r-cran-rstanarm →
2.19.3-1+b1 →
armhf → 2020-05-31 19:39:05
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| r-cran-rstanarm 2.19.3-1+b1 (armhf) Sun, 31 May 2020 14:19:39 +0000 |
+==============================================================================+
Package: r-cran-rstanarm
Version: 2.19.3-1+b1
Source Version: 2.19.3-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-1794d5bc-17d5-4268-bb7a-60d9e332c84a' with '<<CHROOT>>'
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Check APT
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Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-rstanarm' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-rstanarm.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-rstanarm.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3541 kB of source archives.
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I: NOTICE: Log filtering will replace 'build/r-cran-rstanarm-iBx6d9' with '<<BUILDDIR>>'
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| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-8TOfqi/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
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gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
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Install core build dependencies (apt-based resolver)
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The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
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Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
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Arch check ok (armhf included in any)
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| Install package build dependencies |
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Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-rcpp (>= 0.12.0), r-cran-bayesplot (>= 1.7.0), r-cran-ggplot2 (>= 2.2.1), r-cran-lme4, r-cran-loo (>= 2.1.0), r-cran-matrix (>= 1.2-13), r-cran-nlme, r-cran-rstan (>= 2.19.1), r-cran-rstantools (>= 2.0.0), r-cran-shinystan, r-cran-survival (>= 2.40.1), r-cran-rcppparallel, r-cran-stanheaders (>= 2.19.0), r-cran-bh, r-cran-rcppeigen (>= 0.3.3.3.0)
Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-rcpp (>= 0.12.0), r-cran-bayesplot (>= 1.7.0), r-cran-ggplot2 (>= 2.2.1), r-cran-lme4, r-cran-loo (>= 2.1.0), r-cran-matrix (>= 1.2-13), r-cran-nlme, r-cran-rstan (>= 2.19.1), r-cran-rstantools (>= 2.0.0), r-cran-shinystan, r-cran-survival (>= 2.40.1), r-cran-rcppparallel, r-cran-stanheaders (>= 2.19.0), r-cran-bh, r-cran-rcppeigen (>= 0.3.3.3.0)
dpkg-deb: building package 'sbuild-build-depends-r-cran-rstanarm-dummy' in '/<<BUILDDIR>>/resolver-8TOfqi/apt_archive/sbuild-build-depends-r-cran-rstanarm-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-rstanarm-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
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Install r-cran-rstanarm build dependencies (apt-based resolver)
---------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cpp-9
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome
fonts-glewlwyd fonts-glyphicons-halflings g++-9 gcc-10-base gcc-9 gcc-9-base
gettext gettext-base gfortran gfortran-9 groff-base icu-devtools
intltool-debian libarchive-zip-perl libasan5 libatomic1 libblas-dev libblas3
libboost-dev libboost1.67-dev libbrotli1 libbsd0 libbz2-dev libcairo2
libcc1-0 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-9-dev libgcc-s1 libgfortran-9-dev
libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libgssapi-krb5-2
libharfbuzz0b libice6 libicu-dev libicu63 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap libjs-d3 libjs-es5-shim
libjs-highlight.js libjs-jquery libjs-jquery-datatables
libjs-jquery-datatables-extensions libjs-jquery-selectize.js libjs-jquery-ui
libjs-json libjs-microplugin.js libjs-sifter.js
libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1
libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libnlopt0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libssl1.1 libstdc++-9-dev libstdc++6
libsub-override-perl libswitch-perl libtbb-dev libtbb2 libtcl8.6
libthai-data libthai0 libtiff5 libtinfo5 libtk8.6 libtool libubsan1
libuchardet0 libuv1 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db node-html5shiv node-jquery
node-normalize.css openssl pkg-config po-debconf r-base-core r-base-dev
r-cran-askpass r-cran-assertthat r-cran-backports r-cran-base64enc
r-cran-bayesplot r-cran-bh r-cran-boot r-cran-callr r-cran-checkmate
r-cran-cli r-cran-colorspace r-cran-colourpicker r-cran-crayon
r-cran-crosstalk r-cran-curl r-cran-desc r-cran-digest r-cran-dplyr
r-cran-dt r-cran-dygraphs r-cran-ellipsis r-cran-evaluate r-cran-fansi
r-cran-farver r-cran-fastmap r-cran-ggplot2 r-cran-ggridges r-cran-glue
r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-htmltools
r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-inline r-cran-isoband
r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval
r-cran-lifecycle r-cran-littler r-cran-lme4 r-cran-loo r-cran-magrittr
r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
r-cran-mime r-cran-miniui r-cran-minqa r-cran-munsell r-cran-nlme
r-cran-nloptr r-cran-openssl r-cran-packrat r-cran-pillar r-cran-pkgbuild
r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr
r-cran-praise r-cran-prettyunits r-cran-processx r-cran-promises r-cran-ps
r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen
r-cran-rcppparallel r-cran-reshape2 r-cran-rlang r-cran-rprojroot
r-cran-rsconnect r-cran-rstan r-cran-rstantools r-cran-rstudioapi
r-cran-scales r-cran-shiny r-cran-shinyjs r-cran-shinystan
r-cran-shinythemes r-cran-sourcetools r-cran-stanheaders r-cran-statmod
r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat
r-cran-threejs r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs
r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-xts
r-cran-yaml r-cran-zoo sensible-utils ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-9-locales debtags dh-make gcc-9-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-9-doc libcoarrays-dev groff
liblapack-doc libboost-doc libboost1.67-doc libboost-atomic1.67-dev
libboost-chrono1.67-dev libboost-container1.67-dev libboost-context1.67-dev
libboost-contract1.67-dev libboost-coroutine1.67-dev
libboost-date-time1.67-dev libboost-exception1.67-dev libboost-fiber1.67-dev
libboost-filesystem1.67-dev libboost-graph1.67-dev
libboost-graph-parallel1.67-dev libboost-iostreams1.67-dev
libboost-locale1.67-dev libboost-log1.67-dev libboost-math1.67-dev
libboost-mpi1.67-dev libboost-mpi-python1.67-dev libboost-numpy1.67-dev
libboost-program-options1.67-dev libboost-python1.67-dev
libboost-random1.67-dev libboost-regex1.67-dev
libboost-serialization1.67-dev libboost-signals1.67-dev
libboost-stacktrace1.67-dev libboost-system1.67-dev libboost-test1.67-dev
libboost-thread1.67-dev libboost-timer1.67-dev libboost-type-erasure1.67-dev
libboost-wave1.67-dev libboost1.67-tools-dev libmpfrc++-dev libntl-dev
krb5-doc krb5-user icu-doc libjs-jquery-ui-docs liblzma-doc ncurses-doc
readline-doc libstdc++-9-doc libtbb-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
m4-doc apparmor less www-browser nodejs libmail-box-perl elpa-ess r-doc-info
| r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-cran-covr r-cran-knitr r-cran-rmarkdown r-cran-devtools r-cran-tinytest
r-cran-prettycode r-cran-kernsmooth r-cran-kernlab r-cran-mvtnorm r-cran-vcd
r-cran-png r-cran-jpeg r-cran-viridis r-cran-dbi r-cran-dbplyr
r-cran-lubridate r-cran-rmysql r-cran-rpostgresql r-cran-broom r-cran-readr
r-cran-unitizer r-cran-hmisc r-cran-maps r-cran-maptools r-cran-multcomp
r-cran-quantreg r-cran-rpart r-cran-sf r-cran-svglite r-cran-patchwork
r-cran-forcats r-cran-rsqlite r-cran-r.utils r-cran-ape r-bioc-graph
r-cran-rgl r-cran-magick r-cran-httr r-cran-getopt r-cran-brms
r-cran-rstanarm r-cran-spdep r-cran-rcurl r-cran-bitops r-cran-doparallel
r-cran-foreach r-cran-iterators r-cran-itertools r-cran-mockr r-cran-plumber
r-cran-reticulate r-cran-roxygen2 r-cran-dichromat r-cran-cairo r-cran-v8
r-cran-usethis r-cran-bit64 r-cran-blob r-cran-hms r-cran-tidyr
r-cran-zeallot r-cran-tinytex r-cran-remotes r-cran-plm r-cran-timedate
r-cran-chron r-cran-runit
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs javascript-common krb5-locales libgpm2
libpng-tools publicsuffix libltdl-dev libmail-sendmail-perl r-recommended
r-doc-html r-cran-vdiffr r-cran-rstanarm r-cran-hexbin r-cran-cliapp
r-cran-fastmatch r-cran-data.table r-cran-mockery r-cran-webutils
r-cran-rsqlite r-cran-hms r-cran-bit64 r-cran-knitr r-cran-rmarkdown
r-cran-sp r-cran-mapproj r-cran-runit r-cran-sodium r-cran-lubridate
r-cran-domc r-cran-abind r-cran-codetools r-cran-future r-cran-usethis
r-cran-coda r-cran-xml2 r-cran-mockr r-cran-generics r-cran-dbi
r-cran-testit r-cran-tseries r-cran-timeseries r-cran-fts
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following packages will be REMOVED:
libgcc1*
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-font-awesome
fonts-glewlwyd fonts-glyphicons-halflings gettext gettext-base gfortran
gfortran-9 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-dev libblas3 libboost-dev libboost1.67-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1
libexpat1 libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-9-dev libgfortran5 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu63
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libjs-bootstrap
libjs-d3 libjs-es5-shim libjs-highlight.js libjs-jquery
libjs-jquery-datatables libjs-jquery-datatables-extensions
libjs-jquery-selectize.js libjs-jquery-ui libjs-json libjs-microplugin.js
libjs-sifter.js libjs-twitter-bootstrap-datepicker libk5crypto3 libkeyutils1
libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev libmagic-mgc
libmagic1 libncurses-dev libncurses5-dev libncurses6 libnghttp2-14 libnlopt0
libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils
libpaper1 libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix2 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libssl1.1 libsub-override-perl libswitch-perl
libtbb-dev libtbb2 libtcl8.6 libthai-data libthai0 libtiff5 libtinfo5
libtk8.6 libtool libuchardet0 libuv1 libwebp6 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db node-html5shiv
node-jquery node-normalize.css openssl pkg-config po-debconf r-base-core
r-base-dev r-cran-askpass r-cran-assertthat r-cran-backports
r-cran-base64enc r-cran-bayesplot r-cran-bh r-cran-boot r-cran-callr
r-cran-checkmate r-cran-cli r-cran-colorspace r-cran-colourpicker
r-cran-crayon r-cran-crosstalk r-cran-curl r-cran-desc r-cran-digest
r-cran-dplyr r-cran-dt r-cran-dygraphs r-cran-ellipsis r-cran-evaluate
r-cran-fansi r-cran-farver r-cran-fastmap r-cran-ggplot2 r-cran-ggridges
r-cran-glue r-cran-gridextra r-cran-gtable r-cran-gtools r-cran-htmltools
r-cran-htmlwidgets r-cran-httpuv r-cran-igraph r-cran-inline r-cran-isoband
r-cran-jsonlite r-cran-labeling r-cran-later r-cran-lattice r-cran-lazyeval
r-cran-lifecycle r-cran-littler r-cran-lme4 r-cran-loo r-cran-magrittr
r-cran-markdown r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-mgcv
r-cran-mime r-cran-miniui r-cran-minqa r-cran-munsell r-cran-nlme
r-cran-nloptr r-cran-openssl r-cran-packrat r-cran-pillar r-cran-pkgbuild
r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-plogr r-cran-plyr
r-cran-praise r-cran-prettyunits r-cran-processx r-cran-promises r-cran-ps
r-cran-purrr r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp r-cran-rcppeigen
r-cran-rcppparallel r-cran-reshape2 r-cran-rlang r-cran-rprojroot
r-cran-rsconnect r-cran-rstan r-cran-rstantools r-cran-rstudioapi
r-cran-scales r-cran-shiny r-cran-shinyjs r-cran-shinystan
r-cran-shinythemes r-cran-sourcetools r-cran-stanheaders r-cran-statmod
r-cran-stringi r-cran-stringr r-cran-survival r-cran-sys r-cran-testthat
r-cran-threejs r-cran-tibble r-cran-tidyselect r-cran-utf8 r-cran-vctrs
r-cran-viridislite r-cran-withr r-cran-xfun r-cran-xtable r-cran-xts
r-cran-yaml r-cran-zoo sbuild-build-depends-r-cran-rstanarm-dummy
sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-9 g++-9 gcc-10-base gcc-9 gcc-9-base libasan5 libatomic1 libcc1-0
libgcc-9-dev libgcc-s1 libgomp1 libstdc++-9-dev libstdc++6 libubsan1
14 upgraded, 268 newly installed, 1 to remove and 16 not upgraded.
