r-cran-glmmtmb →
1.1.8+dfsg-1 →
armhf → 2023-10-25 06:36:09
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| r-cran-glmmtmb 1.1.8+dfsg-1 (armhf) Wed, 25 Oct 2023 06:19:47 +0000 |
+==============================================================================+
Package: r-cran-glmmtmb
Version: 1.1.8+dfsg-1
Source Version: 1.1.8+dfsg-1
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/trixie-staging-armhf-sbuild-d9a33bd5-d1cb-4754-88a0-7b63829011e6' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.2 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.9 MB]
Fetched 29.1 MB in 9s (3117 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-glmmtmb' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3764 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-cran-glmmtmb 1.1.8+dfsg-1 (dsc) [2573 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-cran-glmmtmb 1.1.8+dfsg-1 (tar) [3747 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-cran-glmmtmb 1.1.8+dfsg-1 (diff) [14.8 kB]
Fetched 3764 kB in 0s (9720 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-6fLlKE/r-cran-glmmtmb-1.1.8+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-6fLlKE' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-daF9C5/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-daF9C5/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-daF9C5/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (8094 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sensible-utils sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 6 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (76.1 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 11866 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-tmb (>= 1.9.0), r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-mgcv, r-cran-rcppeigen
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-tmb (>= 1.9.0), r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-mgcv, r-cran-rcppeigen
dpkg-deb: building package 'sbuild-build-depends-r-cran-glmmtmb-dummy' in '/<<BUILDDIR>>/resolver-daF9C5/apt_archive/sbuild-build-depends-r-cran-glmmtmb-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-glmmtmb-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ Sources [559 B]
Get:5 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ Packages [635 B]
Fetched 2527 B in 0s (12.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-glmmtmb build dependencies (apt-based resolver)
--------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap netbase sgml-base util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-12 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libncursesw6 libnghttp2-14 libnlopt0 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3
libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1 libsharpyuv0 libsm6
libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6
libtimedate-perl libtinfo6 libtk8.6 libtool libtry-tiny-perl libuchardet0
liburi-perl libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db ncurses-base ncurses-bin openssl pkg-config
pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-cran-boot
r-cran-brio r-cran-callr r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj
r-cran-digest r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fs
r-cran-glue r-cran-jsonlite r-cran-lattice r-cran-lifecycle r-cran-littler
r-cran-lme4 r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv
r-cran-minqa r-cran-nlme r-cran-nloptr r-cran-numderiv r-cran-pillar
r-cran-pkgconfig r-cran-pkgkitten r-cran-pkgload r-cran-praise
r-cran-processx r-cran-ps r-cran-r6 r-cran-rcpp r-cran-rcppeigen
r-cran-rematch2 r-cran-rlang r-cran-rprojroot r-cran-statmod r-cran-testthat
r-cran-tibble r-cran-tmb r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr
ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc
low-memory-monitor icu-doc liblzma-doc ncurses-doc libscalar-number-perl
readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl
libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-cran-covr
r-cran-spelling r-cran-htmltools r-cran-htmlwidgets r-cran-knitr
r-cran-rmarkdown r-cran-rstudioapi r-cran-whoami r-cran-unitizer r-cran-dbi
r-cran-dplyr r-cran-forcats r-cran-ggplot2 r-cran-r.utils r-cran-rsqlite
r-cran-stringr r-cran-lintr r-cran-tidyverse r-cran-getopt r-cran-bit64
r-cran-formattable r-cran-nanotime r-cran-palmerpenguins r-cran-scales
r-cran-stringi r-cran-survival r-cran-units r-cran-vdiffr r-cran-curl
r-cran-pingr r-cran-webfakes r-cran-inline r-cran-usethis r-cran-bench
r-cran-blob r-cran-here r-cran-hms r-cran-pkgbuild r-cran-purrr r-cran-tidyr
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-cliapp r-cran-mockery
r-cran-covr r-cran-gh r-cran-ggplot2 r-cran-knitr r-cran-rmarkdown
r-cran-spelling r-cran-httr r-cran-r.rsp r-cran-sf r-cran-lubridate
r-cran-bitops r-cran-mathjaxr r-cran-mockr r-cran-pkgbuild r-cran-remotes
r-cran-rstudioapi r-cran-codetools r-cran-curl r-cran-webfakes r-cran-shiny
r-cran-usethis r-cran-xml2 r-cran-data.table r-cran-rsqlite r-cran-dplyr
r-cran-formattable r-cran-bit64 r-cran-generics r-cran-pkgdown
r-cran-zeallot r-cran-dbi libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
gettext-base gfortran gfortran-12 groff-base icu-devtools intltool-debian
libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-12-dev libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b
libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
libmagic-mgc libmagic1 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
libnghttp2-14 libnlopt0 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0
libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3
libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1 libsharpyuv0 libsm6
libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff6
libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libuv1 libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db openssl pkg-config pkgconf pkgconf-bin
po-debconf r-base-core r-base-dev r-cran-boot r-cran-brio r-cran-callr
r-cran-cli r-cran-crayon r-cran-desc r-cran-diffobj r-cran-digest
r-cran-ellipsis r-cran-evaluate r-cran-fansi r-cran-fs r-cran-glue
r-cran-jsonlite r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-lme4
r-cran-magrittr r-cran-mass r-cran-matrix r-cran-mgcv r-cran-minqa
r-cran-nlme r-cran-nloptr r-cran-numderiv r-cran-pillar r-cran-pkgconfig
r-cran-pkgkitten r-cran-pkgload r-cran-praise r-cran-processx r-cran-ps
r-cran-r6 r-cran-rcpp r-cran-rcppeigen r-cran-rematch2 r-cran-rlang
r-cran-rprojroot r-cran-statmod r-cran-testthat r-cran-tibble r-cran-tmb
r-cran-utf8 r-cran-vctrs r-cran-waldo r-cran-withr
sbuild-build-depends-r-cran-glmmtmb-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
libncursesw6 libtinfo6 ncurses-base ncurses-bin
4 upgraded, 217 newly installed, 0 to remove and 2 not upgraded.
Need to get 125 MB of archives.
