scikit-fmm →
2022.08.15-4 →
armhf → 2023-09-17 23:15:27
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| scikit-fmm 2022.08.15-4 (armhf) Sun, 17 Sep 2023 23:02:32 +0000 |
+==============================================================================+
Package: scikit-fmm
Version: 2022.08.15-4
Source Version: 2022.08.15-4
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-7a6975ca-ff9c-4207-a310-ebf1c34058f6' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.6 MB]
Fetched 28.7 MB in 30s (964 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'scikit-fmm' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debian/scikit-fmm.git
Please use:
git clone https://salsa.debian.org/debian/scikit-fmm.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 416 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main scikit-fmm 2022.08.15-4 (dsc) [2025 B]
Get:2 http://172.17.4.1/private trixie-staging/main scikit-fmm 2022.08.15-4 (tar) [410 kB]
Get:3 http://172.17.4.1/private trixie-staging/main scikit-fmm 2022.08.15-4 (diff) [4004 B]
Fetched 416 kB in 0s (3078 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/scikit-fmm-jb8THn/scikit-fmm-2022.08.15' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/scikit-fmm-jb8THn' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-wbrnij/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-wbrnij/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-wbrnij/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ Packages [432 B]
Fetched 2108 B in 1s (2783 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase sensible-utils sgml-base
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 32 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (24.0 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12024 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, python3-numpy, cython3
Filtered Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, python3-numpy, cython3
dpkg-deb: building package 'sbuild-build-depends-scikit-fmm-dummy' in '/<<BUILDDIR>>/resolver-wbrnij/apt_archive/sbuild-build-depends-scikit-fmm-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-scikit-fmm-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ Sources [527 B]
Get:5 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ Packages [608 B]
Fetched 2468 B in 1s (3431 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install scikit-fmm build dependencies (apt-based resolver)
----------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libldap-common libpam-cap netbase sgml-base
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas3
libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libicu72 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1
libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types
po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils
python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources
python3-setuptools python3.11 python3.11-dev python3.11-minimal zlib1g
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc cython-doc dh-make flit
python3-build python3-installer python3-wheel gettext-doc libasprintf-dev
libgettextpo-dev groff libtool-doc gfortran | fortran95-compiler gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv gfortran python3-pytest python-setuptools-doc python3.11-venv
python3.11-doc binfmt-support
Recommended packages:
curl | wget | lynx libarchive-cpio-perl javascript-common libltdl-dev
libmail-sendmail-perl ca-certificates
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils cython3 debhelper
dh-autoreconf dh-python dh-strip-nondeterminism dwz file gettext
gettext-base groff-base intltool-debian libarchive-zip-perl libblas3
libdebhelper-perl libelf1 libexpat1 libexpat1-dev
libfile-stripnondeterminism-perl libgfortran5 libicu72 libjs-jquery
libjs-sphinxdoc libjs-underscore liblapack3 libmagic-mgc libmagic1
libpipeline1 libpython3-all-dev libpython3-dev libpython3-stdlib
libpython3.11 libpython3.11-dev libpython3.11-minimal libpython3.11-stdlib
libsub-override-perl libtool libuchardet0 libxml2 m4 man-db media-types
po-debconf python3 python3-all python3-all-dev python3-dev python3-distutils
python3-lib2to3 python3-minimal python3-numpy python3-pkg-resources
python3-setuptools python3.11 python3.11-dev python3.11-minimal
sbuild-build-depends-scikit-fmm-dummy zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 62 newly installed, 0 to remove and 31 not upgraded.
Need to get 38.2 MB of archives.
