Raspbian Package Auto-Building

r-cran-glmmtmb → 1.1.8+dfsg-2 → armhf → 2023-11-29 07:01:56

sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023

+==============================================================================+
| r-cran-glmmtmb 1.1.8+dfsg-2 (armhf)          Wed, 29 Nov 2023 06:56:49 +0000 |
+==============================================================================+

Package: r-cran-glmmtmb
Version: 1.1.8+dfsg-2
Source Version: 1.1.8+dfsg-2
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-9c92b3b8-4882-442a-b6ad-b761a8705479' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-juC7tg/resolver-3b1tSR' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.9 MB]
Fetched 29.2 MB in 5s (5626 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-cran-glmmtmb' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3764 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-cran-glmmtmb 1.1.8+dfsg-2 (dsc) [2573 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-cran-glmmtmb 1.1.8+dfsg-2 (tar) [3747 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-cran-glmmtmb 1.1.8+dfsg-2 (diff) [15.1 kB]
Fetched 3764 kB in 0s (7621 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-juC7tg/r-cran-glmmtmb-1.1.8+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-juC7tg' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-tmb (>= 1.9.0), r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-mgcv, r-cran-rcppeigen, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-tmb (>= 1.9.0), r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-mgcv, r-cran-rcppeigen, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [747 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [779 B]
Fetched 2135 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils bsdutils
  ca-certificates dctrl-tools debhelper dh-autoreconf dh-r
  dh-strip-nondeterminism dpkg-dev dwz file fontconfig fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono gettext gettext-base gfortran
  gfortran-13 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
  libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libblas-dev libblas3 libblkid1 libbrotli1 libbsd0 libbz2-dev libcairo2
  libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
  libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
  libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdpkg-perl libdynaloader-functions-perl
  libelf1 libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
  libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
  liblzma-dev liblzma5 libmagic-mgc libmagic1 libmodule-implementation-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
  libmount1 libmro-compat-perl libnamespace-clean-perl libncurses-dev
  libncurses6 libncursesw6 libnghttp2-14 libnlopt0
  libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
  libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
  libreadline-dev librtmp1 libsharpyuv0 libsm6 libsmartcols1 libssh2-1
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
  libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtinfo6 libtk8.6
  libtool libtry-tiny-perl libuchardet0 liburi-perl libuuid1 libuv1
  libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
  libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
  libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4
  man-db mount ncurses-base ncurses-bin openssl pkg-config pkgconf pkgconf-bin
  po-debconf r-base-core r-base-dev r-cran-boot r-cran-brio r-cran-callr
  r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest
  r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue
  r-cran-jsonlite r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-lme4
  r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-minqa
  r-cran-nlme r-cran-nloptr r-cran-numderiv r-cran-pillar r-cran-pkgconfig
  r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps
  r-cran-r6 r-cran-rcpp r-cran-rcppeigen r-cran-rematch2 r-cran-rlang
  r-cran-rprojroot r-cran-statmod r-cran-testthat r-cran-tibble r-cran-tmb
  r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr sensible-utils ucf unzip
  util-linux x11-common xauth xdg-utils xz-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc debtags dh-make
  postgresql-client-common debian-keyring gettext-doc libasprintf-dev
  libgettextpo-dev gfortran-doc gfortran-13-doc libcoarrays-dev groff
  liblapack-doc git bzr low-memory-monitor icu-doc liblzma-doc cryptsetup-bin
  ncurses-doc libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc
  gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl
  libcurl4-gnutls-dev m4-doc apparmor less www-browser nfs-common
  libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
  texlive-base texlive-latex-base texlive-plain-generic
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
  texlive-latex-recommended texlive-latex-extra texinfo r-cran-covr
  r-cran-spelling r-cran-htmltools r-cran-htmlwidgets r-cran-knitr
  r-cran-rmarkdown r-cran-rstudioapi r-cran-whoami r-cran-dbi r-cran-dplyr
  r-cran-forcats r-cran-ggplot2 r-cran-r.utils r-cran-rsqlite r-cran-stringr
  r-cran-getopt r-cran-bit64 r-cran-formattable r-cran-nanotime
  r-cran-palmerpenguins r-cran-scales r-cran-stringi r-cran-survival
  r-cran-units r-cran-vdiffr r-cran-curl r-cran-pingr r-cran-webfakes
  r-cran-inline r-cran-bench r-cran-blob r-cran-here r-cran-hms
  r-cran-pkgbuild r-cran-purrr r-cran-tidyr dosfstools kbd util-linux-extra
  util-linux-locales
Recommended packages:
  devscripts cme git-buildpackage libalgorithm-merge-perl curl | wget | lynx
  bzip2-doc libclass-c3-xs-perl libfile-fcntllock-perl libdevel-lexalias-perl
  libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs
  libio-compress-brotli-perl libdevel-partialdump-perl libgpm2 libpng-tools
  publicsuffix libltdl-dev uuid-runtime libmail-sendmail-perl r-recommended
  r-doc-html r-cran-cliapp r-cran-mockery r-cran-covr r-cran-gh r-cran-ggplot2
  r-cran-unitizer r-cran-knitr r-cran-rmarkdown r-cran-spelling r-cran-httr
  r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse r-cran-lubridate
  r-cran-bitops r-cran-mathjaxr r-cran-mockr r-cran-pkgbuild r-cran-remotes
  r-cran-rstudioapi r-cran-codetools r-cran-curl r-cran-webfakes
  r-cran-usethis r-cran-shiny r-cran-xml2 r-cran-data.table r-cran-rsqlite
  r-cran-dplyr r-cran-formattable r-cran-bit64 r-cran-generics r-cran-pkgdown
  r-cran-zeallot r-cran-dbi libfile-mimeinfo-perl libnet-dbus-perl
  libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
  gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
  libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
  libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
  libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
  libdebhelper-perl libdeflate0 libdevel-callchecker-perl
  libdevel-globaldestruction-perl libdevel-overloadinfo-perl
  libdevel-stacktrace-perl libdist-checkconflicts-perl
  libdynaloader-functions-perl libelf1 libencode-locale-perl
  libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
  libgfortran-13-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
  libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
  libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
  libmagic-mgc libmagic1 libmodule-implementation-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
  libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
  libnghttp2-14 libnlopt0 libpackage-deprecationmanager-perl
  libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
  libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0
  libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3
  libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1 libsharpyuv0 libsm6
  libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
  libsub-identify-perl libsub-install-perl libsub-name-perl
  libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6
  libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
  libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl
  libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
  libxss1 libxt6 littler m4 man-db openssl pkg-config pkgconf pkgconf-bin
  po-debconf r-base-core r-base-dev r-cran-boot r-cran-brio r-cran-callr
  r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest
  r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue
  r-cran-jsonlite r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-lme4
  r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-minqa
  r-cran-nlme r-cran-nloptr r-cran-numderiv r-cran-pillar r-cran-pkgconfig
  r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps
  r-cran-r6 r-cran-rcpp r-cran-rcppeigen r-cran-rematch2 r-cran-rlang
  r-cran-rprojroot r-cran-statmod r-cran-testthat r-cran-tibble r-cran-tmb
  r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr
  sbuild-build-depends-main-dummy sensible-utils ucf unzip x11-common xauth
  xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  bsdutils dpkg-dev libblkid1 libdpkg-perl liblzma5 libmount1 libncursesw6
  libsmartcols1 libtinfo6 libuuid1 mount ncurses-base ncurses-bin util-linux
  xz-utils
15 upgraded, 218 newly installed, 0 to remove and 22 not upgraded.
1 not fully installed or removed.
Need to get 128 MB/130 MB of archives.
