r-cran-glmmtmb →
1.0.0-1 →
armhf → 2020-02-16 22:08:02
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testwandboard
+==============================================================================+
| r-cran-glmmtmb 1.0.0-1 (armhf) Sun, 16 Feb 2020 21:23:04 +0000 |
+==============================================================================+
Package: r-cran-glmmtmb
Version: 1.0.0-1
Source Version: 1.0.0-1
Distribution: bullseye-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bullseye-staging-armhf-sbuild-31ba0566-c3f2-4e8d-9690-7849baa94ba0' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private bullseye-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private bullseye-staging/main Sources [11.5 MB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf Packages [12.7 MB]
Fetched 24.2 MB in 30s (798 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-glmmtmb' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2864 kB of source archives.
Get:1 http://172.17.0.1/private bullseye-staging/main r-cran-glmmtmb 1.0.0-1 (dsc) [2192 B]
Get:2 http://172.17.0.1/private bullseye-staging/main r-cran-glmmtmb 1.0.0-1 (tar) [2849 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main r-cran-glmmtmb 1.0.0-1 (diff) [13.0 kB]
Fetched 2864 kB in 1s (2007 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-cHTKck/r-cran-glmmtmb-1.0.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-cHTKck' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-TnaeIK/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-TnaeIK/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-TnaeIK/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ Packages [429 B]
Fetched 2105 B in 1s (2679 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 7 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12236 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-tmb, r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-rcppeigen
Filtered Build-Depends: debhelper-compat (= 12), dh-r, r-base-dev, r-cran-tmb, r-cran-lme4, r-cran-matrix, r-cran-nlme, r-cran-rcppeigen
dpkg-deb: building package 'sbuild-build-depends-r-cran-glmmtmb-dummy' in '/<<BUILDDIR>>/resolver-TnaeIK/apt_archive/sbuild-build-depends-r-cran-glmmtmb-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-glmmtmb-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ Sources [537 B]
Get:5 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ Packages [617 B]
Fetched 2487 B in 1s (3365 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-glmmtmb build dependencies (apt-based resolver)
--------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
libpam-cap netbase
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gcc-7-base gettext
gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian
libarchive-zip-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-9-dev libgfortran4 libgfortran5
libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6
libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libnlopt0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtinfo5 libtk8.6 libtool libuchardet0 libwebp6 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db openssl
pkg-config po-debconf r-base-core r-base-dev r-cran-boot r-cran-lattice
r-cran-littler r-cran-lme4 r-cran-mass r-cran-matrix r-cran-minqa
r-cran-nlme r-cran-nloptr r-cran-pkgkitten r-cran-rcpp r-cran-rcppeigen
r-cran-tmb sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g
zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation debtags dh-make gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-9-doc libcoarrays-dev groff liblapack-doc krb5-doc
krb5-user icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6
libtool-doc gcj-jdk m4-doc apparmor less www-browser libmail-box-perl
elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-plain-generic texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-cran-getopt r-cran-inline r-cran-numderiv
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libgpm2 libpng-tools
publicsuffix libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gcc-7-base gettext
gettext-base gfortran gfortran-9 groff-base icu-devtools intltool-debian
libarchive-zip-perl libblas-dev libblas3 libbrotli1 libbsd0 libbz2-dev
libcairo2 libcroco3 libcurl4 libdatrie1 libdebhelper-perl libelf1 libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-9-dev libgfortran4 libgfortran5
libglib2.0-0 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6
libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
liblzma-dev libmagic-mgc libmagic1 libncurses-dev libncurses5-dev
libncurses6 libnghttp2-14 libnlopt0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-dev libpcre2-posix2 libpcre3-dev libpcre32-3
libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16 libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libsub-override-perl libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5
libtinfo5 libtk8.6 libtool libuchardet0 libwebp6 libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db openssl
pkg-config po-debconf r-base-core r-base-dev r-cran-boot r-cran-lattice
r-cran-littler r-cran-lme4 r-cran-mass r-cran-matrix r-cran-minqa
r-cran-nlme r-cran-nloptr r-cran-pkgkitten r-cran-rcpp r-cran-rcppeigen
r-cran-tmb sbuild-build-depends-r-cran-glmmtmb-dummy sensible-utils ucf
unzip x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
zlib1g
1 upgraded, 149 newly installed, 0 to remove and 6 not upgraded.
Need to get 102 MB of archives.
