r-bioc-variantannotation →
1.44.1-1 →
armhf → 2023-03-02 05:14:24
sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019
+==============================================================================+
| r-bioc-variantannotation 1.44.1-1 (armhf) Thu, 02 Mar 2023 04:38:19 +0000 |
+==============================================================================+
Package: r-bioc-variantannotation
Version: 1.44.1-1
Source Version: 1.44.1-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/bookworm-staging-armhf-sbuild-e684d609-ec70-46a1-853a-1e65a94f6387' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-variantannotation-xs0WiZ/resolver-5s9VD1' with '<<RESOLVERDIR>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.7 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.5 MB]
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Reading package lists...
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-variantannotation' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-variantannotation.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-variantannotation.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1740 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-variantannotation 1.44.1-1 (dsc) [2676 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-variantannotation 1.44.1-1 (tar) [1730 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-variantannotation 1.44.1-1 (diff) [7860 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-variantannotation-xs0WiZ/r-bioc-variantannotation-1.44.1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-variantannotation-xs0WiZ' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-matrixgenerics, r-bioc-genomeinfodb, r-bioc-genomicranges (>= 1.41.5), r-bioc-summarizedexperiment (>= 1.19.5), r-bioc-rsamtools (>= 1.99.0), r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-xvector (>= 0.29.2), r-bioc-biostrings (>= 2.57.2), r-bioc-annotationdbi, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-rhtslib (>= 1.99.3), libcurl4-openssl-dev | libcurl4-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-matrixgenerics, r-bioc-genomeinfodb, r-bioc-genomicranges (>= 1.41.5), r-bioc-summarizedexperiment (>= 1.19.5), r-bioc-rsamtools (>= 1.99.0), r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-xvector (>= 0.29.2), r-bioc-biostrings (>= 2.57.2), r-bioc-annotationdbi, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-rhtslib (>= 1.99.3), libcurl4-openssl-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
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Reading package lists...
Reading package lists...
Install main build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
krb5-locales libpam-cap
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-jquery liblapack-dev liblapack3 liblerc4
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5 libreadline-dev
libregexp-ipv6-perl librtmp1 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db node-html5shiv openssl pkg-config pkgconf
pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-annotationdbi
r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib
r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass
r-cran-assertthat r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops
r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11
r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest
r-cran-dplyr r-cran-ellipsis r-cran-fansi r-cran-fastmap r-cran-filelock
r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics
r-cran-glue r-cran-hms r-cran-httr r-cran-jsonlite r-cran-lambda.r
r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix
r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar
r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits
r-cran-progress r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp
r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite
r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble
r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml
r-cran-xml2 r-cran-yaml ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc debtags dh-make
postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc
libboost-doc libboost1.74-doc libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
libcurl4-doc libidn11-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
libssl-dev low-memory-monitor icu-doc liblzma-doc ncurses-doc
libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
www-browser nodejs libmail-box-perl elpa-ess r-doc-info | r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-bioc-go.db
r-cran-runit r-bioc-org.hs.eg.db r-bioc-graph r-bioc-biocstyle r-cran-knitr
r-bioc-all r-cran-testthat r-cran-rmarkdown r-bioc-affy r-bioc-deseq2
r-bioc-annotate r-cran-foreach r-cran-batchjobs r-cran-bbmisc
r-cran-doparallel r-cran-rmpi r-bioc-variantannotation r-bioc-shortread
r-cran-batchtools r-cran-data.table r-cran-mockery r-cran-webmockr
r-cran-biocmanager r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr
r-bioc-delayedmatrixstats r-bioc-edger r-bioc-ensembldb
r-bioc-annotationfilter r-cran-markdown r-bioc-gviz r-bioc-annotationhub
r-bioc-dexseq r-bioc-sparsematrixstats r-bioc-limma r-bioc-rhdf5 r-cran-covr
r-cran-roxygen2 r-cran-ff r-cran-callr r-cran-htmltools r-cran-htmlwidgets
r-cran-processx r-cran-ps r-cran-rprojroot r-cran-rstudioapi r-cran-whoami
r-cran-bench r-cran-desc r-cran-ggplot2 r-cran-scales r-cran-spelling
r-cran-rmysql r-cran-unitizer r-cran-shiny r-cran-forcats r-cran-r.utils
r-cran-waldo r-cran-lubridate r-cran-httpuv r-cran-jpeg r-cran-readr
r-cran-r.rsp r-cran-sf r-cran-lintr r-cran-tidyverse r-cran-getopt
r-cran-base64enc r-cran-r.devices r-cran-formattable r-cran-nanotime
r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr
r-cran-inline r-cran-fs r-cran-usethis r-cran-gert r-cran-gh r-cran-rvest
r-cran-rlecuyer r-cran-brio r-cran-evaluate r-cran-pkgbuild r-cran-pkgload
r-cran-tidyr r-cran-pkgdown r-cran-zeallot
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs javascript-common
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-bioc-biovizbase
r-cran-testthat r-cran-mockery r-cran-decor r-cran-knitr r-cran-brio
r-cran-httpuv r-cran-webutils r-cran-rmysql r-cran-rpostgresql r-cran-tidyr
r-cran-bench r-cran-broom r-cran-callr r-cran-covr r-cran-ggplot2
r-cran-lobstr r-cran-rmarkdown r-cran-testit r-cran-survival r-cran-pkgload
r-cran-sp r-cran-runit r-cran-sodium r-cran-lubridate r-cran-dbitest
r-cran-htmltools r-cran-htmlwidgets r-cran-data.table r-cran-mockr
r-cran-formattable r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl
libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl
libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
libdevel-overloadinfo-perl libdevel-stacktrace-perl
libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
libencode-locale-perl libeval-closure-perl libexpat1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev libjs-jquery liblapack-dev liblapack3 liblerc4
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5 libreadline-dev
libregexp-ipv6-perl librtmp1 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 littler m4 man-db node-html5shiv openssl pkg-config pkgconf
pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-annotationdbi
r-bioc-biobase r-bioc-biocfilecache r-bioc-biocgenerics r-bioc-biocio
r-bioc-biocparallel r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
r-bioc-iranges r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib
r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass
r-cran-assertthat r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops
r-cran-blob r-cran-cachem r-cran-cli r-cran-codetools r-cran-cpp11
r-cran-crayon r-cran-curl r-cran-dbi r-cran-dbplyr r-cran-digest
r-cran-dplyr r-cran-ellipsis r-cran-fansi r-cran-fastmap r-cran-filelock
r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-generics
r-cran-glue r-cran-hms r-cran-httr r-cran-jsonlite r-cran-lambda.r
r-cran-lattice r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-matrix
r-cran-matrixstats r-cran-memoise r-cran-mime r-cran-openssl r-cran-pillar
r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-png r-cran-prettyunits
r-cran-progress r-cran-purrr r-cran-r6 r-cran-rappdirs r-cran-rcpp
r-cran-rcurl r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite
r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tibble
r-cran-tidyselect r-cran-utf8 r-cran-vctrs r-cran-withr r-cran-xml
r-cran-xml2 r-cran-yaml sbuild-build-depends-main-dummy ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
0 upgraded, 269 newly installed, 0 to remove and 3 not upgraded.
Need to get 198 MB of archives.
After this operation, 576 MB of additional disk space will be used.