After this operation, 158 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-wbrnij/apt_archive ./ sbuild-build-depends-scikit-fmm-dummy 0.invalid.0 [896 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-minimal armhf 3.11.5-3 [800 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf zlib1g armhf 1:1.2.13.dfsg-3 [73.6 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf python3.11-minimal armhf 3.11.5-3 [1676 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf python3-minimal armhf 3.11.4-5 [26.2 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf media-types all 10.1.0 [26.9 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-stdlib armhf 3.11.5-3 [1675 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf python3.11 armhf 3.11.5-3 [582 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libpython3-stdlib armhf 3.11.4-5 [9200 B]
Get:11 http://172.17.4.1/private trixie-staging/main armhf python3 armhf 3.11.4-5 [26.2 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.22.4-10 [774 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.38.1-5 [78.5 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.44-3 [305 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.44-3 [95.3 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.44-3 [41.5 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-12 [156 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-3 [256 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf cython3 armhf 0.29.36-1 [1212 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-12 [1201 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf python3-lib2to3 all 3.11.5-1 [77.5 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf python3-distutils all 3.11.5-1 [131 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf dh-python all 6.20230825 [106 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libexpat1-dev armhf 2.5.0-1 [130 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libjs-sphinxdoc all 5.3.0-7 [131 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libpython3.11 armhf 3.11.5-3 [1660 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libpython3.11-dev armhf 3.11.5-3 [3370 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libpython3-dev armhf 3.11.4-5 [9432 B]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libpython3-all-dev armhf 3.11.4-5 [1068 B]
Get:57 http://172.17.4.1/private trixie-staging/main armhf python3-all armhf 3.11.4-5 [1060 B]
Get:58 http://172.17.4.1/private trixie-staging/main armhf python3.11-dev armhf 3.11.5-3 [623 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf python3-dev armhf 3.11.4-5 [26.2 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf python3-all-dev armhf 3.11.4-5 [1068 B]
Get:61 http://172.17.4.1/private trixie-staging/main armhf python3-pkg-resources all 68.1.2-1 [241 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf python3-numpy armhf 1:1.24.2-1 [3826 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf python3-setuptools all 68.1.2-1 [468 kB]
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Setting up media-types (10.1.0) ...
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Setting up libicu72:armhf (72.1-3) ...
Setting up bsdextrautils (2.38.1-5) ...
Setting up libmagic-mgc (1:5.44-3) ...
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Setting up libpython3.11-stdlib:armhf (3.11.5-3) ...
Setting up libdebhelper-perl (13.11.6) ...
Setting up libmagic1:armhf (1:5.44-3) ...
Setting up gettext-base (0.21-12) ...
Setting up m4 (1.4.19-3) ...
Setting up file (1:5.44-3) ...
Setting up autotools-dev (20220109.1) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libexpat1-dev:armhf (2.5.0-1) ...
Setting up autopoint (0.21-13) ...
Setting up libgfortran5:armhf (12.2.0-14+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-3) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up libpython3-stdlib:armhf (3.11.4-5) ...
Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up python3.11 (3.11.5-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up gettext (0.21-12) ...
Setting up libpython3.11:armhf (3.11.5-3) ...
Setting up libtool (2.4.7-7) ...
Setting up python3 (3.11.4-5) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libpython3.11-dev:armhf (3.11.5-3) ...
Setting up cython3 (0.29.36-1) ...
Setting up libjs-sphinxdoc (5.3.0-7) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-10) ...
Setting up python3-lib2to3 (3.11.5-1) ...
Setting up python3-pkg-resources (68.1.2-1) ...
Setting up python3-distutils (3.11.5-1) ...
Setting up dh-python (6.20230825) ...
Setting up libpython3-dev:armhf (3.11.4-5) ...
Setting up python3-setuptools (68.1.2-1) ...
Setting up python3.11-dev (3.11.5-3) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up python3-all (3.11.4-5) ...
Setting up man-db (2.11.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpython3-all-dev:armhf (3.11.4-5) ...
Setting up python3-dev (3.11.4-5) ...
Setting up python3-numpy (1:1.24.2-1) ...
Setting up python3-all-dev (3.11.4-5) ...
Setting up debhelper (13.11.6) ...