After this operation, 285 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-TnaeIK/apt_archive ./ sbuild-build-depends-r-cran-glmmtmb-dummy 0.invalid.0 [904 B]
Get:2 http://172.17.0.1/private bullseye-staging/main armhf libbsd0 armhf 0.10.0-1 [112 kB]
Get:3 http://172.17.0.1/private bullseye-staging/main armhf libtinfo5 armhf 6.1+20191019-1 [316 kB]
Get:4 http://172.17.0.1/private bullseye-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:5 http://172.17.0.1/private bullseye-staging/main armhf libuchardet0 armhf 0.0.6-3 [62.2 kB]
Get:6 http://172.17.0.1/private bullseye-staging/main armhf groff-base armhf 1.22.4-4 [783 kB]
Get:7 http://172.17.0.1/private bullseye-staging/main armhf libpipeline1 armhf 1.5.2-2 [29.6 kB]
Get:8 http://172.17.0.1/private bullseye-staging/main armhf zlib1g armhf 1:1.2.11.dfsg-1.2 [84.6 kB]
Get:9 http://172.17.0.1/private bullseye-staging/main armhf man-db armhf 2.9.0-2 [1261 kB]
Get:10 http://172.17.0.1/private bullseye-staging/main armhf gcc-7-base armhf 7.5.0-3+b1 [192 kB]
Get:11 http://172.17.0.1/private bullseye-staging/main armhf sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:12 http://172.17.0.1/private bullseye-staging/main armhf libmagic-mgc armhf 1:5.38-4 [262 kB]
Get:13 http://172.17.0.1/private bullseye-staging/main armhf libmagic1 armhf 1:5.38-4 [112 kB]
Get:14 http://172.17.0.1/private bullseye-staging/main armhf file armhf 1:5.38-4 [66.9 kB]
Get:15 http://172.17.0.1/private bullseye-staging/main armhf gettext-base armhf 0.19.8.1-10 [117 kB]
Get:16 http://172.17.0.1/private bullseye-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:17 http://172.17.0.1/private bullseye-staging/main armhf ucf all 3.0038+nmu1 [69.0 kB]
Get:18 http://172.17.0.1/private bullseye-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:19 http://172.17.0.1/private bullseye-staging/main armhf m4 armhf 1.4.18-4 [185 kB]
Get:20 http://172.17.0.1/private bullseye-staging/main armhf autoconf all 2.69-11.1 [341 kB]
Get:21 http://172.17.0.1/private bullseye-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:22 http://172.17.0.1/private bullseye-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:23 http://172.17.0.1/private bullseye-staging/main armhf autopoint all 0.19.8.1-10 [435 kB]
Get:24 http://172.17.0.1/private bullseye-staging/main armhf libssl1.1 armhf 1.1.1d-2 [1268 kB]
Get:25 http://172.17.0.1/private bullseye-staging/main armhf openssl armhf 1.1.1d-2 [806 kB]
Get:26 http://172.17.0.1/private bullseye-staging/main armhf ca-certificates all 20190110 [157 kB]
Get:27 http://172.17.0.1/private bullseye-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:28 http://172.17.0.1/private bullseye-staging/main armhf libtool all 2.4.6-11 [547 kB]
Get:29 http://172.17.0.1/private bullseye-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:30 http://172.17.0.1/private bullseye-staging/main armhf libdebhelper-perl all 12.9 [183 kB]
Get:31 http://172.17.0.1/private bullseye-staging/main armhf libarchive-zip-perl all 1.67-1 [104 kB]
Get:32 http://172.17.0.1/private bullseye-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:33 http://172.17.0.1/private bullseye-staging/main armhf libfile-stripnondeterminism-perl all 1.6.3-2 [23.7 kB]
Get:34 http://172.17.0.1/private bullseye-staging/main armhf dh-strip-nondeterminism all 1.6.3-2 [14.7 kB]
Get:35 http://172.17.0.1/private bullseye-staging/main armhf libelf1 armhf 0.176-1.1 [158 kB]
Get:36 http://172.17.0.1/private bullseye-staging/main armhf dwz armhf 0.13-5 [142 kB]
Get:37 http://172.17.0.1/private bullseye-staging/main armhf libglib2.0-0 armhf 2.62.4-1+rpi1 [1137 kB]
Get:38 http://172.17.0.1/private bullseye-staging/main armhf libicu63 armhf 63.2-2 [7974 kB]
Get:39 http://172.17.0.1/private bullseye-staging/main armhf libxml2 armhf 2.9.4+dfsg1-8 [593 kB]
Get:40 http://172.17.0.1/private bullseye-staging/main armhf libcroco3 armhf 0.6.13-1 [133 kB]
Get:41 http://172.17.0.1/private bullseye-staging/main armhf gettext armhf 0.19.8.1-10 [1219 kB]
Get:42 http://172.17.0.1/private bullseye-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:43 http://172.17.0.1/private bullseye-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:44 http://172.17.0.1/private bullseye-staging/main armhf debhelper all 12.9 [994 kB]
Get:45 http://172.17.0.1/private bullseye-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:46 http://172.17.0.1/private bullseye-staging/main armhf unzip armhf 6.0-25 [152 kB]
Get:47 http://172.17.0.1/private bullseye-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:48 http://172.17.0.1/private bullseye-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:49 http://172.17.0.1/private bullseye-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:50 http://172.17.0.1/private bullseye-staging/main armhf libblas3 armhf 3.9.0-1 [108 kB]
