r-cran-glmmtmb →
1.1.8+dfsg-3 →
armhf → 2023-12-26 06:00:19
sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023
+==============================================================================+
| r-cran-glmmtmb 1.1.8+dfsg-3 (armhf) Tue, 26 Dec 2023 05:56:07 +0000 |
+==============================================================================+
Package: r-cran-glmmtmb
Version: 1.1.8+dfsg-3
Source Version: 1.1.8+dfsg-3
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-3199164d-55df-46fe-9d95-0a2b1d6a068a' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-x53QRA/resolver-9VN8LR' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.3 MB in 5s (5573 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-glmmtmb' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3765 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-cran-glmmtmb 1.1.8+dfsg-3 (dsc) [2573 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-cran-glmmtmb 1.1.8+dfsg-3 (tar) [3747 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-cran-glmmtmb 1.1.8+dfsg-3 (diff) [15.1 kB]
Fetched 3765 kB in 1s (7520 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-x53QRA/r-cran-glmmtmb-1.1.8+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-x53QRA' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-tmb (>= 1.9.0), r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-mgcv, r-cran-rcppeigen, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-tmb (>= 1.9.0), r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-mgcv, r-cran-rcppeigen, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [747 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [779 B]
Fetched 2135 B in 0s (0 B/s)
Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libnlopt0 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3
libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1 libsharpyuv0 libsm6
libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6
libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-cran-boot r-cran-brio r-cran-callr
r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest
r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue
r-cran-jsonlite r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-lme4
r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-minqa
r-cran-nlme r-cran-nloptr r-cran-numderiv r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps
r-cran-r6 r-cran-rcpp r-cran-rcppeigen r-cran-rematch2 r-cran-rlang
r-cran-rprojroot r-cran-statmod r-cran-testthat r-cran-tibble r-cran-tmb
r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr sensible-utils ucf unzip
x11-common xauth xdg-utils zip zlib1g zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-13-doc libcoarrays-dev groff liblapack-doc
low-memory-monitor icu-doc liblzma-doc ncurses-doc libscalar-number-perl
readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-cran-covr
r-cran-spelling r-cran-rstudioapi r-cran-knitr r-cran-rmarkdown r-cran-dbi
r-cran-dplyr r-cran-forcats r-cran-ggplot2 r-cran-r.utils r-cran-rsqlite
r-cran-stringr r-cran-getopt r-cran-bit64 r-cran-formattable r-cran-nanotime
r-cran-palmerpenguins r-cran-scales r-cran-stringi r-cran-survival
r-cran-units r-cran-vdiffr r-cran-inline r-cran-bench r-cran-blob
r-cran-here r-cran-hms r-cran-htmltools r-cran-pkgbuild r-cran-purrr
r-cran-tidyr
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-covr r-cran-cliapp
r-cran-mockery r-cran-htmltools r-cran-htmlwidgets r-cran-knitr
r-cran-rmarkdown r-cran-rstudioapi r-cran-whoami r-cran-gh r-cran-spelling
r-cran-ggplot2 r-cran-unitizer r-cran-httr r-cran-r.rsp r-cran-sf
r-cran-lintr r-cran-tidyverse r-cran-lubridate r-cran-bitops r-cran-mathjaxr
r-cran-mockr r-cran-pkgbuild r-cran-remotes r-cran-codetools r-cran-curl
r-cran-webfakes r-cran-pingr r-cran-usethis r-cran-shiny r-cran-xml2
r-cran-data.table r-cran-rsqlite r-cran-dplyr r-cran-formattable
r-cran-bit64 r-cran-generics r-cran-pkgdown r-cran-zeallot r-cran-dbi
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libnlopt0 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3
libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1 libsharpyuv0 libsm6
libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6
libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-cran-boot r-cran-brio r-cran-callr
r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest
r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue
r-cran-jsonlite r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-lme4
r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-minqa
r-cran-nlme r-cran-nloptr r-cran-numderiv r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps
r-cran-r6 r-cran-rcpp r-cran-rcppeigen r-cran-rematch2 r-cran-rlang
r-cran-rprojroot r-cran-statmod r-cran-testthat r-cran-tibble r-cran-tmb
r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr
sbuild-build-depends-main-dummy sensible-utils ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 218 newly installed, 0 to remove and 1 not upgraded.
Need to get 124 MB of archives.
After this operation, 334 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf zlib1g armhf 1:1.3.dfsg-3 [74.3 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-2 [81.2 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.1.4-2 [1375 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.9 [82.3 kB]
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Get:34 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.9 [956 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:41 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
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Get:62 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
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Get:66 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-3 [195 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.4.0-2+rpi1 [362 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.3-1 [1256 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-7+rpi1 [247 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-3 [188 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-3 [40.3 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-3 [30.5 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-4 [132 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-3 [299 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.2-1 [26.4 MB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-7+rpi1 [293 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-7+rpi1 [7839 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:13.2.0-1+rpi1 [1424 B]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20231209-1 [80.5 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20231209-1 [290 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-3 [124 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.3.dfsg-3 [903 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-2 [336 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.1 [278 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.2-1 [4504 B]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.45-1 [82.0 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.4.0-2+rpi1 [358 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20231212 [42.2 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libnlopt0 armhf 2.7.1-5+b1 [139 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libuv1 armhf 1.46.0-2+rpi1 [128 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.19-1 [88.0 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf littler all 0.3.19-1 [15.4 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf r-cran-boot all 1.3-28.1-1 [620 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf r-cran-brio armhf 1.1.4-1 [36.3 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf r-cran-ps armhf 1.7.5-2 [306 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf r-cran-processx armhf 3.8.3-1 [332 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf r-cran-callr all 3.7.3-2 [426 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf r-cran-cli armhf 3.6.2-1 [1327 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf r-cran-desc all 1.4.3-1 [351 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf r-cran-diffobj armhf 0.3.5-1 [1111 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf r-cran-digest armhf 0.6.33-1 [185 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf r-cran-rlang armhf 1.1.2-1 [1654 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf r-cran-evaluate all 0.23-1 [90.6 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf r-cran-fansi armhf 1.0.5-1 [611 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf r-cran-fs armhf 1.6.3+dfsg-1 [224 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf r-cran-jsonlite armhf 1.8.8+dfsg-1 [438 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-4-1 [3691 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf r-cran-mass armhf 7.3-60-2 [1114 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf r-cran-nlme armhf 3.1.164-1 [2267 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgkitten all 0.2.3-1 [26.7 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcpp armhf 1.0.11-1 [2043 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-cran-minqa armhf 1.2.6-1 [100 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-cran-rprojroot all 2.0.4-1 [124 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgload all 1.3.2.1-1 [206 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-cran-praise all 1.0.0-4 [20.1 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf r-cran-utf8 armhf 1.2.4-1 [129 kB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf r-cran-vctrs armhf 0.6.5-1 [1339 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf r-cran-pillar all 1.9.0+dfsg-1 [463 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:209 http://172.17.4.1/private trixie-staging/main armhf r-cran-tibble armhf 3.2.1+dfsg-2 [422 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf r-cran-rematch2 all 2.1.2-2 [46.3 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf r-cran-waldo all 0.5.2-1 [120 kB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf r-cran-testthat armhf 3.2.0-1 [1618 kB]
Get:213 http://172.17.4.1/private trixie-staging/main armhf r-cran-nloptr armhf 2.0.3-1 [351 kB]
Get:214 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcppeigen armhf 0.3.3.9.4-1 [1150 kB]
Get:215 http://172.17.4.1/private trixie-staging/main armhf r-cran-statmod armhf 1.5.0-1 [295 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf r-cran-lme4 armhf 1.1-35.1-4 [4088 kB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf r-cran-mgcv armhf 1.9-0-1 [3196 kB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf r-cran-numderiv all 2016.8-1.1-3 [115 kB]
Get:219 http://172.17.4.1/private trixie-staging/main armhf r-cran-tmb armhf 1.9.10-1 [1025 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Unpacking gettext-base (0.21-14) ...