After this operation, 334 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [936 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.2-6 [134 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.2-6 [86.5 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf ncurses-bin armhf 6.4+20231121-1 [420 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.2-6 [1110 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf ncurses-base all 6.4+20231121-1 [267 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.2-6 [145 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf liblzma5 armhf 5.4.5-0.1 [226 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.2-6 [167 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf libtinfo6 armhf 6.4+20231121-1 [325 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libncursesw6 armhf 6.4+20231121-1 [106 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.2-6 [102 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.2-6 [28.1 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-6 [81.2 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.11-1 [1367 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf xz-utils armhf 5.4.5-0.1 [499 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.8 [82.1 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:39 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.8 [956 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:53 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-2 [195 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.4.0-2+rpi1 [362 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.1-4 [1257 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-5+rpi1 [247 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-3 [188 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-3 [40.3 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-3 [30.5 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.2-1 [26.4 MB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-5+rpi1 [293 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-5+rpi1 [7840 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:13.2.0-1+rpi1 [1424 B]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20231121-1 [80.8 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20231121-1 [290 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-1.3 [123 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-2 [336 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.1 [278 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.2-1 [4504 B]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.45-1 [82.0 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.4.0-2+rpi1 [358 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20231109 [41.6 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf libnlopt0 armhf 2.7.1-5+b1 [139 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf libuv1 armhf 1.46.0-2+rpi1 [128 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.18-2 [86.0 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf littler all 0.3.18-2 [14.8 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf r-cran-boot all 1.3-28.1-1 [620 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf r-cran-brio armhf 1.1.3-1 [34.8 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf r-cran-ps armhf 1.7.5-1 [305 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf r-cran-processx armhf 3.8.2-1 [333 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf r-cran-callr all 3.7.3-2 [426 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf r-cran-cli armhf 3.6.1-1 [1307 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-cran-rprojroot all 2.0.4-1 [124 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf r-cran-desc all 1.4.2-1 [348 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf r-cran-diffobj armhf 0.3.5-1 [1111 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf r-cran-digest armhf 0.6.33-1 [185 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-cran-rlang armhf 1.1.2-1 [1654 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-cran-evaluate all 0.23-1 [90.6 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-cran-fansi armhf 1.0.5-1 [611 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-cran-fs armhf 1.6.3+dfsg-1 [224 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-cran-jsonlite armhf 1.8.7+dfsg-1 [439 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-3-1 [3687 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf r-cran-mass armhf 7.3-60-2 [1114 kB]
Get:209 http://172.17.4.1/private trixie-staging/main armhf r-cran-nlme armhf 3.1.163-1 [2274 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgkitten all 0.2.3-1 [26.7 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcpp armhf 1.0.11-1 [2043 kB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf r-cran-minqa armhf 1.2.6-1 [100 kB]
Get:213 http://172.17.4.1/private trixie-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:214 http://172.17.4.1/private trixie-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:215 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgload all 1.3.2.1-1 [206 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf r-cran-praise all 1.0.0-4 [20.1 kB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf r-cran-utf8 armhf 1.2.4-1 [129 kB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf r-cran-vctrs armhf 0.6.4-1 [1336 kB]
Get:219 http://172.17.4.1/private trixie-staging/main armhf r-cran-pillar all 1.9.0+dfsg-1 [463 kB]
Get:220 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:221 http://172.17.4.1/private trixie-staging/main armhf r-cran-tibble armhf 3.2.1+dfsg-2 [422 kB]
Get:222 http://172.17.4.1/private trixie-staging/main armhf r-cran-rematch2 all 2.1.2-2 [46.3 kB]
Get:223 http://172.17.4.1/private trixie-staging/main armhf r-cran-waldo all 0.5.2-1 [120 kB]
Get:224 http://172.17.4.1/private trixie-staging/main armhf r-cran-testthat armhf 3.2.0-1 [1618 kB]
Get:225 http://172.17.4.1/private trixie-staging/main armhf r-cran-nloptr armhf 2.0.3-1 [351 kB]
Get:226 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcppeigen armhf 0.3.3.9.4-1 [1150 kB]
Get:227 http://172.17.4.1/private trixie-staging/main armhf r-cran-statmod armhf 1.5.0-1 [295 kB]
Get:228 http://172.17.4.1/private trixie-staging/main armhf r-cran-lme4 armhf 1.1-35.1-4 [4088 kB]
Get:229 http://172.17.4.1/private trixie-staging/main armhf r-cran-mgcv armhf 1.9-0-1 [3196 kB]
Get:230 http://172.17.4.1/private trixie-staging/main armhf r-cran-numderiv all 2016.8-1.1-3 [115 kB]
Get:231 http://172.17.4.1/private trixie-staging/main armhf r-cran-tmb armhf 1.9.6-8 [1000 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libicu72:armhf (72.1-4) ...
Setting up liblerc4:armhf (4.0.0+ds-3) ...
Setting up bsdextrautils (2.39.2-6) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libdatrie1:armhf (0.2.13-2+b2) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libclone-perl:armhf (0.46-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3) ...
Setting up libglib2.0-0:armhf (2.78.1-4) ...
No schema files found: doing nothing.
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.11.8) ...
Setting up libbrotli1:armhf (1.1.0-2) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.58.0-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-13) ...
Setting up m4 (1.4.19-4) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libnlopt0:armhf (2.7.1-5+b1) ...
Setting up file (1:5.45-2) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libpcre2-16-0:armhf (10.42-4) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up zip (3.0-13) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.42-4) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.1-1) ...
Setting up libuv1:armhf (1.46.0-2+rpi1) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up libswitch-perl (2.17-3) ...
Setting up libx11-data (2:1.8.7-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.4+20231121-1) ...
Setting up xz-utils (5.4.5-0.1) ...
Setting up libfribidi0:armhf (1.0.13-3) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16:armhf (1.6.40-2) ...
Setting up libvariable-magic-perl (0.63-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-13) ...
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Setting up icu-devtools (72.1-4) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up libdpkg-perl (1.22.1+rpi1) ...
Setting up libgfortran5:armhf (13.2.0-5+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libwebp7:armhf (1.3.2-0.3) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up liblzma-dev:armhf (5.4.5-0.1) ...
Setting up libsub-name-perl:armhf (0.27-1) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-3) ...
Setting up libpcre2-posix3:armhf (10.42-4) ...
Setting up mount (2.39.2-6) ...
Setting up sensible-utils (0.0.20) ...
Setting up libtiff6:armhf (4.5.1+git230720-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libthai-data (0.1.29-1) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libssh2-1:armhf (1.11.0-2) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up libgfortran-13-dev:armhf (13.2.0-5+rpi1) ...
Setting up openssl (3.0.11-1) ...
Setting up libbsd0:armhf (0.11.7-4) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libicu-dev:armhf (72.1-4) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up liburi-perl (5.21-1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20231121-1) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-13) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-2) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (8.4.0-2+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up dpkg-dev (1.22.1+rpi1) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up gfortran-13 (13.2.0-5+rpi1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up ucf (3.0043+nmu1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libcurl4:armhf (8.4.0-2+rpi1) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.45-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libpaper1:armhf (1.1.29) ...

Creating config file /etc/papersize with new version
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up libpaper-utils (1.1.29) ...
Setting up man-db (2.12.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:13.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up debhelper (13.11.8) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up r-base-core (4.3.2-1) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-lattice (0.22-5-1) ...
Setting up r-cran-ps (1.7.5-1) ...
Setting up r-cran-nlme (3.1.163-1) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up r-cran-statmod (1.5.0-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.3-1) ...
Setting up r-cran-numderiv (2016.8-1.1-3) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-littler (0.3.18-2) ...
Setting up r-cran-fs (1.6.3+dfsg-1) ...
Setting up r-cran-rcpp (1.0.11-1) ...
Setting up r-cran-brio (1.1.3-1) ...
Setting up r-cran-boot (1.3-28.1-1) ...
Setting up r-cran-diffobj (0.3.5-1) ...
Setting up r-cran-rlang (1.1.2-1) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up littler (0.3.18-2) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-processx (3.8.2-1) ...
Setting up r-cran-praise (1.0.0-4) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up r-cran-digest (0.6.33-1) ...
Setting up r-cran-evaluate (0.23-1) ...
Setting up r-cran-fansi (1.0.5-1) ...
Setting up r-cran-mass (7.3-60-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-cli (3.6.1-1) ...
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-rprojroot (2.0.4-1) ...
Setting up r-cran-jsonlite (1.8.7+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.4-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-cran-matrix (1.6-3-1) ...
Setting up r-cran-mgcv (1.9-0-1) ...
Setting up r-cran-vctrs (0.6.4-1) ...
