Build log for r-bioc-variantannotation (1.48.1-1) on armhf

r-bioc-variantannotation → 1.48.1-1 → armhf → 2023-12-18 04:43:24

sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023

+==============================================================================+
| r-bioc-variantannotation 1.48.1-1 (armhf)    Mon, 18 Dec 2023 04:38:42 +0000 |
+==============================================================================+

Package: r-bioc-variantannotation
Version: 1.48.1-1
Source Version: 1.48.1-1
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-9b421001-3325-4e9f-8253-39e64223fe2a' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-variantannotation-uGJKqf/resolver-jATCrM' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.3 MB in 6s (5183 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-variantannotation' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-variantannotation.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-variantannotation.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1897 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-variantannotation 1.48.1-1 (dsc) [2587 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-variantannotation 1.48.1-1 (tar) [1887 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-variantannotation 1.48.1-1 (diff) [7900 B]
Fetched 1897 kB in 0s (3968 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-variantannotation-uGJKqf/r-bioc-variantannotation-1.48.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-variantannotation-uGJKqf' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-matrixgenerics, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-rsamtools, r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors, r-bioc-iranges, r-bioc-xvector, r-bioc-biostrings, r-bioc-annotationdbi, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-rhtslib (>= 1.99.3), libcurl4-openssl-dev | libcurl4-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-matrixgenerics, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-rsamtools, r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors, r-bioc-iranges, r-bioc-xvector, r-bioc-biostrings, r-bioc-annotationdbi, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-rhtslib (>= 1.99.3), libcurl4-openssl-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1043 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1061 B]
Fetched 2719 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils bsdutils
  ca-certificates cpp-13 dctrl-tools debhelper dh-autoreconf dh-r
  dh-strip-nondeterminism dpkg-dev dwz file fontconfig fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono g++-13 gcc-13 gcc-13-base gettext
  gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
  libalgorithm-c3-perl libarchive-zip-perl libasan8 libatomic1
  libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
  libblkid1 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcc1-0
  libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
  libcurl3-gnutls libcurl4 libcurl4-openssl-dev libdata-optlist-perl
  libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
  libdevel-globaldestruction-perl libdevel-overloadinfo-perl
  libdevel-stacktrace-perl libdist-checkconflicts-perl libdpkg-perl
  libdynaloader-functions-perl libelf1 libencode-locale-perl
  libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-13-dev
  libgcc-s1 libgfortran-13-dev libgfortran5 libglib2.0-0 libgomp1
  libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
  libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev libjs-jquery liblapack-dev liblapack3 liblerc4
  liblwp-mediatypes-perl liblzma-dev liblzma5 libmagic-mgc libmagic1
  libmodule-implementation-perl libmodule-runtime-conflicts-perl
  libmodule-runtime-perl libmoose-perl libmount1 libmro-compat-perl
  libnamespace-clean-perl libncurses-dev libncurses6 libncursesw6
  libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
  libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
  libreadline-dev libreadline8 librtmp1 libsharpyuv0 libsm6 libsmartcols1
  libssh2-1 libstdc++-13-dev libstdc++6 libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
  libthai0 libtiff6 libtimedate-perl libtinfo6 libtk8.6 libtool
  libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libuuid1
  libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
  libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
  libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mount
  ncurses-base ncurses-bin node-html5shiv openssl pkg-config pkgconf
  pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-annotationdbi
  r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
  r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome
  r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
  r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
  r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib
  r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors
  r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector
  r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bit
  r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli
  r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi
  r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-fansi r-cran-fastmap
  r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options
  r-cran-generics r-cran-glue r-cran-hms r-cran-httr r-cran-jsonlite
  r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler
  r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime
  r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-plogr r-cran-png
  r-cran-prettyunits r-cran-progress r-cran-purrr r-cran-r6 r-cran-rappdirs
  r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite
  r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble
  r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr
  r-cran-xml r-cran-xml2 r-cran-yaml readline-common sensible-utils ucf unzip
  util-linux x11-common xauth xdg-utils xz-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc gcc-13-locales cpp-13-doc
  debtags dh-make postgresql-client-common debian-keyring gcc-13-doc
  gettext-doc libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc
  libcoarrays-dev groff liblapack-doc libboost1.81-doc libboost-atomic1.81-dev
  libboost-chrono1.81-dev libboost-container1.81-dev libboost-context1.81-dev
  libboost-contract1.81-dev libboost-coroutine1.81-dev
  libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev
  libboost-filesystem1.81-dev libboost-graph1.81-dev
  libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev
  libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev
  libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev
  libboost-program-options1.81-dev libboost-python1.81-dev
  libboost-random1.81-dev libboost-regex1.81-dev
  libboost-serialization1.81-dev libboost-stacktrace1.81-dev
  libboost-system1.81-dev libboost-test1.81-dev libboost-thread1.81-dev
  libboost-timer1.81-dev libboost-type-erasure1.81-dev libboost-wave1.81-dev
  libboost1.81-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.81-dev
  libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
  libssl-dev git bzr low-memory-monitor icu-doc liblzma-doc cryptsetup-bin
  ncurses-doc libscalar-number-perl readline-doc libstdc++-13-doc tcl8.6 tk8.6
  libtool-doc gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl
  libcurl4-gnutls-dev m4-doc apparmor less www-browser nfs-common nodejs
  libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
  texlive-base texlive-latex-base texlive-plain-generic
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
  texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db
  r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-cran-knitr
  r-bioc-all r-cran-testthat r-cran-rmarkdown r-bioc-affy r-bioc-deseq2
  r-bioc-annotate r-cran-foreach r-cran-bbmisc r-cran-doparallel
  r-bioc-variantannotation r-bioc-shortread r-cran-batchtools
  r-cran-data.table r-cran-mockery r-cran-webmockr r-cran-biocmanager
  r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr r-bioc-delayedmatrixstats
  r-bioc-edger r-bioc-ensembldb r-bioc-annotationfilter r-cran-markdown
  r-bioc-gviz r-bioc-annotationhub r-bioc-dexseq r-bioc-sparsematrixstats
  r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-callr
  r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps
  r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-rmysql r-cran-shiny
  r-cran-forcats r-cran-ggplot2 r-cran-r.utils r-cran-waldo r-cran-lubridate
  r-cran-getopt r-cran-formattable r-cran-nanotime r-cran-palmerpenguins
  r-cran-scales r-cran-survival r-cran-units r-cran-vdiffr r-cran-rcpp
  r-cran-rmpi r-cran-rlecuyer r-cran-spelling r-cran-bench r-cran-brio
  r-cran-evaluate r-cran-here r-cran-pkgbuild r-cran-pkgload r-cran-readr
  dosfstools kbd util-linux-extra util-linux-locales
Recommended packages:
  devscripts cme git-buildpackage libalgorithm-merge-perl curl | wget | lynx
  bzip2-doc libclass-c3-xs-perl libfile-fcntllock-perl libdevel-lexalias-perl
  libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs
  libio-compress-brotli-perl javascript-common libdevel-partialdump-perl
  libgpm2 libpng-tools publicsuffix libltdl-dev uuid-runtime
  libmail-sendmail-perl r-recommended r-doc-html r-cran-testthat
  r-cran-mockery r-cran-bench r-cran-brio r-cran-callr r-cran-covr
  r-cran-decor r-cran-desc r-cran-ggplot2 r-cran-knitr r-cran-lobstr
  r-cran-rmarkdown r-cran-scales r-cran-rcpp r-cran-spelling r-cran-httpuv
  r-cran-webutils r-cran-rpostgresql r-cran-broom r-cran-rmysql
  r-cran-unitizer r-cran-testit r-cran-survival r-cran-pkgload r-cran-jpeg
  r-cran-readr r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse
  r-cran-base64enc r-cran-markdown r-cran-r.devices r-cran-sodium
  r-cran-lubridate r-cran-runit r-cran-fs r-cran-usethis r-cran-dbitest
  r-cran-gert r-cran-gh r-cran-rvest r-cran-htmltools r-cran-htmlwidgets
  r-cran-data.table r-cran-mockr r-cran-formattable r-cran-pkgdown
  r-cran-waldo r-cran-zeallot libfile-mimeinfo-perl libnet-dbus-perl
  libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
  gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
  libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1
  libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
  libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
  libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl
  libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
  libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
  libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev libjs-jquery liblapack-dev liblapack3 liblerc4
  liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
  libmodule-implementation-perl libmodule-runtime-conflicts-perl
  libmodule-runtime-perl libmoose-perl libmro-compat-perl
  libnamespace-clean-perl libncurses-dev libncurses6 libnghttp2-14
  libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
  libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
  libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
  libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
  libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
  libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
  libxss1 libxt6 m4 man-db node-html5shiv openssl pkg-config pkgconf
  pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-annotationdbi
  r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
  r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome
  r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
  r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
  r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib
  r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4arrays r-bioc-s4vectors
  r-bioc-sparsearray r-bioc-summarizedexperiment r-bioc-xvector
  r-bioc-zlibbioc r-cran-abind r-cran-askpass r-cran-bh r-cran-bit
  r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem r-cran-cli
  r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi
  r-cran-dbplyr r-cran-digest r-cran-dplyr r-cran-fansi r-cran-fastmap
  r-cran-filelock r-cran-formatr r-cran-futile.logger r-cran-futile.options
  r-cran-generics r-cran-glue r-cran-hms r-cran-httr r-cran-jsonlite
  r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler
  r-cran-magrittr r-cran-matrix r-cran-matrixstats r-cran-memoise r-cran-mime
  r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-plogr r-cran-png
  r-cran-prettyunits r-cran-progress r-cran-purrr r-cran-r6 r-cran-rappdirs
  r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite
  r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble
  r-cran-tidyr r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr
  r-cran-xml r-cran-xml2 r-cran-yaml sbuild-build-depends-main-dummy
  sensible-utils ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  bsdutils cpp-13 dpkg-dev g++-13 gcc-13 gcc-13-base libasan8 libatomic1
  libblkid1 libcc1-0 libdpkg-perl libgcc-13-dev libgcc-s1 libgomp1 liblzma5
  libmount1 libncursesw6 libreadline8 libsmartcols1 libstdc++-13-dev
  libstdc++6 libtinfo6 libubsan1 libuuid1 mount ncurses-base ncurses-bin
  readline-common util-linux xz-utils
30 upgraded, 264 newly installed, 0 to remove and 46 not upgraded.
1 not fully installed or removed.
Need to get 243 MB/245 MB of archives.
After this operation, 584 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1048 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.3-2 [134 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.3-2 [86.6 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf ncurses-bin armhf 6.4+20231209-1 [422 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.3-2 [1113 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf ncurses-base all 6.4+20231209-1 [267 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf readline-common all 8.2-3 [69.1 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libcc1-0 armhf 13.2.0-7+rpi1 [35.4 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libgomp1 armhf 13.2.0-7+rpi1 [104 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf gcc-13-base armhf 13.2.0-7+rpi1 [41.0 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf libatomic1 armhf 13.2.0-7+rpi1 [8448 B]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libasan8 armhf 13.2.0-7+rpi1 [2391 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf libubsan1 armhf 13.2.0-7+rpi1 [964 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf libstdc++6 armhf 13.2.0-7+rpi1 [578 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf g++-13 armhf 13.2.0-7+rpi1 [8137 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf libstdc++-13-dev armhf 13.2.0-7+rpi1 [2208 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libgcc-13-dev armhf 13.2.0-7+rpi1 [764 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf gcc-13 armhf 13.2.0-7+rpi1 [14.7 MB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf cpp-13 armhf 13.2.0-7+rpi1 [7372 