Setting up sbuild-build-depends-scikit-fmm-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.6.1 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_12.4+rpi1+deb12u1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 bsdextrautils_2.38.1-5 bsdutils_1:2.38.1-5 build-essential_12.9 bzip2_1.0.8-5+b2 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 cython3_0.29.36-1 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.6 debianutils_5.7-0.4 dh-autoreconf_20 dh-python_6.20230825 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-12 gettext-base_0.21-12 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-3 libacl1_2.3.1-3 libapt-pkg6.0_2.6.1 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.0.9-1 libbinutils_2.40-2+rpi2 libblas3_3.11.0-2 libblkid1_2.38.1-5 libboost-iostreams1.74.0_1.74.0+ds1-21 libbz2-1.0_1.0.8-5+b2 libc-bin_2.36-9+rpi1+deb12u1 libc-dev-bin_2.36-9+rpi1+deb12u1 libc6_2.36-9+rpi1+deb12u1 libc6-dev_2.36-9+rpi1+deb12u1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_12.2.0-14+rpi1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2+rpi2 libctf0_2.40-2+rpi2 libcwidget4_0.5.18-6 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdpkg-perl_1.21.22+rpi1 libelf1_0.188-2.1+rpi1 libexpat1_2.5.0-1 libexpat1-dev_2.5.0-1 libext2fs2_1.47.0-2 libfakeroot_1.31-1.2 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran5_12.2.0-14+rpi1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.9-2 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.46-1 libgssapi-krb5-2_1.20.1-2 libhogweed6_3.8.1-2 libicu72_72.1-3 libidn2-0_2.3.3-1+b2 libisl23_0.25-1 libjansson4_2.14-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libjs-sphinxdoc_5.3.0-7 libjs-underscore_1.13.4~dfsg+~1.11.4-3 libk5crypto3_1.20.1-2 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-2 libkrb5support0_1.20.1-2 libksba8_1.6.3-2 liblapack3_3.11.0-2 libldap-2.4-2_2.4.59+dfsg-1+b1 libldap-2.5-0_2.5.13+dfsg-5+rpi1 libldap-common_2.5.13+dfsg-5+rpi1 liblz4-1_1.9.4-1+rpi1+b1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmount1_2.38.1-5 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4-4 libnettle8_3.8.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-2 libpam-cap_1:2.66-4 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-7 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpython3-all-dev_3.11.4-5 libpython3-dev_3.11.4-5 libpython3-stdlib_3.11.4-5 libpython3.11_3.11.5-3 libpython3.11-dev_3.11.5-3 libpython3.11-minimal_3.11.5-3 libpython3.11-stdlib_3.11.5-3 libreadline8_8.2-1.3 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.4-1+b2 libsemanage-common_3.5-1 libsemanage2_3.4-1+b2 libsepol1_3.1-1 libsepol2_3.4-2.1 libsigc++-2.0-0v5_2.12.0-1 libsmartcols1_2.38.1-5 libsqlite3-0_3.40.1-2 libss2_1.47.0-2 libssl1.1_1.1.1o-1 libssl3_3.0.9-1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-override-perl_0.09-4 libsystemd0_252.12-1~deb12u1+rpi1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.4-4 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-7 libubsan1_12.2.0-14+rpi1 libuchardet0_0.0.7-1 libudev1_252.12-1~deb12u1+rpi1 libunistring2_1.0-2 libuuid1_2.38.1-5 libxapian30_1.4.22-1 libxml2_2.9.14+dfsg-1.3 libxxhash0_0.8.1-1 libzstd1_1.5.4+dfsg2-5 linux-libc-dev_6.1.38-1+rpi1 login_1:4.13+dfsg1-1 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20200120-3.1 media-types_10.1.0 mount_2.38.1-5 nano_7.2-1 ncurses-base_6.4+20230625-2 ncurses-bin_6.4-4 netbase_6.4 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 pinentry-curses_1.2.1-1 po-debconf_1.0.21+nmu1 python3_3.11.4-5 python3-all_3.11.4-5 python3-all-dev_3.11.4-5 python3-dev_3.11.4-5 python3-distutils_3.11.5-1 python3-lib2to3_3.11.5-1 python3-minimal_3.11.4-5 python3-numpy_1:1.24.2-1 python3-pkg-resources_68.1.2-1 python3-setuptools_68.1.2-1 python3.11_3.11.5-3 python3.11-dev_3.11.5-3 python3.11-minimal_3.11.5-3 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-scikit-fmm-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.06-4 tar_1.34+dfsg-1.2 tzdata_2023c-10 usrmerge_37 util-linux_2.38.1-5 util-linux-extra_2.38.1-5 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Tue May 16 15:15:55 2023 UTC
gpgv: using RSA key 1E0BAAD85C2232A1B3CE92EBB7047105830B9FA1
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./scikit-fmm_2022.08.15-4.dsc: no acceptable signature found