Setting up r-cran-rcppeigen (0.3.3.9.4-1) ...
Setting up r-cran-pillar (1.9.0+dfsg-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-minqa (1.2.6-1) ...
Setting up r-cran-callr (3.7.3-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-cran-desc (1.4.2-1) ...
Setting up r-cran-tibble (3.2.1+dfsg-2) ...
Setting up r-cran-tmb (1.9.6-8) ...
Setting up dh-r (20231109) ...
Setting up r-cran-pkgload (1.3.2.1-1) ...
Setting up r-cran-rematch2 (2.1.2-2) ...
Setting up r-cran-waldo (0.5.2-1) ...
Setting up r-cran-testthat (3.2.0-1) ...
Setting up r-cran-nloptr (2.0.3-1) ...
Setting up r-cran-lme4 (1.1-35.1-4) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep  1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc-12_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-5+rpi1 libstdc++6_13.2.0-5+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.2 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.2-6 bsdutils_1:2.39.2-6 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-10+rpi1 cpp-13_13.2.0-5+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.8 debianutils_5.14 dh-autoreconf_20 dh-r_20231109 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-5+rpi1 gcc_4:13.2.0-1+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 gcc-13_13.2.0-5+rpi1 gcc-13-base_13.2.0-5+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-13 gettext-base_0.21-13 gfortran_4:13.2.0-1+rpi1 gfortran-13_13.2.0-5+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-4 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-5+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-5+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.2-6 libbrotli1_1.1.0-2 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcairo2_1.18.0-1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcc1-0_13.2.0-5+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.4.0-2+rpi1 libcurl4_8.4.0-2+rpi1 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.271 libdebhelper-perl_13.11.8 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.22.1+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.2-6 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.3.0-10+rpi1 libgcc-13-dev_13.2.0-5+rpi1 libgcc-s1_13.2.0-5+rpi1 libgcrypt20_1.10.2-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-13-dev_13.2.0-5+rpi1 libgfortran5_13.2.0-5+rpi1 libglib2.0-0_2.78.1-4 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_13.2.0-5+rpi1 libgpg-error0_1.47-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-4 libharfbuzz0b_8.0.1-1 libhogweed6_3.9.1-2 libhttp-date-perl_6.06-1 libhttp-message-perl_6.45-1 libice6_2:1.0.10-1 libicu-dev_72.1-4 libicu72_72.1-4 libidn2-0_2.3.4-1 libio-html-perl_1.004-3 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg-dev_1:2.1.5-2 libjpeg62-turbo_1:2.1.5-2 libjpeg62-turbo-dev_1:2.1.5-2 libk5crypto3_1.20.1-4 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-4 libkrb5support0_1.20.1-4 libksba8_1.6.4-2 liblapack-dev_3.11.0-2 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libsub-install-perl_0.929-1 libsub-name-perl_0.27-1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtcl8.6_8.6.13+dfsg-2 libtext-charwidth-perl_0.04-11 libtext-iconv-perl_1.7-8 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff6_4.5.1+git230720-1 libtimedate-perl_2.3300-2 libtinfo6_6.4+20231121-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libubsan1_13.2.0-5+rpi1 libuchardet0_0.0.7-1 libudev1_254.5-1+rpi1 libunistring5_1.1-2 liburi-perl_5.21-1 libuuid1_2.39.2-6 libuv1_1.46.0-2+rpi1 libvariable-magic-perl_0.63-1+b1 libwebp7_1.3.2-0.3 libwww-curl-perl_4.17-10 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 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r-cran-mass_7.3-60-2 r-cran-matrix_1.6-3-1 r-cran-mgcv_1.9-0-1 r-cran-minqa_1.2.6-1 r-cran-nlme_3.1.163-1 r-cran-nloptr_2.0.3-1 r-cran-numderiv_2016.8-1.1-3 r-cran-pillar_1.9.0+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.3-1 r-cran-pkgload_1.3.2.1-1 r-cran-praise_1.0.0-4 r-cran-processx_3.8.2-1 r-cran-ps_1.7.5-1 r-cran-r6_2.5.1-1 r-cran-rcpp_1.0.11-1 r-cran-rcppeigen_0.3.3.9.4-1 r-cran-rematch2_2.1.2-2 r-cran-rlang_1.1.2-1 r-cran-rprojroot_2.0.4-1 r-cran-statmod_1.5.0-1 r-cran-testthat_3.2.0-1 r-cran-tibble_3.2.1+dfsg-2 r-cran-tmb_1.9.6-8 r-cran-utf8_1.2.4-1 r-cran-vctrs_0.6.4-1 r-cran-waldo_0.5.2-1 r-cran-withr_2.5.0-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 unzip_6.0-28 usr-is-merged_37 util-linux_2.39.2-6 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.5-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb
Architecture: any
Version: 1.1.8+dfsg-2
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://cran.r-project.org/package=glmmTMB
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
Testsuite: autopkgtest, autopkgtest-pkg-r
Testsuite-Triggers: r-cran-bbmle, r-cran-boot, r-cran-broom, r-cran-broom.mixed, r-cran-car, r-cran-coda, r-cran-effects, r-cran-emmeans, r-cran-estimability, r-cran-ggplot2, r-cran-knitr, r-cran-lattice, r-cran-mass, r-cran-mlmrev, r-cran-multcomp, r-cran-plyr, r-cran-png, r-cran-pscl, r-cran-reshape2, r-cran-rmarkdown, r-cran-testthat, r-cran-xtable
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-tmb (>= 1.9.0), r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-mgcv, r-cran-rcppeigen
Package-List:
 r-cran-glmmtmb deb gnu-r optional arch=any
Checksums-Sha1:
 45ed42c43f8a5606d95a842522b2fdb5dd6411e2 3746844 r-cran-glmmtmb_1.1.8+dfsg.orig.tar.xz
 bfe40e9c34876f40af5aa2925aa3047fce5140b8 15060 r-cran-glmmtmb_1.1.8+dfsg-2.debian.tar.xz
Checksums-Sha256:
 a7dab3cdca4db6fcd04be162fcae24166a2bb70915afb57a53c621efba69d1e8 3746844 r-cran-glmmtmb_1.1.8+dfsg.orig.tar.xz
 37c8b6af11a0da306801c51ed3af680af091b2e33c2e586f349d37c12e78bed9 15060 r-cran-glmmtmb_1.1.8+dfsg-2.debian.tar.xz
Files:
 0b816d141cbc80ee912c07c64e888ac8 3746844 r-cran-glmmtmb_1.1.8+dfsg.orig.tar.xz
 bba5727feba085338aec23821b86ed94 15060 r-cran-glmmtmb_1.1.8+dfsg-2.debian.tar.xz

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gpgv: Signature made Mon Nov 27 08:09:04 2023 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-cran-glmmtmb_1.1.8+dfsg-2.dsc: no acceptable signature found
dpkg-source: info: extracting r-cran-glmmtmb in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-glmmtmb_1.1.8+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-cran-glmmtmb_1.1.8+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-autopkgtest.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-9c92b3b8-4882-442a-b6ad-b761a8705479
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-cran-glmmtmb
dpkg-buildpackage: info: source version 1.1.8+dfsg-2
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem R 
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary-arch
dh binary-arch --buildsystem R 
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install --destdir=debian/r-cran-glmmtmb/ -a -O--buildsystem=R
I: R packages needed for DEP8: glmmtmb
I: R Package: glmmTMB Version: 1.1.8
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 27 Nov 2023 08:58:39 +0100
	mkdir -p /<<BUILDDIR>>/r-cran-glmmtmb-1.1.8\+dfsg/debian/r-cran-glmmtmb/usr/lib/R/site-library
	R CMD INSTALL -l /<<BUILDDIR>>/r-cran-glmmtmb-1.1.8\+dfsg/debian/r-cran-glmmtmb/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 27 Nov 2023 08:58:39 +0100'"
* installing *source* package ‘glmmTMB’ ...