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf libgcc-s1 armhf 13.2.0-7+rpi1 [36.3 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.3-2 [145 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf liblzma5 armhf 5.4.5-0.1 [226 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.3-2 [168 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf libtinfo6 armhf 6.4+20231209-1 [325 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf libncursesw6 armhf 6.4+20231209-1 [107 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf libreadline8 armhf 8.2-3 [143 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.3-2 [102 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.3-2 [28.2 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.8-1 [65.5 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.3-2 [81.2 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:33 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.12.0-1 [1358 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:35 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.11-1 [1367 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf xz-utils armhf 5.4.5-0.1 [499 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.8 [82.1 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.8 [956 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:68 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-3 [195 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.4.0-2+rpi1 [362 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.3-1 [1256 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-7+rpi1 [247 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-3 [188 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-3 [40.3 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-3 [30.5 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-4 [132 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-3 [299 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.2-1 [26.4 MB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-7+rpi1 [293 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-7+rpi1 [7839 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:13.2.0-1+rpi1 [1424 B]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20231209-1 [80.5 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20231209-1 [290 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-3 [124 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-2 [336 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.1 [278 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.2-1 [4504 B]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.45-1 [82.0 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:175 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:176 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:180 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:185 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.4.0-2+rpi1 [358 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20231212 [42.2 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf libboost1.81-dev armhf 1.81.0-7 [10.4 MB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf libcurl4-openssl-dev armhf 8.4.0-2+rpi1 [446 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf node-html5shiv all 3.7.3+dfsg-5 [13.2 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.48.1-2 [597 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biobase armhf 2.62.0-1 [2118 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4vectors armhf 0.40.2+dfsg-1 [2055 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-bioc-iranges armhf 2.36.0-1 [2249 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf r-cran-dbi all 1.1.3-1 [687 kB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf r-cran-bit armhf 4.0.5-1 [1066 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf r-cran-rlang armhf 1.1.2-1 [1654 kB]
Get:209 http://172.17.4.1/private trixie-staging/main armhf r-cran-cli armhf 3.6.1-1 [1307 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf r-cran-vctrs armhf 0.6.4-1 [1336 kB]
Get:213 http://172.17.4.1/private trixie-staging/main armhf r-cran-blob all 1.2.4-1 [49.6 kB]
Get:214 http://172.17.4.1/private trixie-staging/main armhf r-cran-fastmap armhf 1.1.1-1 [67.1 kB]
Get:215 http://172.17.4.1/private trixie-staging/main armhf r-cran-cachem armhf 1.0.8-1 [71.8 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:219 http://172.17.4.1/private trixie-staging/main armhf r-cran-cpp11 all 0.4.6-1 [219 kB]
Get:220 http://172.17.4.1/private trixie-staging/main armhf r-cran-rsqlite armhf 2.3.3-1 [1018 kB]
Get:221 http://172.17.4.1/private trixie-staging/main armhf r-cran-curl armhf 5.1.0+dfsg-1 [172 kB]
Get:222 http://172.17.4.1/private trixie-staging/main armhf r-cran-jsonlite armhf 1.8.8+dfsg-1 [438 kB]
Get:223 http://172.17.4.1/private trixie-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:224 http://172.17.4.1/private trixie-staging/main armhf r-cran-sys armhf 3.4.2-1 [42.8 kB]
Get:225 http://172.17.4.1/private trixie-staging/main armhf r-cran-askpass armhf 1.2.0-1 [23.8 kB]
Get:226 http://172.17.4.1/private trixie-staging/main armhf r-cran-openssl armhf 2.1.1+dfsg-2 [392 kB]
Get:227 http://172.17.4.1/private trixie-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:228 http://172.17.4.1/private trixie-staging/main armhf r-cran-httr all 1.4.7+dfsg-1 [459 kB]
Get:229 http://172.17.4.1/private trixie-staging/main armhf r-cran-png armhf 0.1-8-1 [40.2 kB]
Get:230 http://172.17.4.1/private trixie-staging/main armhf r-bioc-zlibbioc all 1.48.0+dfsg-1 [9344 B]
Get:231 http://172.17.4.1/private trixie-staging/main armhf r-bioc-xvector armhf 0.42.0-1 [620 kB]
Get:232 http://172.17.4.1/private trixie-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:233 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcurl armhf 1.98-1.13+dfsg-1 [781 kB]
Get:234 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodbdata all 1.2.10-1 [12.0 MB]
Get:235 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodb all 1.38.1+dfsg-1 [3840 kB]
Get:236 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:237 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biostrings armhf 2.70.1-1 [14.2 MB]
Get:238 http://172.17.4.1/private trixie-staging/main armhf r-bioc-keggrest all 1.42.0+dfsg-1 [188 kB]
Get:239 http://172.17.4.1/private trixie-staging/main armhf r-bioc-annotationdbi all 1.64.1-1 [4705 kB]
Get:240 http://172.17.4.1/private trixie-staging/main armhf r-cran-generics all 0.1.3-1 [81.4 kB]
Get:241 http://172.17.4.1/private trixie-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:242 http://172.17.4.1/private trixie-staging/main armhf r-cran-fansi armhf 1.0.5-1 [611 kB]
Get:243 http://172.17.4.1/private trixie-staging/main armhf r-cran-utf8 armhf 1.2.4-1 [129 kB]
Get:244 http://172.17.4.1/private trixie-staging/main armhf r-cran-pillar all 1.9.0+dfsg-1 [463 kB]
Get:245 http://172.17.4.1/private trixie-staging/main armhf r-cran-tibble armhf 3.2.1+dfsg-2 [422 kB]
Get:246 http://172.17.4.1/private trixie-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:247 http://172.17.4.1/private trixie-staging/main armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [222 kB]
Get:248 http://172.17.4.1/private trixie-staging/main armhf r-cran-dplyr armhf 1.1.4-1 [1520 kB]
Get:249 http://172.17.4.1/private trixie-staging/main armhf r-cran-purrr armhf 1.0.2-1 [503 kB]
Get:250 http://172.17.4.1/private trixie-staging/main armhf r-cran-stringi armhf 1.8.2-1 [831 kB]