dpkg-source: info: extracting scikit-fmm in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking scikit-fmm_2022.08.15.orig.tar.gz
dpkg-source: info: unpacking scikit-fmm_2022.08.15-4.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-7a6975ca-ff9c-4207-a310-ebf1c34058f6
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package scikit-fmm
dpkg-buildpackage: info: source version 2022.08.15-4
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
dpkg-source: info: using options from scikit-fmm-2022.08.15/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
debian/rules clean
dh clean --with python3 --with numpy3 --buildsystem=pybuild
debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -f /<<PKGBUILDDIR>>/skfmm/pheap.cpp
dh_auto_clean
I: pybuild base:291: python3.11 setup.py clean
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'configuration'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/dist.py:508: InformationOnly: Normalizing '2022.08.15' to '2022.8.15'
self.metadata.version = self._normalize_version(
running clean
removing '/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build' (and everything under it)
'build/bdist.linux-armv7l' does not exist -- can't clean it
'build/scripts-3.11' does not exist -- can't clean it
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_autoreconf_clean -O--buildsystem=pybuild
dh_clean -O--buildsystem=pybuild
debian/rules binary-arch
dh binary-arch --with python3 --with numpy3 --buildsystem=pybuild
dh_update_autotools_config -a -O--buildsystem=pybuild
dh_autoreconf -a -O--buildsystem=pybuild
debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cython3 --cplus -3 /<<PKGBUILDDIR>>/skfmm/pheap.pyx
dh_auto_configure
I: pybuild base:291: python3.11 setup.py config
/usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:265: UserWarning: Unknown distribution option: 'configuration'
warnings.warn(msg)
/usr/lib/python3/dist-packages/setuptools/dist.py:508: InformationOnly: Normalizing '2022.08.15' to '2022.8.15'
self.metadata.version = self._normalize_version(
running config
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build -a -O--buildsystem=pybuild
I: pybuild base:291: /usr/bin/python3 setup.py build
/<<PKGBUILDDIR>>/setup.py:116: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
from numpy.distutils.core import setup
/usr/lib/python3/dist-packages/setuptools/dist.py:508: InformationOnly: Normalizing '2022.08.15' to '2022.8.15'
self.metadata.version = self._normalize_version(
running build
running config_cc
INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
INFO: build_src
INFO: building extension "skfmm.cfmm" sources
INFO: building extension "skfmm.pheap" sources
INFO: build_src: building npy-pkg config files
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build_py
creating /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm
copying skfmm/__init__.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm
copying skfmm/heap.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm
copying skfmm/pfmm.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm
copying skfmm/setup.py -> /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm
running build_ext
INFO: customize UnixCCompiler
INFO: customize UnixCCompiler using build_ext
INFO: CCompilerOpt.cc_test_cexpr[1089] : testing compiler expression defined(__ARM_ARCH_7__) || defined(__ARM_ARCH_7A__)
INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -I/usr/include/python3.11 -I/usr/include/python3.11 -Wsign-compare -g -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -g -fwrapv -O2 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating /tmp/tmp700py3vk/tmp
creating /tmp/tmp700py3vk/tmp/tmp700py3vk
INFO: compile options: '-I/usr/include/python3.11 -c'
WARN: CCompilerOpt.dist_test[630] : CCompilerOpt._dist_test_spawn[764] : Command (arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -I/usr/include/python3.11 -I/usr/include/python3.11 -Wsign-compare -g -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -g -fwrapv -O2 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.11 -c /tmp/tmp700py3vk/npy_dist_test_cexpr.c -o /tmp/tmp700py3vk/tmp/tmp700py3vk/npy_dist_test_cexpr.o -MMD -MF /tmp/tmp700py3vk/tmp/tmp700py3vk/npy_dist_test_cexpr.o.d) failed with exit status 1 output ->
/tmp/tmp700py3vk/npy_dist_test_cexpr.c:2:6: error: #error "unsupported expression"
