27+dfsg-2.1 libsasl2-modules-db_2.1.27+dfsg-2.1 libseccomp2_2.5.1-1+rpi1 libselinux1_3.1-3 libsemanage-common_3.1-1 libsemanage1_3.1-1+b1 libsepol1_3.1-1 libsigsegv2_2.13-1 libsimde-dev_0.7.2-4 libsmartcols1_2.36.1-7 libsqlite3-0_3.34.1-3 libss2_1.46.2-1 libssh2-1_1.9.0-2 libssl1.1_1.1.1k-1 libstdc++-10-dev_10.2.1-6+rpi1 libstdc++6_10.2.1-6+rpi1 libsub-override-perl_0.09-2 libsystemd0_247.3-1+rpi1 libsz2_1.0.4-1 libtasn1-6_4.16.0-2 libtext-iconv-perl_1.7-7+b1 libtinfo6_6.2+20201114-2 libtirpc-common_1.3.1-1 libtirpc-dev_1.3.1-1 libtirpc3_1.3.1-1 libtool_2.4.6-15 libubsan1_10.2.1-6+rpi1 libuchardet0_0.0.7-1 libudev1_247.3-1+rpi1 libunistring2_0.9.10-4 libuuid1_2.36.1-7 libuv1_1.40.0-1 libxml2_2.9.10+dfsg-6.3 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-2.1 linux-libc-dev_5.10.24-1+rpi1 login_1:4.8.1-1 logsave_1.46.2-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.36.1-7 ncurses-base_6.2+20201114-2 ncurses-bin_6.2+20201114-2 passwd_1:4.8.1-1 patch_2.7.6-7 perl_5.32.1-3 perl-base_5.32.1-3 perl-modules-5.32_5.32.1-3 pinentry-curses_1.1.0-4 po-debconf_1.0.21+nmu1 procps_2:3.3.17-5 raspbian-archive-keyring_20120528.2 readline-common_8.1-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.14 sysvinit-utils_2.96-6 tar_1.34+dfsg-1 tzdata_2021a-1 util-linux_2.36.1-7 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: scrappie
Binary: scrappie
Architecture: any
Version: 1.4.2-7
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>, Nilesh Patra <nilesh@debian.org>
Homepage: https://github.com/nanoporetech/scrappie
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/scrappie
Vcs-Git: https://salsa.debian.org/med-team/scrappie.git
Testsuite: autopkgtest
Testsuite-Triggers: python3
Build-Depends: debhelper-compat (= 13), libcunit1-dev, libhdf5-dev, libopenblas-dev, cmake, libsimde-dev
Package-List:
scrappie deb science optional arch=any
Checksums-Sha1:
8b814eb0c20e2280711cd7343ad23ecc4f46dd77 21753974 scrappie_1.4.2.orig.tar.gz
930624fd3a03a48b5cb642215c7bdbb8c1ba65b0 14208 scrappie_1.4.2-7.debian.tar.xz
Checksums-Sha256:
160f3e462a6e079e55da4de8d3bd232243ff988530cfe649038feccc9bb79797 21753974 scrappie_1.4.2.orig.tar.gz
67461446aa9436ad6dec449fef5b0b46b8cecbf1392ab430fc0876dc042a75c5 14208 scrappie_1.4.2-7.debian.tar.xz
Files:
12e5332496f8c329af9f1e968cbc96dc 21753974 scrappie_1.4.2.orig.tar.gz
a2ab61c3b3b09be70dfa62094133a779 14208 scrappie_1.4.2-7.debian.tar.xz
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.E9H56dq6/trustedkeys.kbx': General error
gpgv: Signature made Sat Apr 3 19:21:39 2021 UTC
gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1
gpgv: issuer "npatra974@gmail.com"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./scrappie_1.4.2-7.dsc
dpkg-source: info: extracting scrappie in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking scrappie_1.4.2.orig.tar.gz
dpkg-source: info: unpacking scrappie_1.4.2-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying simde.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=28324993283040c09eb51e44c2225ece
JOURNAL_STREAM=8:20070
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-6ea85dc9-f73f-4678-857b-09f842405dd9
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c8356
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package scrappie
dpkg-buildpackage: info: source version 1.4.2-7
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem=cmake
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
rm -Rf build_*
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=cmake
dh_clean -O--buildsystem=cmake
rm -f debian/debhelper-build-stamp
rm -rf debian/.debhelper/
rm -f -- debian/scrappie.substvars debian/files
rm -fr -- debian/scrappie/ debian/tmp/
find . \( \( \
\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
\( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
-o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
-o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
-o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
\) -exec rm -f {} + \) -o \
\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
debian/rules binary-arch
dh binary-arch --buildsystem=cmake
dh_update_autotools_config -a -O--buildsystem=cmake
dh_autoreconf -a -O--buildsystem=cmake
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure
install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
install -d obj-arm-linux-gnueabihf
cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf ..