Get:251 http://172.17.4.1/private trixie-staging/main armhf r-cran-stringr all 1.5.1-1 [296 kB]
Get:252 http://172.17.4.1/private trixie-staging/main armhf r-cran-tidyr armhf 1.3.0-1 [1184 kB]
Get:253 http://172.17.4.1/private trixie-staging/main armhf r-cran-dbplyr all 2.4.0+dfsg-1 [1188 kB]
Get:254 http://172.17.4.1/private trixie-staging/main armhf r-cran-filelock armhf 1.0.2-2 [24.2 kB]
Get:255 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocfilecache all 2.10.1+dfsg-1 [301 kB]
Get:256 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocio all 1.12.0+dfsg-1 [214 kB]
Get:257 http://172.17.4.1/private trixie-staging/main armhf r-cran-formatr all 1.14-1 [152 kB]
Get:258 http://172.17.4.1/private trixie-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:259 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:260 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:261 http://172.17.4.1/private trixie-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:262 http://172.17.4.1/private trixie-staging/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB]
Get:263 http://172.17.4.1/private trixie-staging/main armhf r-cran-bh all 1.81.0-1 [5776 B]
Get:264 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocparallel armhf 1.36.0-1 [1337 kB]
Get:265 http://172.17.4.1/private trixie-staging/main armhf r-cran-xml armhf 3.99-0.16-1 [1738 kB]
Get:266 http://172.17.4.1/private trixie-staging/main armhf r-cran-hms all 1.1.3-1 [104 kB]
Get:267 http://172.17.4.1/private trixie-staging/main armhf r-cran-prettyunits all 1.2.0-1 [162 kB]
Get:268 http://172.17.4.1/private trixie-staging/main armhf r-cran-progress all 1.2.2-2 [88.9 kB]
Get:269 http://172.17.4.1/private trixie-staging/main armhf r-cran-digest armhf 0.6.33-1 [185 kB]
Get:270 http://172.17.4.1/private trixie-staging/main armhf r-cran-rappdirs armhf 0.3.3-1 [47.3 kB]
Get:271 http://172.17.4.1/private trixie-staging/main armhf r-cran-xml2 armhf 1.3.5-1 [274 kB]
Get:272 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biomart all 2.58.0+dfsg-1 [449 kB]
Get:273 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomicranges armhf 1.54.1+dfsg-1 [1827 kB]
Get:274 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhtslib armhf 2.4.0+dfsg-1 [1190 kB]
Get:275 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rsamtools armhf 2.18.0+dfsg-1 [3497 kB]
Get:276 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrixstats armhf 1.1.0-1 [471 kB]
Get:277 http://172.17.4.1/private trixie-staging/main armhf r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
Get:278 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB]
Get:279 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-4-1 [3691 kB]
Get:280 http://172.17.4.1/private trixie-staging/main armhf r-cran-abind all 1.4-5-2 [64.6 kB]
Get:281 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4arrays armhf 1.2.0+dfsg-1 [511 kB]
Get:282 http://172.17.4.1/private trixie-staging/main armhf r-bioc-sparsearray armhf 1.2.2+dfsg-1 [1178 kB]
Get:283 http://172.17.4.1/private trixie-staging/main armhf r-bioc-delayedarray armhf 0.28.0+dfsg-1 [1792 kB]
Get:284 http://172.17.4.1/private trixie-staging/main armhf r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1139 kB]
Get:285 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomicalignments armhf 1.38.0-1 [2140 kB]
Get:286 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.18-2 [86.0 kB]
Get:287 http://172.17.4.1/private trixie-staging/main armhf r-cran-rjson armhf 0.2.21-1 [137 kB]
Get:288 http://172.17.4.1/private trixie-staging/main armhf r-cran-yaml armhf 2.3.7-1 [92.3 kB]
Get:289 http://172.17.4.1/private trixie-staging/main armhf r-cran-restfulr armhf 0.0.15-1 [348 kB]
Get:290 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rtracklayer armhf 1.62.0-1 [5060 kB]
Get:291 http://172.17.4.1/private trixie-staging/main armhf r-bioc-bsgenome all 1.70.1-1 [6976 kB]
Get:292 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomicfeatures all 1.54.1+dfsg-1 [1669 kB]
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Creating config file /etc/R/Renviron with new version
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Setting up r-cran-rappdirs (0.3.3-1) ...
Setting up r-cran-filelock (1.0.2-2) ...
Setting up r-bioc-genomeinfodbdata (1.2.10-1) ...
Setting up r-cran-littler (0.3.18-2) ...
Setting up r-cran-curl (5.1.0+dfsg-1) ...
Setting up r-cran-codetools (0.2-19-1) ...
Setting up r-bioc-biocgenerics (0.48.1-2) ...
Setting up r-cran-rlang (1.1.2-1) ...
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Setting up r-cran-sys (3.4.2-1) ...
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Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up r-cran-generics (0.1.3-1) ...
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Setting up r-cran-digest (0.6.33-1) ...
Setting up r-cran-yaml (2.3.7-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-xml2 (1.3.5-1) ...
Setting up r-cran-dbi (1.1.3-1) ...
Setting up r-cran-prettyunits (1.2.0-1) ...
Setting up r-cran-fansi (1.0.5-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-bit (4.0.5-1) ...
Setting up r-cran-cli (3.6.1-1) ...
Setting up gfortran (4:13.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up r-cran-lifecycle (1.0.4+dfsg-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
Setting up r-cran-askpass (1.2.0-1) ...
Setting up r-cran-fastmap (1.1.1-1) ...
Setting up r-cran-png (0.1-8-1) ...
Setting up r-bioc-biobase (2.62.0-1) ...
Setting up r-cran-jsonlite (1.8.8+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.4-1) ...
Setting up r-cran-stringi (1.8.2-1) ...
Setting up r-cran-cpp11 (0.4.6-1) ...
Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-cran-matrix (1.6-4-1) ...
Setting up r-cran-cachem (1.0.8-1) ...
Setting up r-bioc-iranges (2.36.0-1) ...
Setting up r-cran-rjson (0.2.21-1) ...
Setting up r-cran-rcurl (1.98-1.13+dfsg-1) ...
Setting up r-cran-restfulr (0.0.15-1) ...
Setting up r-cran-vctrs (0.6.4-1) ...
Setting up r-cran-pillar (1.9.0+dfsg-1) ...
Setting up r-cran-openssl (2.1.1+dfsg-2) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
Setting up r-cran-stringr (1.5.1-1) ...
Setting up r-bioc-biocparallel (1.36.0-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-bioc-rhtslib (2.4.0+dfsg-1) ...
Setting up r-cran-tibble (3.2.1+dfsg-2) ...
Setting up r-bioc-biocio (1.12.0+dfsg-1) ...
Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.38.1+dfsg-1) ...
Setting up r-cran-httr (1.4.7+dfsg-1) ...
Setting up r-cran-hms (1.1.3-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-purrr (1.0.2-1) ...
Setting up r-cran-blob (1.2.4-1) ...
Setting up r-bioc-xvector (0.42.0-1) ...
Setting up r-cran-dplyr (1.1.4-1) ...
Setting up dh-r (20231212) ...
Setting up r-cran-rsqlite (2.3.3-1) ...
Setting up r-cran-progress (1.2.2-2) ...
Setting up r-bioc-sparsearray (1.2.2+dfsg-1) ...
Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
Setting up r-bioc-biostrings (2.70.1-1) ...
Setting up r-cran-tidyr (1.3.0-1) ...
Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
Setting up r-cran-dbplyr (2.4.0+dfsg-1) ...
Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
Setting up r-bioc-biocfilecache (2.10.1+dfsg-1) ...
Setting up r-bioc-keggrest (1.42.0+dfsg-1) ...
Setting up r-bioc-annotationdbi (1.64.1-1) ...
Setting up r-bioc-biomart (2.58.0+dfsg-1) ...
Setting up r-bioc-genomicalignments (1.38.0-1) ...
Setting up r-bioc-rtracklayer (1.62.0-1) ...
Setting up r-bioc-genomicfeatures (1.54.1+dfsg-1) ...