files ‘inst/doc/covstruct.html’, ‘inst/doc/hacking.html’, ‘inst/doc/mcmc.html’, ‘inst/doc/miscEx.html’, ‘inst/doc/parallel.html’, ‘inst/doc/sim.html’, ‘inst/doc/troubleshooting.html’ are missing
file ‘DESCRIPTION’ has the wrong MD5 checksum
** using staged installation
** libs
using C++ compiler: ‘g++ (Raspbian 13.2.0-5+rpi1) 13.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/usr/lib/R/site-library/TMB/include' -I'/usr/lib/R/site-library/RcppEigen/include'    -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c glmmTMB.cpp -o glmmTMB.o
In file included from /usr/include/c++/13/vector:72,
                 from /usr/include/c++/13/functional:64,
                 from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:281,
                 from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
                 from /usr/lib/R/site-library/TMB/include/TMB.hpp:83,
                 from glmmTMB.cpp:1:
/usr/include/c++/13/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’:
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘std::vector<TMBad::global::ad_aug>::iterator’ changed in GCC 7.1
  751 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In function ‘void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc:751:7: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<double, std::allocator<double> >::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/13/vector:66:
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘TMBad::global::ad_plain TMBad::global::add_to_stack(TMBad::Scalar) [with OperatorBase = InvOp]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2452:27,
    inlined from ‘void TMBad::global::ad_plain::Independent()’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:2051:42:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
 1289 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘TMBad::global TMBad::global::extract_sub(std::vector<unsigned int>&, TMBad::global)’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:1287:32:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
 1289 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘TMBad::global::ad_plain TMBad::global::add_to_stack(TMBad::Scalar) [with OperatorBase = ConstOp]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2452:27,
    inlined from ‘TMBad::global::ad_plain::ad_plain(TMBad::Scalar)’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:1960:44:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
 1289 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/lib/R/site-library/TMB/include/atomic_math.hpp:158,
                 from /usr/lib/R/site-library/TMB/include/TMB.hpp:191:
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In function ‘void atomic::pnorm1Op<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
  139 |   template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) {  \
      |                             ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:209:1: note: in expansion of macro ‘TMB_ATOMIC_STATIC_FUNCTION’
  209 | TMB_ATOMIC_STATIC_FUNCTION(
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:5,
                 from /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:4,
                 from /usr/lib/R/site-library/TMB/include/TMB.hpp:114:
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::pnorm1Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::pnorm1Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::pnorm1Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
    inlined from ‘void TMBad::global::AddForwardReverse<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::Rep<atomic::pnorm1Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1683:33,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::pnorm1Op<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::pnorm1Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::pnorm1Op<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {TMBad::global::ad_aug}; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<TMBad::global::ad_aug>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {TMBad::global::ad_aug}; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘std::vector<TMBad::global::ad_aug> TMBad::concat(const std::vector<global::ad_segment>&)’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:4669:20:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘std::vector<double, std::allocator<double> > TMBad::ADFun<ad>::Jacobian(const std::vector<double, std::allocator<double> >&, std::vector<bool>, std::vector<bool>) [with ad = TMBad::global::ad_aug]’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:532:22:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
 1289 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Eigen::Triplet<TMBad::global::ad_aug, int>}; _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<Eigen::Triplet<TMBad::global::ad_aug, int>, std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> > >::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > >::iterator’ changed in GCC 7.1
/usr/include/c++/13/bits/vector.tcc: In function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]’:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = TMBad::global::ad_aug; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:540:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = TMBad::global::ad_aug; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:541:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<TMBad::global::ad_aug, int>}; _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = TMBad::global::ad_aug]’ at /usr/lib/R/site-library/TMB/include/tmbutils/spmat.hpp:21:26:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Triplet<TMBad::global::ad_aug, int>*, std::vector<Eigen::Triplet<TMBad::global::ad_aug, int>, std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> > > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<TMBad::global::ad_aug, int>}; _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘Eigen::SparseMatrix<typename V::value_type> newton::jacobian_sparse_t<Factorization>::as_matrix(const V&) [with V = std::vector<TMBad::global::ad_aug>; Factorization = Eigen::SimplicialLLT<Eigen::SparseMatrix<double> >]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:298:28:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Triplet<TMBad::global::ad_aug, int>*, std::vector<Eigen::Triplet<TMBad::global::ad_aug, int>, std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> > > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const TMBad::global::ad_aug&}; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’:
/usr/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector<TMBad::global::ad_aug>::iterator’ changed in GCC 7.1
  445 |       vector<_Tp, _Alloc>::
      |       ^~~~~~~~~~~~~~~~~~~
In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘std::vector<T> TMBad::subset(const std::vector<T>&, const std::vector<bool>&) [with T = global::ad_aug]’ at /usr/lib/R/site-library/TMB/include/TMBad/graph_transform.hpp:44:28:
/usr/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1289 |           _M_realloc_insert(end(), __x);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp: In constructor ‘TMBad::ADFun<ad>::ADFun(Functor, const ScalarVector&) [with Functor = TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >; ScalarVector = newton::vector<TMBad::global::ad_aug>; ad = TMBad::global::ad_aug]’:
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:122:3: note: parameter passing for argument of type ‘TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
  122 |   ADFun(Functor F, const ScalarVector &x_) : force_update_flag(false) {
      |   ^~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘newton::vector<TMBad::global::ad_aug> newton::NewtonOperator<Functor, Hessian_Type>::add_to_tape() [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:841:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘newton::vector<TMBad::global::ad_aug> newton::NewtonOperator<Functor, Hessian_Type>::add_to_tape() [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:841:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘newton::vector<TMBad::global::ad_aug> newton::NewtonOperator<Functor, Hessian_Type>::add_to_tape() [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:841:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In file included from /usr/lib/R/site-library/TMB/include/TMB.hpp:201:
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp: In constructor ‘newton::NewtonOperator<Functor, Hessian_Type>::NewtonOperator(Functor&, newton::vector<TMBad::global::ad_aug>, newton::newton_config) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]’:
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:783:23: note: parameter passing for argument of type ‘newton::NewtonOperator<newton::slice<>, newton::jacobian_dense_t<> >::FunctorExtend’ {aka ‘TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >’} changed in GCC 7.1
  783 |     function = TMBad::ADFun<> ( FunctorExtend(F), start);
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘TMBad::Decomp3<ADFun> TMBad::Decomp2<ADFun>::HesFun(std::vector<bool>, bool, bool, bool) [with ADFun = TMBad::ADFun<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1315:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘TMBad::Decomp3<ADFun> TMBad::Decomp2<ADFun>::HesFun(std::vector<bool>, bool, bool, bool) [with ADFun = TMBad::ADFun<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1317:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘TMBad::Decomp3<ADFun> TMBad::Decomp2<ADFun>::HesFun(std::vector<bool>, bool, bool, bool) [with ADFun = TMBad::ADFun<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1328:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘TMBad::Decomp3<ADFun> TMBad::Decomp2<ADFun>::HesFun(std::vector<bool>, bool, bool, bool) [with ADFun = TMBad::ADFun<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1362:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]’,
    inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]’ at /usr/include/c++/13/bits/stl_vector.h:1296:21,
    inlined from ‘Eigen::SparseMatrix<typename V::value_type> newton::jacobian_sparse_t<Factorization>::as_matrix(const V&) [with V = std::vector<double, std::allocator<double> >; Factorization = Eigen::SimplicialLLT<Eigen::SparseMatrix<double> >]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:298:28:
/usr/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >’ changed in GCC 7.1
  123 |           _M_realloc_insert(end(), std::forward<_Args>(__args)...);
      |           ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp: In constructor ‘newton::NewtonOperator<Functor, Hessian_Type>::NewtonOperator(Functor&, newton::vector<TMBad::global::ad_aug>, newton::newton_config) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]’:
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:783:23: note: parameter passing for argument of type ‘newton::NewtonOperator<newton::slice<>, newton::jacobian_sparse_t<> >::FunctorExtend’ {aka ‘TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >’} changed in GCC 7.1
  783 |     function = TMBad::ADFun<> ( FunctorExtend(F), start);
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp: In constructor ‘newton::NewtonOperator<Functor, Hessian_Type>::NewtonOperator(Functor&, newton::vector<TMBad::global::ad_aug>, newton::newton_config) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’:
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:783:23: note: parameter passing for argument of type ‘newton::NewtonOperator<newton::slice<>, newton::jacobian_sparse_plus_lowrank_t<> >::FunctorExtend’ {aka ‘TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >’} changed in GCC 7.1
  783 |     function = TMBad::ADFun<> ( FunctorExtend(F), start);
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::matmulOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   31 |   void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) {              \
      |        ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:435:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  435 | TMB_ATOMIC_VECTOR_FUNCTION(
