r-cran-glmmtmb →
1.1.2.3-2 →
armhf → 2022-01-01 05:26:34
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-cran-glmmtmb 1.1.2.3-2 (armhf) Sat, 01 Jan 2022 05:08:12 +0000 |
+==============================================================================+
Package: r-cran-glmmtmb
Version: 1.1.2.3-2
Source Version: 1.1.2.3-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-620e8be0-9791-4d7f-8277-1ddf82925145' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [12.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.6 MB]
Fetched 26.2 MB in 11s (2354 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-glmmtmb' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 3926 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-cran-glmmtmb 1.1.2.3-2 (dsc) [2198 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-cran-glmmtmb 1.1.2.3-2 (tar) [3911 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-cran-glmmtmb 1.1.2.3-2 (diff) [13.7 kB]
Fetched 3926 kB in 1s (4631 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-D3n6Xu/r-cran-glmmtmb-1.1.2.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-D3n6Xu' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-o0WBlS/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-o0WBlS/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-o0WBlS/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (10.2 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 47 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (67.7 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12559 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-tmb, r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-rcppeigen
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-tmb, r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-rcppeigen
dpkg-deb: building package 'sbuild-build-depends-r-cran-glmmtmb-dummy' in '/<<BUILDDIR>>/resolver-o0WBlS/apt_archive/sbuild-build-depends-r-cran-glmmtmb-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-glmmtmb-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ Sources [548 B]
Get:5 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ Packages [626 B]
Fetched 2507 B in 0s (11.8 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-glmmtmb build dependencies (apt-based resolver)
--------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils bzip2
ca-certificates cpp-11 dctrl-tools debhelper dh-autoreconf dh-r
dh-strip-nondeterminism dwz file fontconfig fontconfig-config
fonts-dejavu-core g++-11 gcc-11 gcc-11-base gettext gettext-base gfortran
gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libasan6 libatomic1 libb-hooks-endofscope-perl
libb-hooks-op-check-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-1.0
libbz2-dev libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-11-dev
libgcc-s1 libgfortran-11-dev libgfortran5 libglib2.0-0 libgomp1
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libnlopt0 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2 libsm6
libssh2-1 libstdc++-11-dev libstdc++6 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libubsan1 libuchardet0 liburi-perl libvariable-magic-perl libwebp6
libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev r-cran-boot r-cran-lattice r-cran-littler
r-cran-lme4 r-cran-mass r-cran-matrix r-cran-minqa r-cran-nlme r-cran-nloptr
r-cran-numderiv r-cran-pkgkitten r-cran-rcpp r-cran-rcppeigen r-cran-statmod
r-cran-tmb ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc bzip2-doc gcc-11-locales debtags
dh-make postgresql-client-common gcc-11-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff
liblapack-doc icu-doc liblzma-doc ncurses-doc libscalar-number-perl
readline-doc libstdc++-11-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-cran-getopt
r-cran-inline
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev libcairo2
libclass-c3-perl libclass-load-perl libclass-load-xs-perl libcurl3-gnutls
libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-11-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu67 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 liblwp-mediatypes-perl
liblzma-dev libmagic-mgc libmagic1 libmd0 libmodule-implementation-perl
libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libnlopt0 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2 libsm6
libssh2-1 libsub-exporter-perl libsub-exporter-progressive-perl
libsub-identify-perl libsub-install-perl libsub-name-perl
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtimedate-perl libtk8.6 libtool libtry-tiny-perl libuchardet0 liburi-perl
libvariable-magic-perl libwebp6 libwww-curl-perl libwww-curl-simple-perl
libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4
man-db openssl pkg-config po-debconf r-base-core r-base-dev r-cran-boot
r-cran-lattice r-cran-littler r-cran-lme4 r-cran-mass r-cran-matrix
r-cran-minqa r-cran-nlme r-cran-nloptr r-cran-numderiv r-cran-pkgkitten
r-cran-rcpp r-cran-rcppeigen r-cran-statmod r-cran-tmb
sbuild-build-depends-r-cran-glmmtmb-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
bzip2 cpp-11 g++-11 gcc-11 gcc-11-base libasan6 libatomic1 libbz2-1.0
libcc1-0 libgcc-11-dev libgcc-s1 libgomp1 libstdc++-11-dev libstdc++6
libubsan1
15 upgraded, 185 newly installed, 0 to remove and 32 not upgraded.