Need to get 211 MB of archives.
After this operation, 563 MB of additional disk space will be used.
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Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.2-1 [318 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libatomic1 armhf 10.1.0-2+rpi1 [8172 B]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf libubsan1 armhf 10.1.0-2+rpi1 [115 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libgomp1 armhf 10.1.0-2+rpi1 [82.9 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf gcc-10-base armhf 10.1.0-2+rpi1 [197 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf libgcc-s1 armhf 10.1.0-2+rpi1 [36.1 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf libcc1-0 armhf 10.1.0-2+rpi1 [31.7 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf libstdc++6 armhf 10.1.0-2+rpi1 [408 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-5 [783 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.1-1 [1262 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf node-normalize.css all 8.0.1-3 [12.5 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf g++-9 armhf 9.3.0-13+rpi1 [8225 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf gcc-9 armhf 9.3.0-13+rpi1 [7731 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf cpp-9 armhf 9.3.0-13+rpi1 [7464 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf libasan5 armhf 9.3.0-13+rpi1 [348 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf libstdc++-9-dev armhf 9.3.0-13+rpi1 [1713 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf libgcc-9-dev armhf 9.3.0-13+rpi1 [639 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf gcc-9-base armhf 9.3.0-13+rpi1 [197 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-5 [262 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-5 [113 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-5 [67.0 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0042 [73.9 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.2-1 [775 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1g-1 [1272 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1g-1 [811 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-14 [513 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 13.1 [187 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.8.1-1 [25.2 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.8.1-1 [14.9 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.64.2-1 [1158 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-3 [7987 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.10+dfsg-5 [592 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 13.1 [1012 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-25 [152 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-2 [74.6 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-2 [108 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.14-2 [135 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.9-2 [298 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.9-2 [692 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.14-2 [110 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.14-2 [101 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6.1 [255 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-7+rpi1 [61.5 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-7+rpi1 [112 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-7+rpi1 [318 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-7+rpi1 [135 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.21.0-1 [53.9 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.68.0-1 [286 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 10.1.0-2+rpi1 [232 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-2 [1602 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.4-1+rpi1 [1308 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b2 [36.4 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.44.7-4 [165 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.44.7-4 [52.6 kB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.44.7-4 [44.9 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [886 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.10-1 [678 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 4.0.0-3 [24.6 MB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.3.0-13+rpi1 [278 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.3.0-13+rpi1 [8108 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:9.2.1-3.1+rpi1 [1440 B]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-2 [113 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-2 [2981 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.2-1 [79.5 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.2-1 [284 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.2-1 [932 B]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.0-4 [116 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.34-7 [181 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.34-7 [44.7 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.34-7 [614 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-2 [276 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-2 [27.7 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-3 [163 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-3 [8860 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 4.0.0-3 [4480 B]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20200314 [39.1 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf fonts-font-awesome all 5.0.10+really4.7.0~dfsg-1 [515 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf fonts-glewlwyd all 1.4.9-3 [403 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB]
Get:151 http://172.17.0.1/private bullseye-staging/main armhf libboost1.67-dev armhf 1.67.0-18 [8389 kB]
Get:152 http://172.17.0.1/private bullseye-staging/main armhf libboost-dev armhf 1.67.0.2+b12 [4464 B]
Get:153 http://172.17.0.1/private bullseye-staging/main armhf libjs-bootstrap all 3.4.1+dfsg-1 [173 kB]
Get:154 http://172.17.0.1/private bullseye-staging/main armhf libjs-d3 all 3.5.17-2 [132 kB]
Get:155 http://172.17.0.1/private bullseye-staging/main armhf libjs-es5-shim all 4.5.14-1 [43.1 kB]
Get:156 http://172.17.0.1/private bullseye-staging/main armhf libjs-highlight.js all 9.12.0+dfsg1-5 [300 kB]
Get:157 http://172.17.0.1/private bullseye-staging/main armhf node-jquery all 3.5.1+dfsg-3 [309 kB]
Get:158 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery all 3.5.1+dfsg-3 [3548 B]
Get:159 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-datatables all 1.10.21+dfsg-1 [137 kB]
Get:160 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-datatables-extensions all 0.0+git20150910.28fd64e+dfsg-3 [424 kB]
Get:161 http://172.17.0.1/private bullseye-staging/main armhf libjs-sifter.js all 0.6.0+dfsg-1 [12.1 kB]
Get:162 http://172.17.0.1/private bullseye-staging/main armhf libjs-microplugin.js all 0.0.3+dfsg-1 [3430 B]
Get:163 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-selectize.js all 0.12.6+dfsg-1 [51.9 kB]
Get:164 http://172.17.0.1/private bullseye-staging/main armhf libjs-jquery-ui all 1.12.1+dfsg-5 [232 kB]
Get:165 http://172.17.0.1/private bullseye-staging/main armhf libjs-json all 0~20190826-1 [19.1 kB]
Get:166 http://172.17.0.1/private bullseye-staging/main armhf libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4 [32.0 kB]
Get:167 http://172.17.0.1/private bullseye-staging/main armhf libnlopt0 armhf 2.6.1-8 [138 kB]
Get:168 http://172.17.0.1/private bullseye-staging/main armhf libtbb2 armhf 2020.2-2 [117 kB]
Get:169 http://172.17.0.1/private bullseye-staging/main armhf libtbb-dev armhf 2020.2-2 [312 kB]
Get:170 http://172.17.0.1/private bullseye-staging/main armhf libuv1 armhf 1.35.0-2 [115 kB]
Get:171 http://172.17.0.1/private bullseye-staging/main armhf r-cran-littler armhf 0.3.9-1+b1 [308 kB]
Get:172 http://172.17.0.1/private bullseye-staging/main armhf littler all 0.3.9-1 [14.6 kB]
Get:173 http://172.17.0.1/private bullseye-staging/main armhf node-html5shiv all 3.7.3+dfsg-3 [12.9 kB]
Get:174 http://172.17.0.1/private bullseye-staging/main armhf r-cran-sys armhf 3.3-1+b1 [42.8 kB]
Get:175 http://172.17.0.1/private bullseye-staging/main armhf r-cran-askpass armhf 1.1-1+b1 [22.2 kB]
Get:176 http://172.17.0.1/private bullseye-staging/main armhf r-cran-assertthat all 0.2.1-2 [56.5 kB]
Get:177 http://172.17.0.1/private bullseye-staging/main armhf r-cran-backports armhf 1.1.7-1 [72.6 kB]
Get:178 http://172.17.0.1/private bullseye-staging/main armhf r-cran-base64enc armhf 0.1-3-2+b1 [27.8 kB]
Get:179 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rlang armhf 0.4.6-1+b1 [1117 kB]
Get:180 http://172.17.0.1/private bullseye-staging/main armhf r-cran-ellipsis armhf 0.3.1-1 [31.5 kB]
Get:181 http://172.17.0.1/private bullseye-staging/main armhf r-cran-glue armhf 1.4.1-1 [138 kB]
Get:182 http://172.17.0.1/private bullseye-staging/main armhf r-cran-magrittr all 1.5-6 [154 kB]
Get:183 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:184 http://172.17.0.1/private bullseye-staging/main armhf r-cran-r6 all 2.4.1-2 [79.2 kB]
Get:185 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgkitten all 0.1.5-2 [23.7 kB]
Get:186 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcpp armhf 1.0.4.6-1+b1 [1907 kB]
Get:187 http://172.17.0.1/private bullseye-staging/main armhf r-cran-crayon all 1.3.4-5 [750 kB]
Get:188 http://172.17.0.1/private bullseye-staging/main armhf r-cran-fansi armhf 0.4.1-1+b1 [337 kB]
