r-bioc-xvector →
0.2.0-2 →
armhf → 2014-01-22 17:45:09
sbuild (Debian sbuild) 0.63.2 (18 Aug 2012) on testbuildd.raspbian.org
╔══════════════════════════════════════════════════════════════════════════════╗
║ r-bioc-xvector 0.2.0-2 (armhf) 22 Jan 2014 17:35 ║
╚══════════════════════════════════════════════════════════════════════════════╝
Package: r-bioc-xvector
Version: 0.2.0-2
Source Version: 0.2.0-2
Distribution: jessie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'build/r-bioc-xvector-8NlcTs/r-bioc-xvector-0.2.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-bioc-xvector-8NlcTs' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/jessie-staging-armhf-sbuild-379dd673-d46e-45e2-9ea7-18ce61dcfd1a' with '«CHROOT»'
┌──────────────────────────────────────────────────────────────────────────────┐
│ Update chroot │
└──────────────────────────────────────────────────────────────────────────────┘
Get:1 http://172.17.0.1 jessie-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 jessie-staging/main Sources [7202 kB]
Get:3 http://172.17.0.1 jessie-staging/main armhf Packages [8322 kB]
Ign http://172.17.0.1 jessie-staging/main Translation-en
Fetched 15.5 MB in 38s (400 kB/s)
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Fetch source files │
└──────────────────────────────────────────────────────────────────────────────┘
Check APT
─────────
Checking available source versions...
Download source files with APT
──────────────────────────────
Reading package lists...
Building dependency tree...
Reading state information...
NOTICE: 'r-bioc-xvector' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-xvector/trunk/
Need to get 56.8 kB of source archives.
Get:1 http://172.17.0.1/private/ jessie-staging/main r-bioc-xvector 0.2.0-2 (dsc) [1497 B]
Get:2 http://172.17.0.1/private/ jessie-staging/main r-bioc-xvector 0.2.0-2 (tar) [51.8 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main r-bioc-xvector 0.2.0-2 (diff) [3491 B]
Fetched 56.8 kB in 0s (193 kB/s)
Download complete and in download only mode
Check arch
──────────
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-8bT5fM/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded.
Need to get 0 B/758 B of archives.
After this operation, 0 B of additional disk space will be used.
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12149 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev | libc-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-biocgenerics (>= 0.7.2), r-bioc-iranges (>= 1.19.36)
Filtered Build-Depends: base-files, base-passwd, bash, bsdutils, coreutils, dash, debianutils, diffutils, dpkg, e2fsprogs, findutils, grep, gzip, hostname, libc-bin, login, mount, ncurses-base, ncurses-bin, perl-base, sed, sysvinit, sysvinit-utils, tar, util-linux, libc6-dev, gcc (>= 4:4.4.3), g++ (>= 4:4.4.3), make, dpkg-dev (>= 1.13.5), debhelper (>= 9), cdbs, r-base-dev, r-bioc-biocgenerics (>= 0.7.2), r-bioc-iranges (>= 1.19.36)
dpkg-deb: building package `sbuild-build-depends-r-bioc-xvector-dummy' in `/«BUILDDIR»/resolver-JubWgE/apt_archive/sbuild-build-depends-r-bioc-xvector-dummy.deb'.
OK
Reading package lists...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-xvector build dependencies (apt-based resolver) │
└──────────────────────────────────────────────────────────────────────────────┘
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
bsdmainutils cdbs debhelper file fontconfig fontconfig-config
fonts-dejavu-core gettext gettext-base gfortran gfortran-4.8 groff-base
intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
libcroco3 libdatrie1 libdrm2 libexpat1 libffi6 libfontconfig1 libfreetype6
libgfortran-4.8-dev libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0
libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg8 libjpeg8-dev
liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3-dev
libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
libtinfo-dev libunistring0 libx11-6 libx11-data libx11-xcb1 libxau6
libxcb-dri2-0 libxcb-glx0 libxcb-render0 libxcb-shm0 libxcb1 libxdamage1
libxdmcp6 libxext6 libxfixes3 libxft2 libxml2 libxrender1 libxss1 libxt6
libxxf86vm1 man-db po-debconf r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-iranges tcl8.5 tk8.5 ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
wamerican wordlist whois vacation devscripts dh-make gettext-doc
gfortran-doc gfortran-4.8-doc libgfortran3-dbg groff ncurses-doc ttf-baekmuk
ttf-arphic-gbsn00lp ttf-arphic-bsmi00lp ttf-arphic-gkai00mp
ttf-arphic-bkai00mp less www-browser libmail-box-perl r-doc-info r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
texi2html tcl-tclreadline gvfs-bin
Recommended packages:
autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
libgl1-mesa-dri libglib2.0-data shared-mime-info xml-core
libmail-sendmail-perl r-recommended r-doc-html xterm x-terminal-emulator
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
bsdmainutils cdbs debhelper file fontconfig fontconfig-config
fonts-dejavu-core gettext gettext-base gfortran gfortran-4.8 groff-base
intltool-debian libasprintf0c2 libblas-dev libblas3 libbz2-dev libcairo2
libcroco3 libdatrie1 libdrm2 libexpat1 libffi6 libfontconfig1 libfreetype6
libgfortran-4.8-dev libgfortran3 libgl1-mesa-glx libglapi-mesa libglib2.0-0
libgraphite2-3 libharfbuzz0b libice6 libjbig0 libjpeg8 libjpeg8-dev
liblapack-dev liblapack3 libmagic1 libncurses5-dev libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre3-dev
libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-0 libpng12-dev
libreadline-dev libreadline6-dev libsm6 libthai-data libthai0 libtiff5
libtinfo-dev libunistring0 libx11-6 libx11-data libx11-xcb1 libxau6
libxcb-dri2-0 libxcb-glx0 libxcb-render0 libxcb-shm0 libxcb1 libxdamage1
libxdmcp6 libxext6 libxfixes3 libxft2 libxml2 libxrender1 libxss1 libxt6
libxxf86vm1 man-db po-debconf r-base-core r-base-dev r-bioc-biocgenerics
r-bioc-iranges sbuild-build-depends-r-bioc-xvector-dummy tcl8.5 tk8.5 ucf
unzip x11-common xdg-utils zip zlib1g-dev
0 upgraded, 93 newly installed, 0 to remove and 0 not upgraded.