After this operation, 334 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-daF9C5/apt_archive ./ sbuild-build-depends-r-cran-glmmtmb-dummy 0.invalid.0 [928 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf ncurses-bin armhf 6.4+20231016-1 [419 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf ncurses-base all 6.4+20231016-1 [266 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf libtinfo6 armhf 6.4+20231016-1 [324 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libncursesw6 armhf 6.4+20231016-1 [106 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-4 [80.8 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.11-1 [1367 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.7 [82.1 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.7 [956 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:43 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.57.0-1 [61.6 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-2 [195 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.4.0-2 [363 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.0-2+rpi1 [1249 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-4+rpi1 [247 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-2 [187 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-2 [40.4 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-2 [30.0 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.1-4 [26.3 MB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libgfortran-12-dev armhf 12.3.0-10+rpi1 [285 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf gfortran-12 armhf 12.3.0-10+rpi1 [7527 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:12.2.0-3+rpi1 [1424 B]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20231016-1 [80.0 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20231016-1 [290 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-1.3 [123 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-2 [336 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.4-0.1 [269 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.1-4 [4512 B]
Get:126 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.44-2 [81.8 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.4.0-2 [358 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20230912 [40.8 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libnlopt0 armhf 2.7.1-5 [140 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libuv1 armhf 1.44.2-1+rpi1 [125 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.18-2 [86.0 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf littler all 0.3.18-2 [14.8 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf r-cran-boot all 1.3-28.1-1 [620 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf r-cran-brio armhf 1.1.3-1 [34.8 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf r-cran-ps armhf 1.7.5-1 [305 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf r-cran-processx armhf 3.8.2-1 [333 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf r-cran-callr all 3.7.3-2 [426 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf r-cran-cli armhf 3.6.1-1 [1307 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf r-cran-rprojroot all 2.0.3-1 [119 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf r-cran-desc all 1.4.2-1 [348 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf r-cran-diffobj armhf 0.3.5-1 [1111 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf r-cran-digest armhf 0.6.33-1 [185 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf r-cran-rlang armhf 1.1.1-1 [1653 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf r-cran-evaluate all 0.22-1 [96.2 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf r-cran-fansi armhf 1.0.4-1 [612 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf r-cran-fs armhf 1.6.3+dfsg-1 [224 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-cran-jsonlite armhf 1.8.7+dfsg-1 [439 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.21-9-1 [1376 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-1-1 [3777 kB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-cran-mass armhf 7.3-60-2 [1114 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-cran-nlme armhf 3.1.163-1 [2274 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgkitten all 0.2.3-1 [26.7 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcpp armhf 1.0.11-1 [2043 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-cran-minqa armhf 1.2.6-1 [100 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgload all 1.3.2.1-1 [206 kB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf r-cran-praise all 1.0.0-4 [20.1 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf r-cran-utf8 armhf 1.2.3-1 [129 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf r-cran-vctrs armhf 0.6.4-1 [1336 kB]
Get:209 http://172.17.4.1/private trixie-staging/main armhf r-cran-pillar all 1.9.0+dfsg-1 [463 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf r-cran-tibble armhf 3.2.1+dfsg-2 [422 kB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf r-cran-rematch2 all 2.1.2-2 [46.3 kB]
Get:213 http://172.17.4.1/private trixie-staging/main armhf r-cran-waldo all 0.5.1-1 [120 kB]
Get:214 http://172.17.4.1/private trixie-staging/main armhf r-cran-testthat armhf 3.2.0-1 [1618 kB]
Get:215 http://172.17.4.1/private trixie-staging/main armhf r-cran-nloptr armhf 2.0.3-1 [351 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcppeigen armhf 0.3.3.9.3-1 [1164 kB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf r-cran-statmod armhf 1.5.0-1 [295 kB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf r-cran-lme4 armhf 1.1-34-1 [4077 kB]
Get:219 http://172.17.4.1/private trixie-staging/main armhf r-cran-mgcv armhf 1.9-0-1 [3196 kB]
Get:220 http://172.17.4.1/private trixie-staging/main armhf r-cran-numderiv all 2016.8-1.1-3 [115 kB]
Get:221 http://172.17.4.1/private trixie-staging/main armhf r-cran-tmb armhf 1.9.6-1 [989 kB]
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.57.0-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
Setting up gettext-base (0.21-13) ...
Setting up m4 (1.4.19-4) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libnlopt0:armhf (2.7.1-5) ...
Setting up file (1:5.45-2) ...
Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libpcre2-16-0:armhf (10.42-4) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up zip (3.0-13) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.42-4) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.1-1) ...
Setting up libuv1:armhf (1.44.2-1+rpi1) ...
Setting up libalgorithm-c3-perl (0.11-2) ...
Setting up libjpeg62-turbo:armhf (1:2.1.5-2) ...
Setting up libswitch-perl (2.17-3) ...
Setting up libx11-data (2:1.8.7-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:2.1.5-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
Setting up libncurses6:armhf (6.4+20231016-1) ...
Setting up libfribidi0:armhf (1.0.13-3) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16:armhf (1.6.40-2) ...
Setting up libvariable-magic-perl (0.63-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libtcl8.6:armhf (8.6.13+dfsg-2) ...
Setting up autopoint (0.21-13) ...
Setting up libb-hooks-op-check-perl:armhf (0.22-2+b1) ...
Setting up icu-devtools (72.1-4) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up ucf (3.0043+nmu1) ...
Setting up pkgconf-bin (1.8.1-1) ...
Setting up libparams-util-perl (1.102-2+b1) ...
Setting up libgfortran5:armhf (13.2.0-4+rpi1) ...
Setting up autoconf (2.71-3) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libwebp7:armhf (1.3.2-0.3) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up liblzma-dev:armhf (5.4.4-0.1) ...
Setting up libsub-name-perl:armhf (0.27-1) ...
Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-3) ...
Setting up libpcre2-posix3:armhf (10.42-4) ...
Setting up libtiff6:armhf (4.5.1+git230720-1) ...
Setting up libuchardet0:armhf (0.0.7-1) ...
Setting up libsub-override-perl (0.09-4) ...
Setting up libthai-data (0.1.29-1) ...
Setting up libdevel-globaldestruction-perl (0.14-4) ...
Setting up libssh2-1:armhf (1.11.0-2) ...
Setting up libdevel-stacktrace-perl (2.0400-2) ...
Setting up openssl (3.0.11-1) ...