Setting up r-bioc-bsgenome (1.70.1-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep  1 07:05:33 BST 2023 arm64 (aarch64)
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+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-variantannotation
Binary: r-bioc-variantannotation
Architecture: any
Version: 1.48.1-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/VariantAnnotation/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-variantannotation
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-variantannotation.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-matrixgenerics, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-summarizedexperiment, r-bioc-rsamtools, r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors, r-bioc-iranges, r-bioc-xvector, r-bioc-biostrings, r-bioc-annotationdbi, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-rhtslib (>= 1.99.3), libcurl4-openssl-dev | libcurl4-dev
Package-List:
 r-bioc-variantannotation deb gnu-r optional arch=any
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gpgv: Signature made Fri Dec  1 09:59:29 2023 UTC
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gpgv:                issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
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dpkg-source: info: extracting r-bioc-variantannotation in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-variantannotation_1.48.1.orig.tar.gz
dpkg-source: info: unpacking r-bioc-variantannotation_1.48.1-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying drop_tests_requiring_large_data_sets.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-9b421001-3325-4e9f-8253-39e64223fe2a
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-variantannotation
dpkg-buildpackage: info: source version 1.48.1-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-variantannotation/ -a -O--buildsystem=R
I: R Package: VariantAnnotation Version: 1.48.1
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Fri, 01 Dec 2023 10:52:30 +0100
	mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-variantannotation/usr/lib/R/site-library
	R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-variantannotation/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 01 Dec 2023 10:52:30 +0100'"
* installing *source* package ‘VariantAnnotation’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Raspbian 13.2.0-7+rpi1) 13.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c R_init_VariantAnnotation.c -o R_init_VariantAnnotation.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c dna_hash.c -o dna_hash.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c rle.c -o rle.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c strhash.c -o strhash.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c utilities.c -o utilities.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c vcffile.c -o vcffile.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c vcftype.c -o vcftype.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c writevcf.c -o writevcf.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o VariantAnnotation.so Biostrings_stubs.o IRanges_stubs.o R_init_VariantAnnotation.o XVector_stubs.o dna_hash.o rle.o strhash.o utilities.o vcffile.o vcftype.o writevcf.o /usr/lib/R/site-library/Rhtslib/usrlib/libhts.a -lcurl -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-variantannotation/usr/lib/R/site-library/00LOCK-r-bioc-variantannotation-1.48.1/00new/VariantAnnotation/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘tabulate’ in package ‘VariantAnnotation’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (VariantAnnotation)
W: Ignoring specified R dependency: R (>= 4.0.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.37.0)
I: Using r-bioc-matrixgenerics for Depends:MatrixGenerics
I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.15.2)
I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.41.5)
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.19.5)
I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.99.0)
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-annotationhub for Suggests:AnnotationHub
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene
W: Cannot find a debian package for Suggests:SNPlocs.Hsapiens.dbSNP144.GRCh37
W: Cannot find a debian package for Suggests:SIFT.Hsapiens.dbSNP132
W: Cannot find a debian package for Suggests:SIFT.Hsapiens.dbSNP137
W: Cannot find a debian package for Suggests:PolyPhen.Hsapiens.dbSNP131
I: Using r-bioc-snpstats for Suggests:snpStats
I: Using r-cran-ggplot2 for Suggests:ggplot2
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-cran-knitr for Suggests:knitr
I: Using r-cran-dbi for Imports:DBI
I: Using r-bioc-zlibbioc for Imports:zlibbioc
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.27.12)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.23.9)
I: Using r-bioc-xvector for Imports:XVector (>= 0.29.2)
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.57.2)
I: Using r-bioc-annotationdbi for Imports:AnnotationDbi (>= 1.27.9)
I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.39.7)
I: Using r-bioc-bsgenome for Imports:BSgenome (>= 1.47.3)
I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures (>= 1.31.3)
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: Using r-bioc-xvector for LinkingTo:XVector
I: Using r-bioc-biostrings for LinkingTo:Biostrings
I: Using r-bioc-rhtslib for LinkingTo:Rhtslib (>= 1.99.3)
I: BioConductor API version: r-api-bioc-3.18
I: Use r-bioc-variantannotation as Debian binary package for variables substitution
   dh_installdocs -a -O--buildsystem=R
   dh_installchangelogs -a -O--buildsystem=R
   dh_installsystemduser -a -O--buildsystem=R
   dh_perl -a -O--buildsystem=R
   dh_link -a -O--buildsystem=R
   dh_strip_nondeterminism -a -O--buildsystem=R
   dh_compress -a -O--buildsystem=R
   dh_fixperms -a -O--buildsystem=R
   dh_missing -a -O--buildsystem=R
   dh_dwz -a -O--buildsystem=R
   dh_strip -a -O--buildsystem=R
   dh_makeshlibs -a -O--buildsystem=R
   dh_shlibdeps -a -O--buildsystem=R
   dh_installdeb -a -O--buildsystem=R
   dh_gencontrol -a -O--buildsystem=R
   dh_md5sums -a -O--buildsystem=R
   dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-variantannotation-dbgsym' in '../r-bioc-variantannotation-dbgsym_1.48.1-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-variantannotation' in '../r-bioc-variantannotation_1.48.1-1_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../r-bioc-variantannotation_1.48.1-1_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../r-bioc-variantannotation_1.48.1-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-12-18T04:43:19Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-variantannotation_1.48.1-1_armhf.changes:
------------------------------------------------

Format: 1.8
Date: Fri, 01 Dec 2023 10:52:30 +0100
Source: r-bioc-variantannotation
Binary: r-bioc-variantannotation r-bioc-variantannotation-dbgsym
Architecture: armhf
Version: 1.48.1-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-bioc-variantannotation - BioConductor annotation of genetic variants
Changes:
 r-bioc-variantannotation (1.48.1-1) unstable; urgency=medium
 .