Need to get 55.8 MB/55.8 MB of archives.
After this operation, 112 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ jessie-staging/main libpipeline1 armhf 1.2.6-1 [24.4 kB]
Get:2 http://172.17.0.1/private/ jessie-staging/main groff-base armhf 1.22.2-4 [958 kB]
Get:3 http://172.17.0.1/private/ jessie-staging/main bsdmainutils armhf 9.0.5 [206 kB]
Get:4 http://172.17.0.1/private/ jessie-staging/main man-db armhf 2.6.5-3 [943 kB]
Get:5 http://172.17.0.1/private/ jessie-staging/main libasprintf0c2 armhf 0.18.3.1-2 [29.5 kB]
Get:6 http://172.17.0.1/private/ jessie-staging/main libmagic1 armhf 1:5.14-2 [213 kB]
Get:7 http://172.17.0.1/private/ jessie-staging/main libxml2 armhf 2.9.1+dfsg1-3 [836 kB]
Get:8 http://172.17.0.1/private/ jessie-staging/main libexpat1 armhf 2.1.0-4 [117 kB]
Get:9 http://172.17.0.1/private/ jessie-staging/main libpng12-0 armhf 1.2.49-5 [179 kB]
Get:10 http://172.17.0.1/private/ jessie-staging/main libfreetype6 armhf 2.5.2-1 [397 kB]
Get:11 http://172.17.0.1/private/ jessie-staging/main ucf all 3.0027+nmu1 [70.6 kB]
Get:12 http://172.17.0.1/private/ jessie-staging/main fonts-dejavu-core all 2.34-1 [1047 kB]
Get:13 http://172.17.0.1/private/ jessie-staging/main fontconfig-config all 2.11.0-2 [270 kB]
Get:14 http://172.17.0.1/private/ jessie-staging/main libfontconfig1 armhf 2.11.0-2 [329 kB]
Get:15 http://172.17.0.1/private/ jessie-staging/main libdrm2 armhf 2.4.50-1 [474 kB]
Get:16 http://172.17.0.1/private/ jessie-staging/main libglapi-mesa armhf 9.2.2-1 [63.2 kB]
Get:17 http://172.17.0.1/private/ jessie-staging/main libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:18 http://172.17.0.1/private/ jessie-staging/main libxdmcp6 armhf 1:1.1.1-1 [24.6 kB]
Get:19 http://172.17.0.1/private/ jessie-staging/main libxcb1 armhf 1.10-2 [36.9 kB]
Get:20 http://172.17.0.1/private/ jessie-staging/main libx11-data all 2:1.6.2-1 [125 kB]
Get:21 http://172.17.0.1/private/ jessie-staging/main libx11-6 armhf 2:1.6.2-1 [867 kB]
Get:22 http://172.17.0.1/private/ jessie-staging/main libx11-xcb1 armhf 2:1.6.2-1 [163 kB]
Get:23 http://172.17.0.1/private/ jessie-staging/main libxcb-dri2-0 armhf 1.10-2 [11.8 kB]
Get:24 http://172.17.0.1/private/ jessie-staging/main libxcb-glx0 armhf 1.10-2 [23.2 kB]
Get:25 http://172.17.0.1/private/ jessie-staging/main libxfixes3 armhf 1:5.0.1-1 [21.0 kB]
Get:26 http://172.17.0.1/private/ jessie-staging/main libxdamage1 armhf 1:1.1.4-1 [14.6 kB]
Get:27 http://172.17.0.1/private/ jessie-staging/main libxext6 armhf 2:1.3.2-1 [51.1 kB]
Get:28 http://172.17.0.1/private/ jessie-staging/main libxxf86vm1 armhf 1:1.1.3-1 [20.0 kB]
Get:29 http://172.17.0.1/private/ jessie-staging/main libgl1-mesa-glx armhf 9.2.2-1 [128 kB]
Get:30 http://172.17.0.1/private/ jessie-staging/main libpixman-1-0 armhf 0.32.4-1 [476 kB]
Get:31 http://172.17.0.1/private/ jessie-staging/main libxcb-render0 armhf 1.10-2 [15.7 kB]
Get:32 http://172.17.0.1/private/ jessie-staging/main libxcb-shm0 armhf 1.10-2 [10.8 kB]
Get:33 http://172.17.0.1/private/ jessie-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:34 http://172.17.0.1/private/ jessie-staging/main libcairo2 armhf 1.12.16-2+rpi1 [894 kB]
Get:35 http://172.17.0.1/private/ jessie-staging/main libffi6 armhf 3.0.13-11 [17.4 kB]