-- The C compiler identification is GNU 10.2.1
-- Detecting C compiler ABI info
-- Detecting C compiler ABI info - done
-- Check for working C compiler: /usr/bin/cc - skipped
-- Detecting C compile features
-- Detecting C compile features - done
-- Performing Test HAS_OPENMP
-- Performing Test HAS_OPENMP - Success
-- Looking for hdf5.h
-- Looking for hdf5.h - not found
-- Looking for hdf5/serial/hdf5.h
-- Looking for hdf5/serial/hdf5.h - found
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
CMAKE_EXPORT_NO_PACKAGE_REGISTRY
CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
CMAKE_INSTALL_LIBDIR
CMAKE_INSTALL_LOCALSTATEDIR
CMAKE_INSTALL_RUNSTATEDIR
CMAKE_INSTALL_SYSCONFDIR
-- Build files have been written to: /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f debian/scrappie.debhelper.log
debian/rules override_dh_auto_build
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_build
cd obj-arm-linux-gnueabihf && make -j4 "INSTALL=install --strip-program=true" VERBOSE=1
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks
make -f CMakeFiles/Makefile2 all
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/scrappie_objects.dir/build.make CMakeFiles/scrappie_objects.dir/depend
make -f CMakeFiles/test_interface.dir/build.make CMakeFiles/test_interface.dir/depend
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
cd /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/scrappie_objects.dir/DependInfo.cmake --color=
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Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/scrappie_objects.dir/DependInfo.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/scrappie_objects.dir/depend.internal".
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Scanning dependencies of target test_interface
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make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 2%] Building C object CMakeFiles/test_interface.dir/src/test_interface.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/test_interface.dir/src/test_interface.c.o -c /<<PKGBUILDDIR>>/src/test_interface.c
Scanning dependencies of target scrappie_objects
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[ 10%] Building C object CMakeFiles/scrappie_objects.dir/src/decode.c.o
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/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/event_detection.c.o -c /<<PKGBUILDDIR>>/src/event_detection.c
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/layers.c.o -c /<<PKGBUILDDIR>>/src/layers.c
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/decode.c.o -c /<<PKGBUILDDIR>>/src/decode.c
[ 13%] Linking C executable test_interface
/usr/bin/cmake -E cmake_link_script CMakeFiles/test_interface.dir/link.txt --verbose=1
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[ 15%] Building C object CMakeFiles/scrappie_objects.dir/src/networks.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/networks.c.o -c /<<PKGBUILDDIR>>/src/networks.c
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[ 18%] Building C object CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/nnfeatures.c.o -c /<<PKGBUILDDIR>>/src/nnfeatures.c
[ 21%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_common.c.o -c /<<PKGBUILDDIR>>/src/scrappie_common.c
[ 23%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_matrix.c.o -c /<<PKGBUILDDIR>>/src/scrappie_matrix.c
[ 26%] Building C object CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/scrappie_seq_helpers.c.o -c /<<PKGBUILDDIR>>/src/scrappie_seq_helpers.c
[ 28%] Building C object CMakeFiles/scrappie_objects.dir/src/util.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -fPIC -o CMakeFiles/scrappie_objects.dir/src/util.c.o -c /<<PKGBUILDDIR>>/src/util.c
[ 31%] Building C object CMakeFiles/scrappie_objects.dir/src/homopolymer.c.o
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Dependee "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles/scrappie_unittest.dir/depend.internal".
Scanning dependencies of target scrappie_unittest
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/scrappie_unittest.dir/build.make CMakeFiles/scrappie_unittest.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Scanning dependencies of target scrappie
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make -f CMakeFiles/scrappie.dir/build.make CMakeFiles/scrappie.dir/build
make[4]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[ 36%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o
[ 39%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o
[ 42%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o -c /<<PKGBUILDDIR>>/src/test/scrappie_test_runner.c
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o -c /<<PKGBUILDDIR>>/src/test/test_scrappie_util.c
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o -c /<<PKGBUILDDIR>>/src/test/test_map_to_sequence.c