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invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
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Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20231209-1) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-14) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-2) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (8.4.0-2+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up gfortran-13 (13.2.0-7+rpi1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up ucf (3.0043+nmu1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libcurl4:armhf (8.4.0-2+rpi1) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.45-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up libpaper-utils (1.1.29) ...
Setting up man-db (2.12.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:13.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up debhelper (13.11.9) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up r-base-core (4.3.2-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-lattice (0.22-5-1) ...
Setting up r-cran-ps (1.7.5-2) ...
Setting up r-cran-nlme (3.1.164-1) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up r-cran-statmod (1.5.0-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.3-1) ...
Setting up r-cran-numderiv (2016.8-1.1-3) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-littler (0.3.19-1) ...
Setting up r-cran-fs (1.6.3+dfsg-1) ...
Setting up r-cran-rcpp (1.0.11-1) ...
Setting up r-cran-brio (1.1.4-1) ...
Setting up r-cran-boot (1.3-28.1-1) ...
Setting up r-cran-diffobj (0.3.5-1) ...
Setting up r-cran-rlang (1.1.2-1) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up littler (0.3.19-1) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-processx (3.8.3-1) ...
Setting up r-cran-praise (1.0.0-4) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up r-cran-digest (0.6.33-1) ...
Setting up r-cran-evaluate (0.23-1) ...
Setting up r-cran-fansi (1.0.5-1) ...
Setting up r-cran-mass (7.3-60-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-cli (3.6.2-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-rprojroot (2.0.4-1) ...
Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.4-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-cran-matrix (1.6-4-1) ...
Setting up r-cran-mgcv (1.9-0-1) ...
Setting up r-cran-vctrs (0.6.5-1) ...
Setting up r-cran-rcppeigen (0.3.3.9.4-1) ...
Setting up r-cran-pillar (1.9.0+dfsg-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-minqa (1.2.6-1) ...
Setting up r-cran-callr (3.7.3-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-cran-desc (1.4.3-1) ...
Setting up r-cran-tibble (3.2.1+dfsg-2) ...
Setting up r-cran-tmb (1.9.10-1) ...
Setting up dh-r (20231212) ...
Setting up r-cran-pkgload (1.3.2.1-1) ...
Setting up r-cran-rematch2 (2.1.2-2) ...
Setting up r-cran-waldo (0.5.2-1) ...
Setting up r-cran-testthat (3.2.0-1) ...
Setting up r-cran-nloptr (2.0.3-1) ...
Setting up r-cran-lme4 (1.1-35.1-4) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep 1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-7+rpi1 gcc-12_12.3.0-13+rpi1 gcc-13_13.2.0-7+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-2 bsdutils_1:2.39.3-2 build-essential_12.10 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-13+rpi1 cpp-13_13.2.0-7+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.9 debianutils_5.14 dh-autoreconf_20 dh-r_20231212 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.2-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-13+rpi1 g++-13_13.2.0-7+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-13+rpi1 gcc-12-base_12.3.0-13+rpi1 gcc-13_13.2.0-7+rpi1 gcc-13-base_13.2.0-7+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-14 gettext-base_0.21-14 gfortran_4:13.2.0-1+rpi1 gfortran-13_13.2.0-7+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-4 init-system-helpers_1.66 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-7+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-7+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.2-1 libaudit1_1:3.1.2-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.3-2 libbrotli1_1.1.0-2 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcairo2_1.18.0-1 libcap-ng0_0.8.3-3 libcap2_1:2.66-4 libcc1-0_13.2.0-7+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.4.0-2+rpi1 libcurl4_8.4.0-2+rpi1 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg2-4 libdebconfclient0_0.271 libdebhelper-perl_13.11.9 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.22.1+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.2-1 libffi8_3.4.4-2 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.2-6 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.3.0-13+rpi1 libgcc-13-dev_13.2.0-7+rpi1 libgcc-s1_13.2.0-7+rpi1 libgcrypt20_1.10.3-2 libgdbm-compat4_1.23-5 libgdbm6_1.23-5 libgfortran-13-dev_13.2.0-7+rpi1 libgfortran5_13.2.0-7+rpi1 libglib2.0-0_2.78.3-1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.2-1 libgomp1_13.2.0-7+rpi1 libgpg-error0_1.47-3 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-5 libharfbuzz0b_8.0.1-1 libhogweed6_3.9.1-2 libhttp-date-perl_6.06-1 libhttp-message-perl_6.45-1 libice6_2:1.0.10-1 libicu-dev_72.1-4 libicu72_72.1-4 libidn2-0_2.3.4-1 libio-html-perl_1.004-3 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg-dev_1:2.1.5-2 libjpeg62-turbo_1:2.1.5-2 libjpeg62-turbo-dev_1:2.1.5-2 libk5crypto3_1.20.1-5 