Get:189 http://172.17.0.1/private bullseye-staging/main armhf r-cran-cli all 2.0.2-2 [392 kB]
Get:190 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lifecycle all 0.2.0-2 [93.2 kB]
Get:191 http://172.17.0.1/private bullseye-staging/main armhf r-cran-utf8 armhf 1.1.4-1+b2 [127 kB]
Get:192 http://172.17.0.1/private bullseye-staging/main armhf r-cran-digest armhf 0.6.25-1+b1 [177 kB]
Get:193 http://172.17.0.1/private bullseye-staging/main armhf r-cran-vctrs armhf 0.3.0-2 [957 kB]
Get:194 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pillar all 1.4.4-2 [230 kB]
Get:195 http://172.17.0.1/private bullseye-staging/main armhf r-cran-tibble armhf 3.0.1-1+b1 [425 kB]
Get:196 http://172.17.0.1/private bullseye-staging/main armhf r-cran-purrr armhf 0.3.4-1+b1 [402 kB]
Get:197 http://172.17.0.1/private bullseye-staging/main armhf r-cran-tidyselect armhf 1.1.0+dfsg-1 [193 kB]
Get:198 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bh all 1.66.0-1 [5072 B]
Get:199 http://172.17.0.1/private bullseye-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:200 http://172.17.0.1/private bullseye-staging/main armhf r-cran-dplyr armhf 0.8.5-1+b1 [1779 kB]
Get:201 http://172.17.0.1/private bullseye-staging/main armhf r-cran-gtable all 0.3.0+dfsg-2 [163 kB]
Get:202 http://172.17.0.1/private bullseye-staging/main armhf r-cran-evaluate all 0.14-2 [81.1 kB]
Get:203 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rprojroot all 1.3-2-3 [97.5 kB]
Get:204 http://172.17.0.1/private bullseye-staging/main armhf r-cran-desc all 1.2.0-3 [301 kB]
Get:205 http://172.17.0.1/private bullseye-staging/main armhf r-cran-ps armhf 1.3.3-1+b1 [215 kB]
Get:206 http://172.17.0.1/private bullseye-staging/main armhf r-cran-processx armhf 3.4.2-1+b1 [265 kB]
Get:207 http://172.17.0.1/private bullseye-staging/main armhf r-cran-callr all 3.4.3-2 [388 kB]
Get:208 http://172.17.0.1/private bullseye-staging/main armhf r-cran-prettyunits all 1.1.1-2 [39.1 kB]
Get:209 http://172.17.0.1/private bullseye-staging/main armhf r-cran-withr all 2.2.0-2 [209 kB]
Get:210 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgbuild all 1.0.8-2 [140 kB]
Get:211 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rstudioapi all 0.11-2 [249 kB]
Get:212 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgload armhf 1.0.2-2 [163 kB]
Get:213 http://172.17.0.1/private bullseye-staging/main armhf r-cran-praise all 1.0.0-4 [20.1 kB]
Get:214 http://172.17.0.1/private bullseye-staging/main armhf r-cran-testthat armhf 2.3.2-2 [1038 kB]
Get:215 http://172.17.0.1/private bullseye-staging/main armhf r-cran-isoband armhf 0.2.1-1+b1 [2457 kB]
Get:216 http://172.17.0.1/private bullseye-staging/main armhf r-cran-mass armhf 7.3-51.6-1+b1 [1114 kB]
Get:217 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lattice armhf 0.20-41-1+b1 [1167 kB]
Get:218 http://172.17.0.1/private bullseye-staging/main armhf r-cran-nlme armhf 3.1.147-1+b1 [2221 kB]
Get:219 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrix armhf 1.2-18-1+b1 [3451 kB]
Get:220 http://172.17.0.1/private bullseye-staging/main armhf r-cran-mgcv armhf 1.8-31-1+b1 [2731 kB]
Get:221 http://172.17.0.1/private bullseye-staging/main armhf r-cran-farver armhf 2.0.3-1+b1 [1381 kB]
Get:222 http://172.17.0.1/private bullseye-staging/main armhf r-cran-labeling all 0.3-4 [62.2 kB]
Get:223 http://172.17.0.1/private bullseye-staging/main armhf r-cran-colorspace armhf 1.4-1+dfsg-1+b1 [1636 kB]
Get:224 http://172.17.0.1/private bullseye-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:225 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB]
Get:226 http://172.17.0.1/private bullseye-staging/main armhf r-cran-viridislite all 0.3.0-4 [59.2 kB]
Get:227 http://172.17.0.1/private bullseye-staging/main armhf r-cran-scales all 1.1.1-1 [557 kB]
Get:228 http://172.17.0.1/private bullseye-staging/main armhf r-cran-ggplot2 all 3.3.0+dfsg-2 [3085 kB]
Get:229 http://172.17.0.1/private bullseye-staging/main armhf r-cran-plyr armhf 1.8.6-2 [830 kB]
Get:230 http://172.17.0.1/private bullseye-staging/main armhf r-cran-ggridges all 0.5.2-2 [2250 kB]
Get:231 http://172.17.0.1/private bullseye-staging/main armhf r-cran-stringi armhf 1.4.6-1+b1 [686 kB]
Get:232 http://172.17.0.1/private bullseye-staging/main armhf r-cran-stringr all 1.4.0-2 [199 kB]
Get:233 http://172.17.0.1/private bullseye-staging/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB]
Get:234 http://172.17.0.1/private bullseye-staging/main armhf r-cran-bayesplot all 1.7.1-3 [5759 kB]
Get:235 http://172.17.0.1/private bullseye-staging/main armhf r-cran-boot all 1.3-25-2 [621 kB]
Get:236 http://172.17.0.1/private bullseye-staging/main armhf r-cran-checkmate armhf 2.0.0-1+b1 [600 kB]
Get:237 http://172.17.0.1/private bullseye-staging/main armhf r-cran-htmltools armhf 0.4.0-2 [196 kB]
Get:238 http://172.17.0.1/private bullseye-staging/main armhf r-cran-jsonlite armhf 1.6.1+dfsg-1+b1 [437 kB]
Get:239 http://172.17.0.1/private bullseye-staging/main armhf r-cran-yaml armhf 2.2.1-1+b1 [92.2 kB]
Get:240 http://172.17.0.1/private bullseye-staging/main armhf r-cran-htmlwidgets all 1.5.1+dfsg-2 [115 kB]
Get:241 http://172.17.0.1/private bullseye-staging/main armhf r-cran-later armhf 1.0.0+dfsg-2+b1 [96.9 kB]
Get:242 http://172.17.0.1/private bullseye-staging/main armhf r-cran-promises armhf 1.1.0-1+b1 [1202 kB]
Get:243 http://172.17.0.1/private bullseye-staging/main armhf r-cran-httpuv armhf 1.5.2+dfsg-2 [447 kB]
Get:244 http://172.17.0.1/private bullseye-staging/main armhf r-cran-mime armhf 0.9-1+b1 [35.4 kB]
Get:245 http://172.17.0.1/private bullseye-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:246 http://172.17.0.1/private bullseye-staging/main armhf r-cran-sourcetools armhf 0.1.7-2+b1 [44.2 kB]
Get:247 http://172.17.0.1/private bullseye-staging/main armhf r-cran-fastmap armhf 1.0.1-2+b1 [41.7 kB]
Get:248 http://172.17.0.1/private bullseye-staging/main armhf r-cran-shiny all 1.4.0.2+dfsg-2 [3190 kB]
Get:249 http://172.17.0.1/private bullseye-staging/main armhf r-cran-miniui all 0.1.1.1-3 [35.9 kB]
Get:250 http://172.17.0.1/private bullseye-staging/main armhf r-cran-shinyjs all 1.1-2 [942 kB]
Get:251 http://172.17.0.1/private bullseye-staging/main armhf r-cran-colourpicker all 1.0+dfsg-3 [1787 kB]
Get:252 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lazyeval armhf 0.2.2-1+b1 [141 kB]
Get:253 http://172.17.0.1/private bullseye-staging/main armhf r-cran-crosstalk all 1.1.0.1+dfsg-2 [157 kB]
Get:254 http://172.17.0.1/private bullseye-staging/main armhf r-cran-curl armhf 4.3+dfsg-1+b1 [150 kB]
Get:255 http://172.17.0.1/private bullseye-staging/main armhf r-cran-dt all 0.13+dfsg-3 [194 kB]
Get:256 http://172.17.0.1/private bullseye-staging/main armhf r-cran-zoo armhf 1.8-8-1+b1 [1051 kB]
Get:257 http://172.17.0.1/private bullseye-staging/main armhf r-cran-xts armhf 0.12-0-1+b1 [876 kB]
Get:258 http://172.17.0.1/private bullseye-staging/main armhf r-cran-dygraphs all 1.1.1.6+dfsg-2 [293 kB]
Get:259 http://172.17.0.1/private bullseye-staging/main armhf r-cran-gridextra all 2.3-3 [1024 kB]
Get:260 http://172.17.0.1/private bullseye-staging/main armhf r-cran-gtools armhf 3.8.2-1+b1 [330 kB]
Get:261 http://172.17.0.1/private bullseye-staging/main armhf r-cran-igraph armhf 1.2.5-1+b1 [3315 kB]
Get:262 http://172.17.0.1/private bullseye-staging/main armhf r-cran-inline all 0.3.15-3 [124 kB]
Get:263 http://172.17.0.1/private bullseye-staging/main armhf r-cran-minqa armhf 1.2.4-1+b2 [100 kB]
Get:264 http://172.17.0.1/private bullseye-staging/main armhf r-cran-nloptr armhf 1.2.2.1-1+b1 [287 kB]
Get:265 http://172.17.0.1/private bullseye-staging/main armhf r-cran-statmod armhf 1.4.34-1+b1 [257 kB]
Get:266 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcppeigen armhf 0.3.3.7.0-1+b1 [1339 kB]
Get:267 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lme4 armhf 1.1-23-1+b1 [4963 kB]
Get:268 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrixstats armhf 0.56.0-1+b1 [582 kB]
Get:269 http://172.17.0.1/private bullseye-staging/main armhf r-cran-loo all 2.2.0-2 [2745 kB]
Get:270 http://172.17.0.1/private bullseye-staging/main armhf r-cran-xfun all 0.13-2 [181 kB]
Get:271 http://172.17.0.1/private bullseye-staging/main armhf r-cran-markdown armhf 1.1+dfsg-1+b1 [120 kB]
Get:272 http://172.17.0.1/private bullseye-staging/main armhf r-cran-openssl armhf 1.4.1+dfsg-2+b1 [368 kB]
Get:273 http://172.17.0.1/private bullseye-staging/main armhf r-cran-packrat all 0.5.0-3 [463 kB]
Get:274 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcppparallel armhf 5.0.1+dfsg-1+b1 [114 kB]
Get:275 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rsconnect all 0.8.16-2 [657 kB]
Get:276 http://172.17.0.1/private bullseye-staging/main armhf r-cran-stanheaders armhf 2.21.0-1-1+b1 [774 kB]
Get:277 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rstan armhf 2.19.3-1+b1 [2009 kB]
Get:278 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rstantools all 2.0.0-2 [155 kB]
Get:279 http://172.17.0.1/private bullseye-staging/main armhf r-cran-shinythemes all 1.1.2+dfsg-2 [428 kB]
Get:280 http://172.17.0.1/private bullseye-staging/main armhf r-cran-threejs all 0.3.3+dfsg-2 [881 kB]
Get:281 http://172.17.0.1/private bullseye-staging/main armhf r-cran-shinystan all 2.5.0-3 [2558 kB]
Get:282 http://172.17.0.1/private bullseye-staging/main armhf r-cran-survival armhf 3.1-12-1+b1 [7455 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libgcc-s1:armhf (10.1.0-2+rpi1) ...