[ 44%] Building C object CMakeFiles/scrappie.dir/src/scrappie.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie.c.o -c /<<PKGBUILDDIR>>/src/scrappie.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33,
from /usr/include/stdint.h:26,
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from /usr/include/simde/x86/avx.h:28,
from /<<PKGBUILDDIR>>/src/scrappie_matrix.h:6,
from /<<PKGBUILDDIR>>/src/test/scrappie_util.h:4,
from /<<PKGBUILDDIR>>/src/test/test_scrappie_util.c:6:
/usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
[ 47%] Building C object CMakeFiles/scrappie.dir/src/scrappie_raw.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o -c /<<PKGBUILDDIR>>/src/scrappie_raw.c
[ 50%] Building C object CMakeFiles/scrappie.dir/src/scrappie_events.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_events.c.o -c /<<PKGBUILDDIR>>/src/scrappie_events.c
[ 52%] Building C object CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o -c /<<PKGBUILDDIR>>/src/scrappie_mappy.c
[ 55%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o -c /<<PKGBUILDDIR>>/src/test/scrappie_util.c
In file included from /usr/include/arm-linux-gnueabihf/bits/libc-header-start.h:33,
from /usr/include/math.h:27,
from /<<PKGBUILDDIR>>/src/test/scrappie_util.c:4:
/usr/include/features.h:187:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
187 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
| ^~~~~~~
[ 57%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o -c /<<PKGBUILDDIR>>/src/test/test_scrappie_convolution.c
[ 60%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o -c /<<PKGBUILDDIR>>/src/test/test_skeleton.c
[ 63%] Building C object CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o -c /<<PKGBUILDDIR>>/src/scrappie_seqmappy.c
[ 65%] Building C object CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o -c /<<PKGBUILDDIR>>/src/scrappie_squiggle.c
[ 68%] Building C object CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o -c /<<PKGBUILDDIR>>/src/scrappie_subcommands.c
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/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o -c /<<PKGBUILDDIR>>/src/test/test_scrappie_decoding.c
[ 73%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o -c /<<PKGBUILDDIR>>/src/test/test_scrappie_elu.c
[ 76%] Building C object CMakeFiles/scrappie.dir/src/scrappie_help.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_help.c.o -c /<<PKGBUILDDIR>>/src/scrappie_help.c
[ 78%] Building C object CMakeFiles/scrappie.dir/src/fast5_interface.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/fast5_interface.c.o -c /<<PKGBUILDDIR>>/src/fast5_interface.c
[ 81%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o -c /<<PKGBUILDDIR>>/src/test/test_scrappie_event_detection.c
[ 84%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o -c /<<PKGBUILDDIR>>/src/test/test_scrappie_matrix.c
[ 86%] Building C object CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -c /<<PKGBUILDDIR>>/src/scrappie_event_table.c
[ 89%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o -c /<<PKGBUILDDIR>>/src/test/test_scrappie_signal.c
[ 92%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o -c /<<PKGBUILDDIR>>/src/test/test_scrappie_squiggle.c
/<<PKGBUILDDIR>>/src/scrappie_event_table.c: In function ‘main_event_table’:
/<<PKGBUILDDIR>>/src/scrappie_event_table.c:155:42: warning: format ‘%zu’ expects argument of type ‘size_t’, but argument 4 has type ‘uint64_t’ {aka ‘long long unsigned int’} [-Wformat=]
155 | fprintf(args.output, "%zu\t%zu\t%f\t%f\t%d\n", i, ev.start, ev.mean, ev.stdv, (int)ev.length);
| ~~^ ~~~~~~~~
| | |
| unsigned int uint64_t {aka long long unsigned int}
| %llu
[ 94%] Building C object CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o
/usr/bin/cc -I/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/include -I/usr/include/hdf5/serial -I/<<PKGBUILDDIR>>/src/test -I/<<PKGBUILDDIR>>/src -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -c /<<PKGBUILDDIR>>/src/test/test_util.c
[ 97%] Linking C executable scrappie
/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie.dir/src/scrappie.c.o CMakeFiles/scrappie.dir/src/scrappie_raw.c.o CMakeFiles/scrappie.dir/src/scrappie_events.c.o CMakeFiles/scrappie.dir/src/scrappie_mappy.c.o CMakeFiles/scrappie.dir/src/scrappie_seqmappy.c.o CMakeFiles/scrappie.dir/src/scrappie_squiggle.c.o CMakeFiles/scrappie.dir/src/scrappie_subcommands.c.o CMakeFiles/scrappie.dir/src/scrappie_help.c.o CMakeFiles/scrappie.dir/src/fast5_interface.c.o CMakeFiles/scrappie.dir/src/scrappie_event_table.c.o -o scrappie libscrappie.a -lblas -lhdf5_serial -lm
[100%] Linking C executable scrappie_unittest