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Get:24 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1+b1 [571 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-11 [1204 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.4 [942 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-4 [329 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-4 [1067 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.14.1-4 [315 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.14.1-4 [366 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-2 [112 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.3-3 [292 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.3-3 [687 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-7 [482 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.51.0-1 [60.5 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.2-1 [57.5 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.87.0-2 [332 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.5-1+b1 [1203 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.14.1-4 [449 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 6.0.0+dfsg-3 [1894 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.12+ds-1 [186 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.12+ds-1 [40.5 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.12+ds-1 [30.1 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.4-0.1 [242 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libtiff6 armhf 4.5.0-5 [293 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.2.20221110-2 [25.6 MB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-14+rpi1 [285 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-14+rpi1 [7509 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.4-2 [80.2 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.4-2 [291 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.4-2 [932 B]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.2-1.3 [123 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.42-1 [210 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.42-1 [201 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.42-1 [55.1 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.42-1 [648 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-15 [234 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-15 [225 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-15 [141 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-15 [576 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-1 [901 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.39-2 [336 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.4.1-0.2 [246 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.2.20221110-2 [4492 B]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.17-1 [90.4 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.44-1 [81.7 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.113-1 [10.6 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.989-1 [50.5 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-2 [16.8 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2203-1 [794 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.87.0-2 [328 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20230121 [37.9 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0+ds1-20 [9510 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b4 [4824 B]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libcurl4-openssl-dev armhf 7.87.0-2 [410 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.17-1 [92.5 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf littler all 0.3.17-1 [14.4 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf node-html5shiv all 3.7.3+dfsg-5 [13.2 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.44.0-2 [600 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.58.0-2 [2111 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.36.1-1 [2037 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.32.0-1 [2214 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dbi all 1.1.3-1 [687 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit armhf 4.0.5-1 [1066 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rlang armhf 1.0.6-1 [1621 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cli armhf 3.6.0-1 [1278 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.5.2-1 [1338 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf r-cran-blob all 1.2.3-1 [49.5 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fastmap armhf 1.1.0-1 [63.1 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cachem armhf 1.0.6-1 [70.5 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.10-1 [2015 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rsqlite armhf 2.2.20-1 [1007 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf r-cran-curl armhf 5.0.0+dfsg-1 [171 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf r-cran-jsonlite armhf 1.8.4+dfsg-1 [439 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sys armhf 3.4.1-1 [42.4 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf r-cran-askpass armhf 1.1-2 [22.3 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf r-cran-openssl armhf 2.0.5+dfsg-1 [388 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf r-cran-httr all 1.4.4+dfsg-1 [467 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf r-cran-png armhf 0.1-8-1 [40.2 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.38.0-1 [606 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.10+dfsg-1 [782 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.34.9-1 [3938 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biostrings armhf 2.66.0-1 [13.8 MB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-keggrest all 1.38.0+dfsg-1 [179 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-annotationdbi all 1.60.0-1 [4696 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf r-cran-assertthat all 0.2.1-2 [56.5 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf r-cran-generics all 0.1.3-1 [81.4 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fansi armhf 1.0.4-1 [612 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.3-1 [129 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pillar all 1.8.1+dfsg-1 [463 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.1.8+dfsg-1 [516 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [222 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dplyr armhf 1.0.10-1 [1230 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf r-cran-purrr armhf 1.0.1-1 [508 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dbplyr all 2.3.0+dfsg-1 [1055 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rappdirs armhf 0.3.3-1 [47.3 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf r-cran-filelock armhf 1.0.2-2 [24.2 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocfilecache all 2.6.0+dfsg-2 [296 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocio all 1.8.0+dfsg-1 [201 kB]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf r-cran-formatr all 1.14-1 [152 kB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cpp11 all 0.4.3-1 [223 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocparallel armhf 1.32.5-1 [1315 kB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xml armhf 3.99-0.13-1 [1722 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf r-cran-hms all 1.1.2-1 [104 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf r-cran-prettyunits all 1.1.1-2 [39.1 kB]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf r-cran-progress all 1.2.2-2 [88.9 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.12-1 [830 kB]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringr all 1.5.0-1 [295 kB]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.31-1 [177 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xml2 armhf 1.3.3-1 [276 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biomart all 2.54.0+dfsg-1 [442 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicranges armhf 1.50.2+dfsg-1 [1798 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rhtslib armhf 2.0.0+dfsg-1 [1189 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rsamtools armhf 2.14.0-1 [3675 kB]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.63.0-1 [453 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-matrixgenerics all 1.10.0-1 [302 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.5-3-1 [3701 kB]
Get:261 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-delayedarray armhf 0.24.0+dfsg-1 [1925 kB]
Get:262 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB]
Get:263 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicalignments armhf 1.34.0-1 [2109 kB]
Get:264 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rjson armhf 0.2.21-1 [137 kB]
Get:265 http://172.17.4.1/private bookworm-staging/main armhf r-cran-yaml armhf 2.3.7-1 [92.3 kB]
Get:266 http://172.17.4.1/private bookworm-staging/main armhf r-cran-restfulr armhf 0.0.15-1 [348 kB]
Get:267 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rtracklayer armhf 1.58.0-1 [5072 kB]
Get:268 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-bsgenome all 1.66.2-1 [6993 kB]
Get:269 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicfeatures all 1.50.4+dfsg-1 [1676 kB]
debconf: delaying package configuration, since apt-utils is not installed
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4-2) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-11) ...