Get:51 http://172.17.0.1/private bullseye-staging/main armhf libexpat1 armhf 2.2.9-1 [71.5 kB]
Get:52 http://172.17.0.1/private bullseye-staging/main armhf libpng16-16 armhf 1.6.37-2 [274 kB]
Get:53 http://172.17.0.1/private bullseye-staging/main armhf libfreetype6 armhf 2.10.1-2 [330 kB]
Get:54 http://172.17.0.1/private bullseye-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:55 http://172.17.0.1/private bullseye-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:56 http://172.17.0.1/private bullseye-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:57 http://172.17.0.1/private bullseye-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:58 http://172.17.0.1/private bullseye-staging/main armhf libxau6 armhf 1:1.0.8-1+b2 [19.1 kB]
Get:59 http://172.17.0.1/private bullseye-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:60 http://172.17.0.1/private bullseye-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:61 http://172.17.0.1/private bullseye-staging/main armhf libx11-data all 2:1.6.8-1 [298 kB]
Get:62 http://172.17.0.1/private bullseye-staging/main armhf libx11-6 armhf 2:1.6.8-1 [691 kB]
Get:63 http://172.17.0.1/private bullseye-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:64 http://172.17.0.1/private bullseye-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:65 http://172.17.0.1/private bullseye-staging/main armhf libxext6 armhf 2:1.3.3-1+b2 [47.8 kB]
Get:66 http://172.17.0.1/private bullseye-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:67 http://172.17.0.1/private bullseye-staging/main armhf libcairo2 armhf 1.16.0-4 [599 kB]
Get:68 http://172.17.0.1/private bullseye-staging/main armhf libbrotli1 armhf 1.0.7-6 [261 kB]
Get:69 http://172.17.0.1/private bullseye-staging/main armhf libkeyutils1 armhf 1.6.1-2 [14.5 kB]
Get:70 http://172.17.0.1/private bullseye-staging/main armhf libkrb5support0 armhf 1.17-6+b1 [61.5 kB]
Get:71 http://172.17.0.1/private bullseye-staging/main armhf libk5crypto3 armhf 1.17-6+b1 [112 kB]
Get:72 http://172.17.0.1/private bullseye-staging/main armhf libkrb5-3 armhf 1.17-6+b1 [316 kB]
Get:73 http://172.17.0.1/private bullseye-staging/main armhf libgssapi-krb5-2 armhf 1.17-6+b1 [134 kB]
Get:74 http://172.17.0.1/private bullseye-staging/main armhf libnghttp2-14 armhf 1.40.0-1+b2 [74.2 kB]
Get:75 http://172.17.0.1/private bullseye-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:76 http://172.17.0.1/private bullseye-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b1 [54.3 kB]
Get:77 http://172.17.0.1/private bullseye-staging/main armhf libssh2-1 armhf 1.8.0-2.1 [126 kB]
Get:78 http://172.17.0.1/private bullseye-staging/main armhf libcurl4 armhf 7.67.0-2 [286 kB]
Get:79 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo armhf 1:1.5.2-2+b1 [110 kB]
Get:80 http://172.17.0.1/private bullseye-staging/main armhf libgfortran5 armhf 9.2.1-25+rpi1 [231 kB]
Get:81 http://172.17.0.1/private bullseye-staging/main armhf liblapack3 armhf 3.9.0-1 [1597 kB]
Get:82 http://172.17.0.1/private bullseye-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:83 http://172.17.0.1/private bullseye-staging/main armhf libfribidi0 armhf 1.0.7-1.1 [62.8 kB]
Get:84 http://172.17.0.1/private bullseye-staging/main armhf libthai-data all 0.1.28-3 [170 kB]
Get:85 http://172.17.0.1/private bullseye-staging/main armhf libdatrie1 armhf 0.2.12-3+b1 [36.4 kB]
Get:86 http://172.17.0.1/private bullseye-staging/main armhf libthai0 armhf 0.1.28-3 [51.0 kB]
Get:87 http://172.17.0.1/private bullseye-staging/main armhf libpango-1.0-0 armhf 1.42.4-7+b1 [168 kB]
Get:88 http://172.17.0.1/private bullseye-staging/main armhf libgraphite2-3 armhf 1.3.13-11 [70.1 kB]
Get:89 http://172.17.0.1/private bullseye-staging/main armhf libharfbuzz0b armhf 2.6.4-1+rpi1 [1308 kB]
Get:90 http://172.17.0.1/private bullseye-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-7+b1 [62.2 kB]
Get:91 http://172.17.0.1/private bullseye-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-7+b1 [51.9 kB]
Get:92 http://172.17.0.1/private bullseye-staging/main armhf libtcl8.6 armhf 8.6.10+dfsg-1 [886 kB]
Get:93 http://172.17.0.1/private bullseye-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:94 http://172.17.0.1/private bullseye-staging/main armhf libwebp6 armhf 0.6.1-2 [228 kB]
Get:95 http://172.17.0.1/private bullseye-staging/main armhf libtiff5 armhf 4.1.0+git191117-2 [250 kB]
Get:96 http://172.17.0.1/private bullseye-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:97 http://172.17.0.1/private bullseye-staging/main armhf x11-common all 1:7.7+20 [252 kB]