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::matmulOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   37 |   template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) {  \
      |                             ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:435:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  435 | TMB_ATOMIC_VECTOR_FUNCTION(
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::invpdOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   31 |   void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) {              \
      |        ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:528:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  528 | TMB_ATOMIC_VECTOR_FUNCTION(
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::logdetOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   31 |   void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) {              \
      |        ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:503:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  503 | TMB_ATOMIC_VECTOR_FUNCTION(
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
distrib.h: In member function ‘void glmmtmb::logit_invcloglogOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   31 |   void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) {              \
      |        ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
distrib.h:196:3: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  196 |   TMB_ATOMIC_VECTOR_FUNCTION(
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
distrib.h: In member function ‘void glmmtmb::logit_invcloglogOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   37 |   template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) {  \
      |                             ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
distrib.h:196:3: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  196 |   TMB_ATOMIC_VECTOR_FUNCTION(
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
distrib.h: In member function ‘void glmmtmb::logit_pnormOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   31 |   void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) {              \
      |        ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
distrib.h:227:3: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  227 |   TMB_ATOMIC_VECTOR_FUNCTION(
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
distrib.h: In member function ‘void glmmtmb::logit_pnormOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   37 |   template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) {  \
      |                             ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
distrib.h:227:3: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  227 |   TMB_ATOMIC_VECTOR_FUNCTION(
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In function ‘void atomic::bessel_k_10Op<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
  139 |   template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) {  \
      |                             ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:368:1: note: in expansion of macro ‘TMB_ATOMIC_STATIC_FUNCTION’
  368 | TMB_ATOMIC_STATIC_FUNCTION(
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::bessel_k_10Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::bessel_k_10Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::bessel_k_10Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
    inlined from ‘void TMBad::global::AddForwardReverse<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::Rep<atomic::bessel_k_10Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1683:33,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::bessel_k_10Op<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::bessel_k_10Op<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::bessel_k_10Op<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = TMBad::global::ad_aug; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:540:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:541:15:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In function ‘void atomic::D_lgammaOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
  139 |   template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) {  \
      |                             ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:317:1: note: in expansion of macro ‘TMB_ATOMIC_STATIC_FUNCTION’
  317 | TMB_ATOMIC_STATIC_FUNCTION(
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::D_lgammaOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::D_lgammaOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::D_lgammaOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
    inlined from ‘void TMBad::global::AddForwardReverse<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::Rep<atomic::D_lgammaOp<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1683:33,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::D_lgammaOp<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::D_lgammaOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::D_lgammaOp<> >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = TMBad::global::ad_aug; Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::logdetOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   37 |   template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) {  \
      |                             ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:503:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  503 | TMB_ATOMIC_VECTOR_FUNCTION(
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = TMBad::global::ad_aug; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::invpdOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   37 |   template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) {  \
      |                             ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:528:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  528 | TMB_ATOMIC_VECTOR_FUNCTION(
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::retaping_derivative_table<TMBad::logIntegrate_t<>, TMBad::ADFun<>, TMBad::ParametersChanged, false>]’ at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:218:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::retaping_derivative_table<TMBad::logIntegrate_t<>, TMBad::ADFun<>, TMBad::ParametersChanged, false>]’ at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:219:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::standard_derivative_table<TMBad::ADFun<>, false>]’ at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:218:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]’,
    inlined from ‘void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::standard_derivative_table<TMBad::ADFun<>, false>]’ at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:219:14:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = double; Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = double; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = double; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:540:15,
    inlined from ‘newton::jacobian_sparse_plus_lowrank_t<dummy>::sparse_plus_lowrank<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::operator()(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:546:29,
    inlined from ‘const char* newton::NewtonOperator<Functor, Hessian_Type>::newton_iterate(newton::vector<double>&) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:915:9,
    inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::forward(TMBad::ForwardArgs<double>&) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1011:19:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
In member function ‘std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]’,
    inlined from ‘std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:541:15,
    inlined from ‘newton::jacobian_sparse_plus_lowrank_t<dummy>::sparse_plus_lowrank<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::operator()(const std::vector<T>&) [with T = double; dummy = void]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:546:29,
    inlined from ‘const char* newton::NewtonOperator<Functor, Hessian_Type>::newton_iterate(newton::vector<double>&) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:915:9,
    inlined from ‘void newton::NewtonOperator<Functor, Hessian_Type>::forward(TMBad::ForwardArgs<double>&) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]’ at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1011:19:
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
 1483 |           _M_range_insert(begin() + __offset, __first, __last,
      |           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1484 |                           std::__iterator_category(__first));
      |                           ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/13/bits/stl_vector.h:1483:26: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::matinvOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type ‘TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   31 |   void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) {              \
      |        ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:473:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  473 | TMB_ATOMIC_VECTOR_FUNCTION(
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1717 |       OperatorBase::forward(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type ‘const TMBad::ForwardArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function ‘void atomic::matinvOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]’:
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type ‘TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
   37 |   template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) {  \
      |                             ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:223:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION_DEFINE’
  223 | TMB_ATOMIC_VECTOR_FUNCTION_DEFINE(              \
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:473:1: note: in expansion of macro ‘TMB_ATOMIC_VECTOR_FUNCTION’
  473 | TMB_ATOMIC_VECTOR_FUNCTION(
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]’,
    inlined from ‘void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > > >]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
In member function ‘void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]’,
    inlined from ‘void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]’ at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
 1721 |       OperatorBase::reverse(args);
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type ‘const TMBad::ReverseArgs<TMBad::global::ad_aug>’ changed in GCC 7.1
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/usr/lib/R/site-library/TMB/include' -I'/usr/lib/R/site-library/RcppEigen/include'    -fopenmp -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c utils.cpp -o utils.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o glmmTMB.so glmmTMB.o utils.o -fopenmp -L/usr/lib/R/lib -lR
"/usr/lib/R/bin/Rscript" -e "cat(as.character(packageVersion('TMB')), '\n', sep="", file='../inst/TMB-version')"
"/usr/lib/R/bin/Rscript" -e "cat(as.character(packageVersion('Matrix')), '\n', sep="", file='../inst/Matrix-version')"
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-glmmtmb/usr/lib/R/site-library/00LOCK-r-cran-glmmtmb-1.1.8+dfsg/00new/glmmTMB/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning in checkMatrixPackageVersion() :
  Package version inconsistency detected.
TMB was built with Matrix version 1.6.1.1
Current Matrix version is 1.6.3
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in checkMatrixPackageVersion() :
  Package version inconsistency detected.
TMB was built with Matrix version 1.6.1.1
Current Matrix version is 1.6.3
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning in checkMatrixPackageVersion() :
  Package version inconsistency detected.