/usr/bin/cmake -E cmake_link_script CMakeFiles/scrappie_unittest.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/scrappie_unittest.dir/src/test/scrappie_test_runner.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_map_to_sequence.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/scrappie_util.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_convolution.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_skeleton.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_decoding.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_elu.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_event_detection.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_matrix.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_signal.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_scrappie_squiggle.c.o CMakeFiles/scrappie_unittest.dir/src/test/test_util.c.o -o scrappie_unittest libscrappie.a -lblas -lhdf5_serial -lm -lcunit
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target scrappie
make[4]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
[100%] Built target scrappie_unittest
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf/CMakeFiles 0
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make[1]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f debian/scrappie.debhelper.log
debian/rules override_dh_auto_test
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_test
cd obj-arm-linux-gnueabihf && make -j4 test ARGS\+=-j4
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j4
Test project /<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf
Start 1: unittest
Start 2: test_events_call
Start 3: test_raw_call
Start 4: test_rawrgrgr_r94_call
1/19 Test #1: unittest ......................... Passed 90.67 sec
Start 5: test_rawrgrgr_r941_call
2/19 Test #2: test_events_call ................. Passed 4989.26 sec
Start 6: test_rawrgrgr_r10_call
3/19 Test #3: test_raw_call .................... Passed 5463.63 sec
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4/19 Test #5: test_rawrgrgr_r941_call .......... Passed 6401.33 sec
Start 8: test_event_table
5/19 Test #8: test_event_table ................. Passed 0.69 sec
Start 9: test_mappy
6/19 Test #9: test_mappy ....................... Passed 8.38 sec
Start 10: test_seqmappy
7/19 Test #4: test_rawrgrgr_r94_call ........... Passed 7910.22 sec
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8/19 Test #11: test_squiggle_r94 ................ Passed 22.32 sec
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9/19 Test #12: test_squiggle_r10 ................ Passed 22.27 sec
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10/19 Test #13: test_licence ..................... Passed 0.13 sec
Start 14: test_help
11/19 Test #14: test_help ........................ Passed 0.09 sec
Start 15: test_help_events
12/19 Test #15: test_help_events ................. Passed 0.10 sec
Start 16: test_help_event_table
13/19 Test #16: test_help_event_table ............ Passed 0.09 sec
Start 17: test_help_raw
14/19 Test #17: test_help_raw .................... Passed 0.12 sec
Start 18: test_help_squiggle
15/19 Test #18: test_help_squiggle ............... Passed 0.10 sec
Start 19: test_version
16/19 Test #19: test_version ..................... Passed 0.10 sec
17/19 Test #10: test_seqmappy .................... Passed 2466.57 sec
18/19 Test #6: test_rawrgrgr_r10_call ........... Passed 4497.95 sec
19/19 Test #7: test_rawrnnrf_r94_call ........... Passed 4079.06 sec
100% tests passed, 0 tests failed out of 19
Total Test time (real) = 9542.71 sec
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
rm -fr -- /tmp/dh-xdg-rundir-CGMNUXS7
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=cmake
dh_prep -a -O--buildsystem=cmake
rm -f -- debian/scrappie.substvars
rm -fr -- debian/.debhelper/generated/scrappie/ debian/scrappie/ debian/tmp/
rm -f debian/scrappie.debhelper.log
debian/rules override_dh_auto_install
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_install
install -d /<<PKGBUILDDIR>>/debian/scrappie
cd obj-arm-linux-gnueabihf && make -j4 install DESTDIR=/<<PKGBUILDDIR>>/debian/scrappie AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[3]: Nothing to be done for 'preinstall'.
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /<<PKGBUILDDIR>>/debian/scrappie/usr/bin/scrappie
-- Installing: /<<PKGBUILDDIR>>/debian/scrappie/usr/lib/libscrappie.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-arm-linux-gnueabihf'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_installdocs -a -O--buildsystem=cmake
install -d debian/scrappie/usr/share/doc/scrappie
install -d debian/.debhelper/generated/scrappie
install -p -m0644 debian/copyright debian/scrappie/usr/share/doc/scrappie/copyright
dh_installchangelogs -a -O--buildsystem=cmake
install -p -m0644 debian/changelog debian/scrappie/usr/share/doc/scrappie/changelog.Debian
dh_installman -a -O--buildsystem=cmake
install -d debian/scrappie/usr/share/man/man1/
install -p -m0644 ./debian/scrappie.1 debian/scrappie/usr/share/man/man1/scrappie.1
man-recode --to-code UTF-8 --suffix .dh-new debian/scrappie/usr/share/man/man1/scrappie.1
mv debian/scrappie/usr/share/man/man1/scrappie.1.dh-new debian/scrappie/usr/share/man/man1/scrappie.1
chmod 0644 -- debian/scrappie/usr/share/man/man1/scrappie.1
dh_installsystemduser -a -O--buildsystem=cmake