Setting up libbsd0:armhf (0.11.7-4) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libicu-dev:armhf (72.1-4) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up liburi-perl (5.21-1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
Setting up libpaper1:armhf (1.1.29) ...
Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20231016-1) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-13) ...
Setting up libpcre2-dev:armhf (10.42-4) ...
Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up fontconfig-config (2.14.2-6) ...
Setting up libpng-dev:armhf (1.6.40-2) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (8.4.0-2) ...
Setting up libgfortran-12-dev:armhf (12.3.0-10+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.29) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up gfortran-12 (12.3.0-10+rpi1) ...
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.114-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.23.0-3) ...
Setting up libcurl4:armhf (8.4.0-2) ...
Setting up libx11-6:armhf (2:1.8.7-1) ...
Setting up libharfbuzz0b:armhf (8.0.1-1) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (6.44-2) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up man-db (2.11.2-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-3+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1.1) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up debhelper (13.11.7) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.2-6) ...
Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libpangoft2-1.0-0:armhf (1.51.0+ds-2) ...
Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-2) ...
Setting up r-base-core (4.3.1-4) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-lattice (0.21-9-1) ...
Setting up r-cran-ps (1.7.5-1) ...
Setting up r-cran-nlme (3.1.163-1) ...
Setting up r-cran-statmod (1.5.0-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.3-1) ...
Setting up r-cran-numderiv (2016.8-1.1-3) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-littler (0.3.18-2) ...
Setting up r-cran-fs (1.6.3+dfsg-1) ...
Setting up r-cran-rcpp (1.0.11-1) ...
Setting up r-cran-brio (1.1.3-1) ...
Setting up r-cran-boot (1.3-28.1-1) ...
Setting up r-cran-diffobj (0.3.5-1) ...
Setting up r-cran-rlang (1.1.1-1) ...
Setting up r-base-dev (4.3.1-4) ...
Setting up littler (0.3.18-2) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-processx (3.8.2-1) ...
Setting up r-cran-praise (1.0.0-4) ...
Setting up r-cran-digest (0.6.33-1) ...
Setting up r-cran-evaluate (0.22-1) ...
Setting up r-cran-fansi (1.0.4-1) ...
Setting up r-cran-mass (7.3-60-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-cli (3.6.1-1) ...
Setting up r-cran-lifecycle (1.0.3+dfsg-1) ...
Setting up r-cran-rprojroot (2.0.3-1) ...
Setting up r-cran-jsonlite (1.8.7+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.3-1) ...
Setting up r-cran-matrix (1.6-1-1) ...
Setting up r-cran-mgcv (1.9-0-1) ...
Setting up dh-r (20230912) ...
Setting up r-cran-vctrs (0.6.4-1) ...
Setting up r-cran-rcppeigen (0.3.3.9.3-1) ...
Setting up r-cran-pillar (1.9.0+dfsg-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-minqa (1.2.6-1) ...
Setting up r-cran-callr (3.7.3-2) ...
Setting up r-cran-desc (1.4.2-1) ...
Setting up r-cran-tibble (3.2.1+dfsg-2) ...
Setting up r-cran-tmb (1.9.6-1) ...
Setting up r-cran-pkgload (1.3.2.1-1) ...
Setting up r-cran-rematch2 (2.1.2-2) ...
Setting up r-cran-waldo (0.5.1-1) ...
Setting up r-cran-testthat (3.2.0-1) ...
Setting up r-cran-nloptr (2.0.3-1) ...
Setting up r-cran-lme4 (1.1-34-1) ...
Setting up sbuild-build-depends-r-cran-glmmtmb-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.37-12+rpi2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-187-generic armhf (armv8l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.0+rpi1 g++-12_12.3.0-10+rpi1 gcc-12_12.3.0-10+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++6_13.2.0-4+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.2-4 bsdutils_1:2.39.2-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.3.0-10+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.7 debianutils_5.14 dh-autoreconf_20 dh-r_20230912 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.22.0+rpi1 dpkg-dev_1.22.0+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:12.2.0-3+rpi1 g++-12_12.3.0-10+rpi1 gcc_4:12.2.0-3+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 gcc-13-base_13.2.0-4+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-13 gettext-base_0.21-13 gfortran_4:12.2.0-3+rpi1 gfortran-12_12.3.0-10+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-3 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-4 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-4 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.6 libarchive-zip-perl_1.68-1 libasan8_13.2.0-4+rpi1 libassuan0_2.5.6-1 libatomic1_13.2.0-4+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.41-6+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.2-4 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.37-12+rpi2 libc-dev-bin_2.37-12+rpi2 libc6_2.37-12+rpi2 libc6-dev_2.37-12+rpi2 libcairo2_1.18.0-1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcap2-bin_1:2.66-4 libcc1-0_13.2.0-4+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.41-6+rpi1 libctf0_2.41-6+rpi1 libcurl3-gnutls_8.4.0-2 libcurl4_8.4.0-2 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.271 libdebhelper-perl_13.11.7 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.22.0+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.2-6 libfreetype6_2.13.2+dfsg-1 libfribidi0_1.0.13-3 libgcc-12-dev_12.3.0-10+rpi1 libgcc-s1_13.2.0-4+rpi1 libgcrypt20_1.10.2-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-12-dev_12.3.0-10+rpi1 libgfortran5_13.2.0-4+rpi1 libglib2.0-0_2.78.0-2+rpi1 libgmp10_2:6.3.0+dfsg-2 libgnutls30_3.8.1-4 libgomp1_13.2.0-4+rpi1 libgpg-error0_1.47-2 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-4 libharfbuzz0b_8.0.1-1 libhogweed6_3.9.1-2 libhttp-date-perl_6.05-2 