2 | #error "unsupported expression"
| ^~~~~
WARN: CCompilerOpt.cc_test_cexpr[1100] : testing failed
WARN: CCompilerOpt.__init__[1016] : unable to detect CPU architecture which lead to disable the optimization. check dist_info:<<
('linux-armv7l', 'arm-linux-gnueabihf-gcc', '-Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -I/usr/include/python3.11 -I/usr/include/python3.11 -Wsign-compare -g -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -g -fwrapv -O2 -Wall -Wdate-time -D_FORTIFY_SOURCE=2')
>>
INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-march=native)
INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -I/usr/include/python3.11 -I/usr/include/python3.11 -Wsign-compare -g -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -g -fwrapv -O2 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating /tmp/tmp700py3vk/usr
creating /tmp/tmp700py3vk/usr/lib
creating /tmp/tmp700py3vk/usr/lib/python3
creating /tmp/tmp700py3vk/usr/lib/python3/dist-packages
creating /tmp/tmp700py3vk/usr/lib/python3/dist-packages/numpy
creating /tmp/tmp700py3vk/usr/lib/python3/dist-packages/numpy/distutils
creating /tmp/tmp700py3vk/usr/lib/python3/dist-packages/numpy/distutils/checks
INFO: compile options: '-I/usr/include/python3.11 -c'
extra options: '-march=native'
INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-O3)
INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -I/usr/include/python3.11 -I/usr/include/python3.11 -Wsign-compare -g -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -g -fwrapv -O2 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
INFO: compile options: '-I/usr/include/python3.11 -c'
extra options: '-O3'
INFO: CCompilerOpt.cc_test_flags[1077] : testing flags (-Werror)
INFO: C compiler: arm-linux-gnueabihf-gcc -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -I/usr/include/python3.11 -I/usr/include/python3.11 -Wsign-compare -g -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -g -fwrapv -O2 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
INFO: compile options: '-I/usr/include/python3.11 -c'
extra options: '-Werror'
INFO: CCompilerOpt.__init__[1786] : check requested baseline
INFO: CCompilerOpt.__init__[1795] : check requested dispatch-able features
INFO: CCompilerOpt.__init__[1811] : initialize targets groups
INFO: CCompilerOpt.__init__[1813] : parse target group simd_test
INFO: CCompilerOpt._parse_target_tokens[2024] : skip targets (NEON FMA4 SSE42 VSX2 VXE2 VX XOP AVX512_SKX VSX4 ASIMD VXE VSX3 VSX AVX512F SSE2 (FMA3 AVX2)) not part of baseline or dispatch-able features
INFO: CCompilerOpt.generate_dispatch_header[2357] : generate CPU dispatch header: (build/src.linux-armv7l-3.11/numpy/distutils/include/npy_cpu_dispatch_config.h)
WARN: CCompilerOpt.generate_dispatch_header[2366] : dispatch header dir build/src.linux-armv7l-3.11/numpy/distutils/include does not exist, creating it
INFO: customize UnixCCompiler
INFO: customize UnixCCompiler using build_ext
INFO: building 'skfmm.cfmm' extension
INFO: compiling C++ sources
INFO: C compiler: arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -I/usr/include/python3.11 -I/usr/include/python3.11 -Wsign-compare -g -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -g -fwrapv -O2 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
creating build/temp.linux-armv7l-cpython-311/skfmm
INFO: compile options: '-Iskfmm -I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -I/usr/include/python3.11 -c'
INFO: arm-linux-gnueabihf-g++: skfmm/fmm.cpp
INFO: arm-linux-gnueabihf-g++: skfmm/heap.cpp
INFO: arm-linux-gnueabihf-g++: skfmm/base_marcher.cpp
INFO: arm-linux-gnueabihf-g++: skfmm/distance_marcher.cpp
In file included from /usr/include/python3.11/numpy/ndarraytypes.h:1940,
from /usr/include/python3.11/numpy/ndarrayobject.h:12,
from /usr/include/python3.11/numpy/noprefix.h:9,
from skfmm/fmm.cpp:5:
/usr/include/python3.11/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp]
17 | #warning "Using deprecated NumPy API, disable it with " \
| ^~~~~~~
INFO: arm-linux-gnueabihf-g++: skfmm/travel_time_marcher.cpp
INFO: arm-linux-gnueabihf-g++: skfmm/extension_velocity_marcher.cpp
skfmm/travel_time_marcher.cpp: In member function 'virtual double travelTimeMarcher::updatePointOrderTwo(int, std::set<int>)':