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-5 libkrb5support0_1.20.1-5 libksba8_1.6.5-2 liblapack-dev_3.11.0-2 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libpangocairo-1.0-0_1.51.0+ds-3 libpangoft2-1.0-0_1.51.0+ds-3 libpaper-utils_1.1.29 libpaper1_1.1.29 libparams-classify-perl_0.015-2+b1 libparams-util-perl_1.102-2+b1 libpcre2-16-0_10.42-4 libpcre2-32-0_10.42-4 libpcre2-8-0_10.42-4 libpcre2-dev_10.42-4 libpcre2-posix3_10.42-4 libperl5.36_5.36.0-10 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-1 libpng-dev_1.6.40-2 libpng16-16_1.6.40-2 libpsl5_0.21.2-1+b1 libreadline-dev_8.2-3 libreadline8_8.2-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-4 libsasl2-modules-db_2.1.28+dfsg1-4 libseccomp2_2.5.4-2+rpi1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-2 libsframe1_2.41-6+rpi1 libsharpyuv0_1.3.2-0.3 libsm6_2:1.2.3-1 libsmartcols1_2.39.3-2 libsqlite3-0_3.44.2-1 libss2_1.47.0-2 libssh2-1_1.11.0-3 libssl3_3.1.4-2 libstdc++-12-dev_12.3.0-13+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 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libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1.1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.5.6-1+rpi1 littler_0.3.19-1 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 mount_2.39.3-2 nano_7.2-1 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 openssl_3.1.4-2 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-10 perl-base_5.36.0-10 perl-modules-5.36_5.36.0-10 pinentry-curses_1.2.1-3 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 r-base-core_4.3.2-1 r-base-dev_4.3.2-1 r-cran-boot_1.3-28.1-1 r-cran-brio_1.1.4-1 r-cran-callr_3.7.3-2 r-cran-cli_3.6.2-1 r-cran-crayon_1.5.2-1 r-cran-desc_1.4.3-1 r-cran-diffobj_0.3.5-1 r-cran-digest_0.6.33-1 r-cran-ellipsis_0.3.2-2 r-cran-evaluate_0.23-1 r-cran-fansi_1.0.5-1 r-cran-fs_1.6.3+dfsg-1 r-cran-glue_1.6.2-1 r-cran-jsonlite_1.8.8+dfsg-1 r-cran-lattice_0.22-5-1 r-cran-lifecycle_1.0.4+dfsg-1 r-cran-littler_0.3.19-1 r-cran-lme4_1.1-35.1-4 r-cran-magrittr_2.0.3-1 r-cran-mass_7.3-60-2 r-cran-matrix_1.6-4-1 r-cran-mgcv_1.9-0-1 r-cran-minqa_1.2.6-1 r-cran-nlme_3.1.164-1 r-cran-nloptr_2.0.3-1 r-cran-numderiv_2016.8-1.1-3 r-cran-pillar_1.9.0+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.3-1 r-cran-pkgload_1.3.2.1-1 r-cran-praise_1.0.0-4 r-cran-processx_3.8.3-1 r-cran-ps_1.7.5-2 r-cran-r6_2.5.1-1 r-cran-rcpp_1.0.11-1 r-cran-rcppeigen_0.3.3.9.4-1 r-cran-rematch2_2.1.2-2 r-cran-rlang_1.1.2-1 r-cran-rprojroot_2.0.4-1 r-cran-statmod_1.5.0-1 r-cran-testthat_3.2.0-1 r-cran-tibble_3.2.1+dfsg-2 r-cran-tmb_1.9.10-1 r-cran-utf8_1.2.4-1 r-cran-vctrs_0.6.5-1 r-cran-waldo_0.5.2-1 r-cran-withr_2.5.0-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.34+dfsg-1.3 tzdata_2023c-11 ucf_3.0043+nmu1 unzip_6.0-28 usr-is-merged_38 usrmerge_38 util-linux_2.39.3-2 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.5-0.1 zip_3.0-13 zlib1g_1:1.3.dfsg-3 zlib1g-dev_1:1.3.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb
Architecture: any
Version: 1.1.8+dfsg-3
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://cran.r-project.org/package=glmmTMB
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
Testsuite: autopkgtest, autopkgtest-pkg-r
Testsuite-Triggers: r-cran-bbmle, r-cran-boot, r-cran-broom, r-cran-broom.mixed, r-cran-car, r-cran-coda, r-cran-effects, r-cran-emmeans, r-cran-estimability, r-cran-ggplot2, r-cran-knitr, r-cran-lattice, r-cran-mass, r-cran-mlmrev, r-cran-multcomp, r-cran-plyr, r-cran-png, r-cran-pscl, r-cran-reshape2, r-cran-rmarkdown, r-cran-testthat, r-cran-xtable
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-tmb (>= 1.9.0), r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-mgcv, r-cran-rcppeigen
Package-List:
r-cran-glmmtmb deb gnu-r optional arch=any
Checksums-Sha1:
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Checksums-Sha256:
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6161ebd8b184062fb62fa78c2a226a0fbb18afb10f069fdce9a5917cea6dde04 15100 r-cran-glmmtmb_1.1.8+dfsg-3.debian.tar.xz
Files:
0b816d141cbc80ee912c07c64e888ac8 3746844 r-cran-glmmtmb_1.1.8+dfsg.orig.tar.xz
977397db0a7978bf6471868c15cdf79d 15100 r-cran-glmmtmb_1.1.8+dfsg-3.debian.tar.xz
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gpgv: Signature made Sat Dec 23 17:03:35 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-cran-glmmtmb_1.1.8+dfsg-3.dsc: no acceptable signature found
dpkg-source: info: extracting r-cran-glmmtmb in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-glmmtmb_1.1.8+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-cran-glmmtmb_1.1.8+dfsg-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-autopkgtest.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-3199164d-55df-46fe-9d95-0a2b1d6a068a
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-cran-glmmtmb
dpkg-buildpackage: info: source version 1.1.8+dfsg-3
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-glmmtmb/ -a -O--buildsystem=R
I: R packages needed for DEP8: glmmtmb
I: R Package: glmmTMB Version: 1.1.8
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Sat, 23 Dec 2023 17:54:56 +0100
mkdir -p /<<BUILDDIR>>/r-cran-glmmtmb-1.1.8\+dfsg/debian/r-cran-glmmtmb/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-cran-glmmtmb-1.1.8\+dfsg/debian/r-cran-glmmtmb/usr/lib/R/site-library --clean . "--built-timestamp='Sat, 23 Dec 2023 17:54:56 +0100'"
* installing *source* package ‘glmmTMB’ ...