libhttp-message-perl_6.44-2 libice6_2:1.0.10-1 libicu-dev_72.1-4 libicu72_72.1-4 libidn2-0_2.3.4-1 libio-html-perl_1.004-3 libisl23_0.26-3 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg-dev_1:2.1.5-2 libjpeg62-turbo_1:2.1.5-2 libjpeg62-turbo-dev_1:2.1.5-2 libk5crypto3_1.20.1-4 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-4 libkrb5support0_1.20.1-4 libksba8_1.6.4-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 libldap-2.5-0_2.5.13+dfsg-5+rpi1 liblerc4_4.0.0+ds-3 liblwp-mediatypes-perl_6.04-2 liblz4-1_1.9.4-1+rpi1+b1 liblzma-dev_5.4.4-0.1 liblzma5_5.4.4-0.1 libmagic-mgc_1:5.45-2 libmagic1_1:5.45-2 libmd0_1.1.0-1 libmodule-implementation-perl_0.09-2 libmodule-runtime-conflicts-perl_0.003-2 libmodule-runtime-perl_0.016-2 libmoose-perl_2.2206-1 libmount1_2.39.2-4 libmpc3_1.3.1-1 libmpfr6_4.2.1-1 libmro-compat-perl_0.15-2 libnamespace-clean-perl_0.27-2 libncurses-dev_6.4+20231016-1 libncurses6_6.4+20231016-1 libncursesw6_6.4+20231016-1 libnettle8_3.9.1-2 libnghttp2-14_1.57.0-1 libnlopt0_2.7.1-5 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.25.0-5 libpackage-deprecationmanager-perl_0.18-1 libpackage-stash-perl_0.40-1 libpackage-stash-xs-perl_0.30-1+b1 libpam-cap_1:2.66-4 libpam-modules_1.5.2-7 libpam-modules-bin_1.5.2-7 libpam-runtime_1.5.2-7 libpam0g_1.5.2-7 libpango-1.0-0_1.51.0+ds-2 libpangocairo-1.0-0_1.51.0+ds-2 libpangoft2-1.0-0_1.51.0+ds-2 libpaper-utils_1.1.29 libpaper1_1.1.29 libparams-classify-perl_0.015-2+b1 libparams-util-perl_1.102-2+b1 libpcre2-16-0_10.42-4 libpcre2-32-0_10.42-4 libpcre2-8-0_10.42-4 libpcre2-dev_10.42-4 libpcre2-posix3_10.42-4 libpcre3_2:8.39-15 libperl5.36_5.36.0-9 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-1 libpng-dev_1.6.40-2 libpng16-16_1.6.40-2 libpsl5_0.21.2-1+b1 libreadline-dev_8.2-1.3 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol1_3.1-1 libsepol2_3.5-1 libsframe1_2.41-6+rpi1 libsharpyuv0_1.3.2-0.3 libsm6_2:1.2.3-1 libsmartcols1_2.39.2-4 libsqlite3-0_3.43.2-1 libss2_1.47.0-2 libssh2-1_1.11.0-2 libssl1.1_1.1.1o-1 libssl3_3.0.11-1 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++6_13.2.0-4+rpi1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd0_254.5-1+rpi1 libtasn1-6_4.19.0-3 libtcl8.6_8.6.13+dfsg-2 libtext-glob-perl_0.11-3 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff6_4.5.1+git230720-1 libtimedate-perl_2.3300-2 libtinfo6_6.4+20231016-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-2 libtool_2.4.7-7 libtry-tiny-perl_0.31-2 libubsan1_13.2.0-4+rpi1 libuchardet0_0.0.7-1 libudev1_254.5-1+rpi1 libunistring2_1.0-2 libunistring5_1.1-2 liburi-perl_5.21-1 libuuid1_2.39.2-4 libuv1_1.44.2-1+rpi1 libvariable-magic-perl_0.63-1+b1 libwebp7_1.3.2-0.3 libwww-curl-perl_4.17-10 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.7-1 libx11-data_2:1.8.7-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.3 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1.1 libxxhash0_0.8.2-2 libzstd1_1.5.5+dfsg2-1 linux-libc-dev_6.5.6-1+rpi1 littler_0.3.18-2 login_1:4.13+dfsg1-3 logsave_1.47.0-2 lsb-base_11.6+rpi1 m4_1.4.19-4 make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 mount_2.39.2-4 nano_7.2-1 ncurses-base_6.4+20231016-1 ncurses-bin_6.4+20231016-1 netbase_6.4 openssl_3.0.11-1 passwd_1:4.13+dfsg1-3 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 r-base-core_4.3.1-4 r-base-dev_4.3.1-4 r-cran-boot_1.3-28.1-1 r-cran-brio_1.1.3-1 r-cran-callr_3.7.3-2 r-cran-cli_3.6.1-1 r-cran-crayon_1.5.2-1 r-cran-desc_1.4.2-1 r-cran-diffobj_0.3.5-1 r-cran-digest_0.6.33-1 r-cran-ellipsis_0.3.2-2 r-cran-evaluate_0.22-1 r-cran-fansi_1.0.4-1 r-cran-fs_1.6.3+dfsg-1 r-cran-glue_1.6.2-1 r-cran-jsonlite_1.8.7+dfsg-1 r-cran-lattice_0.21-9-1 r-cran-lifecycle_1.0.3+dfsg-1 r-cran-littler_0.3.18-2 r-cran-lme4_1.1-34-1 r-cran-magrittr_2.0.3-1 r-cran-mass_7.3-60-2 r-cran-matrix_1.6-1-1 r-cran-mgcv_1.9-0-1 r-cran-minqa_1.2.6-1 r-cran-nlme_3.1.163-1 r-cran-nloptr_2.0.3-1 r-cran-numderiv_2016.8-1.1-3 r-cran-pillar_1.9.0+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.3-1 r-cran-pkgload_1.3.2.1-1 r-cran-praise_1.0.0-4 r-cran-processx_3.8.2-1 r-cran-ps_1.7.5-1 r-cran-r6_2.5.1-1 r-cran-rcpp_1.0.11-1 r-cran-rcppeigen_0.3.3.9.3-1 r-cran-rematch2_2.1.2-2 r-cran-rlang_1.1.1-1 r-cran-rprojroot_2.0.3-1 r-cran-statmod_1.5.0-1 r-cran-testthat_3.2.0-1 r-cran-tibble_3.2.1+dfsg-2 r-cran-tmb_1.9.6-1 r-cran-utf8_1.2.3-1 r-cran-vctrs_0.6.4-1 r-cran-waldo_0.5.1-1 r-cran-withr_2.5.0-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-glmmtmb-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sgml-base_1.31 sysvinit-utils_3.08-3 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 unzip_6.0-28 usrmerge_37 util-linux_2.39.2-4 util-linux-extra_2.39.2-4 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.4-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: Signature made Mon Oct 23 06:53:24 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-cran-glmmtmb_1.1.8+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-cran-glmmtmb in /<<BUILDDIR>>/r-cran-glmmtmb-1.1.8+dfsg
dpkg-source: info: unpacking r-cran-glmmtmb_1.1.8+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-cran-glmmtmb_1.1.8+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying fix-autopkgtest.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-d9a33bd5-d1cb-4754-88a0-7b63829011e6
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-glmmtmb
dpkg-buildpackage: info: source version 1.1.8+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-glmmtmb/ -a -O--buildsystem=R
I: R packages needed for DEP8: glmmtmb
I: R Package: glmmTMB Version: 1.1.8
I: Building using R version 4.3.1-4
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 23 Oct 2023 08:46:43 +0200
mkdir -p /<<BUILDDIR>>/r-cran-glmmtmb-1.1.8\+dfsg/debian/r-cran-glmmtmb/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-cran-glmmtmb-1.1.8\+dfsg/debian/r-cran-glmmtmb/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 23 Oct 2023 08:46:43 +0200'"
* installing *source* package 'glmmTMB' ...
