r-cran-glmmtmb →
0.2.2.0-1 →
armhf → 2018-12-22 14:02:15
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-03
+==============================================================================+
| r-cran-glmmtmb 0.2.2.0-1 (armhf) Sat, 22 Dec 2018 13:23:47 +0000 |
+==============================================================================+
Package: r-cran-glmmtmb
Version: 0.2.2.0-1
Source Version: 0.2.2.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-ede9c924-673d-4563-9171-7a5300040b21' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.3 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [13.0 MB]
Fetched 24.3 MB in 27s (905 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-cran-glmmtmb' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-cran-glmmtmb.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 814 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-cran-glmmtmb 0.2.2.0-1 (dsc) [2148 B]
Get:2 http://172.17.0.1/private buster-staging/main r-cran-glmmtmb 0.2.2.0-1 (tar) [799 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-cran-glmmtmb 0.2.2.0-1 (diff) [12.9 kB]
Fetched 814 kB in 0s (5236 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-nLXlGS/r-cran-glmmtmb-0.2.2.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-cran-glmmtmb-nLXlGS' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-r7iDtG/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-r7iDtG/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-r7iDtG/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ Packages [431 B]
Fetched 2107 B in 1s (3042 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 47 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 14050 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-tmb, r-cran-lme4 (>= 1.1-10), r-cran-matrix, r-cran-nlme, r-cran-rcppeigen
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-tmb, r-cran-lme4 (>= 1.1-10), r-cran-matrix, r-cran-nlme, r-cran-rcppeigen
dpkg-deb: building package 'sbuild-build-depends-r-cran-glmmtmb-dummy' in '/<<BUILDDIR>>/resolver-r7iDtG/apt_archive/sbuild-build-depends-r-cran-glmmtmb-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-cran-glmmtmb-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ Sources [546 B]
Get:5 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ Packages [624 B]
Fetched 2503 B in 1s (3599 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-cran-glmmtmb build dependencies (apt-based resolver)
--------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
libnss-systemd libpam-systemd systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp-8 dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core g++-8 gcc-7-base gcc-8 gcc-8-base
gettext gettext-base gfortran gfortran-8 groff-base icu-devtools
intltool-debian libarchive-zip-perl libasan5 libatomic1 libblas-dev libblas3
libbsd0 libbz2-dev libcairo2 libcc1-0 libcroco3 libcurl4 libdatrie1 libelf1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-8-dev libgcc1 libgfortran-8-dev libgfortran4
libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b libice6
libicu-dev libicu63 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1 libncurses-dev
libncurses5-dev libnghttp2-14 libnlopt0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libstdc++-8-dev
libstdc++6 libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6
libtool libubsan1 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db pkg-config po-debconf r-base-core
r-base-dev r-cran-lattice r-cran-littler r-cran-lme4 r-cran-mass
r-cran-matrix r-cran-minqa r-cran-nlme r-cran-nloptr r-cran-pkgkitten
r-cran-rcpp r-cran-rcppeigen r-cran-tmb ucf unzip x11-common xauth xdg-utils
zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation gcc-8-locales debtags dh-make gcc-8-doc libstdc++6-8-dbg
libgcc1-dbg libgomp1-dbg libitm1-dbg libatomic1-dbg libasan5-dbg
liblsan0-dbg libtsan0-dbg libubsan1-dbg libmpx2-dbg libquadmath0-dbg
gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-8-doc
libgfortran5-dbg libcoarrays-dev groff liblapack-doc icu-doc liblzma-doc
ncurses-doc readline-doc libstdc++-8-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl ess r-doc-info | r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-cran-getopt r-cran-inline r-cran-numderiv
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gcc-7-base gettext gettext-base gfortran
gfortran-8 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl4
libdatrie1 libelf1 libfile-stripnondeterminism-perl libfile-which-perl
libfontconfig1 libfreetype6 libfribidi0 libgfortran-8-dev libgfortran4
libgfortran5 libglib2.0-0 libgraphite2-3 libharfbuzz0b libice6 libicu-dev
libicu63 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1 libncurses-dev
libncurses5-dev libnghttp2-14 libnlopt0 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libswitch-perl
libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool libwebp6 libx11-6
libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 littler m4 man-db
pkg-config po-debconf r-base-core r-base-dev r-cran-lattice r-cran-littler
r-cran-lme4 r-cran-mass r-cran-matrix r-cran-minqa r-cran-nlme r-cran-nloptr
r-cran-pkgkitten r-cran-rcpp r-cran-rcppeigen r-cran-tmb
sbuild-build-depends-r-cran-glmmtmb-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-8 g++-8 gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0 libgcc-8-dev
libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
13 upgraded, 127 newly installed, 0 to remove and 34 not upgraded.