Get:98 http://172.17.0.1/private bullseye-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:99 http://172.17.0.1/private bullseye-staging/main armhf libtk8.6 armhf 8.6.10-1 [678 kB]
Get:100 http://172.17.0.1/private bullseye-staging/main armhf libice6 armhf 2:1.0.9-2 [51.6 kB]
Get:101 http://172.17.0.1/private bullseye-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:102 http://172.17.0.1/private bullseye-staging/main armhf libxt6 armhf 1:1.1.5-1+b3 [156 kB]
Get:103 http://172.17.0.1/private bullseye-staging/main armhf r-base-core armhf 3.6.2-2 [24.3 MB]
Get:104 http://172.17.0.1/private bullseye-staging/main armhf libgfortran-9-dev armhf 9.2.1-25+rpi1 [279 kB]
Get:105 http://172.17.0.1/private bullseye-staging/main armhf gfortran-9 armhf 9.2.1-25+rpi1 [8095 kB]
Get:106 http://172.17.0.1/private bullseye-staging/main armhf gfortran armhf 4:9.2.1-3.1+rpi1 [1440 B]
Get:107 http://172.17.0.1/private bullseye-staging/main armhf libblas-dev armhf 3.9.0-1 [113 kB]
Get:108 http://172.17.0.1/private bullseye-staging/main armhf liblapack-dev armhf 3.9.0-1 [2981 kB]
Get:109 http://172.17.0.1/private bullseye-staging/main armhf libncurses6 armhf 6.1+20191019-1 [79.5 kB]
Get:110 http://172.17.0.1/private bullseye-staging/main armhf libncurses-dev armhf 6.1+20191019-1 [284 kB]
Get:111 http://172.17.0.1/private bullseye-staging/main armhf libncurses5-dev armhf 6.1+20191019-1 [940 B]
Get:112 http://172.17.0.1/private bullseye-staging/main armhf libreadline-dev armhf 8.0-3 [114 kB]
Get:113 http://172.17.0.1/private bullseye-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.2-2+b1 [179 kB]
Get:114 http://172.17.0.1/private bullseye-staging/main armhf libjpeg-dev all 1:1.5.2-2 [57.5 kB]
Get:115 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-16-0 armhf 10.34-7 [190 kB]
Get:116 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-32-0 armhf 10.34-7 [181 kB]
Get:117 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-posix2 armhf 10.34-7 [44.7 kB]
Get:118 http://172.17.0.1/private bullseye-staging/main armhf libpcre2-dev armhf 10.34-7 [614 kB]
Get:119 http://172.17.0.1/private bullseye-staging/main armhf libpcre16-3 armhf 2:8.39-12 [234 kB]
Get:120 http://172.17.0.1/private bullseye-staging/main armhf libpcre32-3 armhf 2:8.39-12 [227 kB]
Get:121 http://172.17.0.1/private bullseye-staging/main armhf libpcrecpp0v5 armhf 2:8.39-12 [150 kB]
Get:122 http://172.17.0.1/private bullseye-staging/main armhf libpcre3-dev armhf 2:8.39-12 [564 kB]
Get:123 http://172.17.0.1/private bullseye-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1.2 [203 kB]
Get:124 http://172.17.0.1/private bullseye-staging/main armhf libpng-dev armhf 1.6.37-2 [276 kB]
Get:125 http://172.17.0.1/private bullseye-staging/main armhf libbz2-dev armhf 1.0.8-2 [27.7 kB]
Get:126 http://172.17.0.1/private bullseye-staging/main armhf liblzma-dev armhf 5.2.4-1 [203 kB]
Get:127 http://172.17.0.1/private bullseye-staging/main armhf icu-devtools armhf 63.2-2 [163 kB]
Get:128 http://172.17.0.1/private bullseye-staging/main armhf libicu-dev armhf 63.2-2 [8846 kB]
Get:129 http://172.17.0.1/private bullseye-staging/main armhf libxmuu1 armhf 2:1.1.2-2+b3 [23.4 kB]
Get:130 http://172.17.0.1/private bullseye-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:131 http://172.17.0.1/private bullseye-staging/main armhf pkg-config armhf 0.29-6 [59.8 kB]
Get:132 http://172.17.0.1/private bullseye-staging/main armhf r-base-dev all 3.6.2-2 [4488 B]
Get:133 http://172.17.0.1/private bullseye-staging/main armhf libfile-which-perl all 1.23-1 [16.6 kB]
Get:134 http://172.17.0.1/private bullseye-staging/main armhf dh-r all 20200104 [38.2 kB]
Get:135 http://172.17.0.1/private bullseye-staging/main armhf libgfortran4 armhf 7.5.0-3+b1 [190 kB]
Get:136 http://172.17.0.1/private bullseye-staging/main armhf libnlopt0 armhf 2.6.1-7 [138 kB]
Get:137 http://172.17.0.1/private bullseye-staging/main armhf r-cran-littler armhf 0.3.9-1 [308 kB]
Get:138 http://172.17.0.1/private bullseye-staging/main armhf littler all 0.3.9-1 [14.6 kB]
Get:139 http://172.17.0.1/private bullseye-staging/main armhf r-cran-boot all 1.3-24-2 [621 kB]
Get:140 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lattice armhf 0.20-38-1 [1120 kB]
Get:141 http://172.17.0.1/private bullseye-staging/main armhf r-cran-matrix armhf 1.2-18-1 [3468 kB]
Get:142 http://172.17.0.1/private bullseye-staging/main armhf r-cran-mass armhf 7.3-51.5-2 [1118 kB]
Get:143 http://172.17.0.1/private bullseye-staging/main armhf r-cran-nlme armhf 3.1.144-1 [2256 kB]