files 'inst/doc/covstruct.html', 'inst/doc/hacking.html', 'inst/doc/mcmc.html', 'inst/doc/miscEx.html', 'inst/doc/parallel.html', 'inst/doc/sim.html', 'inst/doc/troubleshooting.html' are missing
file 'DESCRIPTION' has the wrong MD5 checksum
** using staged installation
** libs
using C++ compiler: 'g++ (Raspbian 12.3.0-10+rpi1) 12.3.0'
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-glmmtmb-1.1.8+dfsg/src'
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/usr/lib/R/site-library/TMB/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c glmmTMB.cpp -o glmmTMB.o
In file included from /usr/include/c++/12/vector:70,
from /usr/include/c++/12/functional:62,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:281,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:83,
from glmmTMB.cpp:1:
/usr/include/c++/12/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:745:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
745 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc:745:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc:745:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In function 'void std::vector<_Tp, _Alloc>::_M_range_insert(iterator, _ForwardIterator, _ForwardIterator, std::forward_iterator_tag) [with _ForwardIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]':
/usr/include/c++/12/bits/vector.tcc:745:7: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc:745:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc:745:7: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator<double>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In file included from /usr/include/c++/12/vector:64:
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'TMBad::global::ad_plain TMBad::global::add_to_stack(TMBad::Scalar) [with OperatorBase = InvOp]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2452:27,
inlined from 'void TMBad::global::ad_plain::Independent()' at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:2051:42:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'TMBad::global TMBad::global::extract_sub(std::vector<unsigned int>&, TMBad::global)' at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:1287:32:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'TMBad::global::ad_plain TMBad::global::add_to_stack(TMBad::Scalar) [with OperatorBase = ConstOp]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2452:27,
inlined from 'TMBad::global::ad_plain::ad_plain(TMBad::Scalar)' at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:1960:44:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from /usr/lib/R/site-library/TMB/include/atomic_math.hpp:158,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:191:
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In function 'void atomic::pnorm1Op<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
139 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: in definition of macro 'TMB_ATOMIC_STATIC_FUNCTION'
139 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
In file included from /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:5,
from /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:4,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:114:
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::pnorm1Op<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::pnorm1Op<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::pnorm1Op<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from 'void TMBad::global::AddForwardReverse<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::Rep<atomic::pnorm1Op<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1683:33,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::pnorm1Op<> >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::pnorm1Op<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::pnorm1Op<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::pnorm1Op<> >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {TMBad::global::ad_aug}; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {TMBad::global::ad_aug}; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'std::vector<TMBad::global::ad_aug> TMBad::concat(const std::vector<global::ad_segment>&)' at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.cpp:4669:20:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'std::vector<double, std::allocator<double> > TMBad::ADFun<ad>::Jacobian(const std::vector<double, std::allocator<double> >&, std::vector<bool>, std::vector<bool>) [with ad = TMBad::global::ad_aug]' at /usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:532:22:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Eigen::Triplet<TMBad::global::ad_aug, int>}; _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<TMBad::global::ad_aug, int>, std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> > >::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > >::iterator' changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]':
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = TMBad::global::ad_aug; dummy = void]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:540:15:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = TMBad::global::ad_aug; dummy = void]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:541:15:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<TMBad::global::ad_aug, int>}; _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = TMBad::global::ad_aug]' at /usr/lib/R/site-library/TMB/include/tmbutils/spmat.hpp:21:26:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<TMBad::global::ad_aug, int>*, std::vector<Eigen::Triplet<TMBad::global::ad_aug, int>, std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> > > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<TMBad::global::ad_aug, int>}; _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Eigen::Triplet<TMBad::global::ad_aug, int>; _Alloc = std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'Eigen::SparseMatrix<typename V::value_type> newton::jacobian_sparse_t<Factorization>::as_matrix(const V&) [with V = std::vector<TMBad::global::ad_aug>; Factorization = Eigen::SimplicialLLT<Eigen::SparseMatrix<double> >]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:298:28:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<TMBad::global::ad_aug, int>*, std::vector<Eigen::Triplet<TMBad::global::ad_aug, int>, std::allocator<Eigen::Triplet<TMBad::global::ad_aug, int> > > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h: In member function 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]':
/usr/include/c++/12/bits/stl_vector.h:1477:9: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::const_iterator' changed in GCC 7.1
1477 | insert(const_iterator __position, _InputIterator __first,
| ^~~~~~
/usr/include/c++/12/bits/stl_vector.h:1477:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
/usr/include/c++/12/bits/stl_vector.h:1477:9: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
/usr/include/c++/12/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const TMBad::global::ad_aug&}; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]':
/usr/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
439 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
In member function 'void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<T> TMBad::subset(const std::vector<T>&, const std::vector<bool>&) [with T = global::ad_aug]' at /usr/lib/R/site-library/TMB/include/TMBad/graph_transform.hpp:44:28:
/usr/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
1287 | _M_realloc_insert(end(), __x);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp: In constructor 'TMBad::ADFun<ad>::ADFun(Functor, const ScalarVector&) [with Functor = TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >; ScalarVector = newton::vector<TMBad::global::ad_aug>; ad = TMBad::global::ad_aug]':
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:122:3: note: parameter passing for argument of type 'TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
122 | ADFun(Functor F, const ScalarVector &x_) : force_update_flag(false) {
| ^~~~~
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'newton::vector<TMBad::global::ad_aug> newton::NewtonOperator<Functor, Hessian_Type>::add_to_tape() [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:841:15:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'newton::vector<TMBad::global::ad_aug> newton::NewtonOperator<Functor, Hessian_Type>::add_to_tape() [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:841:15:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'newton::vector<TMBad::global::ad_aug> newton::NewtonOperator<Functor, Hessian_Type>::add_to_tape() [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:841:15:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In file included from /usr/lib/R/site-library/TMB/include/TMB.hpp:201:
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp: In constructor 'newton::NewtonOperator<Functor, Hessian_Type>::NewtonOperator(Functor&, newton::vector<TMBad::global::ad_aug>, newton::newton_config) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]':
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:783:23: note: parameter passing for argument of type 'newton::NewtonOperator<newton::slice<>, newton::jacobian_dense_t<> >::FunctorExtend' {aka 'TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >'} changed in GCC 7.1
783 | function = TMBad::ADFun<> ( FunctorExtend(F), start);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp: In member function 'TMBad::Decomp3<ADFun> TMBad::Decomp2<ADFun>::HesFun(std::vector<bool>, bool, bool, bool) [with ADFun = TMBad::ADFun<>]':
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1315:14: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::const_iterator' changed in GCC 7.1
1315 | xs.insert(xs.end(), s.begin(), s.end());
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1315:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1317:15: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::const_iterator' changed in GCC 7.1
1317 | xs0.insert(xs0.end(), s0.begin(), s0.end());
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1317:15: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1328:14: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::const_iterator' changed in GCC 7.1
1328 | xw.insert(xw.end(), z0.begin(), z0.end());
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1328:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1362:14: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::const_iterator' changed in GCC 7.1
1362 | xs.insert(xs.end(), s.begin(), s.end());
| ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/TMBad.hpp:1362:14: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In member function 'std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]',
inlined from 'void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]' at /usr/include/c++/12/bits/stl_vector.h:1294:21,
inlined from 'Eigen::SparseMatrix<typename V::value_type> newton::jacobian_sparse_t<Factorization>::as_matrix(const V&) [with V = std::vector<double, std::allocator<double> >; Factorization = Eigen::SimplicialLLT<Eigen::SparseMatrix<double> >]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:298:28:
/usr/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >' changed in GCC 7.1
123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp: In constructor 'newton::NewtonOperator<Functor, Hessian_Type>::NewtonOperator(Functor&, newton::vector<TMBad::global::ad_aug>, newton::newton_config) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]':
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:783:23: note: parameter passing for argument of type 'newton::NewtonOperator<newton::slice<>, newton::jacobian_sparse_t<> >::FunctorExtend' {aka 'TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >'} changed in GCC 7.1
783 | function = TMBad::ADFun<> ( FunctorExtend(F), start);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp: In constructor 'newton::NewtonOperator<Functor, Hessian_Type>::NewtonOperator(Functor&, newton::vector<TMBad::global::ad_aug>, newton::newton_config) [with Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]':
/usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:783:23: note: parameter passing for argument of type 'newton::NewtonOperator<newton::slice<>, newton::jacobian_sparse_plus_lowrank_t<> >::FunctorExtend' {aka 'TMBad::StdWrap<newton::slice<>, newton::vector<TMBad::global::ad_aug> >'} changed in GCC 7.1
783 | function = TMBad::ADFun<> ( FunctorExtend(F), start);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function 'void atomic::matmulOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type 'TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:435:1: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
435 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function 'void atomic::matmulOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:435:1: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
435 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matmulOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matmulOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function 'void atomic::invpdOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type 'TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:528:1: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
528 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function 'void atomic::logdetOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type 'TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:503:1: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
503 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
distrib.h: In member function 'void glmmtmb::logit_invcloglogOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type 'TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
distrib.h:196:3: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
196 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
distrib.h: In member function 'void glmmtmb::logit_invcloglogOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
distrib.h:196:3: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
196 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_invcloglogOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_invcloglogOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
distrib.h: In member function 'void glmmtmb::logit_pnormOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type 'TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
distrib.h:227:3: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
227 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
distrib.h: In member function 'void glmmtmb::logit_pnormOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
distrib.h:227:3: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
227 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<glmmtmb::logit_pnormOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = glmmtmb::logit_pnormOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In function 'void atomic::bessel_k_10Op<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
139 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: in definition of macro 'TMB_ATOMIC_STATIC_FUNCTION'
139 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::bessel_k_10Op<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::bessel_k_10Op<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::bessel_k_10Op<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from 'void TMBad::global::AddForwardReverse<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::Rep<atomic::bessel_k_10Op<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1683:33,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::bessel_k_10Op<> >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::bessel_k_10Op<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::bessel_k_10Op<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::bessel_k_10Op<> >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = TMBad::global::ad_aug; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = double; dummy = void]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:540:15:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'std::vector<T> newton::jacobian_sparse_plus_lowrank_t<dummy>::eval(const std::vector<T>&) [with T = double; dummy = void]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:541:15:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In function 'void atomic::D_lgammaOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
139 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:139:29: note: in definition of macro 'TMB_ATOMIC_STATIC_FUNCTION'