Need to get 113 MB/116 MB of archives.
After this operation, 275 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-r7iDtG/apt_archive ./ sbuild-build-depends-r-cran-glmmtmb-dummy 0.invalid.0 [912 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-12+rpi1 [30.1 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-12+rpi1 [188 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-12+rpi1 [36.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-12+rpi1 [63.9 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-12+rpi1 [8108 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-12+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-12+rpi1 [104 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-12+rpi1 [5942 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-12+rpi1 [1565 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-12+rpi1 [3743 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-12+rpi1 [5848 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-12+rpi1 [5475 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-12+rpi1 [326 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-9 [117 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-2 [185 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-9 [434 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 1.0.0-1 [19.5 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 1.0.0-1 [12.5 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-3 [66.0 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libicu63 armhf 63.1-5 [7976 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7+b1 [570 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-9 [1219 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.21 [248 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.4 [1003 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.26 [20.0 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.26 [17.5 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-12+rpi1 [205 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-2 [103 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libfreetype6 armhf 2.9.1-3 [318 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libpixman-1-0 armhf 0.36.0-1 [458 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-2 [132 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-2 [108 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-2 [99.3 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-1 [600 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.35.1-1 [70.8 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.62.0-1 [286 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-2 [1493 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-5 [168 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 2.1.1-1+rpi1 [1013 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-5 [61.7 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-5 [51.6 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.9+dfsg-1 [878 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.10-3 [235 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.9-1 [666 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.1-2 [23.6 MB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-12+rpi1 [248 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-12+rpi1 [5812 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
Get:88 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-2 [113 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-2 [1551 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-1 [278 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20181013-1 [940 B]
Get:92 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:97 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:100 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 63.1-5 [166 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 63.1-5 [8845 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:104 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.1-2 [4484 B]
Get:105 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.22-1 [14.6 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf dh-r all 20181206 [34.9 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libnlopt0 armhf 2.4.2+dfsg-8+b1 [133 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf r-cran-littler armhf 0.3.5-1+b1 [301 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf littler all 0.3.5-1 [13.4 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf r-cran-lattice armhf 0.20-38-1 [1120 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf r-cran-matrix armhf 1.2-15-1 [3356 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf r-cran-mass armhf 7.3-51.1-1 [1103 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf r-cran-nlme armhf 3.1.137-1+b1 [2202 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf r-cran-pkgkitten all 0.1.4-2 [22.4 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf r-cran-rcpp armhf 1.0.0-1+b1 [3356 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf r-cran-minqa armhf 1.2.4-1+b1 [101 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf r-cran-nloptr armhf 1.2.1-1 [279 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf r-cran-rcppeigen armhf 0.3.3.5.0-1 [1333 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf r-cran-lme4 armhf 1.1-19-1 [4906 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf r-cran-tmb armhf 1.7.15-1 [823 kB]
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Setting up cpp-8 (8.2.0-12+rpi1) ...
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Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libarchive-zip-perl (1.64-1) ...
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Setting up libsigsegv2:armhf (2.12-2) ...
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Setting up libpsl5:armhf (0.20.2-2) ...
Setting up libelf1:armhf (0.170-0.5) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.58.1-2) ...
No schema files found: removed existing output file.
Setting up unzip (6.0-21) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libdatrie1:armhf (0.2.12-1) ...
Setting up gettext-base (0.19.8.1-9) ...
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
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Setting up m4 (1.4.18-2) ...
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Setting up ucf (3.0038) ...
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Setting up gcc-7-base:armhf (7.3.0-19) ...
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Setting up libpixman-1-0:armhf (0.36.0-1) ...
Setting up libssh2-1:armhf (1.8.0-2) ...
Processing triggers for libc-bin (2.28-2) ...
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Setting up autotools-dev (20180224.1) ...
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Setting up libfribidi0:armhf (1.0.5-3) ...
Setting up libpcrecpp0v5:armhf (2:8.39-11+rpi1) ...
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Setting up icu-devtools (63.1-5) ...
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Setting up libtcl8.6:armhf (8.6.9+dfsg-1) ...
Setting up libthai-data (0.1.28-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Setting up liblzma-dev:armhf (5.2.2-1.3) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up xdg-utils (1.1.3-1) ...