Get:36 http://172.17.0.1/private/ jessie-staging/main libglib2.0-0 armhf 2.36.4-1 [1907 kB]
Get:37 http://172.17.0.1/private/ jessie-staging/main libcroco3 armhf 0.6.8-2 [119 kB]
Get:38 http://172.17.0.1/private/ jessie-staging/main libdatrie1 armhf 0.2.8-1 [29.1 kB]
Get:39 http://172.17.0.1/private/ jessie-staging/main libgfortran3 armhf 4.8.2-14 [153 kB]
Get:40 http://172.17.0.1/private/ jessie-staging/main libgraphite2-3 armhf 1.2.4-1 [57.9 kB]
Get:41 http://172.17.0.1/private/ jessie-staging/main libharfbuzz0b armhf 0.9.25-1 [452 kB]
Get:42 http://172.17.0.1/private/ jessie-staging/main x11-common all 1:7.7+5 [282 kB]
Get:43 http://172.17.0.1/private/ jessie-staging/main libice6 armhf 2:1.0.8-2 [56.2 kB]
Get:44 http://172.17.0.1/private/ jessie-staging/main libjpeg8 armhf 8d-2 [133 kB]
Get:45 http://172.17.0.1/private/ jessie-staging/main libthai-data all 0.1.20-3 [157 kB]
Get:46 http://172.17.0.1/private/ jessie-staging/main libthai0 armhf 0.1.20-3 [41.6 kB]
Get:47 http://172.17.0.1/private/ jessie-staging/main fontconfig armhf 2.11.0-2 [407 kB]
Get:48 http://172.17.0.1/private/ jessie-staging/main libpango-1.0-0 armhf 1.36.0-1+b1 [257 kB]
Get:49 http://172.17.0.1/private/ jessie-staging/main libpangoft2-1.0-0 armhf 1.36.0-1+b1 [192 kB]
Get:50 http://172.17.0.1/private/ jessie-staging/main libpangocairo-1.0-0 armhf 1.36.0-1+b1 [181 kB]
Get:51 http://172.17.0.1/private/ jessie-staging/main libpaper1 armhf 1.1.24+nmu2 [20.9 kB]
Get:52 http://172.17.0.1/private/ jessie-staging/main libpcrecpp0 armhf 1:8.31-2 [125 kB]
Get:53 http://172.17.0.1/private/ jessie-staging/main libsm6 armhf 2:1.2.1-2 [32.5 kB]
Get:54 http://172.17.0.1/private/ jessie-staging/main libjbig0 armhf 2.0-2 [31.5 kB]
Get:55 http://172.17.0.1/private/ jessie-staging/main libtiff5 armhf 4.0.3-7 [229 kB]
Get:56 http://172.17.0.1/private/ jessie-staging/main libunistring0 armhf 0.9.3-5 [408 kB]
Get:57 http://172.17.0.1/private/ jessie-staging/main libxft2 armhf 2.3.1-1 [55.4 kB]
Get:58 http://172.17.0.1/private/ jessie-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:59 http://172.17.0.1/private/ jessie-staging/main libxt6 armhf 1:1.1.4-1 [183 kB]
Get:60 http://172.17.0.1/private/ jessie-staging/main file armhf 1:5.14-2 [53.8 kB]
Get:61 http://172.17.0.1/private/ jessie-staging/main gettext-base armhf 0.18.3.1-2 [135 kB]
Get:62 http://172.17.0.1/private/ jessie-staging/main cdbs all 0.4.122 [81.4 kB]
Get:63 http://172.17.0.1/private/ jessie-staging/main gettext armhf 0.18.3.1-2 [1829 kB]
Get:64 http://172.17.0.1/private/ jessie-staging/main intltool-debian all 0.35.0+20060710.1 [29.8 kB]
Get:65 http://172.17.0.1/private/ jessie-staging/main po-debconf all 1.0.16+nmu2 [223 kB]
Get:66 http://172.17.0.1/private/ jessie-staging/main debhelper all 9.20131227 [687 kB]
Get:67 http://172.17.0.1/private/ jessie-staging/main libgfortran-4.8-dev armhf 4.8.2-14 [181 kB]
Get:68 http://172.17.0.1/private/ jessie-staging/main gfortran-4.8 armhf 4.8.2-14 [4090 kB]
Get:69 http://172.17.0.1/private/ jessie-staging/main gfortran armhf 4:4.8.2-1 [1138 B]
Get:70 http://172.17.0.1/private/ jessie-staging/main libblas3 armhf 1.2.20110419-7 [186 kB]