skfmm/travel_time_marcher.cpp:87:25: warning: comparison of integer expressions of different signedness: 'std::set<int>::size_type' {aka 'unsigned int'} and 'int' [-Wsign-compare]
87 | if(avoid_dim.size() == dim_) return std::numeric_limits<double>::infinity(); //end of the recursion, use inf so that it is discarded selecting the minimum
| ~~~~~~~~~~~~~~~~~^~~~~~~
In file included from /usr/include/c++/12/vector:70,
from skfmm/travel_time_marcher.cpp:7:
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'virtual double travelTimeMarcher::updatePointOrderTwo(int, std::set<int>)' at skfmm/travel_time_marcher.cpp:94:23:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
INFO: arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -L/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ldl -lm -I/usr/include/python3.11 -I/usr/include/python3.11 -Wsign-compare -g -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -g -fwrapv -O2 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/skfmm/fmm.o build/temp.linux-armv7l-cpython-311/skfmm/heap.o build/temp.linux-armv7l-cpython-311/skfmm/base_marcher.o build/temp.linux-armv7l-cpython-311/skfmm/distance_marcher.o build/temp.linux-armv7l-cpython-311/skfmm/travel_time_marcher.o build/temp.linux-armv7l-cpython-311/skfmm/extension_velocity_marcher.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm/cfmm.cpython-311-arm-linux-gnueabihf.so
INFO: building 'skfmm.pheap' extension
INFO: compiling C++ sources
INFO: C compiler: arm-linux-gnueabihf-g++ -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -I/usr/include/python3.11 -I/usr/include/python3.11 -Wsign-compare -g -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -g -fwrapv -O2 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC
INFO: compile options: '-I/usr/lib/python3/dist-packages/numpy/core/include -Ibuild/src.linux-armv7l-3.11/numpy/distutils/include -I/usr/include/python3.11 -c'
INFO: arm-linux-gnueabihf-g++: skfmm/pheap.cpp
INFO: arm-linux-gnueabihf-g++: skfmm/heap.cpp
INFO: arm-linux-gnueabihf-g++ -shared -Wl,-O1 -Wl,-Bsymbolic-functions -g -fwrapv -O2 -L/usr/lib/python3.11/config-3.11-arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -ldl -lm -I/usr/include/python3.11 -I/usr/include/python3.11 -Wsign-compare -g -fstack-protector-strong -Wformat -Werror=format-security -DNDEBUG -g -fwrapv -O2 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armv7l-cpython-311/skfmm/pheap.o build/temp.linux-armv7l-cpython-311/skfmm/heap.o -L/usr/lib/arm-linux-gnueabihf -o /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm/pheap.cpython-311-arm-linux-gnueabihf.so
INFO:
########### EXT COMPILER OPTIMIZATION ###########
INFO: Platform :
Architecture: unsupported
Compiler : gcc
CPU baseline :
Requested : optimization disabled
Enabled : none
Flags : none
Extra checks: none
Requested : optimization disabled
CPU dispatch :
Enabled : none
Generated : none
INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /<<PKGBUILDDIR>>/build/temp.linux-armv7l-cpython-311/ccompiler_opt_cache_ext.py
dh_auto_test -a -O--buildsystem=pybuild
I: pybuild base:291: cd /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build; python3.11 -m unittest discover -v
----------------------------------------------------------------------
Ran 0 tests in 0.000s
OK
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=pybuild
dh_prep -a -O--buildsystem=pybuild
dh_auto_install --destdir=debian/python3-scikit-fmm/ -a -O--buildsystem=pybuild
I: pybuild base:291: /usr/bin/python3 setup.py install --root /<<PKGBUILDDIR>>/debian/python3-scikit-fmm
/<<PKGBUILDDIR>>/setup.py:116: DeprecationWarning:
`numpy.distutils` is deprecated since NumPy 1.23.0, as a result
of the deprecation of `distutils` itself. It will be removed for
Python >= 3.12. For older Python versions it will remain present.
It is recommended to use `setuptools < 60.0` for those Python versions.
For more details, see:
https://numpy.org/devdocs/reference/distutils_status_migration.html
from numpy.distutils.core import setup
/usr/lib/python3/dist-packages/setuptools/dist.py:508: InformationOnly: Normalizing '2022.08.15' to '2022.8.15'
self.metadata.version = self._normalize_version(
Note: if you need to uninstall you should `pip install scikit-fmm` instead of using `setup.py install`
running install
/usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated.