TMB was built with Matrix version 1.6.1.1
Current Matrix version is 1.6.3
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
** testing if installed package keeps a record of temporary installation path
* DONE (glmmTMB)
W: Ignoring specified R dependency: R (>= 3.2.0)
I: Using r-cran-glmmtmb for Recommends:glmmtmb
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-lattice for Suggests:lattice
I: Using r-cran-ggplot2 for Suggests:ggplot2 (>= 2.2.1)
I: Using r-cran-mlmrev for Suggests:mlmRev
I: Using r-cran-bbmle for Suggests:bbmle (>= 1.0.19)
I: Using r-cran-pscl for Suggests:pscl
I: Using r-cran-coda for Suggests:coda
I: Using r-cran-reshape2 for Suggests:reshape2
I: Using r-cran-car for Suggests:car (>= 3.0.6)
I: Using r-cran-emmeans for Suggests:emmeans (>= 1.4)
I: Using r-cran-estimability for Suggests:estimability
W: Cannot find a debian package for Suggests:DHARMa
I: Using r-cran-multcomp for Suggests:multcomp
W: Cannot find a debian package for Suggests:MuMIn
I: Using r-cran-effects for Suggests:effects (>= 4.0-1)
W: Cannot find a debian package for Suggests:dotwhisker
I: Using r-cran-broom for Suggests:broom
I: Using r-cran-broom.mixed for Suggests:broom.mixed
I: Using r-cran-plyr for Suggests:plyr
I: Using r-cran-png for Suggests:png
I: Using r-cran-boot for Suggests:boot
W: Cannot find a debian package for Suggests:texreg
I: Using r-cran-xtable for Suggests:xtable
W: Cannot find a debian package for Suggests:huxtable
W: Cannot find a debian package for Suggests:mvabund
I: Using r-cran-lme4 for Imports:lme4 (>= 1.1-18.9000)
I: Using r-cran-matrix by changing version to  for Imports:Matrix
I: Using r-cran-nlme for Imports:nlme
I: Using r-cran-numderiv for Imports:numDeriv
I: Using r-cran-mgcv for Imports:mgcv
I: Using r-cran-tmb for LinkingTo:TMB
I: Using r-cran-rcppeigen for LinkingTo:RcppEigen
I: Use r-cran-glmmtmb as Debian binary package for variables substitution
   dh_installdocs -a -O--buildsystem=R
   dh_installchangelogs -a -O--buildsystem=R
   dh_installsystemduser -a -O--buildsystem=R
   dh_perl -a -O--buildsystem=R
   dh_link -a -O--buildsystem=R
   dh_strip_nondeterminism -a -O--buildsystem=R
   dh_compress -a -O--buildsystem=R
   dh_fixperms -a -O--buildsystem=R
   dh_missing -a -O--buildsystem=R
   dh_dwz -a -O--buildsystem=R
   dh_strip -a -O--buildsystem=R
   dh_makeshlibs -a -O--buildsystem=R
   dh_shlibdeps -a -O--buildsystem=R
   dh_installdeb -a -O--buildsystem=R
   debian/rules override_dh_gencontrol
make[1]: Entering directory '/<<PKGBUILDDIR>>'
tmbversion=`dpkg -l r-cran-tmb | grep 'ii' | sed 's/^.*r-cran-tmb[[:space:]]\+\([0-9.-]\+\)[[:space:]]\+.*/\1/'`; \
sed -i "s/r-cran-tmb[^,]*/r-cran-tmb (>= ${tmbversion})/" debian/*substvars
dh_gencontrol
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_md5sums -a -O--buildsystem=R
   dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-glmmtmb-dbgsym' in '../r-cran-glmmtmb-dbgsym_1.1.8+dfsg-2_armhf.deb'.
dpkg-deb: building package 'r-cran-glmmtmb' in '../r-cran-glmmtmb_1.1.8+dfsg-2_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../r-cran-glmmtmb_1.1.8+dfsg-2_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../r-cran-glmmtmb_1.1.8+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-11-29T07:01:52Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-cran-glmmtmb_1.1.8+dfsg-2_armhf.changes:
------------------------------------------

Format: 1.8
Date: Mon, 27 Nov 2023 08:58:39 +0100
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb r-cran-glmmtmb-dbgsym
Architecture: armhf
Version: 1.1.8+dfsg-2
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-cran-glmmtmb - Generalized Linear Mixed Models using Template Model Builder
Changes:
 r-cran-glmmtmb (1.1.8+dfsg-2) unstable; urgency=medium
 .
   * Add versioned depends to r-cran-tmb that was used at package build time
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Files:
 e5d26b3e4a4234a9414f1706a1ebc7a8 3046884 debug optional r-cran-glmmtmb-dbgsym_1.1.8+dfsg-2_armhf.deb
 af32d3ba217ee87b32e341c4dae6677c 11194 gnu-r optional r-cran-glmmtmb_1.1.8+dfsg-2_armhf.buildinfo
 bcd743ac1be61a4649481f00a61c199f 4750024 gnu-r optional r-cran-glmmtmb_1.1.8+dfsg-2_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb r-cran-glmmtmb-dbgsym
Architecture: armhf
Version: 1.1.8+dfsg-2
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Wed, 29 Nov 2023 07:01:52 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-13),
 autotools-dev (= 20220109.1),
 base-files (= 13+rpi1),
 base-passwd (= 3.6.2),
 bash (= 5.2.15-2),
 binutils (= 2.41-6+rpi1),
 binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
 binutils-common (= 2.41-6+rpi1),
 bsdextrautils (= 2.39.2-6),
 bsdutils (= 1:2.39.2-6),
 build-essential (= 12.9),
 bzip2 (= 1.0.8-5+b2),
 ca-certificates (= 20230311),
 coreutils (= 9.1-1),
 cpp (= 4:13.2.0-1+rpi1),
 cpp-12 (= 12.3.0-10+rpi1),
 cpp-13 (= 13.2.0-5+rpi1),
 dash (= 0.5.12-6),
 dctrl-tools (= 2.24-3),
 debconf (= 1.5.82),
 debhelper (= 13.11.8),
 debianutils (= 5.14),
 dh-autoreconf (= 20),
 dh-r (= 20231109),
 dh-strip-nondeterminism (= 1.13.1-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.1+rpi1),
 dpkg-dev (= 1.22.1+rpi1),
 dwz (= 0.15-1),
 file (= 1:5.45-2),
 findutils (= 4.9.0-5),
 fontconfig (= 2.14.2-6),
 fontconfig-config (= 2.14.2-6),
 fonts-dejavu-core (= 2.37-8),
 fonts-dejavu-mono (= 2.37-8),
 g++ (= 4:13.2.0-1+rpi1),
 g++-13 (= 13.2.0-5+rpi1),
 gcc (= 4:13.2.0-1+rpi1),
 gcc-12 (= 12.3.0-10+rpi1),
 gcc-12-base (= 12.3.0-10+rpi1),
 gcc-13 (= 13.2.0-5+rpi1),
 gcc-13-base (= 13.2.0-5+rpi1),
 gettext (= 0.21-13),
 gettext-base (= 0.21-13),
 gfortran (= 4:13.2.0-1+rpi1),
 gfortran-13 (= 13.2.0-5+rpi1),
 grep (= 3.11-3),
 groff-base (= 1.23.0-3),
 gzip (= 1.12-1),
 hostname (= 3.23+nmu1),
 icu-devtools (= 72.1-4),
 init-system-helpers (= 1.65.2),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.1-3),