Setting up libnlopt0:armhf (2.4.2+dfsg-8+b1) ...
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Setting up libasan5:armhf (8.2.0-12+rpi1) ...
Setting up libgfortran5:armhf (8.2.0-12+rpi1) ...
Setting up libx11-data (2:1.6.7-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up autopoint (0.19.8.1-9) ...
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Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (1.0.0-1) ...
Setting up libubsan1:armhf (8.2.0-12+rpi1) ...
Setting up libpaper1:armhf (1.1.26) ...
Creating config file /etc/papersize with new version
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Setting up libpcre3-dev:armhf (2:8.39-11+rpi1) ...
Setting up fontconfig-config (2.13.1-2) ...
Installing new version of config file /etc/fonts/fonts.conf ...
Setting up libgfortran4:armhf (7.3.0-19) ...
Setting up gettext (0.19.8.1-9) ...
Setting up libcurl4:armhf (7.62.0-1) ...
Setting up libharfbuzz0b:armhf (2.1.1-1+rpi1) ...
Setting up libtiff5:armhf (4.0.10-3) ...
Setting up autoconf (2.69-11) ...
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Setting up libicu-dev (63.1-5) ...
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Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libblas3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libreadline-dev:armhf (7.0-5) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up man-db (2.8.4-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libgcc-8-dev:armhf (8.2.0-12+rpi1) ...
Setting up libpng-dev:armhf (1.6.34-2+rpi1) ...
Setting up libgfortran-8-dev:armhf (8.2.0-12+rpi1) ...
Setting up libxcb1:armhf (1.13.1-2) ...
Setting up libtool (2.4.6-6) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up libstdc++-8-dev:armhf (8.2.0-12+rpi1) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libxcb-render0:armhf (1.13.1-2) ...
Setting up po-debconf (1.0.21) ...
Setting up libblas-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up liblapack3:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libx11-6:armhf (2:1.6.7-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up gcc-8 (8.2.0-12+rpi1) ...
Setting up g++-8 (8.2.0-12+rpi1) ...
Setting up libxcb-shm0:armhf (1.13.1-2) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up liblapack-dev:armhf (3.8.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up gfortran-8 (8.2.0-12+rpi1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libpango-1.0-0:armhf (1.42.4-5) ...
Setting up gfortran (4:8.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-1) ...
Setting up libtk8.6:armhf (8.6.9-1) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-5) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-5) ...
Setting up r-base-core (3.5.1-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-littler (0.3.5-1+b1) ...
Setting up littler (0.3.5-1) ...
Setting up r-base-dev (3.5.1-2) ...
Setting up r-cran-nloptr (1.2.1-1) ...
Setting up r-cran-pkgkitten (0.1.4-2) ...
Setting up r-cran-rcpp (1.0.0-1+b1) ...
Setting up r-cran-mass (7.3-51.1-1) ...
Setting up r-cran-lattice (0.20-38-1) ...
Setting up r-cran-nlme (3.1.137-1+b1) ...
Setting up r-cran-minqa (1.2.4-1+b1) ...
Setting up r-cran-matrix (1.2-15-1) ...
Setting up r-cran-rcppeigen (0.3.3.5.0-1) ...
Setting up r-cran-tmb (1.7.15-1) ...
Setting up r-cran-lme4 (1.1-19-1) ...
Setting up dh-autoreconf (19) ...
Setting up dh-strip-nondeterminism (1.0.0-1) ...
Setting up debhelper (11.5.4) ...
Setting up dh-r (20181206) ...