Get:71 http://172.17.0.1/private/ jessie-staging/main libblas-dev armhf 1.2.20110419-7 [201 kB]
Get:72 http://172.17.0.1/private/ jessie-staging/main libbz2-dev armhf 1.0.6-5 [33.8 kB]
Get:73 http://172.17.0.1/private/ jessie-staging/main libjpeg8-dev armhf 8d-2 [238 kB]
Get:74 http://172.17.0.1/private/ jessie-staging/main liblapack3 armhf 3.5.0-2 [2416 kB]
Get:75 http://172.17.0.1/private/ jessie-staging/main liblapack-dev armhf 3.5.0-2 [2716 kB]
Get:76 http://172.17.0.1/private/ jessie-staging/main libtinfo-dev armhf 5.9+20130608-1 [92.5 kB]
Get:77 http://172.17.0.1/private/ jessie-staging/main libncurses5-dev armhf 5.9+20130608-1 [201 kB]
Get:78 http://172.17.0.1/private/ jessie-staging/main libpaper-utils armhf 1.1.24+nmu2 [17.9 kB]
Get:79 http://172.17.0.1/private/ jessie-staging/main libpcre3-dev armhf 1:8.31-2 [350 kB]
Get:80 http://172.17.0.1/private/ jessie-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-1 [212 kB]
Get:81 http://172.17.0.1/private/ jessie-staging/main libpng12-dev armhf 1.2.49-5 [258 kB]
Get:82 http://172.17.0.1/private/ jessie-staging/main libreadline6-dev armhf 6.2+dfsg-0.1 [164 kB]
Get:83 http://172.17.0.1/private/ jessie-staging/main libreadline-dev armhf 6.2+dfsg-0.1 [898 B]
Get:84 http://172.17.0.1/private/ jessie-staging/main zip armhf 3.0-8 [326 kB]
Get:85 http://172.17.0.1/private/ jessie-staging/main unzip armhf 6.0-10 [192 kB]
Get:86 http://172.17.0.1/private/ jessie-staging/main xdg-utils all 1.1.0~rc1+git20111210-7 [83.7 kB]
Get:87 http://172.17.0.1/private/ jessie-staging/main tcl8.5 armhf 8.5.14-2 [1579 kB]
Get:88 http://172.17.0.1/private/ jessie-staging/main tk8.5 armhf 8.5.14-2 [1123 kB]
Get:89 http://172.17.0.1/private/ jessie-staging/main r-base-core armhf 3.0.2-1 [21.2 MB]
Get:90 http://172.17.0.1/private/ jessie-staging/main r-base-dev all 3.0.2-1 [3926 B]
Get:91 http://172.17.0.1/private/ jessie-staging/main r-bioc-biocgenerics all 0.8.0-1 [379 kB]
Get:92 http://172.17.0.1/private/ jessie-staging/main r-bioc-iranges armhf 1.20.6-1 [1895 kB]
debconf: delaying package configuration, since apt-utils is not installed
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No schema files found: doing nothing.
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update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
All runlevel operations denied by policy
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Setting up fontconfig (2.11.0-2) ...
Regenerating fonts cache... done.
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Creating config file /etc/papersize with new version
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update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
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Setting up tcl8.5 (8.5.14-2) ...
update-alternatives: using /usr/bin/tclsh8.5 to provide /usr/bin/tclsh (tclsh) in auto mode
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update-alternatives: using /usr/bin/wish8.5 to provide /usr/bin/wish (wish) in auto mode
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Creating config file /etc/R/Renviron with new version
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Processing triggers for libc-bin (2.17-97) ...