 libalgorithm-c3-perl (= 0.11-2),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 13.2.0-5+rpi1),
 libatomic1 (= 13.2.0-5+rpi1),
 libattr1 (= 1:2.5.1-4),
 libaudit-common (= 1:3.1.1-1),
 libaudit1 (= 1:3.1.1-1),
 libb-hooks-endofscope-perl (= 0.26-1),
 libb-hooks-op-check-perl (= 0.22-2+b1),
 libbinutils (= 2.41-6+rpi1),
 libblas-dev (= 3.11.0-2),
 libblas3 (= 3.11.0-2),
 libblkid1 (= 2.39.2-6),
 libbrotli1 (= 1.1.0-2),
 libbsd0 (= 0.11.7-4),
 libbz2-1.0 (= 1.0.8-5+b2),
 libbz2-dev (= 1.0.8-5+b2),
 libc-bin (= 2.37-12+rpi2),
 libc-dev-bin (= 2.37-12+rpi2),
 libc6 (= 2.37-12+rpi2),
 libc6-dev (= 2.37-12+rpi2),
 libcairo2 (= 1.18.0-1),
 libcap-ng0 (= 0.8.3-1+b1),
 libcap2 (= 1:2.66-4),
 libcc1-0 (= 13.2.0-5+rpi1),
 libclass-c3-perl (= 0.35-2),
 libclass-load-perl (= 0.25-2),
 libclass-load-xs-perl (= 0.10-2+b1),
 libclone-perl (= 0.46-1),
 libcom-err2 (= 1.47.0-2),
 libcrypt-dev (= 1:4.4.36-2),
 libcrypt1 (= 1:4.4.36-2),
 libctf-nobfd0 (= 2.41-6+rpi1),
 libctf0 (= 2.41-6+rpi1),
 libcurl3-gnutls (= 8.4.0-2+rpi1),
 libcurl4 (= 8.4.0-2+rpi1),
 libdata-optlist-perl (= 0.114-1),
 libdatrie1 (= 0.2.13-2+b2),
 libdb5.3 (= 5.3.28+dfsg2-2),
 libdebconfclient0 (= 0.271),
 libdebhelper-perl (= 13.11.8),
 libdeflate0 (= 1.18-1),
 libdevel-callchecker-perl (= 0.008-2),
 libdevel-globaldestruction-perl (= 0.14-4),
 libdevel-overloadinfo-perl (= 0.007-1),
 libdevel-stacktrace-perl (= 2.0400-2),
 libdist-checkconflicts-perl (= 0.11-2),
 libdpkg-perl (= 1.22.1+rpi1),
 libdynaloader-functions-perl (= 0.003-3),
 libelf1 (= 0.188-2.1+rpi1),
 libencode-locale-perl (= 1.05-3),
 libeval-closure-perl (= 0.14-3),
 libexpat1 (= 2.5.0-2),
 libffi8 (= 3.4.4-1),
 libfile-stripnondeterminism-perl (= 1.13.1-1),
 libfile-which-perl (= 1.27-2),
 libfontconfig1 (= 2.14.2-6),
 libfreetype6 (= 2.13.2+dfsg-1),
 libfribidi0 (= 1.0.13-3),
 libgcc-12-dev (= 12.3.0-10+rpi1),
 libgcc-13-dev (= 13.2.0-5+rpi1),
 libgcc-s1 (= 13.2.0-5+rpi1),
 libgcrypt20 (= 1.10.2-3),
 libgdbm-compat4 (= 1.23-3),
 libgdbm6 (= 1.23-3),
 libgfortran-13-dev (= 13.2.0-5+rpi1),
 libgfortran5 (= 13.2.0-5+rpi1),
 libglib2.0-0 (= 2.78.1-4),
 libgmp10 (= 2:6.3.0+dfsg-2),
 libgnutls30 (= 3.8.1-4),
 libgomp1 (= 13.2.0-5+rpi1),
 libgpg-error0 (= 1.47-2),
 libgraphite2-3 (= 1.3.14-1),
 libgssapi-krb5-2 (= 1.20.1-4),
 libharfbuzz0b (= 8.0.1-1),
 libhogweed6 (= 3.9.1-2),
 libhttp-date-perl (= 6.06-1),
 libhttp-message-perl (= 6.45-1),
 libice6 (= 2:1.0.10-1),
 libicu-dev (= 72.1-4),
 libicu72 (= 72.1-4),
 libidn2-0 (= 2.3.4-1),
 libio-html-perl (= 1.004-3),
 libisl23 (= 0.26-3),
 libjansson4 (= 2.14-2),
 libjbig0 (= 2.1-6.1),
 libjpeg-dev (= 1:2.1.5-2),
 libjpeg62-turbo (= 1:2.1.5-2),
 libjpeg62-turbo-dev (= 1:2.1.5-2),
 libk5crypto3 (= 1.20.1-4),
 libkeyutils1 (= 1.6.3-2),
 libkrb5-3 (= 1.20.1-4),
 libkrb5support0 (= 1.20.1-4),
 liblapack-dev (= 3.11.0-2),
 liblapack3 (= 3.11.0-2),
 libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1),
 liblerc4 (= 4.0.0+ds-3),
 liblwp-mediatypes-perl (= 6.04-2),
 liblz4-1 (= 1.9.4-1+rpi1+b1),
 liblzma-dev (= 5.4.5-0.1),
 liblzma5 (= 5.4.5-0.1),
 libmagic-mgc (= 1:5.45-2),
 libmagic1 (= 1:5.45-2),
 libmd0 (= 1.1.0-1),
 libmodule-implementation-perl (= 0.09-2),
 libmodule-runtime-conflicts-perl (= 0.003-2),
 libmodule-runtime-perl (= 0.016-2),
 libmoose-perl (= 2.2206-1),
 libmount1 (= 2.39.2-6),
 libmpc3 (= 1.3.1-1),
 libmpfr6 (= 4.2.1-1),
 libmro-compat-perl (= 0.15-2),
 libnamespace-clean-perl (= 0.27-2),
 libncurses-dev (= 6.4+20231121-1),
 libncurses6 (= 6.4+20231121-1),
 libncursesw6 (= 6.4+20231121-1),
 libnettle8 (= 3.9.1-2),
 libnghttp2-14 (= 1.58.0-1),
 libnlopt0 (= 2.7.1-5+b1),
 libnsl-dev (= 1.3.0-2),
 libnsl2 (= 1.3.0-2),
 libp11-kit0 (= 0.25.0-5),
 libpackage-deprecationmanager-perl (= 0.18-1),
 libpackage-stash-perl (= 0.40-1),
 libpackage-stash-xs-perl (= 0.30-1+b1),
 libpam-modules (= 1.5.2-9.1),
 libpam-modules-bin (= 1.5.2-9.1),
 libpam-runtime (= 1.5.2-9.1),
 libpam0g (= 1.5.2-9.1),
 libpango-1.0-0 (= 1.51.0+ds-3),
 libpangocairo-1.0-0 (= 1.51.0+ds-3),
 libpangoft2-1.0-0 (= 1.51.0+ds-3),
 libpaper-utils (= 1.1.29),
 libpaper1 (= 1.1.29),
 libparams-classify-perl (= 0.015-2+b1),
 libparams-util-perl (= 1.102-2+b1),
 libpcre2-16-0 (= 10.42-4),
 libpcre2-32-0 (= 10.42-4),
 libpcre2-8-0 (= 10.42-4),
 libpcre2-dev (= 10.42-4),
 libpcre2-posix3 (= 10.42-4),
 libperl5.36 (= 5.36.0-9),
 libpipeline1 (= 1.5.7-1),
 libpixman-1-0 (= 0.42.2-1),
 libpkgconf3 (= 1.8.1-1),
 libpng-dev (= 1.6.40-2),
 libpng16-16 (= 1.6.40-2),
 libpsl5 (= 0.21.2-1+b1),
 libreadline-dev (= 8.2-1.3),
 libreadline8 (= 8.2-1.3),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libsasl2-2 (= 2.1.28+dfsg1-3),
 libsasl2-modules-db (= 2.1.28+dfsg1-3),
 libseccomp2 (= 2.5.4-1+rpi1+b1),
 libselinux1 (= 3.5-1),
 libsframe1 (= 2.41-6+rpi1),
 libsharpyuv0 (= 1.3.2-0.3),
 libsm6 (= 2:1.2.3-1),
 libsmartcols1 (= 2.39.2-6),
 libssh2-1 (= 1.11.0-2),
 libssl3 (= 3.0.11-1),
 libstdc++-13-dev (= 13.2.0-5+rpi1),
 libstdc++6 (= 13.2.0-5+rpi1),
 libsub-exporter-perl (= 0.990-1),
 libsub-exporter-progressive-perl (= 0.001013-3),
 libsub-identify-perl (= 0.14-3),
 libsub-install-perl (= 0.929-1),
 libsub-name-perl (= 0.27-1),
 libsub-override-perl (= 0.09-4),
 libswitch-perl (= 2.17-3),
 libsystemd0 (= 254.5-1+rpi1),
 libtasn1-6 (= 4.19.0-3),
 libtcl8.6 (= 8.6.13+dfsg-2),
 libthai-data (= 0.1.29-1),
 libthai0 (= 0.1.29-1),
 libtiff6 (= 4.5.1+git230720-1),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.4+20231121-1),
 libtirpc-common (= 1.3.3+ds-1),
 libtirpc-dev (= 1.3.3+ds-1),
 libtirpc3 (= 1.3.3+ds-1),
 libtk8.6 (= 8.6.13-2),
 libtool (= 2.4.7-7),
 libtry-tiny-perl (= 0.31-2),
 libubsan1 (= 13.2.0-5+rpi1),
 libuchardet0 (= 0.0.7-1),
 libudev1 (= 254.5-1+rpi1),
 libunistring5 (= 1.1-2),
 liburi-perl (= 5.21-1),
 libuuid1 (= 2.39.2-6),
 libuv1 (= 1.46.0-2+rpi1),
 libvariable-magic-perl (= 0.63-1+b1),
 libwebp7 (= 1.3.2-0.3),
 libwww-curl-perl (= 4.17-10),