dh_lintian -a -O--buildsystem=cmake
install -d debian/scrappie/usr/share/lintian/overrides
install -p -m0644 debian/lintian-overrides debian/scrappie/usr/share/lintian/overrides/scrappie
dh_perl -a -O--buildsystem=cmake
dh_link -a -O--buildsystem=cmake
dh_strip_nondeterminism -a -O--buildsystem=cmake
dh_compress -a -O--buildsystem=cmake
cd debian/scrappie
chmod a-x usr/share/doc/scrappie/changelog.Debian usr/share/man/man1/scrappie.1
gzip -9nf usr/share/doc/scrappie/changelog.Debian usr/share/man/man1/scrappie.1
cd '/<<PKGBUILDDIR>>'
dh_fixperms -a -O--buildsystem=cmake
find debian/scrappie ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s
find debian/scrappie/usr/share/doc -type f -a -true -a ! -regex 'debian/scrappie/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644
find debian/scrappie/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755
find debian/scrappie/usr/share/man debian/scrappie/usr/share/lintian/overrides -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/scrappie -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644
find debian/scrappie/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x
find debian/scrappie/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w
dh_missing -a -O--buildsystem=cmake
dh_dwz -a -a -O--buildsystem=cmake
dwz -- debian/scrappie/usr/bin/scrappie
dh_strip -a -a -O--buildsystem=cmake
install -d debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d3
objcopy --only-keep-debug --compress-debug-sections debian/scrappie/usr/bin/scrappie debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d3/92abc628ff8463c893c16a2347a8739ecc6e1d.debug
chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d3/92abc628ff8463c893c16a2347a8739ecc6e1d.debug
strip --remove-section=.comment --remove-section=.note debian/scrappie/usr/bin/scrappie
objcopy --add-gnu-debuglink debian/.debhelper/scrappie/dbgsym-root/usr/lib/debug/.build-id/d3/92abc628ff8463c893c16a2347a8739ecc6e1d.debug debian/scrappie/usr/bin/scrappie
strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives -R .gnu.lto_\* -R .gnu.debuglto_\* -N __gnu_lto_slim -N __gnu_lto_v1 debian/scrappie/usr/lib/libscrappie.a
install -d debian/.debhelper/scrappie/dbgsym-root/usr/share/doc
ln -s scrappie debian/.debhelper/scrappie/dbgsym-root/usr/share/doc/scrappie-dbgsym
dh_makeshlibs -a -a -O--buildsystem=cmake
rm -f debian/scrappie/DEBIAN/shlibs
dh_shlibdeps -a -a -O--buildsystem=cmake
install -d debian/scrappie/DEBIAN
dpkg-shlibdeps -Tdebian/scrappie.substvars debian/scrappie/usr/bin/scrappie
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/scrappie/usr/bin/scrappie was not linked against ld-linux-armhf.so.3 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=cmake
rm -f debian/scrappie.debhelper.log
debian/rules override_dh_gencontrol
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-4), "
echo misc:Depends= >> debian/scrappie.substvars
echo misc:Pre-Depends= >> debian/scrappie.substvars
install -d debian/.debhelper/scrappie/dbgsym-root/DEBIAN
dpkg-gencontrol -pscrappie -ldebian/changelog -Tdebian/scrappie.substvars -Pdebian/.debhelper/scrappie/dbgsym-root "-Vsimde:Built-Using=simde (= 0.7.2-4), " -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=scrappie-dbgsym "-DDepends=scrappie (= \${binary:Version})" "-DDescription=debug symbols for scrappie" -DBuild-Ids=d392abc628ff8463c893c16a2347a8739ecc6e1d -DSection=debug -UMulti-Arch -UReplaces -UBreaks
chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/DEBIAN/control
dpkg-gencontrol -pscrappie -ldebian/changelog -Tdebian/scrappie.substvars -Pdebian/scrappie "-Vsimde:Built-Using=simde (= 0.7.2-4), "
chmod 0644 -- debian/scrappie/DEBIAN/control
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_md5sums -a -O--buildsystem=cmake
cd debian/scrappie >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/scrappie/DEBIAN/md5sums
cd debian/.debhelper/scrappie/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums
chmod 0644 -- debian/.debhelper/scrappie/dbgsym-root/DEBIAN/md5sums
dh_builddeb -a -O--buildsystem=cmake
dpkg-deb --root-owner-group --build debian/scrappie ..
dpkg-deb --root-owner-group --build debian/.debhelper/scrappie/dbgsym-root ..
dpkg-deb: building package 'scrappie' in '../scrappie_1.4.2-7_armhf.deb'.
dpkg-deb: building package 'scrappie-dbgsym' in '../scrappie-dbgsym_1.4.2-7_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> >../scrappie_1.4.2-7_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2021-04-24T07:48:52Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
scrappie_1.4.2-7_armhf.changes:
-------------------------------
Format: 1.8
Date: Sun, 04 Apr 2021 00:40:23 +0530
Source: scrappie
Binary: scrappie scrappie-dbgsym
Architecture: armhf
Version: 1.4.2-7
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Nilesh Patra <nilesh@debian.org>
Description:
scrappie - basecaller for Nanopore sequencer
Changes:
scrappie (1.4.2-7) unstable; urgency=medium
.