Need to get 140 MB of archives.
After this operation, 47.0 MB disk space will be freed.
Get:1 copy:/<<BUILDDIR>>/resolver-o0WBlS/apt_archive ./ sbuild-build-depends-r-cran-glmmtmb-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.37.2-5 [136 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 11.2.0-13+rpi1 [37.9 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.2.0-13+rpi1 [207 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 11.2.0-13+rpi1 [36.1 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 11.2.0-13+rpi1 [88.0 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 11.2.0-13+rpi1 [8196 B]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.2.0-13+rpi1 [1947 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 11.2.0-13+rpi1 [799 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf g++-11 armhf 11.2.0-13+rpi1 [7910 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.2.0-13+rpi1 [1961 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.2.0-13+rpi1 [701 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf gcc-11 armhf 11.2.0-13+rpi1 [14.0 MB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf cpp-11 armhf 11.2.0-13+rpi1 [7071 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 11.2.0-13+rpi1 [467 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-7 [793 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.4-2 [31.5 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.9.4-2 [1307 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf bzip2 armhf 1.0.8-5 [47.2 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libbz2-1.0 armhf 1.0.8-5 [43.1 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-2 [295 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-2 [119 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-2 [65.8 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-4 [171 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.13-1 [34.3 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.1 [823 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-4 [510 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 1.1.1m-1 [815 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20210119 [158 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.5.2 [192 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.6-15 [513 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.186-1 [174 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf libicu67 armhf 67.1-7 [8291 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.12+dfsg-5 [584 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-4 [1215 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.5.2 [1056 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.0-2 [109 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.2-1 [80.1 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b1 [261 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-3 [276 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.11.0+dfsg-1 [386 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.2 [281 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.2 [328 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.3-1 [103 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.2-2 [311 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.2-2 [704 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.43.0-1 [65.3 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-2 [161 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.79.1-2 [320 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.70.2-1 [1210 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 11.2.0-13+rpi1 [235 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.0-2 [1590 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.2 [416 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2 [63.5 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1 [1422 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2 [39.7 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.48.10+ds1-1 [184 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.48.10+ds1-1 [66.6 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.48.10+ds1-1 [56.8 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.8-1 [44.1 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libwebp6 armhf 0.6.1-2.1 [225 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-2 [272 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.0-1 [159 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.1.2-1 [25.4 MB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.2.0-13+rpi1 [280 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf gfortran-11 armhf 11.2.0-13+rpi1 [7573 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:11.2.0-2+rpi1 [1428 B]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.0-2 [114 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.0-2 [2851 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3-1 [79.8 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3-1 [290 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3-1 [932 B]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1-2 [121 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.39-3 [200 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.39-3 [190 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.39-3 [51.8 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.39-3 [629 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-13 [235 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-13 [228 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-13 [150 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-13 [566 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [184 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-3 [277 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5 [26.8 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2 [219 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 67.1-7 [172 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 67.1-7 [9228 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1-1 [36.6 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.1.2-1 [4484 B]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-2 [16.1 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.10-1 [91.0 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.35-1 [80.5 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b1 [24.6 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b4 [11.0 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.6 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-1 [24.2 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libscalar-list-utils-perl armhf 1:1.59-1 [60.8 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.39-1 [21.9 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b4 [14.3 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.13-1 [12.2 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b1 [13.2 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b2 [18.5 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1 [803 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b3 [43.0 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.25-1 [19.5 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b3 [11.6 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.79.1-2 [317 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b1 [58.9 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libnlopt0 armhf 2.7.1-2 [140 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.15-1 [92.5 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf littler all 0.3.15-1 [16.9 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf r-cran-boot all 1.3-28-2 [623 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-1 [1176 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.4-0-1 [4256 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-54-2 [1117 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.153-1 [2266 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.7-2 [1997 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf r-cran-minqa armhf 1.2.4-1+b2 [100 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf r-cran-nloptr armhf 1.2.2.3-1 [292 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcppeigen armhf 0.3.3.9.1-1 [1324 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf r-cran-statmod armhf 1.4.36-1 [259 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lme4 armhf 1.1-27.1-2 [4409 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf r-cran-numderiv all 2016.8-1.1-3 [115 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tmb armhf 1.7.22-2 [839 kB]
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Setting up libstdc++6:armhf (11.2.0-13+rpi1) ...