   * New upstream version
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Files:
 7e6b38f9445a488cbd3d0b607b7b4dc1 38044 debug optional r-bioc-variantannotation-dbgsym_1.48.1-1_armhf.deb
 758000544eec4cabeffb78761e642d37 12886 gnu-r optional r-bioc-variantannotation_1.48.1-1_armhf.buildinfo
 ccd09944a7da35b1e270bd8d59ea70c9 3454292 gnu-r optional r-bioc-variantannotation_1.48.1-1_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: r-bioc-variantannotation
Binary: r-bioc-variantannotation r-bioc-variantannotation-dbgsym
Architecture: armhf
Version: 1.48.1-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Mon, 18 Dec 2023 04:43:19 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-14),
 autotools-dev (= 20220109.1),
 base-files (= 13+rpi1),
 base-passwd (= 3.6.2),
 bash (= 5.2.15-2),
 binutils (= 2.41-6+rpi1),
 binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
 binutils-common (= 2.41-6+rpi1),
 bsdextrautils (= 2.39.3-2),
 bsdutils (= 1:2.39.3-2),
 build-essential (= 12.9),
 bzip2 (= 1.0.8-5+b2),
 ca-certificates (= 20230311),
 coreutils (= 9.1-1),
 cpp (= 4:13.2.0-1+rpi1),
 cpp-12 (= 12.3.0-10+rpi1),
 cpp-13 (= 13.2.0-7+rpi1),
 dash (= 0.5.12-6),
 dctrl-tools (= 2.24-3),
 debconf (= 1.5.82),
 debhelper (= 13.11.8),
 debianutils (= 5.14),
 dh-autoreconf (= 20),
 dh-r (= 20231212),
 dh-strip-nondeterminism (= 1.13.1-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.1+rpi1),
 dpkg-dev (= 1.22.1+rpi1),
 dwz (= 0.15-1),
 file (= 1:5.45-2),
 findutils (= 4.9.0-5),
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 g++ (= 4:13.2.0-1+rpi1),
 g++-13 (= 13.2.0-7+rpi1),
 gcc (= 4:13.2.0-1+rpi1),
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 gcc-12-base (= 12.3.0-10+rpi1),
 gcc-13 (= 13.2.0-7+rpi1),
 gcc-13-base (= 13.2.0-7+rpi1),
 gettext (= 0.21-14),
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 libdevel-globaldestruction-perl (= 0.14-4),
 libdevel-overloadinfo-perl (= 0.007-1),
 libdevel-stacktrace-perl (= 2.0400-2),
 libdist-checkconflicts-perl (= 0.11-2),
 libdpkg-perl (= 1.22.1+rpi1),
 libdynaloader-functions-perl (= 0.003-3),
 libelf1 (= 0.188-2.1+rpi1),
 libencode-locale-perl (= 1.05-3),
 libeval-closure-perl (= 0.14-3),
 libexpat1 (= 2.5.0-2),
 libffi8 (= 3.4.4-1),
 libfile-stripnondeterminism-perl (= 1.13.1-1),
 libfile-which-perl (= 1.27-2),
 libfontconfig1 (= 2.14.2-6),
 libfreetype6 (= 2.13.2+dfsg-1),
 libfribidi0 (= 1.0.13-3),
 libgcc-12-dev (= 12.3.0-10+rpi1),
 libgcc-13-dev (= 13.2.0-7+rpi1),
 libgcc-s1 (= 13.2.0-7+rpi1),
 libgcrypt20 (= 1.10.2-3),
 libgdbm-compat4 (= 1.23-3),
 libgdbm6 (= 1.23-3),
 libgfortran-13-dev (= 13.2.0-7+rpi1),
 libgfortran5 (= 13.2.0-7+rpi1),
 libglib2.0-0 (= 2.78.3-1),
 libgmp10 (= 2:6.3.0+dfsg-2),
 libgnutls30 (= 3.8.1-4),
 libgomp1 (= 13.2.0-7+rpi1),
 libgpg-error0 (= 1.47-2),
 libgraphite2-3 (= 1.3.14-1),
 libgssapi-krb5-2 (= 1.20.1-4),
 libharfbuzz0b (= 8.0.1-1),
 libhogweed6 (= 3.9.1-2),
 libhttp-date-perl (= 6.06-1),
 libhttp-message-perl (= 6.45-1),
 libice6 (= 2:1.0.10-1),
 libicu-dev (= 72.1-4),
 libicu72 (= 72.1-4),
 libidn2-0 (= 2.3.4-1),
 libio-html-perl (= 1.004-3),
 libisl23 (= 0.26-3),
 libjansson4 (= 2.14-2),
 libjbig0 (= 2.1-6.1),
 libjpeg-dev (= 1:2.1.5-2),
 libjpeg62-turbo (= 1:2.1.5-2),
 libjpeg62-turbo-dev (= 1:2.1.5-2),
 libjs-jquery (= 3.6.1+dfsg+~3.5.14-1),
 libk5crypto3 (= 1.20.1-4),
 libkeyutils1 (= 1.6.3-2),
 libkrb5-3 (= 1.20.1-4),
 libkrb5support0 (= 1.20.1-4),
 liblapack-dev (= 3.11.0-2),
 liblapack3 (= 3.11.0-2),
 libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1),
 liblerc4 (= 4.0.0+ds-4),
 liblwp-mediatypes-perl (= 6.04-2),
 liblz4-1 (= 1.9.4-1+rpi1+b1),
 liblzma-dev (= 5.4.5-0.1),
 liblzma5 (= 5.4.5-0.1),
 libmagic-mgc (= 1:5.45-2),
 libmagic1 (= 1:5.45-2),
 libmd0 (= 1.1.0-1),
 libmodule-implementation-perl (= 0.09-2),
 libmodule-runtime-conflicts-perl (= 0.003-2),
 libmodule-runtime-perl (= 0.016-2),
 libmoose-perl (= 2.2206-1),
 libmount1 (= 2.39.3-2),
 libmpc3 (= 1.3.1-1),
 libmpfr6 (= 4.2.1-1),
 libmro-compat-perl (= 0.15-2),
 libnamespace-clean-perl (= 0.27-2),
 libncurses-dev (= 6.4+20231209-1),
 libncurses6 (= 6.4+20231209-1),
 libncursesw6 (= 6.4+20231209-1),
 libnettle8 (= 3.9.1-2),
 libnghttp2-14 (= 1.58.0-1),
 libnsl-dev (= 1.3.0-2),
 libnsl2 (= 1.3.0-2),
 libp11-kit0 (= 0.25.0-5),
 libpackage-deprecationmanager-perl (= 0.18-1),
 libpackage-stash-perl (= 0.40-1),
 libpackage-stash-xs-perl (= 0.30-1+b1),
 libpam-modules (= 1.5.2-9.1),
 libpam-modules-bin (= 1.5.2-9.1),
 libpam-runtime (= 1.5.2-9.1),
 libpam0g (= 1.5.2-9.1),
 libpango-1.0-0 (= 1.51.0+ds-3),
 libpangocairo-1.0-0 (= 1.51.0+ds-3),
 libpangoft2-1.0-0 (= 1.51.0+ds-3),
 libpaper-utils (= 1.1.29),
 libpaper1 (= 1.1.29),
 libparams-classify-perl (= 0.015-2+b1),