files ‘inst/doc/covstruct.html’, ‘inst/doc/hacking.html’, ‘inst/doc/mcmc.html’, ‘inst/doc/miscEx.html’, ‘inst/doc/parallel.html’, ‘inst/doc/sim.html’, ‘inst/doc/troubleshooting.html’ are missing
file ‘DESCRIPTION’ has the wrong MD5 checksum
** using staged installation
** libs
using C++ compiler: ‘g++ (Raspbian 13.2.0-7+rpi1) 13.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/usr/lib/R/site-library/TMB/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c glmmTMB.cpp -o glmmTMB.o
In file included from /usr/include/c++/13/vector:72,
from /usr/include/c++/13/functional:64,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:281,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:88,
from glmmTMB.cpp:1:
/usr/include/c++/13/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’:
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘std::vector<TMBad::global::ad_aug>::iterator’ changed in GCC 7.1
751 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘TMBad::global::ad_plain TMBad::global::add_to_stack(TMBad::Scalar) [with OperatorBase = InvOp]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2452:27,
inlined from ‘void TMBad::global::ad_plain::Independent()’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:2051:42:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘TMBad::global TMBad::global::extract_sub(std::vector<unsigned int>&, TMBad::global)’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:1287:32:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘TMBad::global::ad_plain TMBad::global::add_to_stack(TMBad::Scalar) [with OperatorBase = ConstOp]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2452:27,
inlined from ‘TMBad::global::ad_plain::ad_plain(TMBad::Scalar)’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:1960:44:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/lib/R/site-library/TMB/include/atomic_math.hpp:158,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:196:
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In function ‘void atomic::pnorm1Op<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
139 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:209:1: note: in expansion of macro ‘TMB_ATOMIC_STATIC_FUNCTION’
209 | TMB_ATOMIC_STATIC_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:5,
from /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:4,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:119:
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::pnorm1Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::pnorm1Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::pnorm1Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from ‘void TMBad::global::AddForwardReverse<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::Rep<atomic::pnorm1Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1683:33,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::pnorm1Op<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::pnorm1Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::pnorm1Op<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {TMBad::global::ad_aug}; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<TMBad::global::ad_aug>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {TMBad::global::ad_aug}; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
inlined from ‘std::vector<TMBad::global::ad_aug> TMBad::concat(const std::vector<global::ad_segment>&)’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:4670:20:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<double, std::allocator<double> > TMBad::ADFun<ad>::Jacobian(const std::vector<double, std::allocator<double> >&, std::vector<bool>, std::vector<bool>) [with ad = TMBad::global::ad_aug]’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:532:22:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Eigen::Triplet<TMBad::global::ad_aug, int>}; _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<Eigen::Triplet<TMBad::global::ad_aug, int>, std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> > >::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<TMBad::global::ad_aug, int>}; _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Triplet<TMBad::global::ad_aug, int>*, std::vector<Eigen::Triplet<TMBad::global::ad_aug, int>, std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > >::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >’ changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = TMBad::global::ad_aug; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:543:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = TMBad::global::ad_aug; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:544:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const TMBad::global::ad_aug&}; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<TMBad::global::ad_aug>::iterator’ changed in GCC 7.1
445 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘std::vector<T> TMBad::subset(const std::vector<T>&, const std::vector<bool>&) [with T = global::ad_aug]’ at /usr/lib/R/site-library/TMB/include/TMBad/graph_transform.hpp:44:28:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1289 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp: In constructor ‘TMBad::ADFun<ad>::ADFun(Functor, const ScalarVector&) [with Functor = TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >; ScalarVector = newton::vector<TMBad::global::ad_aug>; ad = TMBad::global::ad_aug]’:
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:122:3: note: parameter passing for argument of type ‘TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
122 | ADFun(Functor F, const ScalarVector &x_) : force_update_flag(false) {
| ^~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘newton::vector<TMBad::global::ad_aug> newton::NewtonOperator<Functor, Hessian_Type>::add_to_tape() [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:844:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘newton::vector<TMBad::global::ad_aug> newton::NewtonOperator<Functor, Hessian_Type>::add_to_tape() [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:844:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘newton::vector<TMBad::global::ad_aug> newton::NewtonOperator<Functor, Hessian_Type>::add_to_tape() [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:844:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In file included from /usr/lib/R/site-library/TMB/include/TMB.hpp:206:
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp: In constructor ‘newton::NewtonOperator<Functor, Hessian_Type>::NewtonOperator(Functor&, newton::vector<TMBad::global::ad_aug>, newton::newton_config) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]’:
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:786:23: note: parameter passing for argument of type ‘newton::NewtonOperator<newton::slice<>, newton::jacobian_dense_t<> >::FunctorExtend’ {aka ‘TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >’} changed in GCC 7.1
786 | function = TMBad::ADFun<> ( FunctorExtend(F), start);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘TMBad::Decomp3<ADFun> TMBad::Decomp2<ADFun>::HesFun(std::vector<bool>, bool, bool, bool) [with ADFun = TMBad::ADFun<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1315:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘TMBad::Decomp3<ADFun> TMBad::Decomp2<ADFun>::HesFun(std::vector<bool>, bool, bool, bool) [with ADFun = TMBad::ADFun<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1317:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘TMBad::Decomp3<ADFun> TMBad::Decomp2<ADFun>::HesFun(std::vector<bool>, bool, bool, bool) [with ADFun = TMBad::ADFun<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1328:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘TMBad::Decomp3<ADFun> TMBad::Decomp2<ADFun>::HesFun(std::vector<bool>, bool, bool, bool) [with ADFun = TMBad::ADFun<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1362:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp: In constructor ‘newton::NewtonOperator<Functor, Hessian_Type>::NewtonOperator(Functor&, newton::vector<TMBad::global::ad_aug>, newton::newton_config) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]’:
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:786:23: note: parameter passing for argument of type ‘newton::NewtonOperator<newton::slice<>, newton::jacobian_sparse_t<> >::FunctorExtend’ {aka ‘TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >’} changed in GCC 7.1
786 | function = TMBad::ADFun<> ( FunctorExtend(F), start);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp: In constructor ‘newton::NewtonOperator<Functor, Hessian_Type>::NewtonOperator(Functor&, newton::vector<TMBad::global::ad_aug>, newton::newton_config) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’:
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:786:23: note: parameter passing for argument of type ‘newton::NewtonOperator<newton::slice<>, newton::jacobian_sparse_plus_lowrank_t<> >::FunctorExtend’ {aka ‘TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >’} changed in GCC 7.1
786 | function = TMBad::ADFun<> ( FunctorExtend(F), start);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::matmulOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:435:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
435 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::matmulOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:435:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
435 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::invpdOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:528:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
528 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::logdetOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:503:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
503 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
distrib.h: In member function ‘void glmmtmb::logit_invcloglogOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
distrib.h:196:3: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
196 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