 libwww-curl-simple-perl (= 0.100191-3),
 libx11-6 (= 2:1.8.7-1),
 libx11-data (= 2:1.8.7-1),
 libxau6 (= 1:1.0.9-1),
 libxcb-render0 (= 1.15-1),
 libxcb-shm0 (= 1.15-1),
 libxcb1 (= 1.15-1),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.4-1),
 libxft2 (= 2.3.6-1),
 libxml2 (= 2.9.14+dfsg-1.3),
 libxmuu1 (= 2:1.1.3-3),
 libxrender1 (= 1:0.9.10-1.1),
 libxss1 (= 1:1.2.3-1),
 libxt6 (= 1:1.2.1-1.1),
 libzstd1 (= 1.5.5+dfsg2-2),
 linux-libc-dev (= 6.5.6-1+rpi1),
 littler (= 0.3.18-2),
 login (= 1:4.13+dfsg1-3),
 lsb-base (= 11.6+rpi1),
 m4 (= 1.4.19-4),
 make (= 4.3-4.1),
 man-db (= 2.12.0-1),
 mawk (= 1.3.4.20230808-1),
 ncurses-base (= 6.4+20231121-1),
 ncurses-bin (= 6.4+20231121-1),
 openssl (= 3.0.11-1),
 patch (= 2.7.6-7),
 perl (= 5.36.0-9),
 perl-base (= 5.36.0-9),
 perl-modules-5.36 (= 5.36.0-9),
 pkg-config (= 1.8.1-1),
 pkgconf (= 1.8.1-1),
 pkgconf-bin (= 1.8.1-1),
 po-debconf (= 1.0.21+nmu1),
 r-base-core (= 4.3.2-1),
 r-base-dev (= 4.3.2-1),
 r-cran-boot (= 1.3-28.1-1),
 r-cran-brio (= 1.1.3-1),
 r-cran-callr (= 3.7.3-2),
 r-cran-cli (= 3.6.1-1),
 r-cran-crayon (= 1.5.2-1),
 r-cran-desc (= 1.4.2-1),
 r-cran-diffobj (= 0.3.5-1),
 r-cran-digest (= 0.6.33-1),
 r-cran-ellipsis (= 0.3.2-2),
 r-cran-evaluate (= 0.23-1),
 r-cran-fansi (= 1.0.5-1),
 r-cran-fs (= 1.6.3+dfsg-1),
 r-cran-glue (= 1.6.2-1),
 r-cran-jsonlite (= 1.8.7+dfsg-1),
 r-cran-lattice (= 0.22-5-1),
 r-cran-lifecycle (= 1.0.4+dfsg-1),
 r-cran-littler (= 0.3.18-2),
 r-cran-lme4 (= 1.1-35.1-4),
 r-cran-magrittr (= 2.0.3-1),
 r-cran-mass (= 7.3-60-2),
 r-cran-matrix (= 1.6-3-1),
 r-cran-mgcv (= 1.9-0-1),
 r-cran-minqa (= 1.2.6-1),
 r-cran-nlme (= 3.1.163-1),
 r-cran-nloptr (= 2.0.3-1),
 r-cran-numderiv (= 2016.8-1.1-3),
 r-cran-pillar (= 1.9.0+dfsg-1),
 r-cran-pkgconfig (= 2.0.3-2),
 r-cran-pkgkitten (= 0.2.3-1),
 r-cran-pkgload (= 1.3.2.1-1),
 r-cran-praise (= 1.0.0-4),
 r-cran-processx (= 3.8.2-1),
 r-cran-ps (= 1.7.5-1),
 r-cran-r6 (= 2.5.1-1),
 r-cran-rcpp (= 1.0.11-1),
 r-cran-rcppeigen (= 0.3.3.9.4-1),
 r-cran-rematch2 (= 2.1.2-2),
 r-cran-rlang (= 1.1.2-1),
 r-cran-rprojroot (= 2.0.4-1),
 r-cran-statmod (= 1.5.0-1),
 r-cran-testthat (= 3.2.0-1),
 r-cran-tibble (= 3.2.1+dfsg-2),
 r-cran-tmb (= 1.9.6-8),
 r-cran-utf8 (= 1.2.4-1),
 r-cran-vctrs (= 0.6.4-1),
 r-cran-waldo (= 0.5.2-1),
 r-cran-withr (= 2.5.0-1),
 readline-common (= 8.2-1.3),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-1),
 sensible-utils (= 0.0.20),
 sysvinit-utils (= 3.08-3),
 tar (= 1.34+dfsg-1.2),
 tzdata (= 2023c-10),
 ucf (= 3.0043+nmu1),
 unzip (= 6.0-28),
 usr-is-merged (= 37),
 util-linux (= 2.39.2-6),
 x11-common (= 1:7.7+23),
 xauth (= 1:1.1.2-1),
 xdg-utils (= 1.1.3-4.1),
 xz-utils (= 5.4.5-0.1),
 zip (= 3.0-13),
 zlib1g (= 1:1.2.13.dfsg-3),
 zlib1g-dev (= 1:1.2.13.dfsg-3)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 SOURCE_DATE_EPOCH="1701071919"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-cran-glmmtmb-dbgsym_1.1.8+dfsg-2_armhf.deb
--------------------------------------------

 new Debian package, version 2.0.
 size 3046884 bytes: control archive=540 bytes.
     403 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: r-cran-glmmtmb-dbgsym
 Source: r-cran-glmmtmb
 Version: 1.1.8+dfsg-2
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 4388
 Depends: r-cran-glmmtmb (= 1.1.8+dfsg-2)
 Section: debug
 Priority: optional
 Description: debug symbols for r-cran-glmmtmb
 Build-Ids: 86c4d73fa101d8eae009878b61f68f0e9a64b4ff

drwxr-xr-x root/root         0 2023-11-27 07:58 ./
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drwxr-xr-x root/root         0 2023-11-27 07:58 ./usr/share/
drwxr-xr-x root/root         0 2023-11-27 07:58 ./usr/share/doc/
lrwxrwxrwx root/root         0 2023-11-27 07:58 ./usr/share/doc/r-cran-glmmtmb-dbgsym -> r-cran-glmmtmb


r-cran-glmmtmb_1.1.8+dfsg-2_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 4750024 bytes: control archive=4252 bytes.
    1344 bytes,    17 lines      control
   10478 bytes,   120 lines      md5sums
 Package: r-cran-glmmtmb
 Version: 1.1.8+dfsg-2
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 8147
 Depends: r-api-4.0, r-cran-lme4 (>= 1.1-18.9000), r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-mgcv, r-cran-tmb (>= 1.9.6-8), r-cran-rcppeigen, libc6 (>= 2.34), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libstdc++6 (>= 13.1)
 Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat, r-cran-mass, r-cran-lattice, r-cran-ggplot2 (>= 2.2.1), r-cran-mlmrev, r-cran-bbmle (>= 1.0.19), r-cran-pscl, r-cran-coda, r-cran-reshape2, r-cran-car (>= 3.0.6), r-cran-emmeans (>= 1.4), r-cran-estimability, r-cran-multcomp, r-cran-effects (>= 4.0-1), r-cran-broom, r-cran-broom.mixed, r-cran-plyr, r-cran-png, r-cran-boot, r-cran-xtable
 Section: gnu-r
 Priority: optional
 Homepage: https://cran.r-project.org/package=glmmTMB
 Description: Generalized Linear Mixed Models using Template Model Builder
  Fit linear and generalized linear mixed models with various
  extensions, including zero-inflation. The models are fitted using maximum
  likelihood estimation via 'TMB' (Template Model Builder). Random effects are
  assumed to be Gaussian on the scale of the linear predictor and are integrated
  out using the Laplace approximation. Gradients are calculated using automatic
  differentiation.

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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 26084
Build-Time: 151
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 143
Job: r-cran-glmmtmb_1.1.8+dfsg-2
Machine Architecture: arm64
Package: r-cran-glmmtmb
Package-Time: 303
Source-Version: 1.1.8+dfsg-2
Space: 26084
Status: successful
Version: 1.1.8+dfsg-2
--------------------------------------------------------------------------------
Finished at 2023-11-29T07:01:52Z
Build needed 00:05:03, 26084k disk space

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