Get:144 http://172.17.0.1/private bullseye-staging/main armhf r-cran-pkgkitten all 0.1.5-1 [23.8 kB]
Get:145 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcpp armhf 1.0.3-1 [1928 kB]
Get:146 http://172.17.0.1/private bullseye-staging/main armhf r-cran-minqa armhf 1.2.4-1+b1 [101 kB]
Get:147 http://172.17.0.1/private bullseye-staging/main armhf r-cran-nloptr armhf 1.2.1-1 [279 kB]
Get:148 http://172.17.0.1/private bullseye-staging/main armhf r-cran-rcppeigen armhf 0.3.3.7.0-1 [1336 kB]
Get:149 http://172.17.0.1/private bullseye-staging/main armhf r-cran-lme4 armhf 1.1-21-2 [4845 kB]
Get:150 http://172.17.0.1/private bullseye-staging/main armhf r-cran-tmb armhf 1.7.16-1 [845 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package libbsd0:armhf.
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Unpacking libbsd0:armhf (0.10.0-1) ...
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Unpacking zlib1g:armhf (1:1.2.11.dfsg-1.2) over (1:1.2.11.dfsg-1) ...
Setting up zlib1g:armhf (1:1.2.11.dfsg-1.2) ...
Selecting previously unselected package man-db.
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Unpacking man-db (2.9.0-2) ...
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Unpacking gcc-7-base:armhf (7.5.0-3+b1) ...
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Unpacking libmagic-mgc (1:5.38-4) ...
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Selecting previously unselected package file.
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Unpacking file (1:5.38-4) ...
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Unpacking gettext-base (0.19.8.1-10) ...
Selecting previously unselected package libswitch-perl.
Preparing to unpack .../007-libswitch-perl_2.17-2_all.deb ...
Unpacking libswitch-perl (2.17-2) ...
Selecting previously unselected package ucf.
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Moving old data out of the way
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Selecting previously unselected package libsigsegv2:armhf.
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Unpacking libsigsegv2:armhf (2.12-2) ...
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Unpacking m4 (1.4.18-4) ...
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Unpacking autoconf (2.69-11.1) ...
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Unpacking automake (1:1.16.1-4) ...
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Unpacking autopoint (0.19.8.1-10) ...
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Selecting previously unselected package openssl.
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Unpacking openssl (1.1.1d-2) ...
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Unpacking ca-certificates (20190110) ...
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Unpacking dctrl-tools (2.24-3) ...
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Unpacking libcairo2:armhf (1.16.0-4) ...
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Unpacking libkeyutils1:armhf (1.6.1-2) ...
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
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Setting up dh-strip-nondeterminism (1.6.3-2) ...
Setting up dwz (0.13-5) ...
Setting up groff-base (1.22.4-4) ...
Setting up libncurses5-dev:armhf (6.1+20191019-1) ...
Setting up libcurl4:armhf (7.67.0-2) ...
Setting up libx11-6:armhf (2:1.6.8-1) ...
Setting up libharfbuzz0b:armhf (2.6.4-1+rpi1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2+b3) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libpaper1:armhf (1.1.28) ...
Creating config file /etc/papersize with new version
Setting up gettext (0.19.8.1-10) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up gfortran-9 (9.2.1-25+rpi1) ...
Setting up fontconfig-config (2.13.1-2) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libpaper-utils (1.1.28) ...
Setting up man-db (2.9.0-2) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:9.2.1-3.1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up intltool-debian (0.35.0+20060710.5) ...
Setting up libxt6:armhf (1:1.1.5-1+b3) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.2-2) ...
Setting up po-debconf (1.0.21) ...
Setting up libtk8.6:armhf (8.6.10-1) ...
Setting up libpango-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libcairo2:armhf (1.16.0-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-7+b1) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-7+b1) ...
Setting up r-base-core (3.6.2-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-lattice (0.20-38-1) ...
Setting up r-cran-nlme (3.1.144-1) ...
Setting up r-cran-pkgkitten (0.1.5-1) ...
Setting up r-cran-littler (0.3.9-1) ...
Setting up r-cran-rcpp (1.0.3-1) ...