!!
********************************************************************************
Please avoid running ``setup.py`` directly.
Instead, use pypa/build, pypa/installer or other
standards-based tools.
See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details.
********************************************************************************
!!
self.initialize_options()
running build
running config_cc
INFO: unifing config_cc, config, build_clib, build_ext, build commands --compiler options
running config_fc
INFO: unifing config_fc, config, build_clib, build_ext, build commands --fcompiler options
running build_src
INFO: build_src
INFO: building extension "skfmm.cfmm" sources
INFO: building extension "skfmm.pheap" sources
INFO: build_src: building npy-pkg config files
running build_py
running build_ext
INFO: customize UnixCCompiler
INFO: customize UnixCCompiler using build_ext
INFO: CCompilerOpt.__init__[813] : load cache from file -> /<<PKGBUILDDIR>>/build/temp.linux-armv7l-cpython-311/ccompiler_opt_cache_ext.py
INFO: CCompilerOpt.__init__[824] : hit the file cache
INFO: customize UnixCCompiler
INFO: customize UnixCCompiler using build_ext
running install_lib
creating /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr
creating /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib
creating /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11
creating /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages
creating /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm/__init__.py -> /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm/heap.py -> /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm/pfmm.py -> /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm/setup.py -> /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm/cfmm.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm/pheap.cpython-311-arm-linux-gnueabihf.so -> /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm
creating /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm/__pycache__/__init__.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm/__pycache__/pfmm.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm/__pycache__
copying /<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_scikit-fmm/build/skfmm/__pycache__/heap.cpython-311.pyc -> /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm/__pycache__
byte-compiling /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm/__init__.py to __init__.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm/heap.py to heap.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm/pfmm.py to pfmm.cpython-311.pyc
byte-compiling /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/skfmm/setup.py to setup.cpython-311.pyc
running install_egg_info
running egg_info
creating scikit_fmm.egg-info
writing scikit_fmm.egg-info/PKG-INFO
writing dependency_links to scikit_fmm.egg-info/dependency_links.txt
writing requirements to scikit_fmm.egg-info/requires.txt
writing top-level names to scikit_fmm.egg-info/top_level.txt
writing manifest file 'scikit_fmm.egg-info/SOURCES.txt'
/usr/lib/python3/dist-packages/setuptools/command/sdist.py:126: SetuptoolsDeprecationWarning: `build_py` command does not inherit from setuptools' `build_py`.
!!
********************************************************************************
Custom 'build_py' does not implement 'get_data_files_without_manifest'.
Please extend command classes from setuptools instead of distutils.
See https://peps.python.org/pep-0632/ for details.
********************************************************************************
!!
self._add_data_files(self._safe_data_files(build_py))
reading manifest file 'scikit_fmm.egg-info/SOURCES.txt'
reading manifest template 'MANIFEST.in'
warning: no files found matching 'README.txt'
adding license file 'LICENSE.txt'
writing manifest file 'scikit_fmm.egg-info/SOURCES.txt'
Copying scikit_fmm.egg-info to /<<PKGBUILDDIR>>/debian/python3-scikit-fmm/usr/lib/python3.11/dist-packages/scikit_fmm-2022.8.15.egg-info
Skipping SOURCES.txt
running install_scripts
running install_clib
INFO: customize UnixCCompiler
INFO:
########### EXT COMPILER OPTIMIZATION ###########
INFO: Platform :
Architecture: unsupported
Compiler : gcc
CPU baseline :
Requested : optimization disabled
Enabled : none
Flags : none
Extra checks: none
Requested : optimization disabled
CPU dispatch :
Enabled : none
Generated : none
INFO: CCompilerOpt.cache_flush[857] : write cache to path -> /<<PKGBUILDDIR>>/build/temp.linux-armv7l-cpython-311/ccompiler_opt_cache_ext.py
dh_installdocs -a -O--buildsystem=pybuild
dh_installchangelogs -a -O--buildsystem=pybuild
dh_python3 -a -O--buildsystem=pybuild
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dpkg-deb: building package 'python3-scikit-fmm-dbgsym' in '../python3-scikit-fmm-dbgsym_2022.08.15-4_armhf.deb'.