* Skip one assertion test on ppc64el
Checksums-Sha1:
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657c93b6dbc7fcce0d857d27e0b0b897b65fcbf5 6414 scrappie_1.4.2-7_armhf.buildinfo
a3a9250f7f351378ce62f64f047cb6f0a5359e15 18336216 scrappie_1.4.2-7_armhf.deb
Checksums-Sha256:
596e542d9fc0c397458297f118993340304c24de534579335424741509acad3b 192368 scrappie-dbgsym_1.4.2-7_armhf.deb
0720761b4ded3e2a06f25479b00747212f17ed88921729136c3e5d188497b8d6 6414 scrappie_1.4.2-7_armhf.buildinfo
3bc6d81b1d3f1102e823b38dcc065ef679eebbf1cd4891f8819fda3a3a79f49c 18336216 scrappie_1.4.2-7_armhf.deb
Files:
bd21f9891df233a4c5ed694f34a925ca 192368 debug optional scrappie-dbgsym_1.4.2-7_armhf.deb
cd3ccec0a359699ac794102069729d8e 6414 science optional scrappie_1.4.2-7_armhf.buildinfo
0aab35cf10c7e11f085b238f7b5ff501 18336216 science optional scrappie_1.4.2-7_armhf.deb
+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: scrappie
Binary: scrappie scrappie-dbgsym
Architecture: armhf
Version: 1.4.2-7
Checksums-Md5:
bd21f9891df233a4c5ed694f34a925ca 192368 scrappie-dbgsym_1.4.2-7_armhf.deb
0aab35cf10c7e11f085b238f7b5ff501 18336216 scrappie_1.4.2-7_armhf.deb
Checksums-Sha1:
73d846668e727987c55589a1ebdf9fa262dbf409 192368 scrappie-dbgsym_1.4.2-7_armhf.deb
a3a9250f7f351378ce62f64f047cb6f0a5359e15 18336216 scrappie_1.4.2-7_armhf.deb
Checksums-Sha256:
596e542d9fc0c397458297f118993340304c24de534579335424741509acad3b 192368 scrappie-dbgsym_1.4.2-7_armhf.deb
3bc6d81b1d3f1102e823b38dcc065ef679eebbf1cd4891f8819fda3a3a79f49c 18336216 scrappie_1.4.2-7_armhf.deb
Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sat, 24 Apr 2021 07:48:50 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
autoconf (= 2.69-14),
automake (= 1:1.16.3-2),
autopoint (= 0.21-4),
autotools-dev (= 20180224.1+nmu1),
base-files (= 11+rpi1),
base-passwd (= 3.5.49),
bash (= 5.1-2),
binutils (= 2.35.2-2+rpi1),
binutils-arm-linux-gnueabihf (= 2.35.2-2+rpi1),
binutils-common (= 2.35.2-2+rpi1),
bsdextrautils (= 2.36.1-7),
bsdutils (= 1:2.36.1-7),
build-essential (= 12.9),
bzip2 (= 1.0.8-4),
cmake (= 3.18.4-2+rpi1),
cmake-data (= 3.18.4-2+rpi1),
coreutils (= 8.32-4),
cpp (= 4:10.2.1-1+rpi1),
cpp-10 (= 10.2.1-6+rpi1),
dash (= 0.5.11+git20200708+dd9ef66-5),
debconf (= 1.5.75),
debhelper (= 13.3.4),
debianutils (= 4.11.2),
dh-autoreconf (= 20),
dh-strip-nondeterminism (= 1.11.0-1),
diffutils (= 1:3.7-5),
dpkg (= 1.20.7.1+rpi1),
dpkg-dev (= 1.20.7.1+rpi1),
dwz (= 0.13+20210201-1),
file (= 1:5.39-3),
findutils (= 4.8.0-1),
g++ (= 4:10.2.1-1+rpi1),
g++-10 (= 10.2.1-6+rpi1),
gcc (= 4:10.2.1-1+rpi1),
gcc-10 (= 10.2.1-6+rpi1),
gcc-10-base (= 10.2.1-6+rpi1),
gettext (= 0.21-4),
gettext-base (= 0.21-4),
grep (= 3.6-1),
groff-base (= 1.22.4-6),
gzip (= 1.10-4),
hdf5-helpers (= 1.10.6+repack-2),
hostname (= 3.23),
init-system-helpers (= 1.60),
intltool-debian (= 0.35.0+20060710.5),
libacl1 (= 2.2.53-10),
libaec-dev (= 1.0.4-1),
libaec0 (= 1.0.4-1),
libarchive-zip-perl (= 1.68-1),
libarchive13 (= 3.4.3-2),
libasan6 (= 10.2.1-6+rpi1),
libatomic1 (= 10.2.1-6+rpi1),
libattr1 (= 1:2.4.48-6),
libaudit-common (= 1:3.0-2),
libaudit1 (= 1:3.0-2),
libbinutils (= 2.35.2-2+rpi1),
libblkid1 (= 2.36.1-7),
libbrotli1 (= 1.0.9-2+b1),
libbz2-1.0 (= 1.0.8-4),
libc-bin (= 2.31-10+rpi1),
libc-dev-bin (= 2.31-10+rpi1),
libc6 (= 2.31-10+rpi1),
libc6-dev (= 2.31-10+rpi1),
libcap-ng0 (= 0.7.9-2.2+b1),
libcc1-0 (= 10.2.1-6+rpi1),
libcom-err2 (= 1.46.2-1),
libcrypt-dev (= 1:4.4.17-1),
libcrypt1 (= 1:4.4.17-1),
libctf-nobfd0 (= 2.35.2-2+rpi1),