139 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::D_lgammaOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::D_lgammaOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::D_lgammaOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from 'void TMBad::global::AddForwardReverse<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::Rep<atomic::D_lgammaOp<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1683:33,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::D_lgammaOp<> >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<TMBad::global::AddInputSizeOutputSize<atomic::D_lgammaOp<> > > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Rep<Operator1>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; Operator1 = atomic::D_lgammaOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1902:61,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = TMBad::global::Rep<atomic::D_lgammaOp<> >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = TMBad::global::ad_aug; Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function 'void atomic::logdetOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:503:1: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
503 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::logdetOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::logdetOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = TMBad::global::ad_aug; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function 'void atomic::invpdOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:528:1: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
528 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::invpdOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::invpdOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::retaping_derivative_table<TMBad::logIntegrate_t<>, TMBad::ADFun<>, TMBad::ParametersChanged, false>]' at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:218:14:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::retaping_derivative_table<TMBad::logIntegrate_t<>, TMBad::ADFun<>, TMBad::ParametersChanged, false>]' at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:219:14:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::standard_derivative_table<TMBad::ADFun<>, false>]' at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:218:14:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >; <template-parameter-2-2> = void; _Tp = TMBad::global::ad_aug; _Alloc = std::allocator<TMBad::global::ad_aug>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'void TMBad::AtomOp<DerivativeTable>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with DerivativeTable = TMBad::standard_derivative_table<TMBad::ADFun<>, false>]' at /usr/lib/R/site-library/TMB/include/TMBad/checkpoint.hpp:219:14:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<TMBad::global::ad_aug>::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<TMBad::global::ad_aug*, std::vector<TMBad::global::ad_aug> >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = double; Functor = newton::slice<>; Hessian_Type = newton::jacobian_dense_t<>]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = double; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_plus_lowrank_t<>]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
In member function 'void std::vector<_Tp, _Alloc>::_M_insert_dispatch(iterator, _InputIterator, _InputIterator, std::__false_type) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; _Tp = double; _Alloc = std::allocator<double>]',
inlined from 'std::vector<_Tp, _Alloc>::iterator std::vector<_Tp, _Alloc>::insert(const_iterator, _InputIterator, _InputIterator) [with _InputIterator = __gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >; <template-parameter-2-2> = void; _Tp = double; _Alloc = std::allocator<double>]' at /usr/include/c++/12/bits/stl_vector.h:1481:22,
inlined from 'void newton::NewtonOperator<Functor, Hessian_Type>::reverse(TMBad::ReverseArgs<Type>&) [with T = double; Functor = newton::slice<>; Hessian_Type = newton::jacobian_sparse_t<>]' at /usr/lib/R/site-library/TMB/include/tmbutils/newton.hpp:1025:45:
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type 'std::vector<double, std::allocator<double> >::iterator' changed in GCC 7.1
1779 | _M_range_insert(__pos, __first, __last,
| ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
1780 | std::__iterator_category(__first));
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/12/bits/stl_vector.h:1779:26: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<double*, std::vector<double, std::allocator<double> > >' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function 'void atomic::matinvOp<dummy>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>) [with dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: parameter passing for argument of type 'TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:31:8: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
31 | void forward(TMBad::ForwardArgs<TMBad::Replay> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:473:1: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
473 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::forward_incr(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1697:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::forward_incr(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2150:24:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::forward(TMBad::ForwardArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::forward(TMBad::ForwardArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2142:19:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1717 | OperatorBase::forward(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1717:28: note: parameter passing for argument of type 'const TMBad::ForwardArgs<TMBad::global::ad_aug>' changed in GCC 7.1
/usr/lib/R/site-library/TMB/include/atomic_math.hpp: In member function 'void atomic::matinvOp<dummy>::reverse(TMBad::ReverseArgs<Type>) [with Type = TMBad::global::ad_aug; dummy = void]':
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: parameter passing for argument of type 'TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/tmbad_atomic_macro.hpp:37:29: note: in definition of macro 'TMB_ATOMIC_VECTOR_FUNCTION_DEFINE'
37 | template<class Type> void reverse(TMBad::ReverseArgs<Type> _args_) { \
| ^~~~~~~
/usr/lib/R/site-library/TMB/include/atomic_math.hpp:473:1: note: in expansion of macro 'TMB_ATOMIC_VECTOR_FUNCTION'
473 | TMB_ATOMIC_VECTOR_FUNCTION(
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]',
inlined from 'void TMBad::global::AddForwardIncrReverseDecr<OperatorBase>::reverse_decr(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddForwardMarkReverseMark<TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > > >]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1704:28,
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse_decr(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2152:67:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
In member function 'void TMBad::global::AddForwardMarkReverseMark<OperatorBase>::reverse(TMBad::ReverseArgs<Type>&) [with Type = TMBad::global::ad_aug; OperatorBase = TMBad::global::AddIncrementDecrement<TMBad::global::AddDependencies<atomic::matinvOp<> > >]',
inlined from 'void TMBad::global::Complete<OperatorBase>::reverse(TMBad::ReverseArgs<TMBad::global::ad_aug>&) [with OperatorBase = atomic::matinvOp<>]' at /usr/lib/R/site-library/TMB/include/TMBad/global.hpp:2144:57:
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
1721 | OperatorBase::reverse(args);
| ~~~~~~~~~~~~~~~~~~~~~^~~~~~
/usr/lib/R/site-library/TMB/include/TMBad/global.hpp:1721:28: note: parameter passing for argument of type 'const TMBad::ReverseArgs<TMBad::global::ad_aug>' changed in GCC 7.1
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -DTMBAD_FRAMEWORK -I'/usr/lib/R/site-library/TMB/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2 -c utils.cpp -o utils.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o glmmTMB.so glmmTMB.o utils.o -fopenmp -L/usr/lib/R/lib -lR
"/usr/lib/R/bin/Rscript" -e "cat(as.character(packageVersion('TMB')), '\n', sep="", file='../inst/TMB-version')"
"/usr/lib/R/bin/Rscript" -e "cat(as.character(packageVersion('Matrix')), '\n', sep="", file='../inst/Matrix-version')"
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-glmmtmb-1.1.8+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-cran-glmmtmb-1.1.8+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-cran-glmmtmb-1.1.8+dfsg/src'
installing to /<<BUILDDIR>>/r-cran-glmmtmb-1.1.8+dfsg/debian/r-cran-glmmtmb/usr/lib/R/site-library/00LOCK-r-cran-glmmtmb-1.1.8+dfsg/00new/glmmTMB/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Warning in checkMatrixPackageVersion() :
Package version inconsistency detected.
TMB was built with Matrix version 1.5.3
Current Matrix version is 1.6.1
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
Warning in checkMatrixPackageVersion() :
Package version inconsistency detected.
TMB was built with Matrix version 1.5.3
Current Matrix version is 1.6.1
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
Warning in checkMatrixPackageVersion() :
Package version inconsistency detected.