distrib.h: In member function ‘void glmmtmb::logit_invcloglogOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
distrib.h:196:3: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
196 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
distrib.h: In member function ‘void glmmtmb::logit_pnormOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
distrib.h:227:3: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
227 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
distrib.h: In member function ‘void glmmtmb::logit_pnormOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
distrib.h:227:3: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
227 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In function ‘void atomic::bessel_k_10Op<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
139 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:368:1: note: in expansion of macro ‘TMB_ATOMIC_STATIC_FUNCTION’
368 | TMB_ATOMIC_STATIC_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::bessel_k_10Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::bessel_k_10Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::bessel_k_10Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from ‘void TMBad::global::AddForwardReverse<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::Rep<atomic::bessel_k_10Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1683:33,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::bessel_k_10Op<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::bessel_k_10Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::bessel_k_10Op<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = TMBad::global::ad_aug; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1028:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:543:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:544:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In function ‘void atomic::D_lgammaOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
139 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:317:1: note: in expansion of macro ‘TMB_ATOMIC_STATIC_FUNCTION’
317 | TMB_ATOMIC_STATIC_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::D_lgammaOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::D_lgammaOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::D_lgammaOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from ‘void TMBad::global::AddForwardReverse<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::Rep<atomic::D_lgammaOp<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1683:33,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::D_lgammaOp<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::D_lgammaOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::D_lgammaOp<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = TMBad::global::ad_aug; Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1028:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::logdetOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:503:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
503 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = TMBad::global::ad_aug; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1028:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::invpdOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:528:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
528 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::retaping_derivative_table<TMBad::logIntegrate_t<>, TMBad::ADFun<>, TMBad::ParametersChanged, false>]’ at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:218:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::retaping_derivative_table<TMBad::logIntegrate_t<>, TMBad::ADFun<>, TMBad::ParametersChanged, false>]’ at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:219:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::standard_derivative_table<TMBad::ADFun<>, false>]’ at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:218:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
inlined from ‘void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::standard_derivative_table<TMBad::ADFun<>, false>]’ at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:219:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = double; Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1028:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = double; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1028:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = double; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1028:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:543:15,
inlined from ‘newton::jacobian_sparse_plus_lowrank_t<dummy>::sparse_plus_lowrank<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::operator()(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:549:29,
inlined from ‘const char* newton::NewtonOperator<Functor, Hessian_Type>::newton_iterate(newton::vector<double>&) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:918:9,
inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::forward(TMBad::ForwardArgs<double>&) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1014:19:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:544:15,
inlined from ‘newton::jacobian_sparse_plus_lowrank_t<dummy>::sparse_plus_lowrank<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::operator()(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:549:29,
inlined from ‘const char* newton::NewtonOperator<Functor, Hessian_Type>::newton_iterate(newton::vector<double>&) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:918:9,
inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::forward(TMBad::ForwardArgs<double>&) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1014:19:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
1483 | _M_range_insert(begin() + __offset, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
1484 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::matinvOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:473:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
473 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::matinvOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE( \
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:473:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
473 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]’,
inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]’,
inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/usr/lib/R/site-library/TMB/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.cpp -o utils.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o glmmTMB.so glmmTMB.o utils.o -fopenmp -L/usr/lib/R/lib -lR
"/usr/lib/R/bin/Rscript" -e "cat(as.character(packageVersion('TMB')), '\n', sep="", file='../inst/TMB-version')"
"/usr/lib/R/bin/Rscript" -e "cat(as.character(packageVersion('Matrix')), '\n', sep="", file='../inst/Matrix-version')"
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-glmmtmb/usr/lib/R/site-library/00LOCK-r-cran-glmmtmb-1.1.8+dfsg/00new/glmmTMB/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glmmTMB)
W: Ignoring specified R dependency: R (>= 3.2.0)
I: Using r-cran-glmmtmb for Recommends:glmmtmb
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-lattice for Suggests:lattice
I: Using r-cran-ggplot2 for Suggests:ggplot2 (>= 2.2.1)
I: Using r-cran-mlmrev for Suggests:mlmRev
I: Using r-cran-bbmle for Suggests:bbmle (>= 1.0.19)
I: Using r-cran-pscl for Suggests:pscl
I: Using r-cran-coda for Suggests:coda
I: Using r-cran-reshape2 for Suggests:reshape2
I: Using r-cran-car for Suggests:car (>= 3.0.6)
I: Using r-cran-emmeans for Suggests:emmeans (>= 1.4)
I: Using r-cran-estimability for Suggests:estimability
W: Cannot find a debian package for Suggests:DHARMa
I: Using r-cran-multcomp for Suggests:multcomp
W: Cannot find a debian package for Suggests:MuMIn
I: Using r-cran-effects for Suggests:effects (>= 4.0-1)
W: Cannot find a debian package for Suggests:dotwhisker
I: Using r-cran-broom for Suggests:broom
I: Using r-cran-broom.mixed for Suggests:broom.mixed
I: Using r-cran-plyr for Suggests:plyr
I: Using r-cran-png for Suggests:png
I: Using r-cran-boot for Suggests:boot
W: Cannot find a debian package for Suggests:texreg
I: Using r-cran-xtable for Suggests:xtable
W: Cannot find a debian package for Suggests:huxtable
W: Cannot find a debian package for Suggests:mvabund
I: Version replacement between package version 1.1-18.9000 and Debian version 1.1-35.1-4
suspicious. Do not replace anything.
I: Using r-cran-lme4 by changing version to (>= 1.1-18.9000) for Imports:lme4 (>= 1.1-18.9000)
I: Using r-cran-matrix by changing version to for Imports:Matrix
I: Using r-cran-nlme for Imports:nlme
I: Using r-cran-numderiv for Imports:numDeriv
I: Using r-cran-mgcv for Imports:mgcv
I: Using r-cran-tmb for LinkingTo:TMB
I: Using r-cran-rcppeigen for LinkingTo:RcppEigen
I: Use r-cran-glmmtmb as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
debian/rules override_dh_gencontrol
make[1]: Entering directory '/<<PKGBUILDDIR>>'
tmbversion=`dpkg -l r-cran-tmb | grep 'ii' | sed 's/^.*r-cran-tmb[[:space:]]\+\([0-9.-]\+\)[[:space:]]\+.*/\1/'`; \
sed -i "s/r-cran-tmb[^,]*/r-cran-tmb (>= ${tmbversion})/" debian/*substvars
dh_gencontrol
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-glmmtmb-dbgsym' in '../r-cran-glmmtmb-dbgsym_1.1.8+dfsg-3_armhf.deb'.
dpkg-deb: building package 'r-cran-glmmtmb' in '../r-cran-glmmtmb_1.1.8+dfsg-3_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-cran-glmmtmb_1.1.8+dfsg-3_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../r-cran-glmmtmb_1.1.8+dfsg-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-12-26T06:00:17Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-glmmtmb_1.1.8+dfsg-3_armhf.changes:
------------------------------------------
Format: 1.8
Date: Sat, 23 Dec 2023 17:54:56 +0100
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb r-cran-glmmtmb-dbgsym
Architecture: armhf
Version: 1.1.8+dfsg-3
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-glmmtmb - Generalized Linear Mixed Models using Template Model Builder
Changes:
r-cran-glmmtmb (1.1.8+dfsg-3) unstable; urgency=medium
.