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment │
└──────────────────────────────────────────────────────────────────────────────┘
Kernel: Linux 3.11.0-armv7-x13 armhf (armv7l)
Toolchain package versions: binutils_2.24-2 dpkg-dev_1.17.5+rpi1 g++-4.6_4.6.4-5+rpi1 g++-4.8_4.8.2-14 gcc-4.6_4.6.4-5+rpi1 gcc-4.8_4.8.2-14 libc6-dev_2.17-97 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 libstdc++6-4.6-dev_4.6.4-5+rpi1 linux-libc-dev_3.12.6-2+rpi1
Package versions: apt_0.9.14.2 base-files_7.2+rpi1 base-passwd_3.5.28 bash_4.2+dfsg-1 binutils_2.24-2 bsdmainutils_9.0.5 bsdutils_1:2.20.1-5.5 build-essential_11.6 bzip2_1.0.6-5 cdbs_0.4.122 coreutils_8.21-1 cpio_2.11+dfsg-1 cpp_4:4.8.2-1 cpp-4.6_4.6.4-5+rpi1 cpp-4.8_4.8.2-14 dash_0.5.7-4 debconf_1.5.52 debfoster_2.7-1.2 debhelper_9.20131227 debianutils_4.4 diffutils_1:3.3-1 dpkg_1.17.5+rpi1 dpkg-dev_1.17.5+rpi1 e2fslibs_1.42.9-2 e2fsprogs_1.42.9-2 fakeroot_1.18.4-2 file_1:5.14-2 findutils_4.4.2-7 fontconfig_2.11.0-2 fontconfig-config_2.11.0-2 fonts-dejavu-core_2.34-1 g++_4:4.8.2-1 g++-4.6_4.6.4-5+rpi1 g++-4.8_4.8.2-14 gcc_4:4.8.2-1 gcc-4.5-base_4.5.3-12+rpi1 gcc-4.6_4.6.4-5+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-9+rpi1 gcc-4.8_4.8.2-14 gcc-4.8-base_4.8.2-14 gettext_0.18.3.1-2 gettext-base_0.18.3.1-2 gfortran_4:4.8.2-1 gfortran-4.8_4.8.2-14 gnupg_1.4.16-1 gpgv_1.4.16-1 grep_2.15-2 groff-base_1.22.2-4 gzip_1.6-3 hostname_3.15 initramfs-tools_0.115 initscripts_2.88dsf-45 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.1 klibc-utils_2.0.2-1+rpi1 kmod_16-2 libacl1_2.2.52-1 libapt-pkg4.12_0.9.14.2 libarchive-extract-perl_0.70-1 libasan0_4.8.2-14 libasprintf0c2_0.18.3.1-2 libatomic1_4.8.2-14 libattr1_1:2.4.47-1 libaudit-common_1:2.3.2-3 libaudit1_1:2.3.2-3 libblas-dev_1.2.20110419-7 libblas3_1.2.20110419-7 libblkid1_2.20.1-5.5 libbz2-1.0_1.0.6-5 libbz2-dev_1.0.6-5 libc-bin_2.17-97 libc-dev-bin_2.17-97 libc6_2.17-97 libc6-dev_2.17-97 libcairo2_1.12.16-2+rpi1 libcap2_1:2.22-1.2 libclass-isa-perl_0.36-5 libcloog-isl4_0.18.1-3 libcomerr2_1.42.9-2 libcroco3_0.6.8-2 libdatrie1_0.2.8-1 libdb5.1_5.1.29-6 libdbus-1-3_1.7.10-2 libdpkg-perl_1.17.5+rpi1 libdrm2_2.4.50-1 libexpat1_2.1.0-4 libffi6_3.0.13-11 libfontconfig1_2.11.0-2 libfreetype6_2.5.2-1 libgc1c2_1:7.2d-6 libgcc-4.8-dev_4.8.2-14 libgcc1_1:4.8.2-14 libgdbm3_1.8.3-12 libgfortran-4.8-dev_4.8.2-14 libgfortran3_4.8.2-14 libgl1-mesa-glx_9.2.2-1 libglapi-mesa_9.2.2-1 libglib2.0-0_2.36.4-1 libgmp10_2:5.1.3+dfsg-1 libgomp1_4.8.2-14 libgraphite2-3_1.2.4-1 libharfbuzz0b_0.9.25-1 libice6_2:1.0.8-2 libisl10_0.12.1-2 libjbig0_2.0-2 libjpeg8_8d-2 libjpeg8-dev_8d-2 libklibc_2.0.2-1+rpi1 libkmod2_16-2 liblapack-dev_3.5.0-2 liblapack3_3.5.0-2 liblog-message-simple-perl_0.10-1 liblzma5_5.1.1alpha+20120614-2 libmagic1_1:5.14-2 libmodule-pluggable-perl_5.1-1 libmount1_2.20.1-5.5 libmpc2_0.9-4 libmpc3_1.0.1-1 libmpfr4_3.1.2-1 libncurses5_5.9+20130608-1 libncurses5-dev_5.9+20130608-1 libncursesw5_5.9+20130608-1 libpam-modules_1.1.3-9 libpam-modules-bin_1.1.3-9 libpam-runtime_1.1.3-9 libpam0g_1.1.3-9 libpango-1.0-0_1.36.0-1+b1 libpangocairo-1.0-0_1.36.0-1+b1 libpangoft2-1.0-0_1.36.0-1+b1 libpaper-utils_1.1.24+nmu2 libpaper1_1.1.24+nmu2 libpcre3_1:8.31-2 libpcre3-dev_1:8.31-2 libpcrecpp0_1:8.31-2 libpipeline1_1.2.6-1 libpixman-1-0_0.32.4-1 libpng12-0_1.2.49-5 libpng12-dev_1.2.49-5 libpod-latex-perl_0.61-1 libprocps0_1:3.3.4-2 libreadline-dev_6.2+dfsg-0.1 libreadline6_6.2+dfsg-0.1 