libctf0 (= 2.35.2-2+rpi1),
libcunit1 (= 2.1-3-dfsg-2.3),
libcunit1-dev (= 2.1-3-dfsg-2.3),
libcurl4 (= 7.74.0-1.2),
libdb5.3 (= 5.3.28+dfsg1-0.8),
libdebconfclient0 (= 0.256),
libdebhelper-perl (= 13.3.4),
libdpkg-perl (= 1.20.7.1+rpi1),
libelf1 (= 0.183-1),
libexpat1 (= 2.2.10-2),
libffi7 (= 3.3-6),
libfile-stripnondeterminism-perl (= 1.11.0-1),
libgcc-10-dev (= 10.2.1-6+rpi1),
libgcc-s1 (= 10.2.1-6+rpi1),
libgcrypt20 (= 1.8.7-3),
libgdbm-compat4 (= 1.19-2),
libgdbm6 (= 1.19-2),
libgfortran5 (= 10.2.1-6+rpi1),
libgmp10 (= 2:6.2.1+dfsg-1),
libgnutls30 (= 3.7.1-1),
libgomp1 (= 10.2.1-6+rpi1),
libgpg-error0 (= 1.38-2),
libgssapi-krb5-2 (= 1.18.3-4),
libhdf5-103-1 (= 1.10.6+repack-2),
libhdf5-cpp-103-1 (= 1.10.6+repack-2),
libhdf5-dev (= 1.10.6+repack-2),
libhdf5-fortran-102 (= 1.10.6+repack-2),
libhdf5-hl-100 (= 1.10.6+repack-2),
libhdf5-hl-cpp-100 (= 1.10.6+repack-2),
libhdf5-hl-fortran-100 (= 1.10.6+repack-2),
libhogweed6 (= 3.7-2.1),
libicu67 (= 67.1-6),
libidn2-0 (= 2.3.0-5),
libisl23 (= 0.23-1),
libjpeg-dev (= 1:2.0.6-4),
libjpeg62-turbo (= 1:2.0.6-4),
libjpeg62-turbo-dev (= 1:2.0.6-4),
libjsoncpp24 (= 1.9.4-4),
libk5crypto3 (= 1.18.3-4),
libkeyutils1 (= 1.6.1-2),
libkrb5-3 (= 1.18.3-4),
libkrb5support0 (= 1.18.3-4),
libldap-2.4-2 (= 2.4.57+dfsg-2),
liblz4-1 (= 1.9.3-1+rpi1),
liblzma5 (= 5.2.5-2),
libmagic-mgc (= 1:5.39-3),
libmagic1 (= 1:5.39-3),
libmount1 (= 2.36.1-7),
libmpc3 (= 1.2.0-1),
libmpfr6 (= 4.1.0-3),
libncurses6 (= 6.2+20201114-2),
libncursesw6 (= 6.2+20201114-2),
libnettle8 (= 3.7-2.1),
libnghttp2-14 (= 1.43.0-1),
libnsl-dev (= 1.3.0-2),
libnsl2 (= 1.3.0-2),
libopenblas-dev (= 0.3.13+ds-2+rpi1),
libopenblas-pthread-dev (= 0.3.13+ds-2+rpi1),
libopenblas0 (= 0.3.13+ds-2+rpi1),
libopenblas0-pthread (= 0.3.13+ds-2+rpi1),
libp11-kit0 (= 0.23.22-1),
libpam-modules (= 1.4.0-7),
libpam-modules-bin (= 1.4.0-7),
libpam-runtime (= 1.4.0-7),
libpam0g (= 1.4.0-7),
libpcre2-8-0 (= 10.36-2),
libpcre3 (= 2:8.39-13),
libperl5.32 (= 5.32.1-3),
libpipeline1 (= 1.5.3-1),
libprocps8 (= 2:3.3.17-5),
libpsl5 (= 0.21.0-1.2),
librhash0 (= 1.4.1-1),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.27+dfsg-2.1),
libsasl2-modules-db (= 2.1.27+dfsg-2.1),
libseccomp2 (= 2.5.1-1+rpi1),
libselinux1 (= 3.1-3),
libsigsegv2 (= 2.13-1),
libsimde-dev (= 0.7.2-4),
libsmartcols1 (= 2.36.1-7),
libssh2-1 (= 1.9.0-2),
libssl1.1 (= 1.1.1k-1),
libstdc++-10-dev (= 10.2.1-6+rpi1),
libstdc++6 (= 10.2.1-6+rpi1),
libsub-override-perl (= 0.09-2),
libsystemd0 (= 247.3-1+rpi1),
libsz2 (= 1.0.4-1),
libtasn1-6 (= 4.16.0-2),
libtinfo6 (= 6.2+20201114-2),
libtirpc-common (= 1.3.1-1),
libtirpc-dev (= 1.3.1-1),
libtirpc3 (= 1.3.1-1),
libtool (= 2.4.6-15),
libubsan1 (= 10.2.1-6+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 247.3-1+rpi1),
libunistring2 (= 0.9.10-4),
libuuid1 (= 2.36.1-7),
libuv1 (= 1.40.0-1),
libxml2 (= 2.9.10+dfsg-6.3),
libzstd1 (= 1.4.8+dfsg-2.1),
linux-libc-dev (= 5.10.24-1+rpi1),
login (= 1:4.8.1-1),
lsb-base (= 11.1.0+rpi1),
m4 (= 1.4.18-5),
make (= 4.3-4),
man-db (= 2.9.4-2),
mawk (= 1.3.4.20200120-2),
ncurses-base (= 6.2+20201114-2),
ncurses-bin (= 6.2+20201114-2),
patch (= 2.7.6-7),
perl (= 5.32.1-3),
perl-base (= 5.32.1-3),
perl-modules-5.32 (= 5.32.1-3),
po-debconf (= 1.0.21+nmu1),
procps (= 2:3.3.17-5),
sed (= 4.7-1),
sensible-utils (= 0.0.14),
sysvinit-utils (= 2.96-6),
tar (= 1.34+dfsg-1),
util-linux (= 2.36.1-7),
xz-utils (= 5.2.5-2),
zlib1g (= 1:1.2.11.dfsg-2),
zlib1g-dev (= 1:1.2.11.dfsg-2)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1617477023"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