* Rebuild against new version of r-cran-tmb
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Files:
f731bef594d0a126b4c01b09af54a39c 3190020 debug optional r-cran-glmmtmb-dbgsym_1.1.8+dfsg-3_armhf.deb
e0c2b4c321665bb209ceaf98fc8ad326 11346 gnu-r optional r-cran-glmmtmb_1.1.8+dfsg-3_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb r-cran-glmmtmb-dbgsym
Architecture: armhf
Version: 1.1.8+dfsg-3
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Tue, 26 Dec 2023 06:00:16 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
merged-usr-via-aliased-dirs
Installed-Build-Depends:
autoconf (= 2.71-3),
automake (= 1:1.16.5-1.3),
autopoint (= 0.21-14),
autotools-dev (= 20220109.1),
base-files (= 13+rpi1),
base-passwd (= 3.6.3),
bash (= 5.2.21-2),
binutils (= 2.41-6+rpi1),
binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
binutils-common (= 2.41-6+rpi1),
bsdextrautils (= 2.39.3-2),
bsdutils (= 1:2.39.3-2),
build-essential (= 12.10),
bzip2 (= 1.0.8-5+b2),
ca-certificates (= 20230311),
coreutils (= 9.1-1),
cpp (= 4:13.2.0-1+rpi1),
cpp-12 (= 12.3.0-13+rpi1),
cpp-13 (= 13.2.0-7+rpi1),
dash (= 0.5.12-6),
dctrl-tools (= 2.24-3),
debconf (= 1.5.82),
debhelper (= 13.11.9),
debianutils (= 5.14),
dh-autoreconf (= 20),
dh-r (= 20231212),
dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.10-1),
dpkg (= 1.22.1+rpi1),
dpkg-dev (= 1.22.1+rpi1),
dwz (= 0.15-1),
file (= 1:5.45-2),
findutils (= 4.9.0-5),
fontconfig (= 2.14.2-6),
fontconfig-config (= 2.14.2-6),
fonts-dejavu-core (= 2.37-8),
fonts-dejavu-mono (= 2.37-8),
g++ (= 4:13.2.0-1+rpi1),
g++-13 (= 13.2.0-7+rpi1),
gcc (= 4:13.2.0-1+rpi1),
gcc-12 (= 12.3.0-13+rpi1),
gcc-12-base (= 12.3.0-13+rpi1),
gcc-13 (= 13.2.0-7+rpi1),
gcc-13-base (= 13.2.0-7+rpi1),
gettext (= 0.21-14),
gettext-base (= 0.21-14),
gfortran (= 4:13.2.0-1+rpi1),
gfortran-13 (= 13.2.0-7+rpi1),
grep (= 3.11-3),
groff-base (= 1.23.0-3),
gzip (= 1.12-1),
hostname (= 3.23+nmu1),
icu-devtools (= 72.1-4),
init-system-helpers (= 1.66),
intltool-debian (= 0.35.0+20060710.6),
libacl1 (= 2.3.1-3),
libalgorithm-c3-perl (= 0.11-2),
libarchive-zip-perl (= 1.68-1),
libasan8 (= 13.2.0-7+rpi1),
libatomic1 (= 13.2.0-7+rpi1),
libattr1 (= 1:2.5.1-4),
libaudit-common (= 1:3.1.2-1),
libaudit1 (= 1:3.1.2-1),
libb-hooks-endofscope-perl (= 0.26-1),
libb-hooks-op-check-perl (= 0.22-2+b1),
libbinutils (= 2.41-6+rpi1),
libblas-dev (= 3.11.0-2),
libblas3 (= 3.11.0-2),
libblkid1 (= 2.39.3-2),
libbrotli1 (= 1.1.0-2),
libbsd0 (= 0.11.7-4),
libbz2-1.0 (= 1.0.8-5+b2),
libbz2-dev (= 1.0.8-5+b2),
libc-bin (= 2.37-12+rpi2),
libc-dev-bin (= 2.37-12+rpi2),
libc6 (= 2.37-12+rpi2),
libc6-dev (= 2.37-12+rpi2),
libcairo2 (= 1.18.0-1),
libcap-ng0 (= 0.8.3-3),
libcap2 (= 1:2.66-4),
libcc1-0 (= 13.2.0-7+rpi1),
libclass-c3-perl (= 0.35-2),
libclass-load-perl (= 0.25-2),
libclass-load-xs-perl (= 0.10-2+b1),
libclone-perl (= 0.46-1),
libcom-err2 (= 1.47.0-2),
libcrypt-dev (= 1:4.4.36-2),
libcrypt1 (= 1:4.4.36-2),
libctf-nobfd0 (= 2.41-6+rpi1),
libctf0 (= 2.41-6+rpi1),
libcurl3-gnutls (= 8.4.0-2+rpi1),
libcurl4 (= 8.4.0-2+rpi1),
libdata-optlist-perl (= 0.114-1),
libdatrie1 (= 0.2.13-2+b2),
libdb5.3 (= 5.3.28+dfsg2-4),
libdebconfclient0 (= 0.271),
libdebhelper-perl (= 13.11.9),
libdeflate0 (= 1.18-1),
libdevel-callchecker-perl (= 0.008-2),
libdevel-globaldestruction-perl (= 0.14-4),
libdevel-overloadinfo-perl (= 0.007-1),
libdevel-stacktrace-perl (= 2.0400-2),
libdist-checkconflicts-perl (= 0.11-2),
libdpkg-perl (= 1.22.1+rpi1),
libdynaloader-functions-perl (= 0.003-3),
libelf1 (= 0.188-2.1+rpi1),
libencode-locale-perl (= 1.05-3),
libeval-closure-perl (= 0.14-3),
libexpat1 (= 2.5.0-2),
libffi8 (= 3.4.4-2),
libfile-find-rule-perl (= 0.34-3),
libfile-stripnondeterminism-perl (= 1.13.1-1),
libfile-which-perl (= 1.27-2),
libfontconfig1 (= 2.14.2-6),
libfreetype6 (= 2.13.2+dfsg-1),
libfribidi0 (= 1.0.13-3),
libgcc-12-dev (= 12.3.0-13+rpi1),
libgcc-13-dev (= 13.2.0-7+rpi1),
libgcc-s1 (= 13.2.0-7+rpi1),
libgcrypt20 (= 1.10.3-2),
libgdbm-compat4 (= 1.23-5),
libgdbm6 (= 1.23-5),
libgfortran-13-dev (= 13.2.0-7+rpi1),
libgfortran5 (= 13.2.0-7+rpi1),
libglib2.0-0 (= 2.78.3-1),
libgmp10 (= 2:6.3.0+dfsg-2),
libgnutls30 (= 3.8.2-1),
libgomp1 (= 13.2.0-7+rpi1),
libgpg-error0 (= 1.47-3),
libgraphite2-3 (= 1.3.14-1),
libgssapi-krb5-2 (= 1.20.1-5),
libharfbuzz0b (= 8.0.1-1),
libhogweed6 (= 3.9.1-2),
libhttp-date-perl (= 6.06-1),
libhttp-message-perl (= 6.45-1),