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Setting up r-cran-praise (1.0.0-4) ...
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Setting up r-cran-prettyunits (1.1.1-2) ...
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Setting up r-cran-checkmate (2.0.0-1+b1) ...
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Setting up r-cran-gtools (3.8.2-1+b1) ...
Setting up r-cran-glue (1.4.1-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
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Setting up r-cran-utf8 (1.1.4-1+b2) ...
Setting up r-cran-colorspace (1.4-1+dfsg-1+b1) ...
Setting up r-cran-stringi (1.4.6-1+b1) ...
Setting up r-cran-markdown (1.1+dfsg-1+b1) ...
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Setting up r-cran-rcolorbrewer (1.1-2-3) ...
Setting up r-cran-gridextra (2.3-3) ...
Setting up r-cran-purrr (0.3.4-1+b1) ...
Setting up r-cran-zoo (1.8-8-1+b1) ...
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Setting up r-cran-matrix (1.2-18-1+b1) ...
Setting up r-cran-htmltools (0.4.0-2) ...
Setting up r-cran-mgcv (1.8-31-1+b1) ...
Setting up r-cran-loo (2.2.0-2) ...
Setting up r-cran-crosstalk (1.1.0.1+dfsg-2) ...
Setting up r-cran-rcppeigen (0.3.3.7.0-1+b1) ...
Setting up r-cran-stanheaders (2.21.0-1-1+b1) ...
Setting up r-cran-ellipsis (0.3.1-1) ...
Setting up r-cran-minqa (1.2.4-1+b2) ...
Setting up r-cran-openssl (1.4.1+dfsg-2+b1) ...
Setting up r-cran-stringr (1.4.0-2) ...
Setting up r-cran-callr (3.4.3-2) ...
Setting up r-cran-desc (1.2.0-3) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-survival (3.1-12-1+b1) ...
Setting up r-cran-igraph (1.2.5-1+b1) ...
Setting up r-cran-xts (0.12-0-1+b1) ...
Setting up r-cran-lme4 (1.1-23-1+b1) ...
Setting up r-cran-htmlwidgets (1.5.1+dfsg-2) ...
Setting up r-cran-reshape2 (1.4.4-2) ...
Setting up r-cran-threejs (0.3.3+dfsg-2) ...
Setting up r-cran-rsconnect (0.8.16-2) ...
Setting up r-cran-scales (1.1.1-1) ...
Setting up r-cran-promises (1.1.0-1+b1) ...
Setting up r-cran-rstantools (2.0.0-2) ...
Setting up r-cran-pkgbuild (1.0.8-2) ...
Setting up r-cran-vctrs (0.3.0-2) ...
Setting up r-cran-pillar (1.4.4-2) ...
Setting up r-cran-dt (0.13+dfsg-3) ...
Setting up r-cran-pkgload (1.0.2-2) ...
Setting up r-cran-httpuv (1.5.2+dfsg-2) ...
Setting up r-cran-tibble (3.0.1-1+b1) ...
Setting up r-cran-dygraphs (1.1.1.6+dfsg-2) ...
Setting up r-cran-shiny (1.4.0.2+dfsg-2) ...
Setting up r-cran-shinyjs (1.1-2) ...
Setting up r-cran-tidyselect (1.1.0+dfsg-1) ...
Setting up r-cran-testthat (2.3.2-2) ...
Setting up r-cran-miniui (0.1.1.1-3) ...
Setting up r-cran-isoband (0.2.1-1+b1) ...
Setting up r-cran-dplyr (0.8.5-1+b1) ...
Setting up r-cran-shinythemes (1.1.2+dfsg-2) ...
Setting up r-cran-ggplot2 (3.3.0+dfsg-2) ...
Setting up r-cran-colourpicker (1.0+dfsg-3) ...
Setting up r-cran-ggridges (0.5.2-2) ...
Setting up r-cran-rstan (2.19.3-1+b1) ...
Setting up r-cran-bayesplot (1.7.1-3) ...
Setting up r-cran-shinystan (2.5.0-3) ...
Setting up debhelper (13.1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-r (20200314) ...
Setting up sbuild-build-depends-r-cran-rstanarm-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.30-8+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.34-8+rpi1 dpkg-dev_1.19.7 g++-9_9.3.0-13+rpi1 gcc-9_9.3.0-13+rpi1 libc6-dev_2.30-8+rpi1 libstdc++-9-dev_9.3.0-13+rpi1 libstdc++6_10.1.0-2+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_2.1.4 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-6 binutils_2.34-8+rpi1 binutils-arm-linux-gnueabihf_2.34-8+rpi1 binutils-common_2.34-8+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.35.1-5 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.3.0-13+rpi1 dash_0.5.10.2-7 dctrl-tools_2.24-3 debconf_1.5.74 debhelper_13.1 debianutils_4.9.1 dh-autoreconf_19 dh-r_20200314 dh-strip-nondeterminism_1.8.1-1 diffutils_1:3.7-3 dirmngr_2.2.20-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.35.1-5 file_1:5.38-5 findutils_4.7.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-1 fonts-font-awesome_5.0.10+really4.7.0~dfsg-1 fonts-glewlwyd_1.4.9-3 fonts-glyphicons-halflings_1.009~3.4.1+dfsg-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.3.0-13+rpi1 gcc_4:9.2.1-3.1+rpi1 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r-cran-curl_4.3+dfsg-1+b1 r-cran-desc_1.2.0-3 r-cran-digest_0.6.25-1+b1 r-cran-dplyr_0.8.5-1+b1 r-cran-dt_0.13+dfsg-3 r-cran-dygraphs_1.1.1.6+dfsg-2 r-cran-ellipsis_0.3.1-1 r-cran-evaluate_0.14-2 r-cran-fansi_0.4.1-1+b1 r-cran-farver_2.0.3-1+b1 r-cran-fastmap_1.0.1-2+b1 r-cran-ggplot2_3.3.0+dfsg-2 r-cran-ggridges_0.5.2-2 r-cran-glue_1.4.1-1 r-cran-gridextra_2.3-3 r-cran-gtable_0.3.0+dfsg-2 r-cran-gtools_3.8.2-1+b1 r-cran-htmltools_0.4.0-2 r-cran-htmlwidgets_1.5.1+dfsg-2 r-cran-httpuv_1.5.2+dfsg-2 r-cran-igraph_1.2.5-1+b1 r-cran-inline_0.3.15-3 r-cran-isoband_0.2.1-1+b1 r-cran-jsonlite_1.6.1+dfsg-1+b1 r-cran-labeling_0.3-4 r-cran-later_1.0.0+dfsg-2+b1 r-cran-lattice_0.20-41-1+b1 r-cran-lazyeval_0.2.2-1+b1 r-cran-lifecycle_0.2.0-2 r-cran-littler_0.3.9-1+b1 r-cran-lme4_1.1-23-1+b1 r-cran-loo_2.2.0-2 r-cran-magrittr_1.5-6 r-cran-markdown_1.1+dfsg-1+b1 r-cran-mass_7.3-51.6-1+b1 r-cran-matrix_1.2-18-1+b1 r-cran-matrixstats_0.56.0-1+b1 r-cran-mgcv_1.8-31-1+b1 r-cran-mime_0.9-1+b1 r-cran-miniui_0.1.1.1-3 r-cran-minqa_1.2.4-1+b2 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.147-1+b1 r-cran-nloptr_1.2.2.1-1+b1 r-cran-openssl_1.4.1+dfsg-2+b1 r-cran-packrat_0.5.0-3 r-cran-pillar_1.4.4-2 r-cran-pkgbuild_1.0.8-2 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.1.5-2 r-cran-pkgload_1.0.2-2 r-cran-plogr_0.2.0-3 r-cran-plyr_1.8.6-2 r-cran-praise_1.0.0-4 r-cran-prettyunits_1.1.1-2 r-cran-processx_3.4.2-1+b1 r-cran-promises_1.1.0-1+b1 r-cran-ps_1.3.3-1+b1 r-cran-purrr_0.3.4-1+b1 r-cran-r6_2.4.1-2 r-cran-rcolorbrewer_1.1-2-3 r-cran-rcpp_1.0.4.6-1+b1 r-cran-rcppeigen_0.3.3.7.0-1+b1 r-cran-rcppparallel_5.0.1+dfsg-1+b1 r-cran-reshape2_1.4.4-2 r-cran-rlang_0.4.6-1+b1 r-cran-rprojroot_1.3-2-3 r-cran-rsconnect_0.8.16-2 r-cran-rstan_2.19.3-1+b1 r-cran-rstantools_2.0.0-2 r-cran-rstudioapi_0.11-2 r-cran-scales_1.1.1-1 r-cran-shiny_1.4.0.2+dfsg-2 r-cran-shinyjs_1.1-2 r-cran-shinystan_2.5.0-3 r-cran-shinythemes_1.1.2+dfsg-2 r-cran-sourcetools_0.1.7-2+b1 r-cran-stanheaders_2.21.0-1-1+b1 r-cran-statmod_1.4.34-1+b1 r-cran-stringi_1.4.6-1+b1 r-cran-stringr_1.4.0-2 r-cran-survival_3.1-12-1+b1 r-cran-sys_3.3-1+b1 r-cran-testthat_2.3.2-2 r-cran-threejs_0.3.3+dfsg-2 r-cran-tibble_3.0.1-1+b1 r-cran-tidyselect_1.1.0+dfsg-1 r-cran-utf8_1.1.4-1+b2 r-cran-vctrs_0.3.0-2 r-cran-viridislite_0.3.0-4 r-cran-withr_2.2.0-2 r-cran-xfun_0.13-2 r-cran-xtable_1:1.8-4-2 r-cran-xts_0.12-0-1+b1 r-cran-yaml_2.2.1-1+b1 r-cran-zoo_1.8-8-1+b1 raspbian-archive-keyring_20120528.2 readline-common_8.0-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-rstanarm-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0042 unzip_6.0-25 util-linux_2.35.1-5 x11-common_1:7.7+20 xauth_1:1.0.10-1 xdg-utils_1.1.3-2 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Apr 15 12:37:18 2020 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-rstanarm_2.19.3-1.dsc
dpkg-source: info: extracting r-cran-rstanarm in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-rstanarm_2.19.3.orig.tar.gz
dpkg-source: info: unpacking r-cran-rstanarm_2.19.3-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying unversioned_bh.patch
Check disc space
----------------
Sufficient free space for build
Hack binNMU version
-------------------
Created changelog entry for binNMU version 2.19.3-1+b1
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-1794d5bc-17d5-4268-bb7a-60d9e332c84a
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-rstanarm
dpkg-buildpackage: info: source version 2.19.3-1+b1
dpkg-buildpackage: info: source distribution bullseye-staging
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: testthat, stanheaders (>= 2.18.1-10-2), bh, codetools, r-base-dev
I: R Package: rstanarm Version: 2.19.3
I: Building using R version 4.0.0-3
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Wed, 15 Apr 2020 14:04:02 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-rstanarm/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-rstanarm/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 15 Apr 2020 14:04:02 +0200'"
* installing *source* package 'rstanarm' ...
file 'DESCRIPTION' has the wrong MD5 checksum
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/lm.stan
Wrote C++ file "stan_files/lm.cc"
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-qUFFBN/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stan_files/lm.cc -o stan_files/lm.o
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void stan::mcmc::ps_point::get_params(std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_lm_namespace::model_lm; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_lm_namespace::model_lm; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_lm_namespace::model_lm; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_lm_namespace::model_lm; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_lm_namespace::model_lm; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_lm_namespace::model_lm; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_lm_namespace::model_lm; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_lm_namespace::model_lm; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_lm_namespace::model_lm; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void model_lm_namespace::model_lm::transform_inits(const stan::io::var_context&, std::vector<int>&, std::vector<double>&, std::ostream*) const':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:130:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
130 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:130:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:161:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
161 | _M_realloc_insert(begin() + (__position - cbegin()), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_lm_namespace::model_lm]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_lm_namespace::model_lm; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = model_lm_namespace::model_lm]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_lm_namespace::model_lm; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_lm_namespace::model_lm; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_lm_namespace::model_lm; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void model_lm_namespace::model_lm::write_array(RNG&, std::vector<double>&, std::vector<int>&, std::vector<double>&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::services::util::mcmc_writer::write_sample_params(RNG&, stan::mcmc::sample&, stan::mcmc::base_mcmc&, Model&) [with Model = model_lm_namespace::model_lm; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void stan::services::util::generate_transitions(stan::mcmc::base_mcmc&, int, int, int, int, int, bool, bool, stan::services::util::mcmc_writer&, stan::mcmc::sample&, Model&, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&) [with Model = model_lm_namespace::model_lm; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_lm_namespace::model_lm; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_lm_namespace::model_lm; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:37,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/lm.hpp:18,
from stan_files/lm.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp: In function 'int stan::services::optimize::lbfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_lm_namespace::model_lm]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:100:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
100 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:155:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
155 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:167:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
167 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:36,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/lm.hpp:18,
from stan_files/lm.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp: In function 'int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_lm_namespace::model_lm]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:98:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
98 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:154:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
154 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:165:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
165 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::random_access_iterator_tag) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
112 | inline SEXP primitive_range_wrap__impl__nocast(InputIterator first, InputIterator last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::constrain_pars(SEXP) [with Model = model_lm_namespace::model_lm; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::unconstrain_pars(SEXP) [with Model = model_lm_namespace::model_lm; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::log_prob(SEXP, SEXP, SEXP) [with Model = model_lm_namespace::model_lm; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy& Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy::operator=(const T&) [with T = std::vector<double>; CLASS = Rcpp::Vector<19>]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_lm_namespace::model_lm; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:38,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/lm.hpp:18,
from stan_files/lm.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp: In function 'int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_lm_namespace::model_lm]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:94:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
94 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:117:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