Setting up sbuild-build-depends-r-cran-glmmtmb-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.28-2) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.2-armmp armhf (armv7l)
Toolchain package versions: binutils_2.31.1-10+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-12+rpi1 gcc-8_8.2.0-12+rpi1 libc6-dev_2.28-2 libstdc++-8-dev_8.2.0-12+rpi1 libstdc++6_8.2.0-12+rpi1 linux-libc-dev_4.18.20-2+rpi1
Package versions: adduser_3.118 apt_1.8.0~alpha2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-10+rpi1 binutils-arm-linux-gnueabihf_2.31.1-10+rpi1 binutils-common_2.31.1-10+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.33-0.2 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-12+rpi1 dash_0.5.10.2-2 dbus_1.12.12-1 dbus-user-session_1.12.12-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_11.5.4 debianutils_4.8.6 dh-autoreconf_19 dh-r_20181206 dh-strip-nondeterminism_1.0.0-1 diffutils_1:3.6-1 dirmngr_2.2.11-1 dmsetup_2:1.02.145-4.1+b5 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-3 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.33-0.2 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-12+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-6-base_6.5.0-1+rpi1 gcc-7-base_7.3.0-19 gcc-8_8.2.0-12+rpi1 gcc-8-base_8.2.0-12+rpi1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gfortran_4:8.2.0-2+rpi1 gfortran-8_8.2.0-12+rpi1 gnupg_2.2.11-1 gnupg-l10n_2.2.11-1 gnupg-utils_2.2.11-1 gpg_2.2.11-1 gpg-agent_2.2.11-1 gpg-wks-client_2.2.11-1 gpg-wks-server_2.2.11-1 gpgconf_2.2.11-1 gpgsm_2.2.11-1 gpgv_2.2.11-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hostname_3.21 icu-devtools_63.1-5 inetutils-ping_2:1.9.4-5 init-system-helpers_1.56 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-2 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libapparmor1_2.13.1-3+b1 libapt-pkg5.0_1.8.0~alpha2 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-12+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-12+rpi1 libattr1_1:2.4.47-2 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libncurses-dev_6.1+20181013-1 libncurses5_6.1+20181013-1 libncurses5-dev_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4.1~rc1-1 libnghttp2-14_1.35.1-1 libnlopt0_2.4.2+dfsg-8+b1 libnpth0_1.6-1 libnss-systemd_239-15+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-15+rpi1 libpam0g_1.1.8-3.8 libpango-1.0-0_1.42.4-5 libpangocairo-1.0-0_1.42.4-5 libpangoft2-1.0-0_1.42.4-5 libpaper-utils_1.1.26 libpaper1_1.1.26 libpcre16-3_2:8.39-11+rpi1 libpcre3_2:8.39-11+rpi1 libpcre3-dev_2:8.39-11+rpi1 libpcre32-3_2:8.39-11+rpi1 libpcrecpp0v5_2:8.39-11+rpi1 libperl5.28_5.28.1-3 libpipeline1_1.5.0-2 libpixman-1-0_0.36.0-1 libplymouth4_0.9.4-1 libpng-dev_1.6.34-2+rpi1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 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login_1:4.5-1.1 lsb-base_10.2018112800+rpi1 m4_1.4.18-2 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mount_2.33-0.2 multiarch-support_2.28-2 nano_3.2-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.5 openssl_1.1.1a-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-3 perl-base_5.28.1-3 perl-modules-5.28_5.28.1-3 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.4-1 po-debconf_1.0.21 procps_2:3.3.15-2 r-base-core_3.5.1-2 r-base-dev_3.5.1-2 r-cran-lattice_0.20-38-1 r-cran-littler_0.3.5-1+b1 r-cran-lme4_1.1-19-1 r-cran-mass_7.3-51.1-1 r-cran-matrix_1.2-15-1 r-cran-minqa_1.2.4-1+b1 r-cran-nlme_3.1.137-1+b1 r-cran-nloptr_1.2.1-1 r-cran-pkgkitten_0.1.4-2 r-cran-rcpp_1.0.0-1+b1 r-cran-rcppeigen_0.3.3.5.0-1 r-cran-tmb_1.7.15-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-cran-glmmtmb-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-15+rpi1 systemd-sysv_239-15+rpi1 sysvinit-utils_2.93-1 tar_1.30+dfsg-3+rpi1 tzdata_2018g-1 ucf_3.0038 udev_239-15+rpi1 unzip_6.0-21 util-linux_2.33-0.2 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Sep 9 20:53:18 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-cran-glmmtmb_0.2.2.0-1.dsc
dpkg-source: info: extracting r-cran-glmmtmb in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-cran-glmmtmb_0.2.2.0.orig.tar.gz
dpkg-source: info: unpacking r-cran-glmmtmb_0.2.2.0-1.debian.tar.xz
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-ede9c924-673d-4563-9171-7a5300040b21
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-cran-glmmtmb
dpkg-buildpackage: info: source version 0.2.2.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: glmmTMB Version: 0.2.2.0
I: Building using R version 3.5.1-2
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Sun, 09 Sep 2018 22:47:27 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-cran-glmmtmb/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-cran-glmmtmb/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 09 Sep 2018 22:47:27 +0200'"
* installing *source* package 'glmmTMB' ...