Setting up r-cran-nloptr (1.2.1-1) ...
Setting up r-cran-boot (1.3-24-2) ...
Setting up r-base-dev (3.6.2-2) ...
Setting up littler (0.3.9-1) ...
Setting up r-cran-mass (7.3-51.5-2) ...
Setting up r-cran-matrix (1.2-18-1) ...
Setting up r-cran-rcppeigen (0.3.3.7.0-1) ...
Setting up r-cran-minqa (1.2.4-1+b1) ...
Setting up r-cran-lme4 (1.1-21-2) ...
Setting up r-cran-tmb (1.7.16-1) ...
Setting up dh-autoreconf (19) ...
Setting up debhelper (12.9) ...
Setting up dh-r (20200104) ...
Setting up sbuild-build-depends-r-cran-glmmtmb-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.29-9+rpi1) ...
Processing triggers for ca-certificates (20190110) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.33.90.20200122-2+rpi1 dpkg-dev_1.19.7 g++-9_9.2.1-25+rpi1 gcc-9_9.2.1-25+rpi1 libc6-dev_2.29-9+rpi1 libstdc++-9-dev_9.2.1-25+rpi1 libstdc++6_9.2.1-25+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2
Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11.1 automake_1:1.16.1-4 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11+rpi1 base-passwd_3.5.47 bash_5.0-5 binutils_2.33.90.20200122-2+rpi1 binutils-arm-linux-gnueabihf_2.33.90.20200122-2+rpi1 binutils-common_2.33.90.20200122-2+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 ca-certificates_20190110 coreutils_8.30-3 cpp_4:9.2.1-3.1+rpi1 cpp-9_9.2.1-25+rpi1 dash_0.5.10.2-6 dctrl-tools_2.24-3 debconf_1.5.73 debhelper_12.9 debianutils_4.9.1 dh-autoreconf_19 dh-r_20200104 dh-strip-nondeterminism_1.6.3-2 diffutils_1:3.7-3 dirmngr_2.2.19-1 dpkg_1.19.7 dpkg-dev_1.19.7 dwz_0.13-5 e2fsprogs_1.45.5-2 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.38-4 findutils_4.7.0-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1+rpi1 g++-9_9.2.1-25+rpi1 gcc_4:9.2.1-3.1+rpi1 gcc-7-base_7.5.0-3+b1 gcc-9_9.2.1-25+rpi1 gcc-9-base_9.2.1-25+rpi1 gettext_0.19.8.1-10 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libcroco3_0.6.13-1 libcrypt-dev_1:4.4.10-10+b5 libcrypt1_1:4.4.10-10+b5 libctf-nobfd0_2.33.90.20200122-2+rpi1 libctf0_2.33.90.20200122-2+rpi1 libcurl4_7.67.0-2 libdatrie1_0.2.12-3+b1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.250 libdebhelper-perl_12.9 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.5-2 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi7_3.3-3 libfile-stripnondeterminism-perl_1.6.3-2 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2 libfreetype6_2.10.1-2 libfribidi0_1.0.7-1.1 libgcc-9-dev_9.2.1-25+rpi1 libgcc1_1:9.2.1-25+rpi1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgfortran-9-dev_9.2.1-25+rpi1 libgfortran4_7.5.0-3+b1 libgfortran5_9.2.1-25+rpi1 libglib2.0-0_2.62.4-1+rpi1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.11.1-2 libgomp1_9.2.1-25+rpi1 libgpg-error0_1.36-7 libgraphite2-3_1.3.13-11 libgssapi-krb5-2_1.17-6+b1 libharfbuzz0b_2.6.4-1+rpi1 libhogweed5_3.5.1+really3.5.1-2 libice6_2:1.0.9-2 libicu-dev_63.2-2 libicu63_63.2-2 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libtiff5_4.1.0+git191117-2 libtinfo5_6.1+20191019-1 libtinfo6_6.1+20191019-1 libtk8.6_8.6.10-1 libtool_2.4.6-11 libubsan1_9.2.1-25+rpi1 libuchardet0_0.0.6-3 libudev1_244.1-1+rpi1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-8 libxmuu1_2:1.1.2-2+b3 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1+b3 libzstd1_1.4.4+dfsg-1+rpi1 linux-libc-dev_5.2.17-1+rpi1+b2 littler_0.3.9-1 login_1:4.8-1 logsave_1.45.5-2 lsb-base_11.1.0+rpi1 m4_1.4.18-4 make_4.2.1-1.2 man-db_2.9.0-2 mawk_1.3.4.20200120-1 mount_2.34-0.1 ncurses-base_6.1+20191019-1 ncurses-bin_6.1+20191019-1 netbase_6.0 openssl_1.1.1d-2 passwd_1:4.8-1 patch_2.7.6-6 perl_5.30.0-9 perl-base_5.30.0-9 perl-modules-5.30_5.30.0-9 pinentry-curses_1.1.0-3 pkg-config_0.29-6 po-debconf_1.0.21 r-base-core_3.6.2-2 r-base-dev_3.6.2-2 r-cran-boot_1.3-24-2 r-cran-lattice_0.20-38-1 r-cran-littler_0.3.9-1 r-cran-lme4_1.1-21-2 r-cran-mass_7.3-51.5-2 r-cran-matrix_1.2-18-1 r-cran-minqa_1.2.4-1+b1 r-cran-nlme_3.1.144-1 r-cran-nloptr_1.2.1-1 r-cran-pkgkitten_0.1.5-1 r-cran-rcpp_1.0.3-1 r-cran-rcppeigen_0.3.3.7.0-1 r-cran-tmb_1.7.16-1 raspbian-archive-keyring_20120528.2 readline-common_8.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-glmmtmb-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-2.1 tar_1.30+dfsg-6 tzdata_2019c-3 ucf_3.0038+nmu1 unzip_6.0-25 util-linux_2.34-0.1 x11-common_1:7.7+20 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.4-1 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1.2 zlib1g-dev_1:1.2.11.dfsg-1.2
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Tue Feb 11 10:30:02 2020 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-glmmtmb_1.0.0-1.dsc
dpkg-source: info: extracting r-cran-glmmtmb in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-glmmtmb_1.0.0.orig.tar.gz
dpkg-source: info: unpacking r-cran-glmmtmb_1.0.0-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bullseye-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bullseye-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bullseye-staging-armhf-sbuild-31ba0566-c3f2-4e8d-9690-7849baa94ba0