117 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_lm_namespace::model_lm]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_lm_namespace::model_lm]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_lm_namespace::model_lm; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/lm.cc:1:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/mvmer.stan
Wrote C++ file "stan_files/mvmer.cc"
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-qUFFBN/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stan_files/mvmer.cc -o stan_files/mvmer.o
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void stan::mcmc::ps_point::get_params(std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_mvmer_namespace::model_mvmer; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_mvmer_namespace::model_mvmer; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_mvmer_namespace::model_mvmer; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_mvmer_namespace::model_mvmer; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_mvmer_namespace::model_mvmer; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_mvmer_namespace::model_mvmer; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_mvmer_namespace::model_mvmer; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_mvmer_namespace::model_mvmer; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_mvmer_namespace::model_mvmer; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void model_mvmer_namespace::model_mvmer::transform_inits(const stan::io::var_context&, std::vector<int>&, std::vector<double>&, std::ostream*) const':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:130:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
130 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:161:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
161 | _M_realloc_insert(begin() + (__position - cbegin()), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from stan_files/mvmer.cc:3:
stan_files/mvmer.hpp: In member function 'void model_mvmer_namespace::model_mvmer::ctor_body(stan::io::var_context&, unsigned int, std::ostream*)':
stan_files/mvmer.hpp:3868:10: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without
3868 | void ctor_body(stan::io::var_context& context__,
| ^~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void model_mvmer_namespace::model_mvmer::write_array(RNG&, std::vector<double>&, std::vector<int>&, std::vector<double>&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::services::util::mcmc_writer::write_sample_params(RNG&, stan::mcmc::sample&, stan::mcmc::base_mcmc&, Model&) [with Model = model_mvmer_namespace::model_mvmer; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void stan::services::util::generate_transitions(stan::mcmc::base_mcmc&, int, int, int, int, int, bool, bool, stan::services::util::mcmc_writer&, stan::mcmc::sample&, Model&, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&) [with Model = model_mvmer_namespace::model_mvmer; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_mvmer_namespace::model_mvmer]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_mvmer_namespace::model_mvmer; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_mvmer_namespace::model_mvmer; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = model_mvmer_namespace::model_mvmer]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_mvmer_namespace::model_mvmer; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_mvmer_namespace::model_mvmer; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_mvmer_namespace::model_mvmer; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_mvmer_namespace::model_mvmer; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:36,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mvmer.hpp:18,
from stan_files/mvmer.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp: In function 'int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mvmer_namespace::model_mvmer]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:98:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
98 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:154:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
154 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:165:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
165 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:37,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mvmer.hpp:18,
from stan_files/mvmer.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp: In function 'int stan::services::optimize::lbfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mvmer_namespace::model_mvmer]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:100:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
100 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:155:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
155 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:167:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
167 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::random_access_iterator_tag) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
112 | inline SEXP primitive_range_wrap__impl__nocast(InputIterator first, InputIterator last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::unconstrain_pars(SEXP) [with Model = model_mvmer_namespace::model_mvmer; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::log_prob(SEXP, SEXP, SEXP) [with Model = model_mvmer_namespace::model_mvmer; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy& Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy::operator=(const T&) [with T = std::vector<double>; CLASS = Rcpp::Vector<19>]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::constrain_pars(SEXP) [with Model = model_mvmer_namespace::model_mvmer; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_mvmer_namespace::model_mvmer; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:38,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/mvmer.hpp:18,
from stan_files/mvmer.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp: In function 'int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_mvmer_namespace::model_mvmer]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:94:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
94 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:117:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
117 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_mvmer_namespace::model_mvmer]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_mvmer_namespace::model_mvmer]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_mvmer_namespace::model_mvmer; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/mvmer.cc:1:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/binomial.stan
Wrote C++ file "stan_files/binomial.cc"
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-qUFFBN/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stan_files/binomial.cc -o stan_files/binomial.o
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void stan::mcmc::ps_point::get_params(std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_binomial_namespace::model_binomial; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_binomial_namespace::model_binomial; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_binomial_namespace::model_binomial; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_binomial_namespace::model_binomial; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_binomial_namespace::model_binomial; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_binomial_namespace::model_binomial; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_binomial_namespace::model_binomial; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_binomial_namespace::model_binomial; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_binomial_namespace::model_binomial; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:130:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
130 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:161:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
161 | _M_realloc_insert(begin() + (__position - cbegin()), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void model_binomial_namespace::model_binomial::write_array(RNG&, std::vector<double>&, std::vector<int>&, std::vector<double>&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::services::util::mcmc_writer::write_sample_params(RNG&, stan::mcmc::sample&, stan::mcmc::base_mcmc&, Model&) [with Model = model_binomial_namespace::model_binomial; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void stan::services::util::generate_transitions(stan::mcmc::base_mcmc&, int, int, int, int, int, bool, bool, stan::services::util::mcmc_writer&, stan::mcmc::sample&, Model&, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&) [with Model = model_binomial_namespace::model_binomial; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_binomial_namespace::model_binomial]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_binomial_namespace::model_binomial; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_binomial_namespace::model_binomial; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_binomial_namespace::model_binomial; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:37,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/binomial.hpp:18,
from stan_files/binomial.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp: In function 'int stan::services::optimize::lbfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_binomial_namespace::model_binomial]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:100:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
100 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:155:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
155 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:167:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
167 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = model_binomial_namespace::model_binomial]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_binomial_namespace::model_binomial; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_binomial_namespace::model_binomial; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_binomial_namespace::model_binomial; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:36,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/binomial.hpp:18,
from stan_files/binomial.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp: In function 'int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_binomial_namespace::model_binomial]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:98:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
98 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:154:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
154 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:165:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
165 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::random_access_iterator_tag) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
112 | inline SEXP primitive_range_wrap__impl__nocast(InputIterator first, InputIterator last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::unconstrain_pars(SEXP) [with Model = model_binomial_namespace::model_binomial; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::log_prob(SEXP, SEXP, SEXP) [with Model = model_binomial_namespace::model_binomial; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy& Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy::operator=(const T&) [with T = std::vector<double>; CLASS = Rcpp::Vector<19>]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::constrain_pars(SEXP) [with Model = model_binomial_namespace::model_binomial; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_binomial_namespace::model_binomial; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:38,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/binomial.hpp:18,
from stan_files/binomial.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp: In function 'int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_binomial_namespace::model_binomial]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:94:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
94 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:117:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
117 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_binomial_namespace::model_binomial]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_binomial_namespace::model_binomial]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_binomial_namespace::model_binomial; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/binomial.cc:1:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/count.stan
Wrote C++ file "stan_files/count.cc"
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-qUFFBN/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stan_files/count.cc -o stan_files/count.o
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void stan::mcmc::ps_point::get_params(std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_count_namespace::model_count; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_count_namespace::model_count; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_count_namespace::model_count; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_count_namespace::model_count; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_count_namespace::model_count; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_count_namespace::model_count; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_count_namespace::model_count; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_count_namespace::model_count; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_count_namespace::model_count; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:130:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
130 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:161:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