** package 'glmmTMB' successfully unpacked and MD5 sums checked
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/TMB/include" -I"/usr/lib/R/site-library/RcppEigen/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-eYsds1/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c glmmTMB.cpp -o glmmTMB.o
In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:368,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:53,
from glmmTMB.cpp:1:
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In member function 'void report_stack<Type>::push(Vector_Matrix_Or_Array, const char*) [with Vector_Matrix_Or_Array = tmbutils::vector<CppAD::AD<double> >; Type = CppAD::AD<double>]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:17: warning: iteration 536870912 invokes undefined behavior [-Waggressive-loop-optimizations]
while(size) ptr[--size].~T();
^~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:5: note: within this loop
while(size) ptr[--size].~T();
^~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In member function 'void report_stack<Type>::push(Vector_Matrix_Or_Array, const char*) [with Vector_Matrix_Or_Array = tmbutils::vector<double>; Type = double]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:17: warning: iteration 536870912 invokes undefined behavior [-Waggressive-loop-optimizations]
while(size) ptr[--size].~T();
^~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:5: note: within this loop
while(size) ptr[--size].~T();
^~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In member function 'void report_stack<Type>::push(Vector_Matrix_Or_Array, const char*) [with Vector_Matrix_Or_Array = tmbutils::vector<CppAD::AD<CppAD::AD<double> > >; Type = CppAD::AD<CppAD::AD<double> >]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:17: warning: iteration 536870912 invokes undefined behavior [-Waggressive-loop-optimizations]
while(size) ptr[--size].~T();
^~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:5: note: within this loop
while(size) ptr[--size].~T();
^~~~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h: In member function 'void report_stack<Type>::push(Vector_Matrix_Or_Array, const char*) [with Vector_Matrix_Or_Array = tmbutils::vector<CppAD::AD<CppAD::AD<CppAD::AD<double> > > >; Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]':
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:17: warning: iteration 536870912 invokes undefined behavior [-Waggressive-loop-optimizations]
while(size) ptr[--size].~T();
^~~
/usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/Memory.h:259:5: note: within this loop
while(size) ptr[--size].~T();
^~~~~
In file included from /usr/include/c++/8/vector:69,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:15,
from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26,
from /usr/lib/R/site-library/TMB/include/TMB.hpp:54,
from glmmTMB.cpp:1:
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<double>, int>}; _Tp = Eigen::Triplet<CppAD::AD<double>, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<double>, int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<double>, int>, std::allocator<Eigen::Triplet<CppAD::AD<double>, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<double>, int>*, std::vector<Eigen::Triplet<CppAD::AD<double>, int>, std::allocator<Eigen::Triplet<CppAD::AD<double>, int> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<double, int>}; _Tp = Eigen::Triplet<double, int>; _Alloc = std::allocator<Eigen::Triplet<double, int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<double>]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<double>, int>*, std::vector<Eigen::Triplet<CppAD::AD<double>, int>, std::allocator<Eigen::Triplet<CppAD::AD<double>, int> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = double]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<double, int>*, std::vector<Eigen::Triplet<double, int>, std::allocator<Eigen::Triplet<double, int> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>}; _Tp = Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> > > >'} changed in GCC 7.1
vector<_Tp, _Alloc>::
^~~~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In member function 'void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>}; _Tp = Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>; _Alloc = std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> >]':
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc:413:7: note: parameter passing for argument of type 'std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > >::iterator' {aka '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > > >'} changed in GCC 7.1
/usr/include/c++/8/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<CppAD::AD<double> >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<double> >, int> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
/usr/include/c++/8/bits/vector.tcc: In function 'Eigen::SparseMatrix<Scalar> tmbutils::asSparseMatrix(SEXP) [with Type = CppAD::AD<CppAD::AD<CppAD::AD<double> > >]':
/usr/include/c++/8/bits/vector.tcc:109:4: note: parameter passing for argument of type '__gnu_cxx::__normal_iterator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>*, std::vector<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int>, std::allocator<Eigen::Triplet<CppAD::AD<CppAD::AD<CppAD::AD<double> > >, int> > > >' changed in GCC 7.1
_M_realloc_insert(end(), std::forward<_Args>(__args)...);
^~~~~~~~~~~~~~~~~
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o glmmTMB.so glmmTMB.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-cran-glmmtmb/usr/lib/R/site-library/glmmTMB/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (glmmTMB)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296.