libreadline6-dev_6.2+dfsg-0.1 libselinux1_2.2.2-1 libsemanage-common_2.2-1 libsemanage1_2.2-1 libsepol1_2.2-1 libslang2_2.2.4-16 libsm6_2:1.2.1-2 libss2_1.42.9-2 libstdc++-4.8-dev_4.8.2-14 libstdc++6_4.8.2-14 libstdc++6-4.6-dev_4.6.4-5+rpi1 libswitch-perl_2.16-2 libterm-ui-perl_0.42-1 libthai-data_0.1.20-3 libthai0_0.1.20-3 libtiff5_4.0.3-7 libtimedate-perl_2.3000-1 libtinfo-dev_5.9+20130608-1 libtinfo5_5.9+20130608-1 libudev0_175-7.2 libudev1_204-6 libunistring0_0.9.3-5 libusb-0.1-4_2:0.1.12-23.3 libustr-1.0-1_1.0.4-3 libuuid1_2.20.1-5.5 libx11-6_2:1.6.2-1 libx11-data_2:1.6.2-1 libx11-xcb1_2:1.6.2-1 libxau6_1:1.0.8-1 libxcb-dri2-0_1.10-2 libxcb-glx0_1.10-2 libxcb-render0_1.10-2 libxcb-shm0_1.10-2 libxcb1_1.10-2 libxdamage1_1:1.1.4-1 libxdmcp6_1:1.1.1-1 libxext6_2:1.3.2-1 libxfixes3_1:5.0.1-1 libxft2_2.3.1-1 libxml2_2.9.1+dfsg1-3 libxrender1_1:0.9.8-1 libxss1_1:1.2.2-1 libxt6_1:1.1.4-1 libxxf86vm1_1:1.1.3-1 linux-libc-dev_3.12.6-2+rpi1 login_1:4.1.5.1-1 lsb-base_4.1+Debian12+rpi1 make_3.81-8.3 makedev_2.3.1-93 man-db_2.6.5-3 mawk_1.3.3-17 mount_2.20.1-5.5 multiarch-support_2.17-97 ncurses-base_5.9+20130608-1 ncurses-bin_5.9+20130608-1 passwd_1:4.1.5.1-1 patch_2.7.1-4 perl_5.18.2-2 perl-base_5.18.2-2 perl-modules_5.18.2-2 plymouth_0.8.8-6+deb8u3 po-debconf_1.0.16+nmu2 procps_1:3.3.4-2 r-base-core_3.0.2-1 r-base-dev_3.0.2-1 r-bioc-biocgenerics_0.8.0-1 r-bioc-iranges_1.20.6-1 raspbian-archive-keyring_20120528.2 readline-common_6.2+dfsg-0.1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-xvector-dummy_0.invalid.0 sed_4.2.2-3 sensible-utils_0.0.9 sysv-rc_2.88dsf-45 sysvinit_2.88dsf-45 sysvinit-core_2.88dsf-45 sysvinit-utils_2.88dsf-45 tar_1.26+dfsg-8 tcl8.5_8.5.14-2 tk8.5_8.5.14-2 tzdata_2013i-1 ucf_3.0027+nmu1 udev_204-6 unzip_6.0-10 util-linux_2.20.1-5.5 x11-common_1:7.7+5 xdg-utils_1.1.0~rc1+git20111210-7 xz-utils_5.1.1alpha+20120614-2 zip_3.0-8 zlib1g_1:1.2.8.dfsg-1 zlib1g-dev_1:1.2.8.dfsg-1
┌──────────────────────────────────────────────────────────────────────────────┐
│ Build │
└──────────────────────────────────────────────────────────────────────────────┘
Unpack source
─────────────
gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Thu Jan 16 12:34:42 2014 UTC using DSA key ID C09FD35A
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-bioc-xvector_0.2.0-2.dsc
dpkg-source: info: extracting r-bioc-xvector in r-bioc-xvector-0.2.0
dpkg-source: info: unpacking r-bioc-xvector_0.2.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-xvector_0.2.0-2.debian.tar.gz
Check disc space
────────────────
Sufficient free space for build
User Environment
────────────────
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/build/buildd
SCHROOT_ALIAS_NAME=jessie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=jessie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=jessie-staging-armhf-sbuild-379dd673-d46e-45e2-9ea7-18ce61dcfd1a
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
─────────────────
dpkg-buildpackage: source package r-bioc-xvector
dpkg-buildpackage: source version 0.2.0-2
dpkg-buildpackage: source distribution unstable
dpkg-source --before-build r-bioc-xvector-0.2.0
dpkg-buildpackage: host architecture armhf
fakeroot debian/rules clean
test -x debian/rules
dh_clean
if test -d src; then \
find src -regex ".*\.o" | \
xargs --no-run-if-empty -r rm; \
fi
rm -f config.log config.status
debian/rules build-arch
test -x debian/rules
mkdir -p "."
fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep
dh_installdirs -A
mkdir -p "."
dh_installdirs usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.0.2-1)" >> debian/r-bioc-xvector.substvars
if test -f /usr/bin/xvfb-run; then \
xvfb-run -a \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-xvector/usr/lib/R/site-library --clean \
. ; \
else \
R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-xvector/usr/lib/R/site-library \
--clean . ;\
fi
* installing *source* package 'XVector' ...
** libs
make[1]: Entering directory `/«PKGBUILDDIR»/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c Ocopy_byteblocks.c -o Ocopy_byteblocks.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c R_init_XVector.c -o R_init_XVector.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c SharedDouble_class.c -o SharedDouble_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c SharedInteger_class.c -o SharedInteger_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c SharedRaw_class.c -o SharedRaw_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c SharedVector_class.c -o SharedVector_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c XRawList_comparison.c -o XRawList_comparison.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c XVectorList_class.c -o XVectorList_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c XVector_class.c -o XVector_class.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c slice_methods.c -o slice_methods.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c vector_copy.c -o vector_copy.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/IRanges/include" -fpic -O3 -pipe -g -c view_summarization_methods.c -o view_summarization_methods.o
gcc -std=gnu99 -shared -o XVector.so IRanges_stubs.o Ocopy_byteblocks.o R_init_XVector.o SharedDouble_class.o SharedInteger_class.o SharedRaw_class.o SharedVector_class.o XRawList_comparison.o XVectorList_class.o XVector_class.o slice_methods.o vector_copy.o view_summarization_methods.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory `/«PKGBUILDDIR»/src'
make[1]: Entering directory `/«PKGBUILDDIR»/src'
make[1]: Leaving directory `/«PKGBUILDDIR»/src'
installing to /«PKGBUILDDIR»/debian/r-bioc-xvector/usr/lib/R/site-library/XVector/libs
** R
** inst
** preparing package for lazy loading
Creating a generic function for 'toString' from package 'base' in package 'XVector'
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded
* DONE (XVector)
rm -vf /«PKGBUILDDIR»/debian/r-bioc-xvector/usr/lib/R/site-library/R.css \
/«PKGBUILDDIR»/debian/r-bioc-xvector/usr/lib/R/site-library/XVector/COPYING \
/«PKGBUILDDIR»/debian/r-bioc-xvector/usr/lib/R/site-library/XVector/LICENSE.txt
if test -f debian/overrides; then \
install -d /«PKGBUILDDIR»/debian/r-bioc-xvector/usr/share/lintian/overrides ; \
install -m 0644 debian/overrides \
/«PKGBUILDDIR»/debian/r-bioc-xvector/usr/share/lintian/overrides/r-bioc-xvector; \
fi
Adding cdbs dependencies to debian/r-bioc-xvector.substvars
dh_installdirs -pr-bioc-xvector
dh_installdocs -pr-bioc-xvector ./TODO
dh_installexamples -pr-bioc-xvector
dh_installman -pr-bioc-xvector
dh_installinfo -pr-bioc-xvector
dh_installmenu -pr-bioc-xvector
dh_installcron -pr-bioc-xvector
dh_installinit -pr-bioc-xvector
dh_installdebconf -pr-bioc-xvector
dh_installemacsen -pr-bioc-xvector
dh_installcatalogs -pr-bioc-xvector
dh_installpam -pr-bioc-xvector
dh_installlogrotate -pr-bioc-xvector
dh_installlogcheck -pr-bioc-xvector
dh_installchangelogs -pr-bioc-xvector
dh_installudev -pr-bioc-xvector
dh_lintian -pr-bioc-xvector
dh_bugfiles -pr-bioc-xvector
dh_install -pr-bioc-xvector
dh_link -pr-bioc-xvector
dh_installmime -pr-bioc-xvector
dh_installgsettings -pr-bioc-xvector
dh_strip -pr-bioc-xvector
dh_compress -pr-bioc-xvector
dh_fixperms -pr-bioc-xvector
dh_makeshlibs -pr-bioc-xvector
dh_installdeb -pr-bioc-xvector
dh_perl -pr-bioc-xvector
dh_shlibdeps -pr-bioc-xvector
dh_gencontrol -pr-bioc-xvector
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -pr-bioc-xvector
dh_builddeb -pr-bioc-xvector
dpkg-deb: building package `r-bioc-xvector' in `../r-bioc-xvector_0.2.0-2_armhf.deb'.
dpkg-genchanges -B -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../r-bioc-xvector_0.2.0-2_armhf.changes
dpkg-genchanges: arch-specific upload - not including arch-independent packages
dpkg-genchanges: binary-only upload - not including any source code
dpkg-source --after-build r-bioc-xvector-0.2.0
dpkg-buildpackage: binary only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20140122-1745
Finished
────────
I: Built successfully
┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-xvector_0.2.0-2_armhf.changes:
─────────────────────────────────────
Format: 1.8
Date: Thu, 16 Jan 2014 13:31:06 +0100
Source: r-bioc-xvector
Binary: r-bioc-xvector
Architecture: armhf
Version: 0.2.0-2
Distribution: jessie-staging
Urgency: medium
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-xvector - BioConductor representation and manpulation of external sequences
Closes: 735537
Changes:
r-bioc-xvector (0.2.0-2) unstable; urgency=medium
.