libice6 (= 2:1.0.10-1),
libicu-dev (= 72.1-4),
libicu72 (= 72.1-4),
libidn2-0 (= 2.3.4-1),
libio-html-perl (= 1.004-3),
libisl23 (= 0.26-3),
libjansson4 (= 2.14-2),
libjbig0 (= 2.1-6.1),
libjpeg-dev (= 1:2.1.5-2),
libjpeg62-turbo (= 1:2.1.5-2),
libjpeg62-turbo-dev (= 1:2.1.5-2),
libk5crypto3 (= 1.20.1-5),
libkeyutils1 (= 1.6.3-2),
libkrb5-3 (= 1.20.1-5),
libkrb5support0 (= 1.20.1-5),
liblapack-dev (= 3.11.0-2),
liblapack3 (= 3.11.0-2),
libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1),
liblerc4 (= 4.0.0+ds-4),
liblwp-mediatypes-perl (= 6.04-2),
liblz4-1 (= 1.9.4-1+rpi1+b1),
liblzma-dev (= 5.4.5-0.1),
liblzma5 (= 5.4.5-0.1),
libmagic-mgc (= 1:5.45-2),
libmagic1 (= 1:5.45-2),
libmd0 (= 1.1.0-1),
libmodule-implementation-perl (= 0.09-2),
libmodule-runtime-conflicts-perl (= 0.003-2),
libmodule-runtime-perl (= 0.016-2),
libmoose-perl (= 2.2206-1),
libmount1 (= 2.39.3-2),
libmpc3 (= 1.3.1-1),
libmpfr6 (= 4.2.1-1),
libmro-compat-perl (= 0.15-2),
libnamespace-clean-perl (= 0.27-2),
libncurses-dev (= 6.4+20231209-1),
libncurses6 (= 6.4+20231209-1),
libncursesw6 (= 6.4+20231209-1),
libnettle8 (= 3.9.1-2),
libnghttp2-14 (= 1.58.0-1),
libnlopt0 (= 2.7.1-5+b1),
libnsl-dev (= 1.3.0-3),
libnsl2 (= 1.3.0-3),
libnumber-compare-perl (= 0.03-3),
libp11-kit0 (= 0.25.3-2),
libpackage-deprecationmanager-perl (= 0.18-1),
libpackage-stash-perl (= 0.40-1),
libpackage-stash-xs-perl (= 0.30-1+b1),
libpam-modules (= 1.5.2-9.1),
libpam-modules-bin (= 1.5.2-9.1),
libpam-runtime (= 1.5.2-9.1),
libpam0g (= 1.5.2-9.1),
libpango-1.0-0 (= 1.51.0+ds-3),
libpangocairo-1.0-0 (= 1.51.0+ds-3),
libpangoft2-1.0-0 (= 1.51.0+ds-3),
libpaper-utils (= 1.1.29),
libpaper1 (= 1.1.29),
libparams-classify-perl (= 0.015-2+b1),
libparams-util-perl (= 1.102-2+b1),
libpcre2-16-0 (= 10.42-4),
libpcre2-32-0 (= 10.42-4),
libpcre2-8-0 (= 10.42-4),
libpcre2-dev (= 10.42-4),
libpcre2-posix3 (= 10.42-4),
libperl5.36 (= 5.36.0-10),
libpipeline1 (= 1.5.7-1),
libpixman-1-0 (= 0.42.2-1),
libpkgconf3 (= 1.8.1-1),
libpng-dev (= 1.6.40-2),
libpng16-16 (= 1.6.40-2),
libpsl5 (= 0.21.2-1+b1),
libreadline-dev (= 8.2-3),
libreadline8 (= 8.2-3),
librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
libsasl2-2 (= 2.1.28+dfsg1-4),
libsasl2-modules-db (= 2.1.28+dfsg1-4),
libseccomp2 (= 2.5.4-2+rpi1),
libselinux1 (= 3.5-1),
libsframe1 (= 2.41-6+rpi1),
libsharpyuv0 (= 1.3.2-0.3),
libsm6 (= 2:1.2.3-1),
libsmartcols1 (= 2.39.3-2),
libssh2-1 (= 1.11.0-3),
libssl3 (= 3.1.4-2),
libstdc++-13-dev (= 13.2.0-7+rpi1),
libstdc++6 (= 13.2.0-7+rpi1),
libsub-exporter-perl (= 0.990-1),
libsub-exporter-progressive-perl (= 0.001013-3),
libsub-identify-perl (= 0.14-3),
libsub-install-perl (= 0.929-1),
libsub-name-perl (= 0.27-1),
libsub-override-perl (= 0.10-1),
libswitch-perl (= 2.17-3),
libsystemd0 (= 254.5-1+rpi1),
libtasn1-6 (= 4.19.0-3),
libtcl8.6 (= 8.6.13+dfsg-2),
libtext-glob-perl (= 0.11-3),
libthai-data (= 0.1.29-1),
libthai0 (= 0.1.29-1),
libtiff6 (= 4.5.1+git230720-3),
libtimedate-perl (= 2.3300-2),
libtinfo6 (= 6.4+20231209-1),
libtirpc-common (= 1.3.4+ds-1),
libtirpc-dev (= 1.3.4+ds-1),
libtirpc3 (= 1.3.4+ds-1),
libtk8.6 (= 8.6.13-2),
libtool (= 2.4.7-7),
libtry-tiny-perl (= 0.31-2),
libubsan1 (= 13.2.0-7+rpi1),
libuchardet0 (= 0.0.8-1),
libudev1 (= 254.5-1+rpi1),
libunistring5 (= 1.1-2),
liburi-perl (= 5.21-1),
libuuid1 (= 2.39.3-2),
libuv1 (= 1.46.0-2+rpi1),
libvariable-magic-perl (= 0.63-1+b1),
libwebp7 (= 1.3.2-0.3),
libwww-curl-perl (= 4.17-10),
libwww-curl-simple-perl (= 0.100191-3),
libx11-6 (= 2:1.8.7-1),
libx11-data (= 2:1.8.7-1),
libxau6 (= 1:1.0.9-1),
libxcb-render0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxft2 (= 2.3.6-1),
libxml2 (= 2.9.14+dfsg-1.3),
libxmuu1 (= 2:1.1.3-3),
libxrender1 (= 1:0.9.10-1.1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.2.1-1.1),
libzstd1 (= 1.5.5+dfsg2-2),
linux-libc-dev (= 6.5.6-1+rpi1),
littler (= 0.3.19-1),
login (= 1:4.13+dfsg1-3),
lsb-base (= 11.6+rpi1),
m4 (= 1.4.19-4),
make (= 4.3-4.1),
man-db (= 2.12.0-1),
mawk (= 1.3.4.20231126-1),
ncurses-base (= 6.4+20231209-1),
ncurses-bin (= 6.4+20231209-1),
openssl (= 3.1.4-2),
patch (= 2.7.6-7),
perl (= 5.36.0-10),
perl-base (= 5.36.0-10),
perl-modules-5.36 (= 5.36.0-10),
pkg-config (= 1.8.1-1),
pkgconf (= 1.8.1-1),
pkgconf-bin (= 1.8.1-1),
po-debconf (= 1.0.21+nmu1),
r-base-core (= 4.3.2-1),
r-base-dev (= 4.3.2-1),
r-cran-boot (= 1.3-28.1-1),
r-cran-brio (= 1.1.4-1),
r-cran-callr (= 3.7.3-2),