161 | _M_realloc_insert(begin() + (__position - cbegin()), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void model_count_namespace::model_count::write_array(RNG&, std::vector<double>&, std::vector<int>&, std::vector<double>&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::services::util::mcmc_writer::write_sample_params(RNG&, stan::mcmc::sample&, stan::mcmc::base_mcmc&, Model&) [with Model = model_count_namespace::model_count; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void stan::services::util::generate_transitions(stan::mcmc::base_mcmc&, int, int, int, int, int, bool, bool, stan::services::util::mcmc_writer&, stan::mcmc::sample&, Model&, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&) [with Model = model_count_namespace::model_count; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_count_namespace::model_count]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_count_namespace::model_count; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_count_namespace::model_count; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = model_count_namespace::model_count]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_count_namespace::model_count; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_count_namespace::model_count; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_count_namespace::model_count; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_count_namespace::model_count; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:36,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/count.hpp:18,
from stan_files/count.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp: In function 'int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_count_namespace::model_count]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:98:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
98 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:154:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
154 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:165:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
165 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:37,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/count.hpp:18,
from stan_files/count.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp: In function 'int stan::services::optimize::lbfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_count_namespace::model_count]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:100:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
100 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:155:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
155 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:167:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
167 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::random_access_iterator_tag) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
112 | inline SEXP primitive_range_wrap__impl__nocast(InputIterator first, InputIterator last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::unconstrain_pars(SEXP) [with Model = model_count_namespace::model_count; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::log_prob(SEXP, SEXP, SEXP) [with Model = model_count_namespace::model_count; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy& Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy::operator=(const T&) [with T = std::vector<double>; CLASS = Rcpp::Vector<19>]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::constrain_pars(SEXP) [with Model = model_count_namespace::model_count; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_count_namespace::model_count; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:38,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/count.hpp:18,
from stan_files/count.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp: In function 'int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_count_namespace::model_count]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:94:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
94 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:117:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
117 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_count_namespace::model_count]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_count_namespace::model_count]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_count_namespace::model_count; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/count.cc:1:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/jm.stan
Wrote C++ file "stan_files/jm.cc"
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-qUFFBN/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stan_files/jm.cc -o stan_files/jm.o
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void stan::mcmc::ps_point::get_params(std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_jm_namespace::model_jm; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_jm_namespace::model_jm; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_jm_namespace::model_jm; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_jm_namespace::model_jm; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_jm_namespace::model_jm; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_jm_namespace::model_jm; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_jm_namespace::model_jm; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_jm_namespace::model_jm; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_jm_namespace::model_jm; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void model_jm_namespace::model_jm::transform_inits(const stan::io::var_context&, std::vector<int>&, std::vector<double>&, std::ostream*) const':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:130:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
130 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:161:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
161 | _M_realloc_insert(begin() + (__position - cbegin()), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from stan_files/jm.cc:3:
stan_files/jm.hpp: In member function 'void model_jm_namespace::model_jm::ctor_body(stan::io::var_context&, unsigned int, std::ostream*)':
stan_files/jm.hpp:4695:10: note: variable tracking size limit exceeded with '-fvar-tracking-assignments', retrying without
4695 | void ctor_body(stan::io::var_context& context__,
| ^~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void model_jm_namespace::model_jm::write_array(RNG&, std::vector<double>&, std::vector<int>&, std::vector<double>&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::services::util::mcmc_writer::write_sample_params(RNG&, stan::mcmc::sample&, stan::mcmc::base_mcmc&, Model&) [with Model = model_jm_namespace::model_jm; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void stan::services::util::generate_transitions(stan::mcmc::base_mcmc&, int, int, int, int, int, bool, bool, stan::services::util::mcmc_writer&, stan::mcmc::sample&, Model&, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&) [with Model = model_jm_namespace::model_jm; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_jm_namespace::model_jm]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_jm_namespace::model_jm; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_jm_namespace::model_jm; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = model_jm_namespace::model_jm]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_jm_namespace::model_jm; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_jm_namespace::model_jm; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_jm_namespace::model_jm; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_jm_namespace::model_jm; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:36,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/jm.hpp:18,
from stan_files/jm.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp: In function 'int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_jm_namespace::model_jm]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:98:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
98 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:154:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
154 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:165:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
165 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:37,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/jm.hpp:18,
from stan_files/jm.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp: In function 'int stan::services::optimize::lbfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_jm_namespace::model_jm]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:100:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
100 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:155:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
155 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:167:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
167 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::random_access_iterator_tag) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
112 | inline SEXP primitive_range_wrap__impl__nocast(InputIterator first, InputIterator last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::unconstrain_pars(SEXP) [with Model = model_jm_namespace::model_jm; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::log_prob(SEXP, SEXP, SEXP) [with Model = model_jm_namespace::model_jm; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::constrain_pars(SEXP) [with Model = model_jm_namespace::model_jm; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_jm_namespace::model_jm; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:38,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/jm.hpp:18,
from stan_files/jm.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp: In function 'int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_jm_namespace::model_jm]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:94:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
94 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:117:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
117 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_jm_namespace::model_jm]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_jm_namespace::model_jm]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_jm_namespace::model_jm; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/jm.cc:1:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/bernoulli.stan
Wrote C++ file "stan_files/bernoulli.cc"
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-qUFFBN/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stan_files/bernoulli.cc -o stan_files/bernoulli.o
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void stan::mcmc::ps_point::get_params(std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_bernoulli_namespace::model_bernoulli; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_bernoulli_namespace::model_bernoulli; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_bernoulli_namespace::model_bernoulli; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_bernoulli_namespace::model_bernoulli; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_bernoulli_namespace::model_bernoulli; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_bernoulli_namespace::model_bernoulli; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_bernoulli_namespace::model_bernoulli; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_bernoulli_namespace::model_bernoulli; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_bernoulli_namespace::model_bernoulli; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:130:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
130 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:161:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
161 | _M_realloc_insert(begin() + (__position - cbegin()), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void model_bernoulli_namespace::model_bernoulli::write_array(RNG&, std::vector<double>&, std::vector<int>&, std::vector<double>&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::services::util::mcmc_writer::write_sample_params(RNG&, stan::mcmc::sample&, stan::mcmc::base_mcmc&, Model&) [with Model = model_bernoulli_namespace::model_bernoulli; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void stan::services::util::generate_transitions(stan::mcmc::base_mcmc&, int, int, int, int, int, bool, bool, stan::services::util::mcmc_writer&, stan::mcmc::sample&, Model&, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&) [with Model = model_bernoulli_namespace::model_bernoulli; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_bernoulli_namespace::model_bernoulli]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_bernoulli_namespace::model_bernoulli; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = model_bernoulli_namespace::model_bernoulli]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_bernoulli_namespace::model_bernoulli; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_bernoulli_namespace::model_bernoulli; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_bernoulli_namespace::model_bernoulli; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_bernoulli_namespace::model_bernoulli; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_bernoulli_namespace::model_bernoulli; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:36,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp: In function 'int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_bernoulli_namespace::model_bernoulli]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:98:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
98 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:154:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
154 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:165:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