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Setting up libexpat1:armhf (2.4.2-1) ...
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Setting up libdatrie1:armhf (0.2.13-2) ...
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Setting up libglib2.0-0:armhf (2.70.2-1) ...
No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Setting up openssl (1.1.1m-1) ...
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Setting up libxml2:armhf (2.9.12+dfsg-5) ...
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update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
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Setting up libfile-stripnondeterminism-perl (1.13.0-1) ...
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
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Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
Setting up m4 (1.4.18-5) ...
Setting up libcurl3-gnutls:armhf (7.79.1-2) ...
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Setting up libdevel-callchecker-perl (0.008-1+b2) ...
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
129 added, 0 removed; done.
Setting up libfreetype6:armhf (2.11.0+dfsg-1) ...
Setting up liblapack-dev:armhf (3.10.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.112-1) ...
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Setting up libfontconfig1:armhf (2.13.1-4.2) ...
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Setting up libsm6:armhf (2:1.2.3-1) ...
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Setting up libsub-exporter-perl (0.988-1) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
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Regenerating fonts cache... done.
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Setting up libwww-curl-perl (4.17-7+b1) ...
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Not building database; man-db/auto-update is not 'true'.
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Setting up gfortran (4:11.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
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Setting up r-base-core (4.1.2-1) ...
Creating config file /etc/R/Renviron with new version
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Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b4) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up r-cran-numderiv (2016.8-1.1-3) ...
Setting up libb-hooks-endofscope-perl (0.25-1) ...
Setting up r-cran-littler (0.3.15-1) ...
Setting up r-cran-rcpp (1.0.7-2) ...
Setting up r-cran-nloptr (1.2.2.3-1) ...
Setting up r-cran-boot (1.3-28-2) ...
Setting up r-base-dev (4.1.2-1) ...
Setting up littler (0.3.15-1) ...
Setting up libmoose-perl:armhf (2.2200-1) ...
Setting up r-cran-mass (7.3-54-2) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-cran-matrix (1.4-0-1) ...
Setting up r-cran-rcppeigen (0.3.3.9.1-1) ...
Setting up r-cran-minqa (1.2.4-1+b2) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-cran-lme4 (1.1-27.1-2) ...
Setting up r-cran-tmb (1.7.22-2) ...
Setting up dh-r (20210816) ...
Setting up sbuild-build-depends-r-cran-glmmtmb-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.32-4+rpi1) ...
Processing triggers for ca-certificates (20210119) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.15.0-163-generic armhf (armv8l)
Toolchain package versions: binutils_2.37-5+rpi1 dpkg-dev_1.20.9+rpi1 g++-11_11.2.0-13+rpi1 gcc-11_11.2.0-13+rpi1 libc6-dev_2.32-4+rpi1 libstdc++-11-dev_11.2.0-13+rpi1 libstdc++6_11.2.0-13+rpi1 linux-libc-dev_5.14.16-1+rpi1
Package versions: adduser_3.118 apt_2.3.12 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12+rpi1 base-passwd_3.5.52 bash_5.1-3.1 binutils_2.37-5+rpi1 binutils-arm-linux-gnueabihf_2.37-5+rpi1 binutils-common_2.37-5+rpi1 bsdextrautils_2.37.2-5 bsdutils_1:2.37.2-4 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20210119 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.2.0-13+rpi1 dash_0.5.11+git20210903+057cd650a4ed-3 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.5.2 debianutils_4.11.2 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-2 dpkg_1.20.9+rpi1 dpkg-dev_1.20.9+rpi1 dwz_0.14-1 e2fsprogs_1.46.4-1 fakeroot_1.25.3-1.1 file_1:5.41-2 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:11.2.0-2+rpi1 