r-cran-cli (= 3.6.2-1),
r-cran-crayon (= 1.5.2-1),
r-cran-desc (= 1.4.3-1),
r-cran-diffobj (= 0.3.5-1),
r-cran-digest (= 0.6.33-1),
r-cran-ellipsis (= 0.3.2-2),
r-cran-evaluate (= 0.23-1),
r-cran-fansi (= 1.0.5-1),
r-cran-fs (= 1.6.3+dfsg-1),
r-cran-glue (= 1.6.2-1),
r-cran-jsonlite (= 1.8.8+dfsg-1),
r-cran-lattice (= 0.22-5-1),
r-cran-lifecycle (= 1.0.4+dfsg-1),
r-cran-littler (= 0.3.19-1),
r-cran-lme4 (= 1.1-35.1-4),
r-cran-magrittr (= 2.0.3-1),
r-cran-mass (= 7.3-60-2),
r-cran-matrix (= 1.6-4-1),
r-cran-mgcv (= 1.9-0-1),
r-cran-minqa (= 1.2.6-1),
r-cran-nlme (= 3.1.164-1),
r-cran-nloptr (= 2.0.3-1),
r-cran-numderiv (= 2016.8-1.1-3),
r-cran-pillar (= 1.9.0+dfsg-1),
r-cran-pkgconfig (= 2.0.3-2),
r-cran-pkgkitten (= 0.2.3-1),
r-cran-pkgload (= 1.3.2.1-1),
r-cran-praise (= 1.0.0-4),
r-cran-processx (= 3.8.3-1),
r-cran-ps (= 1.7.5-2),
r-cran-r6 (= 2.5.1-1),
r-cran-rcpp (= 1.0.11-1),
r-cran-rcppeigen (= 0.3.3.9.4-1),
r-cran-rematch2 (= 2.1.2-2),
r-cran-rlang (= 1.1.2-1),
r-cran-rprojroot (= 2.0.4-1),
r-cran-statmod (= 1.5.0-1),
r-cran-testthat (= 3.2.0-1),
r-cran-tibble (= 3.2.1+dfsg-2),
r-cran-tmb (= 1.9.10-1),
r-cran-utf8 (= 1.2.4-1),
r-cran-vctrs (= 0.6.5-1),
r-cran-waldo (= 0.5.2-1),
r-cran-withr (= 2.5.0-1),
readline-common (= 8.2-3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.20),
sysvinit-utils (= 3.08-5),
tar (= 1.34+dfsg-1.3),
tzdata (= 2023c-11),
ucf (= 3.0043+nmu1),
unzip (= 6.0-28),
usr-is-merged (= 38),
usrmerge (= 38),
util-linux (= 2.39.3-2),
x11-common (= 1:7.7+23),
xauth (= 1:1.1.2-1),
xdg-utils (= 1.1.3-4.1),
xz-utils (= 5.4.5-0.1),
zip (= 3.0-13),
zlib1g (= 1:1.3.dfsg-3),
zlib1g-dev (= 1:1.3.dfsg-3)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
LC_COLLATE="C.UTF-8"
SOURCE_DATE_EPOCH="1703350496"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-glmmtmb-dbgsym_1.1.8+dfsg-3_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 3190020 bytes: control archive=540 bytes.
403 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-glmmtmb-dbgsym
Source: r-cran-glmmtmb
Version: 1.1.8+dfsg-3
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 4535
Depends: r-cran-glmmtmb (= 1.1.8+dfsg-3)
Section: debug
Priority: optional
Description: debug symbols for r-cran-glmmtmb
Build-Ids: 204753d9f17324c110d8c8270151a9e41adae769
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lrwxrwxrwx root/root 0 2023-12-23 16:54 ./usr/share/doc/r-cran-glmmtmb-dbgsym -> r-cran-glmmtmb
r-cran-glmmtmb_1.1.8+dfsg-3_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 4764088 bytes: control archive=4252 bytes.
1345 bytes, 17 lines control
10478 bytes, 120 lines md5sums
Package: r-cran-glmmtmb
Version: 1.1.8+dfsg-3
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 8187
Depends: r-api-4.0, r-cran-lme4 (>= 1.1-18.9000), r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-mgcv, r-cran-tmb (>= 1.9.10-1), r-cran-rcppeigen, libc6 (>= 2.34), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libstdc++6 (>= 13.1)
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat, r-cran-mass, r-cran-lattice, r-cran-ggplot2 (>= 2.2.1), r-cran-mlmrev, r-cran-bbmle (>= 1.0.19), r-cran-pscl, r-cran-coda, r-cran-reshape2, r-cran-car (>= 3.0.6), r-cran-emmeans (>= 1.4), r-cran-estimability, r-cran-multcomp, r-cran-effects (>= 4.0-1), r-cran-broom, r-cran-broom.mixed, r-cran-plyr, r-cran-png, r-cran-boot, r-cran-xtable
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=glmmTMB
Description: Generalized Linear Mixed Models using Template Model Builder
Fit linear and generalized linear mixed models with various
extensions, including zero-inflation. The models are fitted using maximum
likelihood estimation via 'TMB' (Template Model Builder). Random effects are
assumed to be Gaussian on the scale of the linear predictor and are integrated
out using the Laplace approximation. Gradients are calculated using automatic
differentiation.
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+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 26428
Build-Time: 156
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 85
Job: r-cran-glmmtmb_1.1.8+dfsg-3
Machine Architecture: arm64
Package: r-cran-glmmtmb
Package-Time: 250
Source-Version: 1.1.8+dfsg-3
Space: 26428
Status: successful
Version: 1.1.8+dfsg-3
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Finished at 2023-12-26T06:00:17Z
Build needed 00:04:10, 26428k disk space