165 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:37,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp: In function 'int stan::services::optimize::lbfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_bernoulli_namespace::model_bernoulli]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:100:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
100 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:155:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
155 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:167:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
167 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::random_access_iterator_tag) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
112 | inline SEXP primitive_range_wrap__impl__nocast(InputIterator first, InputIterator last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::unconstrain_pars(SEXP) [with Model = model_bernoulli_namespace::model_bernoulli; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::log_prob(SEXP, SEXP, SEXP) [with Model = model_bernoulli_namespace::model_bernoulli; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy& Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy::operator=(const T&) [with T = std::vector<double>; CLASS = Rcpp::Vector<19>]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::constrain_pars(SEXP) [with Model = model_bernoulli_namespace::model_bernoulli; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_bernoulli_namespace::model_bernoulli; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:38,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/bernoulli.hpp:18,
from stan_files/bernoulli.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp: In function 'int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_bernoulli_namespace::model_bernoulli]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:94:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
94 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:117:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
117 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_bernoulli_namespace::model_bernoulli]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_bernoulli_namespace::model_bernoulli]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_bernoulli_namespace::model_bernoulli; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/bernoulli.cc:1:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/polr.stan
Wrote C++ file "stan_files/polr.cc"
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-qUFFBN/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stan_files/polr.cc -o stan_files/polr.o
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void stan::mcmc::ps_point::get_params(std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_polr_namespace::model_polr; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_polr_namespace::model_polr; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_polr_namespace::model_polr; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_polr_namespace::model_polr; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_polr_namespace::model_polr; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_polr_namespace::model_polr; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_polr_namespace::model_polr; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_polr_namespace::model_polr; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_polr_namespace::model_polr; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void model_polr_namespace::model_polr::transform_inits(const stan::io::var_context&, std::vector<int>&, std::vector<double>&, std::ostream*) const':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:130:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
130 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:130:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:161:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
161 | _M_realloc_insert(begin() + (__position - cbegin()), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void model_polr_namespace::model_polr::write_array(RNG&, std::vector<double>&, std::vector<int>&, std::vector<double>&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::services::util::mcmc_writer::write_sample_params(RNG&, stan::mcmc::sample&, stan::mcmc::base_mcmc&, Model&) [with Model = model_polr_namespace::model_polr; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void stan::services::util::generate_transitions(stan::mcmc::base_mcmc&, int, int, int, int, int, bool, bool, stan::services::util::mcmc_writer&, stan::mcmc::sample&, Model&, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&) [with Model = model_polr_namespace::model_polr; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_polr_namespace::model_polr]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_polr_namespace::model_polr; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = model_polr_namespace::model_polr]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_polr_namespace::model_polr; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_polr_namespace::model_polr; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:37,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/polr.hpp:18,
from stan_files/polr.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp: In function 'int stan::services::optimize::lbfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_polr_namespace::model_polr]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:100:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
100 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:155:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
155 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:167:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
167 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_polr_namespace::model_polr; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_polr_namespace::model_polr; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_polr_namespace::model_polr; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:36,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/polr.hpp:18,
from stan_files/polr.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp: In function 'int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_polr_namespace::model_polr]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:98:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
98 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:154:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
154 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:165:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
165 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::random_access_iterator_tag) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
112 | inline SEXP primitive_range_wrap__impl__nocast(InputIterator first, InputIterator last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::unconstrain_pars(SEXP) [with Model = model_polr_namespace::model_polr; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::log_prob(SEXP, SEXP, SEXP) [with Model = model_polr_namespace::model_polr; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy& Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy::operator=(const T&) [with T = std::vector<double>; CLASS = Rcpp::Vector<19>]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::constrain_pars(SEXP) [with Model = model_polr_namespace::model_polr; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_polr_namespace::model_polr; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:38,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/polr.hpp:18,
from stan_files/polr.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp: In function 'int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_polr_namespace::model_polr]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:94:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
94 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:117:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
117 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_polr_namespace::model_polr]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_polr_namespace::model_polr]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_polr_namespace::model_polr; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/polr.cc:1:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
"/usr/lib/R/bin/Rscript" -e "source(file.path('..', 'tools', 'make_cc.R')); make_cc(commandArgs(TRUE))" stan_files/continuous.stan
Wrote C++ file "stan_files/continuous.cc"
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-qUFFBN/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stan_files/continuous.cc -o stan_files/continuous.o
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'virtual void stan::mcmc::ps_point::get_params(std::vector<double>&)':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_continuous_namespace::model_continuous; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_continuous_namespace::model_continuous; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_diagnostics(std::vector<double>&) [with Model = model_continuous_namespace::model_continuous; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_continuous_namespace::model_continuous; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_continuous_namespace::model_continuous; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_static_hmc<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_continuous_namespace::model_continuous; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_continuous_namespace::model_continuous; Hamiltonian = stan::mcmc::diag_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_continuous_namespace::model_continuous; Hamiltonian = stan::mcmc::dense_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::mcmc::base_nuts<Model, Hamiltonian, Integrator, BaseRNG>::get_sampler_params(std::vector<double>&) [with Model = model_continuous_namespace::model_continuous; Hamiltonian = stan::mcmc::unit_e_metric; Integrator = stan::mcmc::expl_leapfrog; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(std::vector<_Tp, _Alloc>::const_iterator, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:130:5: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
130 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:161:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
161 | _M_realloc_insert(begin() + (__position - cbegin()), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_fill_insert(std::vector<_Tp, _Alloc>::iterator, std::vector<_Tp, _Alloc>::size_type, const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:509:5: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
509 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = const double*; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
721 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_range_insert(std::vector<_Tp, _Alloc>::iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc:721:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void model_continuous_namespace::model_continuous::write_array(RNG&, std::vector<double>&, std::vector<int>&, std::vector<double>&, bool, bool, std::ostream*) const [with RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::services::util::mcmc_writer::write_sample_params(RNG&, stan::mcmc::sample&, stan::mcmc::base_mcmc&, Model&) [with Model = model_continuous_namespace::model_continuous; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type 'std::vector<double>::iterator' {aka '__gnu_cxx::__normal_iterator<double*, std::vector<double> >'} changed in GCC 7.1
1662 | _M_range_insert(__pos, __first, __last,
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1662:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_vector.h:1335:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1335 | _M_fill_insert(begin() + __offset, __n, __x);
| ^~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In function 'void stan::services::util::generate_transitions(stan::mcmc::base_mcmc&, int, int, int, int, int, bool, bool, stan::services::util::mcmc_writer&, stan::mcmc::sample&, Model&, RNG&, stan::callbacks::interrupt&, stan::callbacks::logger&) [with Model = model_continuous_namespace::model_continuous; RNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_continuous_namespace::model_continuous]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_continuous_namespace::model_continuous; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob(Eigen::VectorXd&, std::ostream*) const [with M = model_continuous_namespace::model_continuous]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::variational::advi<Model, Q, BaseRNG>::calc_ELBO(const Q&, stan::callbacks::logger&) const [with Model = model_continuous_namespace::model_continuous; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/bits/stl_algo.h:61,
from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/stl_heap.h: In function 'void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_heap.h:214:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
214 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex,
| ^~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/stl_algo.h: In function 'void std::__introselect(_RandomAccessIterator, _RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double> >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_less_iter]':
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1976 | __introselect(_RandomAccessIterator __first, _RandomAccessIterator __nth,
| ^~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
/usr/include/c++/9/bits/stl_algo.h:1976:5: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In function 'SEXPREC* Rcpp::internal::primitive_range_wrap__impl__nocast(InputIterator, InputIterator, std::random_access_iterator_tag) [with InputIterator = __gnu_cxx::__normal_iterator<const double*, std::vector<double> >; T = double]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