dpkg-deb: building package 'python3-scikit-fmm' in '../python3-scikit-fmm_2022.08.15-4_armhf.deb'.
dpkg-genbuildinfo --build=any -O../scikit-fmm_2022.08.15-4_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../scikit-fmm_2022.08.15-4_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-source: info: using options from scikit-fmm-2022.08.15/debian/source/options: --extend-diff-ignore=^[^/]*[.]egg-info/
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-09-17T23:15:20Z
Finished
--------
I: Built successfully
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| Changes |
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scikit-fmm_2022.08.15-4_armhf.changes:
--------------------------------------
Format: 1.8
Date: Tue, 16 May 2023 09:08:40 -0600
Source: scikit-fmm
Binary: python3-scikit-fmm python3-scikit-fmm-dbgsym
Architecture: armhf
Version: 2022.08.15-4
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Bdale Garbee <bdale@gag.com>
Description:
python3-scikit-fmm - fast marching method extension (Python 3)
Closes: 1035239
Changes:
scikit-fmm (2022.08.15-4) unstable; urgency=medium
.
[Nilesh Patra]
* Add autopkgtests (Closes: #1035239)
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| Package contents |
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python3-scikit-fmm-dbgsym_2022.08.15-4_armhf.deb
------------------------------------------------
new Debian package, version 2.0.
size 142192 bytes: control archive=636 bytes.
413 bytes, 12 lines control
310 bytes, 3 lines md5sums
Package: python3-scikit-fmm-dbgsym
Source: scikit-fmm
Version: 2022.08.15-4
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Bdale Garbee <bdale@gag.com>
Installed-Size: 171
Depends: python3-scikit-fmm (= 2022.08.15-4)
Section: debug
Priority: optional
Description: debug symbols for python3-scikit-fmm
Build-Ids: f10af62d8d9659e735d86ec6cbff907f7badf569 f4c5e3d8f8690584a95ddee25650846ce68550f2
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lrwxrwxrwx root/root 0 2023-05-16 15:08 ./usr/share/doc/python3-scikit-fmm-dbgsym -> python3-scikit-fmm
python3-scikit-fmm_2022.08.15-4_armhf.deb
-----------------------------------------
new Debian package, version 2.0.
size 42696 bytes: control archive=1700 bytes.
1231 bytes, 27 lines control
1215 bytes, 13 lines md5sums
283 bytes, 12 lines * postinst #!/bin/sh
396 bytes, 12 lines * prerm #!/bin/sh
Package: python3-scikit-fmm
Source: scikit-fmm
Version: 2022.08.15-4
Architecture: armhf
Maintainer: Bdale Garbee <bdale@gag.com>
Installed-Size: 139
Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2), python3 (<< 3.12), python3 (>= 3.11~), python3-numpy (>= 1:1.22.0), python3-numpy-abi9, python3:any
Section: python
Priority: optional
Homepage: https://github.com/scikit-fmm/scikit-fmm/
Description: fast marching method extension (Python 3)
This module implements the fast marching method, used to model the
evolution of boundaries and interfaces in a variety of application areas.
More specifically, the fast marching method is a numerical technique for
finding approximate solutions to boundary value problems of the Eikonal
equation:
.
F(x) | grad T(x) | = 1
.
Typically, such a problem describes the evolution of a closed curve as
a function of time T with speed F(x)>0 in the normal direction at a
point x on the curve. The speed function is specified, and the time at
which the contour crosses a point x is obtained by solving the
equation.
.
scikit-fmm provides functions to calculate the signed distance and travel
time to an interface described by the zero contour of the input array phi.
drwxr-xr-x root/root 0 2023-05-16 15:08 ./
drwxr-xr-x root/root 0 2023-05-16 15:08 ./usr/
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-rw-r--r-- root/root 2559 2023-05-16 15:08 ./usr/share/doc/python3-scikit-fmm/copyright
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
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Build Architecture: armhf
Build-Space: 2784
Build-Time: 111
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 601
Job: scikit-fmm_2022.08.15-4
Machine Architecture: armhf
Package: scikit-fmm
Package-Time: 768
Source-Version: 2022.08.15-4
Space: 2784
Status: successful
Version: 2022.08.15-4
--------------------------------------------------------------------------------
Finished at 2023-09-17T23:15:20Z
Build needed 00:12:48, 2784k disc space