 libparams-util-perl (= 1.102-2+b1),
 libpcre2-16-0 (= 10.42-4),
 libpcre2-32-0 (= 10.42-4),
 libpcre2-8-0 (= 10.42-4),
 libpcre2-dev (= 10.42-4),
 libpcre2-posix3 (= 10.42-4),
 libperl5.36 (= 5.36.0-9),
 libpipeline1 (= 1.5.7-1),
 libpixman-1-0 (= 0.42.2-1),
 libpkgconf3 (= 1.8.1-1),
 libpng-dev (= 1.6.40-2),
 libpng16-16 (= 1.6.40-2),
 libpsl5 (= 0.21.2-1+b1),
 libreadline-dev (= 8.2-3),
 libreadline8 (= 8.2-3),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libsasl2-2 (= 2.1.28+dfsg1-3),
 libsasl2-modules-db (= 2.1.28+dfsg1-3),
 libseccomp2 (= 2.5.4-1+rpi1+b1),
 libselinux1 (= 3.5-1),
 libsframe1 (= 2.41-6+rpi1),
 libsharpyuv0 (= 1.3.2-0.3),
 libsm6 (= 2:1.2.3-1),
 libsmartcols1 (= 2.39.3-2),
 libssh2-1 (= 1.11.0-3),
 libssl3 (= 3.0.11-1),
 libstdc++-12-dev (= 12.3.0-10+rpi1),
 libstdc++-13-dev (= 13.2.0-7+rpi1),
 libstdc++6 (= 13.2.0-7+rpi1),
 libsub-exporter-perl (= 0.990-1),
 libsub-exporter-progressive-perl (= 0.001013-3),
 libsub-identify-perl (= 0.14-3),
 libsub-install-perl (= 0.929-1),
 libsub-name-perl (= 0.27-1),
 libsub-override-perl (= 0.10-1),
 libswitch-perl (= 2.17-3),
 libsystemd0 (= 254.5-1+rpi1),
 libtasn1-6 (= 4.19.0-3),
 libtcl8.6 (= 8.6.13+dfsg-2),
 libthai-data (= 0.1.29-1),
 libthai0 (= 0.1.29-1),
 libtiff6 (= 4.5.1+git230720-3),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.4+20231209-1),
 libtirpc-common (= 1.3.3+ds-1),
 libtirpc-dev (= 1.3.3+ds-1),
 libtirpc3 (= 1.3.3+ds-1),
 libtk8.6 (= 8.6.13-2),
 libtool (= 2.4.7-7),
 libtry-tiny-perl (= 0.31-2),
 libubsan1 (= 13.2.0-7+rpi1),
 libuchardet0 (= 0.0.8-1),
 libudev1 (= 254.5-1+rpi1),
 libunistring5 (= 1.1-2),
 liburi-perl (= 5.21-1),
 libuuid1 (= 2.39.3-2),
 libvariable-magic-perl (= 0.63-1+b1),
 libwebp7 (= 1.3.2-0.3),
 libwww-curl-perl (= 4.17-10),
 libwww-curl-simple-perl (= 0.100191-3),
 libx11-6 (= 2:1.8.7-1),
 libx11-data (= 2:1.8.7-1),
 libxau6 (= 1:1.0.9-1),
 libxcb-render0 (= 1.15-1),
 libxcb-shm0 (= 1.15-1),
 libxcb1 (= 1.15-1),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.4-1),
 libxft2 (= 2.3.6-1),
 libxml2 (= 2.9.14+dfsg-1.3),
 libxmuu1 (= 2:1.1.3-3),
 libxrender1 (= 1:0.9.10-1.1),
 libxss1 (= 1:1.2.3-1),
 libxt6 (= 1:1.2.1-1.1),
 libzstd1 (= 1.5.5+dfsg2-2),
 linux-libc-dev (= 6.5.6-1+rpi1),
 login (= 1:4.13+dfsg1-3),
 lsb-base (= 11.6+rpi1),
 m4 (= 1.4.19-4),
 make (= 4.3-4.1),
 man-db (= 2.12.0-1),
 mawk (= 1.3.4.20230808-1),
 ncurses-base (= 6.4+20231209-1),
 ncurses-bin (= 6.4+20231209-1),
 node-html5shiv (= 3.7.3+dfsg-5),
 openssl (= 3.0.11-1),
 patch (= 2.7.6-7),
 perl (= 5.36.0-9),
 perl-base (= 5.36.0-9),
 perl-modules-5.36 (= 5.36.0-9),
 pkg-config (= 1.8.1-1),
 pkgconf (= 1.8.1-1),
 pkgconf-bin (= 1.8.1-1),
 po-debconf (= 1.0.21+nmu1),
 r-base-core (= 4.3.2-1),
 r-base-dev (= 4.3.2-1),
 r-bioc-annotationdbi (= 1.64.1-1),
 r-bioc-biobase (= 2.62.0-1),
 r-bioc-biocfilecache (= 2.10.1+dfsg-1),
 r-bioc-biocgenerics (= 0.48.1-2),
 r-bioc-biocio (= 1.12.0+dfsg-1),
 r-bioc-biocparallel (= 1.36.0-1),
 r-bioc-biomart (= 2.58.0+dfsg-1),
 r-bioc-biostrings (= 2.70.1-1),
 r-bioc-bsgenome (= 1.70.1-1),
 r-bioc-delayedarray (= 0.28.0+dfsg-1),
 r-bioc-genomeinfodb (= 1.38.1+dfsg-1),
 r-bioc-genomeinfodbdata (= 1.2.10-1),
 r-bioc-genomicalignments (= 1.38.0-1),
 r-bioc-genomicfeatures (= 1.54.1+dfsg-1),
 r-bioc-genomicranges (= 1.54.1+dfsg-1),
 r-bioc-iranges (= 2.36.0-1),
 r-bioc-keggrest (= 1.42.0+dfsg-1),
 r-bioc-matrixgenerics (= 1.14.0-1),
 r-bioc-rhtslib (= 2.4.0+dfsg-1),
 r-bioc-rsamtools (= 2.18.0+dfsg-1),
 r-bioc-rtracklayer (= 1.62.0-1),
 r-bioc-s4arrays (= 1.2.0+dfsg-1),
 r-bioc-s4vectors (= 0.40.2+dfsg-1),
 r-bioc-sparsearray (= 1.2.2+dfsg-1),
 r-bioc-summarizedexperiment (= 1.32.0+dfsg-1),
 r-bioc-xvector (= 0.42.0-1),
 r-bioc-zlibbioc (= 1.48.0+dfsg-1),
 r-cran-abind (= 1.4-5-2),
 r-cran-askpass (= 1.2.0-1),
 r-cran-bh (= 1.81.0-1),
 r-cran-bit (= 4.0.5-1),
 r-cran-bit64 (= 4.0.5-1),
 r-cran-bitops (= 1.0-7-1),
 r-cran-blob (= 1.2.4-1),
 r-cran-cachem (= 1.0.8-1),
 r-cran-cli (= 3.6.1-1),
 r-cran-codetools (= 0.2-19-1),
 r-cran-cpp11 (= 0.4.6-1),
 r-cran-crayon (= 1.5.2-1),
 r-cran-curl (= 5.1.0+dfsg-1),
 r-cran-dbi (= 1.1.3-1),
 r-cran-dbplyr (= 2.4.0+dfsg-1),
 r-cran-digest (= 0.6.33-1),
 r-cran-dplyr (= 1.1.4-1),
 r-cran-fansi (= 1.0.5-1),
 r-cran-fastmap (= 1.1.1-1),
 r-cran-filelock (= 1.0.2-2),
 r-cran-formatr (= 1.14-1),
 r-cran-futile.logger (= 1.4.3-4),
 r-cran-futile.options (= 1.0.1-3),
 r-cran-generics (= 0.1.3-1),
 r-cran-glue (= 1.6.2-1),
 r-cran-hms (= 1.1.3-1),
 r-cran-httr (= 1.4.7+dfsg-1),
 r-cran-jsonlite (= 1.8.8+dfsg-1),
 r-cran-lambda.r (= 1.2.4-2),
 r-cran-lattice (= 0.22-5-1),
 r-cran-lifecycle (= 1.0.4+dfsg-1),
 r-cran-littler (= 0.3.18-2),
 r-cran-magrittr (= 2.0.3-1),