Setting up libpcre2-dev:armhf (10.42-1) ...
Setting up libtool (2.4.7-5) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up libpcre3-dev:armhf (2:8.39-15) ...
Setting up fontconfig-config (2.14.1-4) ...
Setting up libpng-dev:armhf (1.6.39-2) ...
Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (7.87.0-2) ...
Setting up libgfortran-12-dev:armhf (12.2.0-14+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.3) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up gfortran-12 (12.2.0-14+rpi1) ...
Setting up libfreetype6:armhf (2.12.1+dfsg-4) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.113-1) ...
Setting up pkg-config:armhf (1.8.1-1) ...
Setting up dh-strip-nondeterminism (1.13.1-1) ...
Setting up dwz (0.15-1) ...
Setting up groff-base (1.22.4-9) ...
Setting up libncurses5-dev:armhf (6.4-2) ...
Setting up libcurl4:armhf (7.87.0-2) ...
Setting up libx11-6:armhf (2:1.8.3-3) ...
Setting up libharfbuzz0b:armhf (6.0.0+dfsg-3) ...
Setting up libmro-compat-perl (0.15-2) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.989-1) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up man-db (2.11.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up gfortran (4:12.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libcurl4-openssl-dev:armhf (7.87.0-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up xauth (1:1.1.2-1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up debhelper (13.11.4) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-2) ...
Setting up libpackage-deprecationmanager-perl (0.17-2) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up libmoose-perl:armhf (2.2203-1) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for libc-bin (2.36-8+rpi1) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.14.1-4) ...
Setting up fontconfig (2.14.1-4) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up libpango-1.0-0:armhf (1.50.12+ds-1) ...
Setting up libcairo2:armhf (1.16.0-7) ...
Setting up libpangoft2-1.0-0:armhf (1.50.12+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.12+ds-1) ...
Setting up r-base-core (4.2.2.20221110-2) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.20-45-3) ...
Setting up r-cran-formatr (1.14-1) ...
Setting up r-cran-xml (3.99-0.13-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-cran-rappdirs (0.3.3-1) ...
Setting up r-cran-filelock (1.0.2-2) ...
Setting up r-bioc-genomeinfodbdata (1.2.9-1) ...
Setting up r-cran-littler (0.3.17-1) ...
Setting up r-cran-rcpp (1.0.10-1) ...
Setting up r-cran-curl (5.0.0+dfsg-1) ...
Setting up r-cran-codetools (0.2-19-1) ...
Setting up r-bioc-biocgenerics (0.44.0-2) ...
Setting up r-cran-rlang (1.0.6-1) ...
Setting up r-cran-matrixstats (0.63.0-1) ...
Setting up r-base-dev (4.2.2.20221110-2) ...
Setting up r-cran-assertthat (0.2.1-2) ...
Setting up littler (0.3.17-1) ...
Setting up r-bioc-matrixgenerics (1.10.0-1) ...
Setting up r-cran-sys (3.4.1-1) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-mime (0.12-1) ...
Setting up r-cran-generics (0.1.3-1) ...
Setting up r-cran-digest (0.6.31-1) ...
Setting up r-cran-yaml (2.3.7-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-xml2 (1.3.3-1) ...
Setting up r-cran-dbi (1.1.3-1) ...
Setting up r-cran-prettyunits (1.1.1-2) ...
Setting up r-cran-fansi (1.0.4-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-bit (4.0.5-1) ...
Setting up r-cran-cli (3.6.0-1) ...
Setting up r-cran-lifecycle (1.0.3+dfsg-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ...
Setting up r-cran-askpass (1.1-2) ...
Setting up r-cran-fastmap (1.1.0-1) ...
Setting up r-cran-png (0.1-8-1) ...
Setting up r-bioc-biobase (2.58.0-2) ...
Setting up r-cran-jsonlite (1.8.4+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.3-1) ...
Setting up r-cran-stringi (1.7.12-1) ...
Setting up r-cran-cpp11 (0.4.3-1) ...