TMB was built with Matrix version 1.5.3
Current Matrix version is 1.6.1
Please re-install 'TMB' from source using install.packages('TMB', type = 'source') or ask CRAN for a binary version of 'TMB' matching CRAN's 'Matrix' package
** testing if installed package keeps a record of temporary installation path
* DONE (glmmTMB)
W: Ignoring specified R dependency: R (>= 3.2.0)
I: Using r-cran-glmmtmb for Recommends:glmmtmb
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-lattice for Suggests:lattice
I: Using r-cran-ggplot2 for Suggests:ggplot2 (>= 2.2.1)
I: Using r-cran-mlmrev for Suggests:mlmRev
I: Using r-cran-bbmle for Suggests:bbmle (>= 1.0.19)
I: Using r-cran-pscl for Suggests:pscl
I: Using r-cran-coda for Suggests:coda
I: Using r-cran-reshape2 for Suggests:reshape2
I: Using r-cran-car for Suggests:car (>= 3.0.6)
I: Using r-cran-emmeans for Suggests:emmeans (>= 1.4)
I: Using r-cran-estimability for Suggests:estimability
W: Cannot find a debian package for Suggests:DHARMa
I: Using r-cran-multcomp for Suggests:multcomp
W: Cannot find a debian package for Suggests:MuMIn
I: Using r-cran-effects for Suggests:effects (>= 4.0-1)
W: Cannot find a debian package for Suggests:dotwhisker
I: Using r-cran-broom for Suggests:broom
I: Using r-cran-broom.mixed for Suggests:broom.mixed
I: Using r-cran-plyr for Suggests:plyr
I: Using r-cran-png for Suggests:png
I: Using r-cran-boot for Suggests:boot
W: Cannot find a debian package for Suggests:texreg
I: Using r-cran-xtable for Suggests:xtable
W: Cannot find a debian package for Suggests:huxtable
W: Cannot find a debian package for Suggests:mvabund
I: Using r-cran-lme4 for Imports:lme4 (>= 1.1-18.9000)
I: Using r-cran-matrix for Imports:Matrix
I: Using r-cran-nlme for Imports:nlme
I: Using r-cran-numderiv for Imports:numDeriv
I: Using r-cran-mgcv for Imports:mgcv
I: Using r-cran-tmb for LinkingTo:TMB
I: Using r-cran-rcppeigen for LinkingTo:RcppEigen
I: Use r-cran-glmmtmb as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-glmmtmb-dbgsym' in '../r-cran-glmmtmb-dbgsym_1.1.8+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-cran-glmmtmb' in '../r-cran-glmmtmb_1.1.8+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-cran-glmmtmb_1.1.8+dfsg-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> -O../r-cran-glmmtmb_1.1.8+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-10-25T06:36:04Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-glmmtmb_1.1.8+dfsg-1_armhf.changes:
------------------------------------------
Format: 1.8
Date: Mon, 23 Oct 2023 08:46:43 +0200
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb r-cran-glmmtmb-dbgsym
Architecture: armhf
Version: 1.1.8+dfsg-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-glmmtmb - Generalized Linear Mixed Models using Template Model Builder
Changes:
r-cran-glmmtmb (1.1.8+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Add comment to debian/tests/control that dh-update-R is messing up its
content
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Files:
68548179eb36aa98f0d4368b71185a88 3022232 debug optional r-cran-glmmtmb-dbgsym_1.1.8+dfsg-1_armhf.deb
6660a25344e701bcaf7bf1cc5eb2e8c4 11195 gnu-r optional r-cran-glmmtmb_1.1.8+dfsg-1_armhf.buildinfo
023395dad066f95c45966a0327d973d9 4735904 gnu-r optional r-cran-glmmtmb_1.1.8+dfsg-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-glmmtmb-dbgsym_1.1.8+dfsg-1_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 3022232 bytes: control archive=544 bytes.
403 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-glmmtmb-dbgsym
Source: r-cran-glmmtmb
Version: 1.1.8+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 4368
Depends: r-cran-glmmtmb (= 1.1.8+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-glmmtmb
Build-Ids: f1f9b9dfa75b54b495eb248b6e8d5ed0f1b8ef2e
drwxr-xr-x root/root 0 2023-10-23 06:46 ./
drwxr-xr-x root/root 0 2023-10-23 06:46 ./usr/
drwxr-xr-x root/root 0 2023-10-23 06:46 ./usr/lib/
drwxr-xr-x root/root 0 2023-10-23 06:46 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-10-23 06:46 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root 0 2023-10-23 06:46 ./usr/share/
drwxr-xr-x root/root 0 2023-10-23 06:46 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-10-23 06:46 ./usr/share/doc/r-cran-glmmtmb-dbgsym -> r-cran-glmmtmb
r-cran-glmmtmb_1.1.8+dfsg-1_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 4735904 bytes: control archive=4248 bytes.
1329 bytes, 17 lines control
10478 bytes, 120 lines md5sums
Package: r-cran-glmmtmb
Version: 1.1.8+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 8015
Depends: r-api-4.0, r-cran-lme4 (>= 1.1-18.9000), r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-mgcv, r-cran-tmb, r-cran-rcppeigen, libc6 (>= 2.34), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libstdc++6 (>= 11)
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat, r-cran-mass, r-cran-lattice, r-cran-ggplot2 (>= 2.2.1), r-cran-mlmrev, r-cran-bbmle (>= 1.0.19), r-cran-pscl, r-cran-coda, r-cran-reshape2, r-cran-car (>= 3.0.6), r-cran-emmeans (>= 1.4), r-cran-estimability, r-cran-multcomp, r-cran-effects (>= 4.0-1), r-cran-broom, r-cran-broom.mixed, r-cran-plyr, r-cran-png, r-cran-boot, r-cran-xtable
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=glmmTMB
Description: Generalized Linear Mixed Models using Template Model Builder
Fit linear and generalized linear mixed models with various
extensions, including zero-inflation. The models are fitted using maximum
likelihood estimation via 'TMB' (Template Model Builder). Random effects are
assumed to be Gaussian on the scale of the linear predictor and are integrated
out using the Laplace approximation. Gradients are calculated using automatic
differentiation.
drwxr-xr-x root/root 0 2023-10-23 06:46 ./
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-rw-r--r-- root/root 7 2023-10-23 06:46 ./usr/lib/R/site-library/glmmTMB/Matrix-version
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+------------------------------------------------------------------------------+
| Post Build |
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| Cleanup |
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Purging /<<BUILDDIR>>
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 25892
Build-Time: 396
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 562
Job: r-cran-glmmtmb_1.1.8+dfsg-1
Machine Architecture: armhf
Package: r-cran-glmmtmb
Package-Time: 977
Source-Version: 1.1.8+dfsg-1
Space: 25892
Status: successful
Version: 1.1.8+dfsg-1
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Finished at 2023-10-25T06:36:04Z
Build needed 00:16:17, 25892k disk space