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-glmmtmb
dpkg-buildpackage: info: source version 1.0.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: testthat, pscl
I: R Package: glmmTMB Version: 1.0.0
I: Building using R version 3.6.2-2
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Tue, 11 Feb 2020 11:14:57 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-glmmtmb/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-glmmtmb/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 11 Feb 2020 11:14:57 +0100'"
* installing *source* package 'glmmTMB' ...
** package 'glmmTMB' successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C++ compiler... yes
checking whether g++ -std=gnu++11 accepts -g... yes
checking how to run the C++ preprocessor... g++ -std=gnu++11 -E
checking for g++ -std=gnu++11 option to support OpenMP... -fopenmp
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/TMB/include" -I"/usr/lib/R/site-library/RcppEigen/include" -fopenmp -DARMA_64BIT_WORD -fpic -g -O2 -fdebug-prefix-map=/build/r-base-BI9Pjj/r-base-3.6.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glmmTMB.cpp -o glmmTMB.o
In file included from /usr/include/c++/9/vector:72,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:15,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:54,
from glmmTMB.cpp:1:
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<double>, int>}; _Tp = Eigen::Triplet<CppAD::AD<double>, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<double>, int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<double>, int>, std::allocator<Eigen::Triplet<CppAD::AD<double>, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<double>, int>*, std::vector<Eigen::Triplet<CppAD::AD<double>, int>, std::allocator<Eigen::Triplet<CppAD::AD<double>, int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<double>]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<double>, int>*, std::vector<Eigen::Triplet<CppAD::AD<double>, int>, std::allocator<Eigen::Triplet<CppAD::AD<double>, int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = double]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>}; _Tp = Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> > > >'} changed in GCC 7.1
426 | vector<_Tp, _Alloc>::
| ^~~~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>}; _Tp = Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> >]':
/usr/include/c++/9/bits/vector.tcc:426:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > > >'} changed in GCC 7.1
/usr/include/c++/9/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<CppAD::AD<double> >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
/usr/include/c++/9/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]':
/usr/include/c++/9/bits/vector.tcc:121:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > > >' changed in GCC 7.1
121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...);
| ^~~~~~~~~~~~~~~~~
g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o glmmTMB.so glmmTMB.o -llapack -lblas -lgfortran -lm -fopenmp -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-glmmtmb/usr/lib/R/site-library/00LOCK-r-cran-glmmtmb-1.0.0/00new/glmmTMB/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (glmmTMB)
W: Ignoring specified R dependency: R (>= 3.2.0)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-cran-pscl for Recommends:pscl
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-lattice for Suggests:lattice
I: Using r-cran-ggplot2 for Suggests:ggplot2 (>= 2.2.1)
I: Using r-cran-mlmrev for Suggests:mlmRev
I: Using r-cran-bbmle for Suggests:bbmle (>= 1.0.19)
I: Using r-cran-coda for Suggests:coda
I: Using r-cran-reshape2 for Suggests:reshape2
I: Using r-cran-car for Suggests:car (>= 3.0.6)
I: Using r-cran-emmeans for Suggests:emmeans (>= 1.4)
I: Using r-cran-estimability for Suggests:estimability
W: Cannot find a debian package for Suggests:DHARMa
I: Using r-cran-multcomp for Suggests:multcomp
W: Cannot find a debian package for Suggests:MuMIn
I: Using r-cran-effects for Suggests:effects (>= 4.0-1)
W: Cannot find a debian package for Suggests:dotwhisker
I: Using r-cran-broom for Suggests:broom
W: Cannot find a debian package for Suggests:broom.mixed
I: Using r-cran-plyr for Suggests:plyr
I: Using r-cran-png for Suggests:png
I: Using r-cran-boot for Suggests:boot
W: Cannot find a debian package for Suggests:texreg
I: Using r-cran-xtable for Suggests:xtable
W: Cannot find a debian package for Suggests:huxtable
I: Using r-cran-tmb for Imports:TMB (>= 1.7.14)
I: Using r-cran-lme4 for Imports:lme4 (>= 1.1-18.9000)
I: Using r-cran-matrix for Imports:Matrix
I: Using r-cran-nlme for Imports:nlme
I: Using r-cran-tmb for LinkingTo:TMB
I: Using r-cran-rcppeigen for LinkingTo:RcppEigen
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-glmmtmb-dbgsym' in '../r-cran-glmmtmb-dbgsym_1.0.0-1_armhf.deb'.