g++-11_11.2.0-13+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.2.0-13+rpi1 gcc-11-base_11.2.0-13+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-4 gettext-base_0.21-4 gfortran_4:11.2.0-2+rpi1 gfortran-11_11.2.0-13+rpi1 gnupg_2.2.27-2 gnupg-l10n_2.2.27-2 gnupg-utils_2.2.27-2 gpg_2.2.27-2 gpg-agent_2.2.27-2 gpg-wks-client_2.2.27-2 gpg-wks-server_2.2.27-2 gpgconf_2.2.27-2 gpgsm_2.2.27-2 gpgv_2.2.27-2 grep_3.7-1 groff-base_1.22.4-7 gzip_1.10-4 hostname_3.23 icu-devtools_67.1-7 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libalgorithm-c3-perl_0.11-1 libapt-pkg6.0_2.3.12 libarchive-zip-perl_1.68-1 libasan6_11.2.0-13+rpi1 libassuan0_2.5.5-1 libatomic1_11.2.0-13+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1 libb-hooks-endofscope-perl_0.25-1 libb-hooks-op-check-perl_0.22-1+b4 libbinutils_2.37-5+rpi1 libblas-dev_3.10.0-2 libblas3_3.10.0-2 libblkid1_2.37.2-4 libbrotli1_1.0.9-2+b1 libbsd0_0.11.3-1 libbz2-1.0_1.0.8-5 libbz2-dev_1.0.8-5 libc-bin_2.32-4+rpi1 libc-dev-bin_2.32-4+rpi1 libc6_2.32-4+rpi1 libc6-dev_2.32-4+rpi1 libcairo2_1.16.0-5 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libmodule-implementation-perl_0.09-1.1 libmodule-runtime-conflicts-perl_0.003-1.1 libmodule-runtime-perl_0.016-1 libmoose-perl_2.2200-1 libmount1_2.37.2-4 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libmro-compat-perl_0.13-1 libnamespace-clean-perl_0.27-1 libncurses-dev_6.3-1 libncurses5-dev_6.3-1 libncurses6_6.3-1 libncursesw6_6.3-1 libnettle8_3.7.3-1 libnghttp2-14_1.43.0-1 libnlopt0_2.7.1-2 libnpth0_1.6-3 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-5 libpackage-deprecationmanager-perl_0.17-1.1 libpackage-stash-perl_0.39-1 libpackage-stash-xs-perl_0.29-1+b2 libpam-modules_1.4.0-10 libpam-modules-bin_1.4.0-10 libpam-runtime_1.4.0-10 libpam0g_1.4.0-10 libpango-1.0-0_1.48.10+ds1-1 libpangocairo-1.0-0_1.48.10+ds1-1 libpangoft2-1.0-0_1.48.10+ds1-1 libpaper-utils_1.1.28 libpaper1_1.1.28 libparams-classify-perl_0.015-1+b3 libparams-util-perl_1.102-1+b1 libpcre16-3_2:8.39-13 libpcre2-16-0_10.39-3 libpcre2-32-0_10.39-3 libpcre2-8-0_10.39-3 libpcre2-dev_10.39-3 libpcre2-posix3_10.39-3 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libtext-charwidth-perl_0.04-10+b1 libtext-iconv-perl_1.7-7+b1 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.3.0-2 libtimedate-perl_2.3300-2 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtk8.6_8.6.12-1 libtool_2.4.6-15 libtry-tiny-perl_0.31-1 libubsan1_11.2.0-13+rpi1 libuchardet0_0.0.7-1 libudev1_249.7-1+rpi1 libunistring2_0.9.10-6 liburi-perl_5.10-1 libuuid1_2.37.2-4 libvariable-magic-perl_0.62-1+b3 libwebp6_0.6.1-2.1 libwww-curl-perl_4.17-7+b1 libwww-curl-simple-perl_0.100191-2 libx11-6_2:1.7.2-2 libx11-data_2:1.7.2-2 libxau6_1:1.0.9-1 libxcb-render0_1.14-3 libxcb-shm0_1.14-3 libxcb1_1.14-3 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.2-2 libxml2_2.9.12+dfsg-5 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.2.0-1 libxxhash0_0.8.0-2+rpi1 libzstd1_1.4.8+dfsg-3+rpi1 linux-libc-dev_5.14.16-1+rpi1 littler_0.3.15-1 login_1:4.8.1-2 logsave_1.46.4-1 lsb-base_11.1.0+rpi1 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-2 mawk_1.3.4.20200120-2 mount_2.37.2-4 ncurses-base_6.3-1 ncurses-bin_6.3-1 netbase_6.3 openssl_1.1.1m-1 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 pinentry-curses_1.1.0-4 pkg-config_0.29.2-1 po-debconf_1.0.21+nmu1 r-base-core_4.1.2-1 r-base-dev_4.1.2-1 r-cran-boot_1.3-28-2 r-cran-lattice_0.20-45-1 r-cran-littler_0.3.15-1 r-cran-lme4_1.1-27.1-2 r-cran-mass_7.3-54-2 r-cran-matrix_1.4-0-1 r-cran-minqa_1.2.4-1+b2 r-cran-nlme_3.1.153-1 r-cran-nloptr_1.2.2.3-1 r-cran-numderiv_2016.8-1.1-3 r-cran-pkgkitten_0.2.2-2 r-cran-rcpp_1.0.7-2 r-cran-rcppeigen_0.3.3.9.1-1 r-cran-statmod_1.4.36-1 r-cran-tmb_1.7.22-2 raspbian-archive-keyring_20120528.2 readline-common_8.1-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-glmmtmb-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.00-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.2-4 x11-common_1:7.7+23 xauth_1:1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2 zip_3.0-12 zlib1g_1:1.2.11.dfsg-2 zlib1g-dev_1:1.2.11.dfsg-2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.BWTzDbL3/trustedkeys.kbx': General error