scrappie-dbgsym_1.4.2-7_armhf.deb
---------------------------------
new Debian package, version 2.0.
size 192368 bytes: control archive=536 bytes.
374 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: scrappie-dbgsym
Source: scrappie
Version: 1.4.2-7
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 225
Depends: scrappie (= 1.4.2-7)
Section: debug
Priority: optional
Description: debug symbols for scrappie
Build-Ids: d392abc628ff8463c893c16a2347a8739ecc6e1d
drwxr-xr-x root/root 0 2021-04-03 19:10 ./
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/lib/
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/lib/debug/.build-id/d3/
-rw-r--r-- root/root 219880 2021-04-03 19:10 ./usr/lib/debug/.build-id/d3/92abc628ff8463c893c16a2347a8739ecc6e1d.debug
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/share/
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-04-03 19:10 ./usr/share/doc/scrappie-dbgsym -> scrappie
scrappie_1.4.2-7_armhf.deb
--------------------------
new Debian package, version 2.0.
size 18336216 bytes: control archive=972 bytes.
808 bytes, 18 lines control
389 bytes, 6 lines md5sums
Package: scrappie
Version: 1.4.2-7
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 22036
Depends: libblas3 | libblas.so.3, libc6 (>= 2.27), libgomp1 (>= 6), libhdf5-103-1
Built-Using: simde (= 0.7.2-4)
Section: science
Priority: optional
Homepage: https://github.com/nanoporetech/scrappie
Description: basecaller for Nanopore sequencer
The Nanopore is a device for DNA/RNA sequencing that does
not require an amplification of the material. The polynucleotides
are threaded through a pore and while these pass through,
the change in the electrostatic potential allows one to
identify ("call") the actual base that resides in the pore.
Scrappie goes a step further and also attempts to describe
modifications to the nucleic acid.
drwxr-xr-x root/root 0 2021-04-03 19:10 ./
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/bin/
-rwxr-xr-x root/root 11263688 2021-04-03 19:10 ./usr/bin/scrappie
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/lib/
-rw-r--r-- root/root 11266322 2021-04-03 19:10 ./usr/lib/libscrappie.a
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/share/
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/share/doc/
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/share/doc/scrappie/
-rw-r--r-- root/root 781 2021-04-03 19:10 ./usr/share/doc/scrappie/changelog.Debian.gz
-rw-r--r-- root/root 18427 2021-02-03 15:35 ./usr/share/doc/scrappie/copyright
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/share/lintian/
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 219 2021-02-03 15:35 ./usr/share/lintian/overrides/scrappie
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/share/man/
drwxr-xr-x root/root 0 2021-04-03 19:10 ./usr/share/man/man1/
-rw-r--r-- root/root 861 2021-04-03 19:10 ./usr/share/man/man1/scrappie.1.gz
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| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build Type: any
Build-Space: 153572
Build-Time: 9633
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 361
Job: scrappie_1.4.2-7
Machine Architecture: armhf
Package: scrappie
Package-Time: 10032
Source-Version: 1.4.2-7
Space: 153572
Status: successful
Version: 1.4.2-7
--------------------------------------------------------------------------------
Finished at 2021-04-24T07:48:52Z
Build needed 02:47:12, 153572k disk space