W: Ignoring specified R dependency: R (>= 3.2.0)
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-cran-testthat for Suggests:testthat
I: Using r-cran-mass for Suggests:MASS
I: Using r-cran-lattice for Suggests:lattice
I: Using r-cran-ggplot2 for Suggests:ggplot2
I: Using r-cran-mlmrev for Suggests:mlmRev
I: Using r-cran-bbmle for Suggests:bbmle (>= 1.0.19)
I: Using r-cran-pscl for Suggests:pscl
I: Using r-cran-mcmcpack for Suggests:MCMCpack
I: Using r-cran-coda for Suggests:coda
I: Using r-cran-reshape2 for Suggests:reshape2
I: Using r-cran-plyr for Suggests:plyr
I: Using r-cran-tmb for Imports:TMB (>= 1.7.13)
I: Using r-cran-lme4 for Imports:lme4 (>= 1.1-10)
I: Using r-cran-matrix for Imports:Matrix
I: Using r-cran-nlme for Imports:nlme
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
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dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
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dh_installgsettings -a -O--buildsystem=R
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dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_gconf: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal.
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
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dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-cran-glmmtmb-dbgsym' in '../r-cran-glmmtmb-dbgsym_0.2.2.0-1_armhf.deb'.
dpkg-deb: building package 'r-cran-glmmtmb' in '../r-cran-glmmtmb_0.2.2.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-cran-glmmtmb_0.2.2.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-12-22T14:02:07Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-cran-glmmtmb_0.2.2.0-1_armhf.changes:
---------------------------------------
Format: 1.8
Date: Sun, 09 Sep 2018 22:47:27 +0200
Source: r-cran-glmmtmb
Binary: r-cran-glmmtmb
Architecture: armhf
Version: 0.2.2.0-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-cran-glmmtmb - Generalized Linear Mixed Models using Template Model Builder
Changes:
r-cran-glmmtmb (0.2.2.0-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.2.1
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Files:
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f81edd7b07f768cfd74f3f57ae6e693c 7950 gnu-r optional r-cran-glmmtmb_0.2.2.0-1_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-cran-glmmtmb-dbgsym_0.2.2.0-1_armhf.deb
-----------------------------------------
new Debian package, version 2.0.
size 10891472 bytes: control archive=540 bytes.
398 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-cran-glmmtmb-dbgsym
Source: r-cran-glmmtmb
Version: 0.2.2.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 10966
Depends: r-cran-glmmtmb (= 0.2.2.0-1)
Section: debug
Priority: optional
Description: debug symbols for r-cran-glmmtmb
Build-Ids: d3d614cc7f1e6978932ced402c356739f74b725f
drwxr-xr-x root/root 0 2018-09-09 20:47 ./
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lrwxrwxrwx root/root 0 2018-09-09 20:47 ./usr/share/doc/r-cran-glmmtmb-dbgsym -> r-cran-glmmtmb
r-cran-glmmtmb_0.2.2.0-1_armhf.deb
----------------------------------
new Debian package, version 2.0.
size 1296368 bytes: control archive=2828 bytes.
1112 bytes, 17 lines control
5947 bytes, 71 lines md5sums
Package: r-cran-glmmtmb
Version: 0.2.2.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 2490
Depends: r-base-core (>= 3.5.1-2), r-api-3.5, r-cran-tmb (>= 1.7.13), r-cran-lme4 (>= 1.1-10), r-cran-matrix, r-cran-nlme, libc6 (>= 2.23), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2)
Suggests: r-cran-knitr, r-cran-rmarkdown, r-cran-testthat, r-cran-mass, r-cran-lattice, r-cran-ggplot2, r-cran-mlmrev, r-cran-bbmle (>= 1.0.19), r-cran-pscl, r-cran-mcmcpack, r-cran-coda, r-cran-reshape2, r-cran-plyr
Section: gnu-r
Priority: optional
Homepage: https://cran.r-project.org/package=glmmTMB
Description: Generalized Linear Mixed Models using Template Model Builder
Fit linear and generalized linear mixed models with various
extensions, including zero-inflation. The models are fitted using maximum
likelihood estimation via 'TMB' (Template Model Builder). Random effects are
assumed to be Gaussian on the scale of the linear predictor and are integrated
out using the Laplace approximation. Gradients are calculated using automatic
differentiation.
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Purging /<<BUILDDIR>>
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| Summary |
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Build Architecture: armhf
Build-Space: 27072
Build-Time: 1264
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 987
Job: r-cran-glmmtmb_0.2.2.0-1
Machine Architecture: armhf
Package: r-cran-glmmtmb
Package-Time: 2300
Source-Version: 0.2.2.0-1
Space: 27072
Status: successful
Version: 0.2.2.0-1
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Finished at 2018-12-22T14:02:07Z
Build needed 00:38:20, 27072k disc space