dpkg-deb: building package 'r-cran-glmmtmb' in '../r-cran-glmmtmb_1.0.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-cran-glmmtmb_1.0.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2020-02-16T22:06:03Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-glmmtmb_1.0.0-1_armhf.changes:
-------------------------------------
Format: 1.8
Date: Tue, 11 Feb 2020 11:14:57 +0100
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb r-cran-glmmtmb-dbgsym
Architecture: armhf
Version: 1.0.0-1
Distribution: bullseye-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
r-cran-glmmtmb - Generalized Linear Mixed Models using Template Model Builder
Changes:
r-cran-glmmtmb (1.0.0-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* debhelper-compat 12
* Standards-Version: 4.5.0
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Files:
56b66c7311c9eeed551ab15a061e3bab 11611292 debug optional r-cran-glmmtmb-dbgsym_1.0.0-1_armhf.deb
93f8435953fe0be92f1c54b308aff1c2 8389 gnu-r optional r-cran-glmmtmb_1.0.0-1_armhf.buildinfo
7c54817dcd6bff4e96ab766394aca5de 3377536 gnu-r optional r-cran-glmmtmb_1.0.0-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-glmmtmb-dbgsym_1.0.0-1_armhf.deb
---------------------------------------
new Debian package, version 2.0.
size 11611292 bytes: control archive=536 bytes.
394 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-glmmtmb-dbgsym
Source: r-cran-glmmtmb
Version: 1.0.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 11678
Depends: r-cran-glmmtmb (= 1.0.0-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-glmmtmb
Build-Ids: d61ed92354cea0d34317f46d735c23293670030b
drwxr-xr-x root/root 0 2020-02-11 10:14 ./
drwxr-xr-x root/root 0 2020-02-11 10:14 ./usr/
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lrwxrwxrwx root/root 0 2020-02-11 10:14 ./usr/share/doc/r-cran-glmmtmb-dbgsym -> r-cran-glmmtmb
r-cran-glmmtmb_1.0.0-1_armhf.deb
--------------------------------
new Debian package, version 2.0.
size 3377536 bytes: control archive=3588 bytes.
1324 bytes, 18 lines control
8214 bytes, 96 lines md5sums
Package: r-cran-glmmtmb
Version: 1.0.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 5141
Depends: r-base-core (>= 3.6.2-2), r-api-3.5, r-cran-tmb (>= 1.7.14), r-cran-lme4 (>= 1.1-18.9000), r-cran-matrix, r-cran-nlme, r-cran-rcppeigen, libc6 (>= 2.29), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2)
Recommends: r-cran-testthat, r-cran-pscl
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-mass, r-cran-lattice, r-cran-ggplot2 (>= 2.2.1), r-cran-mlmrev, r-cran-bbmle (>= 1.0.19), r-cran-coda, r-cran-reshape2, r-cran-car (>= 3.0.6), r-cran-emmeans (>= 1.4), r-cran-estimability, r-cran-multcomp, r-cran-effects (>= 4.0-1), r-cran-broom, r-cran-plyr, r-cran-png, r-cran-boot, r-cran-xtable
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=glmmTMB
Description: Generalized Linear Mixed Models using Template Model Builder
Fit linear and generalized linear mixed models with various
extensions, including zero-inflation. The models are fitted using maximum
likelihood estimation via 'TMB' (Template Model Builder). Random effects are
assumed to be Gaussian on the scale of the linear predictor and are integrated
out using the Laplace approximation. Gradients are calculated using automatic
differentiation.
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+------------------------------------------------------------------------------+
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| Cleanup |
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Purging /<<BUILDDIR>>
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 36000
Build-Time: 1432
Distribution: bullseye-staging
Host Architecture: armhf
Install-Time: 1084
Job: r-cran-glmmtmb_1.0.0-1
Machine Architecture: armhf
Package: r-cran-glmmtmb
Package-Time: 2579
Source-Version: 1.0.0-1
Space: 36000
Status: successful
Version: 1.0.0-1
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Finished at 2020-02-16T22:06:03Z
Build needed 00:42:59, 36000k disc space