 r-cran-matrix (= 1.6-4-1),
 r-cran-matrixstats (= 1.1.0-1),
 r-cran-memoise (= 2.0.1-1),
 r-cran-mime (= 0.12-1),
 r-cran-openssl (= 2.1.1+dfsg-2),
 r-cran-pillar (= 1.9.0+dfsg-1),
 r-cran-pkgconfig (= 2.0.3-2),
 r-cran-plogr (= 0.2.0-3),
 r-cran-png (= 0.1-8-1),
 r-cran-prettyunits (= 1.2.0-1),
 r-cran-progress (= 1.2.2-2),
 r-cran-purrr (= 1.0.2-1),
 r-cran-r6 (= 2.5.1-1),
 r-cran-rappdirs (= 0.3.3-1),
 r-cran-rcurl (= 1.98-1.13+dfsg-1),
 r-cran-restfulr (= 0.0.15-1),
 r-cran-rjson (= 0.2.21-1),
 r-cran-rlang (= 1.1.2-1),
 r-cran-rsqlite (= 2.3.3-1),
 r-cran-snow (= 1:0.4.4-2),
 r-cran-stringi (= 1.8.2-1),
 r-cran-stringr (= 1.5.1-1),
 r-cran-sys (= 3.4.2-1),
 r-cran-tibble (= 3.2.1+dfsg-2),
 r-cran-tidyr (= 1.3.0-1),
 r-cran-tidyselect (= 1.2.0+dfsg-1),
 r-cran-utf8 (= 1.2.4-1),
 r-cran-vctrs (= 0.6.4-1),
 r-cran-withr (= 2.5.0-1),
 r-cran-xml (= 3.99-0.16-1),
 r-cran-xml2 (= 1.3.5-1),
 r-cran-yaml (= 2.3.7-1),
 readline-common (= 8.2-3),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-1),
 sensible-utils (= 0.0.20),
 sysvinit-utils (= 3.08-3),
 tar (= 1.34+dfsg-1.2),
 tzdata (= 2023c-10),
 ucf (= 3.0043+nmu1),
 unzip (= 6.0-28),
 usr-is-merged (= 37),
 util-linux (= 2.39.3-2),
 x11-common (= 1:7.7+23),
 xauth (= 1:1.1.2-1),
 xdg-utils (= 1.1.3-4.1),
 xz-utils (= 5.4.5-0.1),
 zip (= 3.0-13),
 zlib1g (= 1:1.2.13.dfsg-3),
 zlib1g-dev (= 1:1.2.13.dfsg-3)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 SOURCE_DATE_EPOCH="1701424350"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-variantannotation-dbgsym_1.48.1-1_armhf.deb
--------------------------------------------------

 new Debian package, version 2.0.
 size 38044 bytes: control archive=548 bytes.
     434 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: r-bioc-variantannotation-dbgsym
 Source: r-bioc-variantannotation
 Version: 1.48.1-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 108
 Depends: r-bioc-variantannotation (= 1.48.1-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-variantannotation
 Build-Ids: e0a87d677357d369ce43b401b944862649db8dc9

drwxr-xr-x root/root         0 2023-12-01 09:52 ./
drwxr-xr-x root/root         0 2023-12-01 09:52 ./usr/
drwxr-xr-x root/root         0 2023-12-01 09:52 ./usr/lib/
drwxr-xr-x root/root         0 2023-12-01 09:52 ./usr/lib/debug/
drwxr-xr-x root/root         0 2023-12-01 09:52 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2023-12-01 09:52 ./usr/lib/debug/.build-id/e0/
-rw-r--r-- root/root     99456 2023-12-01 09:52 ./usr/lib/debug/.build-id/e0/a87d677357d369ce43b401b944862649db8dc9.debug
drwxr-xr-x root/root         0 2023-12-01 09:52 ./usr/share/
drwxr-xr-x root/root         0 2023-12-01 09:52 ./usr/share/doc/
lrwxrwxrwx root/root         0 2023-12-01 09:52 ./usr/share/doc/r-bioc-variantannotation-dbgsym -> r-bioc-variantannotation


r-bioc-variantannotation_1.48.1-1_armhf.deb
-------------------------------------------

 new Debian package, version 2.0.
 size 3454292 bytes: control archive=2964 bytes.
    1165 bytes,    13 lines      control
    7338 bytes,    73 lines      md5sums
 Package: r-bioc-variantannotation
 Version: 1.48.1-1
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 6031
 Depends: r-api-4.0, r-api-bioc-3.18, r-bioc-biocgenerics (>= 0.37.0), r-bioc-matrixgenerics, r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.41.5), r-bioc-summarizedexperiment (>= 1.19.5), r-bioc-rsamtools (>= 1.99.0), r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-xvector (>= 0.29.2), r-bioc-biostrings (>= 2.57.2), r-bioc-annotationdbi (>= 1.27.9), r-bioc-rtracklayer (>= 1.39.7), r-bioc-bsgenome (>= 1.47.3), r-bioc-genomicfeatures (>= 1.31.3), r-bioc-rhtslib (>= 1.99.3), libc6 (>= 2.34), libcurl4 (>= 7.18.0)
 Suggests: r-cran-runit, r-bioc-annotationhub, r-bioc-snpstats, r-cran-ggplot2, r-bioc-biocstyle, r-cran-knitr
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/VariantAnnotation/
 Description: BioConductor annotation of genetic variants
  This BioConductor package provides R functions to annotate variants,
  compute amino acid coding changess and to predict coding outcomes.

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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 13308
Build-Time: 99
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 169
Job: r-bioc-variantannotation_1.48.1-1
Machine Architecture: arm64
Package: r-bioc-variantannotation
Package-Time: 277
Source-Version: 1.48.1-1
Space: 13308
Status: successful
Version: 1.48.1-1
--------------------------------------------------------------------------------
Finished at 2023-12-18T04:43:19Z
Build needed 00:04:37, 13308k disk space
Raspbian Package Auto-Building

Build log for r-bioc-variantannotation (1.48.1-1) on armhf