gpgv: Signature made Mon Dec 27 09:32:20 2021 UTC
gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-glmmtmb_1.1.2.3-2.dsc
dpkg-source: info: extracting r-cran-glmmtmb in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-glmmtmb_1.1.2.3.orig.tar.gz
dpkg-source: info: unpacking r-cran-glmmtmb_1.1.2.3-2.debian.tar.xz
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-620e8be0-9791-4d7f-8277-1ddf82925145
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-glmmtmb
dpkg-buildpackage: info: source version 1.1.2.3-2
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-cran-glmmtmb/ -a -O--buildsystem=R
I: R packages needed for DEP8: glmmtmb
I: R Package: glmmTMB Version: 1.1.2.3
I: Building using R version 4.1.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 27 Dec 2021 09:18:07 +0000
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-glmmtmb/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-glmmtmb/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 27 Dec 2021 09:18:07 +0000'"
* installing *source* package 'glmmTMB' ...
** package 'glmmTMB' successfully unpacked and MD5 sums checked
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/TMB/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glmmTMB.cpp -o glmmTMB.o
In file included from /usr/include/c++/11/vector:72,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:15,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:59,
from glmmTMB.cpp:1:
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<double>, int>}; _Tp = Eigen::Triplet<CppAD::AD<double>, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<double>, int> >]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<double>, int>, std::allocator<Eigen::Triplet<CppAD::AD<double>, int> > >::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > >::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<double>]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<double>, int>*, std::vector<Eigen::Triplet<CppAD::AD<double>, int>, std::allocator<Eigen::Triplet<CppAD::AD<double>, int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = double]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>}; _Tp = Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> >]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> > >::iterator' changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>}; _Tp = Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> >]':
/usr/include/c++/11/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > >::iterator' changed in GCC 7.1
/usr/include/c++/11/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<CppAD::AD<double> >]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/c++/11/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]':
/usr/include/c++/11/bits/vector.tcc:121:28: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:371,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:58,
from glmmTMB.cpp:1:
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In member function 'void report_stack<Type>::push(Vector_Matrix_Or_Array, const char*) [with Vector_Matrix_Or_Array = tmbutils::vector<CppAD::AD<double> >; Type = CppAD::AD<double>]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:31: warning: iteration 536870912 invokes undefined behavior [-Waggressive-loop-optimizations]
259 | while(size) ptr[--size].~T();
| ~~~~~~~~~~~~~~^~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:11: note: within this loop
259 | while(size) ptr[--size].~T();
| ^~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In member function 'void report_stack<Type>::push(Vector_Matrix_Or_Array, const char*) [with Vector_Matrix_Or_Array = tmbutils::vector<double>; Type = double]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:31: warning: iteration 536870912 invokes undefined behavior [-Waggressive-loop-optimizations]
259 | while(size) ptr[--size].~T();
| ~~~~~~~~~~~~~~^~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:11: note: within this loop
259 | while(size) ptr[--size].~T();