112 | inline SEXP primitive_range_wrap__impl__nocast(InputIterator first, InputIterator last,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:112:21: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::unconstrain_pars(SEXP) [with Model = model_continuous_namespace::model_continuous; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy& Rcpp::AttributeProxyPolicy<CLASS>::AttributeProxy::operator=(const T&) [with T = std::vector<double>; CLASS = Rcpp::Vector<19>]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::constrain_pars(SEXP) [with Model = model_continuous_namespace::model_continuous; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_continuous_namespace::model_continuous; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'void stan::variational::advi<Model, Q, BaseRNG>::stochastic_gradient_ascent(Q&, double, double, int, stan::callbacks::logger&, stan::callbacks::writer&) const [with Model = model_continuous_namespace::model_continuous; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/algorithm:62,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:63,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/stl_algo.h:4796:25: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
4796 | std::__introselect(__first, __nth, __last,
| ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
4797 | std::__lg(__last - __first) * 2,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
4798 | __gnu_cxx::__ops::__iter_less_iter());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_continuous_namespace::model_continuous; Q = stan::variational::normal_fullrank; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'int stan::variational::advi<Model, Q, BaseRNG>::run(double, bool, int, double, int, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) const [with Model = model_continuous_namespace::model_continuous; Q = stan::variational::normal_meanfield; BaseRNG = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h:1310:2: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1310 | _M_range_insert(begin() + __offset, __l.begin(), __l.end(),
| ^~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::log_prob(SEXP, SEXP, SEXP) [with Model = model_continuous_namespace::model_continuous; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::grad_log_prob(SEXP, SEXP) [with Model = model_continuous_namespace::model_continuous; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:38,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/continuous.hpp:18,
from stan_files/continuous.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp: In function 'int stan::services::optimize::newton(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, bool, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_continuous_namespace::model_continuous]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:94:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
94 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/newton.hpp:117:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
117 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:36,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/continuous.hpp:18,
from stan_files/continuous.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp: In function 'int stan::services::optimize::bfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_continuous_namespace::model_continuous]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:98:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
98 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:154:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
154 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/bfgs.hpp:165:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
165 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/rstan/include/rstan/stan_fit.hpp:37,
from /usr/lib/R/site-library/rstan/include/rstan/rstaninc.hpp:3,
from stan_files/continuous.hpp:18,
from stan_files/continuous.cc:3:
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp: In function 'int stan::services::optimize::lbfgs(Model&, stan::io::var_context&, unsigned int, unsigned int, double, int, double, double, double, double, double, double, int, bool, int, stan::callbacks::interrupt&, stan::callbacks::logger&, stan::callbacks::writer&, stan::callbacks::writer&) [with Model = model_continuous_namespace::model_continuous]':
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:100:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
100 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:155:20: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
155 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/StanHeaders/include/src/stan/services/optimize/lbfgs.hpp:167:18: note: parameter passing for argument of type 'std::vector<double>::const_iterator' {aka '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >'} changed in GCC 7.1
167 | values.insert(values.begin(), lp);
| ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto(Eigen::VectorXd&, std::ostream*) const [with M = model_continuous_namespace::model_continuous]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/stl_vector.h: In member function 'double stan::model::model_base_crtp<M>::log_prob_propto_jacobian(Eigen::VectorXd&, std::ostream*) const [with M = model_continuous_namespace::model_continuous]':
/usr/include/c++/9/bits/stl_vector.h:1195:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
1195 | _M_realloc_insert(end(), __x);
| ^~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:187,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h: In member function 'SEXPREC* rstan::stan_fit<Model, RNG_t>::call_sampler(SEXP) [with Model = model_continuous_namespace::model_continuous; RNG_t = boost::random::additive_combine_engine<boost::random::linear_congruential_engine<unsigned int, 40014, 0, 2147483563>, boost::random::linear_congruential_engine<unsigned int, 40692, 0, 2147483399> >]':
/usr/lib/R/site-library/Rcpp/include/Rcpp/internal/wrap.h:167:71: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<const double*, std::vector<double> >' changed in GCC 7.1
167 | return primitive_range_wrap__impl__nocast<InputIterator,T>(first, last, typename std::iterator_traits<InputIterator>::iterator_category());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/9/vector:67,
from /usr/lib/R/site-library/Rcpp/include/RcppCommon.h:59,
from /usr/lib/R/site-library/Rcpp/include/Rcpp.h:27,
from stan_files/continuous.cc:1:
/usr/include/c++/9/bits/stl_vector.h:957:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double> >' changed in GCC 7.1
957 | _M_fill_insert(end(), __new_size - size(), __x);
| ^~~~~~~~~~~~~~
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"/usr/lib/R/site-library/StanHeaders/include/src" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/usr/lib/R/site-library/StanHeaders/include' -I'/usr/lib/R/site-library/rstan/include' -I'/usr/lib/R/site-library/BH/include' -I'/usr/lib/R/site-library/Rcpp/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fpic -g -O2 -fdebug-prefix-map=/build/r-base-qUFFBN/r-base-4.0.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o
g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o rstanarm.so stan_files/polr.o stan_files/jm.o stan_files/lm.o stan_files/binomial.o stan_files/bernoulli.o stan_files/count.o stan_files/mvmer.o stan_files/continuous.o init.o -L/usr/lib/R/lib -lR
rm stan_files/jm.cc stan_files/binomial.cc stan_files/lm.cc stan_files/continuous.cc stan_files/bernoulli.cc stan_files/polr.cc stan_files/count.cc stan_files/mvmer.cc
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-rstanarm/usr/lib/R/site-library/00LOCK-r-cran-rstanarm-2.19.3/00new/rstanarm/libs
** R
** data
*** moving datasets to lazyload DB
** demo
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_bernoulli" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_binomial" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_continuous" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_count" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_jm" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_lm" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_mvmer" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Rcpp_model_polr" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
** testing if installed package keeps a record of temporary installation path
* DONE (rstanarm)
W: Ignoring specified R dependency: R (>= 3.4.0)
I: Using r-cran-rcpp for Depends:Rcpp (>= 0.12.0)
I: Using r-cran-testthat for Recommends:testthat (>= 1.0.2)
I: Using r-cran-stanheaders for Recommends:stanheaders (>= 2.18.1-10-2)
I: Using r-cran-bh for Recommends:bh
I: Using r-cran-codetools for Recommends:codetools
W: Please install devscripts to enable an attempt to create debian package for Recommends:r-base-dev.
W: Cannot find a debian package for Suggests:betareg
I: Using r-cran-data.table for Suggests:data.table (>= 1.10.0)
I: Using r-cran-digest for Suggests:digest
I: Using r-cran-gridextra for Suggests:gridExtra
I: Using r-cran-hsaur3 for Suggests:HSAUR3
I: Using r-cran-knitr for Suggests:knitr (>= 1.15.1)
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-mgcv for Suggests:mgcv (>= 1.8-13)
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-roxygen2 for Suggests:roxygen2
I: Using r-cran-bayesplot for Imports:bayesplot (>= 1.7.0)
I: Using r-cran-ggplot2 for Imports:ggplot2 (>= 2.2.1)
I: Using r-cran-lme4 for Imports:lme4 (>= 1.1-8)
I: Using r-cran-loo for Imports:loo (>= 2.1.0)
I: Using r-cran-matrix for Imports:Matrix (>= 1.2-13)
I: Using r-cran-nlme for Imports:nlme (>= 3.1-124)
I: Using r-cran-rstan for Imports:rstan (>= 2.19.1)
I: Using r-cran-rstantools for Imports:rstantools (>= 2.0.0)
I: Using r-cran-shinystan for Imports:shinystan (>= 2.3.0)
I: Using r-cran-survival for Imports:survival (>= 2.40.1)
I: Using r-cran-rcppparallel for Imports:RcppParallel
I: Using r-cran-stanheaders for LinkingTo:StanHeaders (>= 2.19.0)
I: Using r-cran-rstan for LinkingTo:rstan (>= 2.19.1)
I: Using r-cran-bh for LinkingTo:BH (>= 1.66.0)
I: Using r-cran-rcpp for LinkingTo:Rcpp (>= 0.12.0)
I: Using r-cran-rcppeigen for LinkingTo:RcppEigen (>= 0.3.3.3.0)
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-rstanarm-dbgsym' in '../r-cran-rstanarm-dbgsym_2.19.3-1+b1_armhf.deb'.
dpkg-deb: building package 'r-cran-rstanarm' in '../r-cran-rstanarm_2.19.3-1+b1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-cran-rstanarm_2.19.3-1+b1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-05-31T19:38:23Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-rstanarm_2.19.3-1+b1_armhf.changes:
------------------------------------------
Format: 1.8
Date: Wed, 15 Apr 2020 14:04:02 +0200
Source: r-cran-rstanarm (2.19.3-1)
Binary: r-cran-rstanarm r-cran-rstanarm-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 2.19.3-1+b1
Distribution: bullseye-staging
Urgency: low
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Raspbian wandboard test autobuilder <root@raspbian.org>
Description:
r-cran-rstanarm - GNU R bayesian applied regression modeling via stan
Changes:
r-cran-rstanarm (2.19.3-1+b1) bullseye-staging; urgency=low, binary-only=yes
.
* Binary-only non-maintainer upload for armhf; no source changes.
* rebuild due to debcheck failure
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-rstanarm-dbgsym_2.19.3-1+b1_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 73797728 bytes: control archive=552 bytes.
417 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-rstanarm-dbgsym
Source: r-cran-rstanarm (2.19.3-1)
Version: 2.19.3-1+b1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 74986
Depends: r-cran-rstanarm (= 2.19.3-1+b1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-rstanarm
Build-Ids: 3cdc8ca7dd49ab7a95e1c5baa9499cb2281de754
drwxr-xr-x root/root 0 2020-04-15 12:04 ./
drwxr-xr-x root/root 0 2020-04-15 12:04 ./usr/
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lrwxrwxrwx root/root 0 2020-04-15 12:04 ./usr/share/doc/r-cran-rstanarm-dbgsym -> r-cran-rstanarm
r-cran-rstanarm_2.19.3-1+b1_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 6486320 bytes: control archive=5960 bytes.
1384 bytes, 17 lines control
19172 bytes, 200 lines md5sums
Package: r-cran-rstanarm
Source: r-cran-rstanarm (2.19.3-1)
Version: 2.19.3-1+b1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 15696
Depends: r-base-core (>= 4.0.0-3), r-api-4.0, r-cran-rcpp (>= 0.12.0), r-cran-bayesplot (>= 1.7.0), r-cran-ggplot2 (>= 2.2.1), r-cran-lme4 (>= 1.1-8), r-cran-loo (>= 2.1.0), r-cran-matrix (>= 1.2-13), r-cran-nlme (>= 3.1-124), r-cran-rstan (>= 2.19.1), r-cran-rstantools (>= 2.0.0), r-cran-shinystan (>= 2.3.0), r-cran-survival (>= 2.40.1), r-cran-rcppparallel, r-cran-stanheaders (>= 2.19.0), r-cran-bh (>= 1.66.0), r-cran-rcppeigen (>= 0.3.3.3.0), libc6 (>= 2.29), libgcc-s1 (>= 3.5), libstdc++6 (>= 9)
Recommends: r-cran-testthat (>= 1.0.2), r-cran-codetools
Suggests: r-cran-data.table (>= 1.10.0), r-cran-digest, r-cran-gridextra, r-cran-hsaur3, r-cran-knitr (>= 1.15.1), r-cran-mass, r-cran-mgcv (>= 1.8-13), r-cran-rmarkdown, r-cran-roxygen2
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=rstanarm
Description: GNU R bayesian applied regression modeling via stan
Estimates previously compiled regression models using the 'rstan'
package, which provides the R interface to the Stan C++ library for Bayesian
estimation. Users specify models via the customary R syntax with a formula and
data.frame plus some additional arguments for priors.
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 113384
Build-Time: 17762
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1311
Job: r-cran-rstanarm_2.19.3-1
Machine Architecture: armhf
Package: r-cran-rstanarm
Package-Time: 19124
Source-Version: 2.19.3-1
Space: 113384
Status: successful
Version: 2.19.3-1+b1
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Finished at 2020-05-31T19:38:23Z
Build needed 05:18:44, 113384k disc space