[ Martin Pitt ]
* debian/tests/control: Add missing r-cran-runit test dependency, and allow
stderr output.
Closes: #735537
.
[ Andreas Tille ]
* Standards-Version: 3.9.5
Checksums-Sha1:
4c37006329c3e92e9f6338c4fe8ffecf6e7edb66 322770 r-bioc-xvector_0.2.0-2_armhf.deb
Checksums-Sha256:
cca34c3cceae12b61c04c413dca885936be0baf18260712af6ae1185d85417a3 322770 r-bioc-xvector_0.2.0-2_armhf.deb
Files:
948b024bd113529135cff29c80d25763 322770 gnu-r optional r-bioc-xvector_0.2.0-2_armhf.deb
┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents │
└──────────────────────────────────────────────────────────────────────────────┘
r-bioc-xvector_0.2.0-2_armhf.deb
────────────────────────────────
new debian package, version 2.0.
size 322770 bytes: control archive=1438 bytes.
588 bytes, 12 lines control
2280 bytes, 28 lines md5sums
Package: r-bioc-xvector
Version: 0.2.0-2
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 494
Depends: r-base-core (>= 3.0.2-1), libc6 (>= 2.4), r-bioc-biocgenerics, r-bioc-iranges
Section: gnu-r
Priority: optional
Homepage: http://www.bioconductor.org/packages/release/bioc/html/XVector.html
Description: BioConductor representation and manpulation of external sequences
This BioConductor package provides memory efficient S4 classes for storing
sequences "externally" (behind an R external pointer, or on disk).
drwxr-xr-x root/root 0 2014-01-22 17:45 ./
drwxr-xr-x root/root 0 2014-01-22 17:45 ./usr/
drwxr-xr-x root/root 0 2014-01-22 17:44 ./usr/lib/
drwxr-xr-x root/root 0 2014-01-22 17:44 ./usr/lib/R/
drwxr-xr-x root/root 0 2014-01-22 17:44 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/
-rw-r--r-- root/root 2239 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/NAMESPACE
-rw-r--r-- root/root 1133 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/DESCRIPTION
drwxr-xr-x root/root 0 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/Meta/
-rw-r--r-- root/root 1032 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/Meta/package.rds
-rw-r--r-- root/root 1688 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/Meta/Rd.rds
-rw-r--r-- root/root 1774 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/Meta/hsearch.rds
-rw-r--r-- root/root 1367 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/Meta/links.rds
-rw-r--r-- root/root 682 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/Meta/nsInfo.rds
drwxr-xr-x root/root 0 2014-01-22 17:45 ./usr/lib/R/site-library/XVector/libs/
-rw-r--r-- root/root 68460 2014-01-22 17:45 ./usr/lib/R/site-library/XVector/libs/XVector.so
drwxr-xr-x root/root 0 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/R/
-rw-r--r-- root/root 1056 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/R/XVector
-rw-r--r-- root/root 326217 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/R/XVector.rdb
-rw-r--r-- root/root 4482 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/R/XVector.rdx
drwxr-xr-x root/root 0 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/include/
-rw-r--r-- root/root 1204 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/include/XVector_defines.h
-rw-r--r-- root/root 5174 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/include/XVector_interface.h
-rw-r--r-- root/root 9380 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/include/_XVector_stubs.c
drwxr-xr-x root/root 0 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/unitTests/
-rw-r--r-- root/root 539 2014-01-22 17:44 ./usr/lib/R/site-library/XVector/unitTests/test_slice-methods.R
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build │
└──────────────────────────────────────────────────────────────────────────────┘
┌──────────────────────────────────────────────────────────────────────────────┐
│ Cleanup │
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Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use
┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary │
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Build Architecture: armhf
Build-Space: 1368
Build-Time: 86
Distribution: jessie-staging
Host Architecture: armhf
Install-Time: 428
Job: r-bioc-xvector_0.2.0-2
Machine Architecture: armhf
Package: r-bioc-xvector
Package-Time: 576
Source-Version: 0.2.0-2
Space: 1368
Status: successful
Version: 0.2.0-2
────────────────────────────────────────────────────────────────────────────────
Finished at 20140122-1745
Build needed 00:09:36, 1368k disc space