| ^~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In member function 'void report_stack<Type>::push(Vector_Matrix_Or_Array, const char*) [with Vector_Matrix_Or_Array = tmbutils::vector<CppAD::AD<CppAD::AD<double> > >; Type = CppAD::AD<CppAD::AD<double> >]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:31: warning: iteration 536870912 invokes undefined behavior [-Waggressive-loop-optimizations]
259 | while(size) ptr[--size].~T();
| ~~~~~~~~~~~~~~^~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:11: note: within this loop
259 | while(size) ptr[--size].~T();
| ^~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In member function 'void report_stack<Type>::push(Vector_Matrix_Or_Array, const char*) [with Vector_Matrix_Or_Array = tmbutils::vector<CppAD::AD<CppAD::AD<CppAD::AD<double> > > >; Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:31: warning: iteration 536870912 invokes undefined behavior [-Waggressive-loop-optimizations]
259 | while(size) ptr[--size].~T();
| ~~~~~~~~~~~~~~^~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:11: note: within this loop
259 | while(size) ptr[--size].~T();
| ^~~~
g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/TMB/include' -I'/usr/lib/R/site-library/RcppEigen/include' -fopenmp -fpic -g -O2 -ffile-prefix-map=/build/r-base-4lrxNK/r-base-4.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.cpp -o utils.o
g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o glmmTMB.so glmmTMB.o utils.o -fopenmp -L/usr/lib/R/lib -lR
"/usr/lib/R/bin/Rscript" -e "cat(as.character(packageVersion('TMB')), '\n', sep="", file='../inst/TMB-version')"
"/usr/lib/R/bin/Rscript" -e "cat(as.character(packageVersion('Matrix')), '\n', sep="", file='../inst/Matrix-version')"
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-glmmtmb/usr/lib/R/site-library/00LOCK-r-cran-glmmtmb-1.1.2.3/00new/glmmTMB/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glmmTMB)
W: Ignoring specified R dependency: R (>= 3.2.0)
I: Using r-cran-glmmtmb for Recommends:glmmtmb
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-lattice for Suggests:lattice
I: Using r-cran-ggplot2 for Suggests:ggplot2 (>= 2.2.1)
I: Using r-cran-mlmrev for Suggests:mlmRev
I: Using r-cran-bbmle for Suggests:bbmle (>= 1.0.19)
I: Using r-cran-pscl for Suggests:pscl
I: Using r-cran-coda for Suggests:coda
I: Using r-cran-reshape2 for Suggests:reshape2
I: Using r-cran-car for Suggests:car (>= 3.0.6)
I: Using r-cran-emmeans for Suggests:emmeans (>= 1.4)
I: Using r-cran-estimability for Suggests:estimability
W: Cannot find a debian package for Suggests:DHARMa
I: Using r-cran-multcomp for Suggests:multcomp
W: Cannot find a debian package for Suggests:MuMIn
I: Using r-cran-effects for Suggests:effects (>= 4.0-1)
W: Cannot find a debian package for Suggests:dotwhisker
I: Using r-cran-broom for Suggests:broom
I: Using r-cran-broom.mixed for Suggests:broom.mixed
I: Using r-cran-plyr for Suggests:plyr
I: Using r-cran-png for Suggests:png
I: Using r-cran-boot for Suggests:boot
W: Cannot find a debian package for Suggests:texreg
I: Using r-cran-xtable for Suggests:xtable
W: Cannot find a debian package for Suggests:huxtable
W: Cannot find a debian package for Suggests:mvabund
I: Using r-cran-tmb for Imports:TMB (>= 1.7.14)
I: Using r-cran-lme4 for Imports:lme4 (>= 1.1-18.9000)
I: Using r-cran-matrix for Imports:Matrix
I: Using r-cran-nlme for Imports:nlme
I: Using r-cran-numderiv for Imports:numDeriv
I: Using r-cran-tmb for LinkingTo:TMB
I: Using r-cran-rcppeigen for LinkingTo:RcppEigen
I: Use r-cran-glmmtmb as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-glmmtmb-dbgsym' in '../r-cran-glmmtmb-dbgsym_1.1.2.3-2_armhf.deb'.
dpkg-deb: building package 'r-cran-glmmtmb' in '../r-cran-glmmtmb_1.1.2.3-2_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-cran-glmmtmb_1.1.2.3-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-01-01T05:26:31Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-glmmtmb_1.1.2.3-2_armhf.changes:
---------------------------------------
Format: 1.8
Date: Mon, 27 Dec 2021 09:18:07 +0000
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb r-cran-glmmtmb-dbgsym
Architecture: armhf
Version: 1.1.2.3-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Graham Inggs <ginggs@debian.org>
Description:
r-cran-glmmtmb - Generalized Linear Mixed Models using Template Model Builder
Closes: 981623
Changes:
r-cran-glmmtmb (1.1.2.3-2) unstable; urgency=medium
.
* Team upload
* Add autopkgtest that fails when r-cran-tmb is upgraded and
r-cran-glmmtmb needs a rebuild (Closes: #981623)
Checksums-Sha1:
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Files:
b02f25a129835afb9c86c11f3c9b0882 11654472 debug optional r-cran-glmmtmb-dbgsym_1.1.2.3-2_armhf.deb
c916a3e13df07a13cff5238ed1c186cf 9977 gnu-r optional r-cran-glmmtmb_1.1.2.3-2_armhf.buildinfo
06f414f44f1b2217695a905b8e47dc31 4394716 gnu-r optional r-cran-glmmtmb_1.1.2.3-2_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-glmmtmb-dbgsym_1.1.2.3-2_armhf.deb
-----------------------------------------
new Debian package, version 2.0.
size 11654472 bytes: control archive=540 bytes.
398 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-glmmtmb-dbgsym
Source: r-cran-glmmtmb
Version: 1.1.2.3-2
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 11707
Depends: r-cran-glmmtmb (= 1.1.2.3-2)
Section: debug
Priority: optional
Description: debug symbols for r-cran-glmmtmb
Build-Ids: 8799c95116bd409fc8c2f720e5f250ae5ab27999
drwxr-xr-x root/root 0 2021-12-27 09:18 ./
drwxr-xr-x root/root 0 2021-12-27 09:18 ./usr/
drwxr-xr-x root/root 0 2021-12-27 09:18 ./usr/lib/
drwxr-xr-x root/root 0 2021-12-27 09:18 ./usr/lib/debug/
drwxr-xr-x root/root 0 2021-12-27 09:18 ./usr/lib/debug/.build-id/
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drwxr-xr-x root/root 0 2021-12-27 09:18 ./usr/share/
drwxr-xr-x root/root 0 2021-12-27 09:18 ./usr/share/doc/
lrwxrwxrwx root/root 0 2021-12-27 09:18 ./usr/share/doc/r-cran-glmmtmb-dbgsym -> r-cran-glmmtmb
r-cran-glmmtmb_1.1.2.3-2_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 4394716 bytes: control archive=4140 bytes.
1351 bytes, 17 lines control
10148 bytes, 117 lines md5sums
Package: r-cran-glmmtmb
Version: 1.1.2.3-2
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 6290
Depends: r-base-core (>= 4.1.2-1), r-api-4.0, r-cran-tmb (>= 1.7.14), r-cran-lme4 (>= 1.1-18.9000), r-cran-matrix, r-cran-nlme, r-cran-numderiv, r-cran-rcppeigen, libc6 (>= 2.29), libgcc-s1 (>= 3.5), libgomp1 (>= 4.9), libstdc++6 (>= 11)
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat, r-cran-mass, r-cran-lattice, r-cran-ggplot2 (>= 2.2.1), r-cran-mlmrev, r-cran-bbmle (>= 1.0.19), r-cran-pscl, r-cran-coda, r-cran-reshape2, r-cran-car (>= 3.0.6), r-cran-emmeans (>= 1.4), r-cran-estimability, r-cran-multcomp, r-cran-effects (>= 4.0-1), r-cran-broom, r-cran-broom.mixed, r-cran-plyr, r-cran-png, r-cran-boot, r-cran-xtable
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=glmmTMB
Description: Generalized Linear Mixed Models using Template Model Builder
Fit linear and generalized linear mixed models with various
extensions, including zero-inflation. The models are fitted using maximum
likelihood estimation via 'TMB' (Template Model Builder). Random effects are
assumed to be Gaussian on the scale of the linear predictor and are integrated
out using the Laplace approximation. Gradients are calculated using automatic
differentiation.
drwxr-xr-x root/root 0 2021-12-27 09:18 ./
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| Summary |
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Build Architecture: armhf
Build-Space: 39432
Build-Time: 394
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 684
Job: r-cran-glmmtmb_1.1.2.3-2
Machine Architecture: armhf
Package: r-cran-glmmtmb
Package-Time: 1099
Source-Version: 1.1.2.3-2
Space: 39432
Status: successful
Version: 1.1.2.3-2
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Finished at 2022-01-01T05:26:31Z
Build needed 00:18:19, 39432k disk space