Setting up r-bioc-s4vectors (0.36.1-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-cran-matrix (1.5-3-1) ...
Setting up r-cran-cachem (1.0.6-1) ...
Setting up r-bioc-iranges (2.32.0-1) ...
Setting up dh-r (20230121) ...
Setting up r-cran-rjson (0.2.21-1) ...
Setting up r-cran-rcurl (1.98-1.10+dfsg-1) ...
Setting up r-cran-restfulr (0.0.15-1) ...
Setting up r-cran-vctrs (0.5.2-1) ...
Setting up r-bioc-delayedarray (0.24.0+dfsg-1) ...
Setting up r-cran-pillar (1.8.1+dfsg-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-openssl (2.0.5+dfsg-1) ...
Setting up r-cran-stringr (1.5.0-1) ...
Setting up r-bioc-biocparallel (1.32.5-1) ...
Setting up r-bioc-rhtslib (2.0.0+dfsg-1) ...
Setting up r-cran-tibble (3.1.8+dfsg-1) ...
Setting up r-bioc-biocio (1.8.0+dfsg-1) ...
Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.34.9-1) ...
Setting up r-cran-httr (1.4.4+dfsg-1) ...
Setting up r-cran-hms (1.1.2-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-purrr (1.0.1-1) ...
Setting up r-cran-blob (1.2.3-1) ...
Setting up r-bioc-xvector (0.38.0-1) ...
Setting up r-cran-dplyr (1.0.10-1) ...
Setting up r-cran-dbplyr (2.3.0+dfsg-1) ...
Setting up r-cran-rsqlite (2.2.20-1) ...
Setting up r-cran-progress (1.2.2-2) ...
Setting up r-bioc-biocfilecache (2.6.0+dfsg-2) ...
Setting up r-bioc-genomicranges (1.50.2+dfsg-1) ...
Setting up r-bioc-biostrings (2.66.0-1) ...
Setting up r-bioc-rsamtools (2.14.0-1) ...
Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ...
Setting up r-bioc-keggrest (1.38.0+dfsg-1) ...
Setting up r-bioc-annotationdbi (1.60.0-1) ...
Setting up r-bioc-biomart (2.54.0+dfsg-1) ...
Setting up r-bioc-genomicalignments (1.34.0-1) ...
Setting up r-bioc-rtracklayer (1.58.0-1) ...
Setting up r-bioc-genomicfeatures (1.50.4+dfsg-1) ...
Setting up r-bioc-bsgenome (1.66.2-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.36-8+rpi1) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.40-2+rpi1 dpkg-dev_1.21.20+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-8+rpi1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.0.12-1+rpi1+b1
Package versions: adduser_3.131 apt_2.5.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-11 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi1 binutils-arm-linux-gnueabihf_2.40-2+rpi1 binutils-common_2.40-2+rpi1 bsdextrautils_2.38.1-5 bsdutils_1:2.38.1-5 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-2 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.4 debianutils_5.7-0.4 dh-autoreconf_20 dh-r_20230121 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1 dpkg_1.21.20+rpi1 dpkg-dev_1.21.20+rpi1 dwz_0.15-1 e2fsprogs_1.46.6-1 fakeroot_1.29-1 file_1:5.44-3 findutils_4.9.0-4 fontconfig_2.14.1-4 fontconfig-config_2.14.1-4 fonts-dejavu-core_2.37-4 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-11 gettext-base_0.21-11 gfortran_4:12.2.0-1+rpi1 gfortran-12_12.2.0-14+rpi1 gnupg_2.2.40-1 gnupg-l10n_2.2.40-1 gnupg-utils_2.2.40-1 gpg_2.2.40-1 gpg-agent_2.2.40-1 gpg-wks-client_2.2.40-1 gpg-wks-server_2.2.40-1 gpgconf_2.2.40-1 gpgsm_2.2.40-1 gpgv_2.2.40-1 grep_3.8-5 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20221126-1 krb5-locales_1.20.1-1 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.5.6 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.5-5 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.40-2+rpi1 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.38.1-5 libboost-dev_1.74.0.3+b4 libboost1.74-dev_1.74.0+ds1-20 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-2 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.36-8+rpi1 libc-dev-bin_2.36-8+rpi1 libc6_2.36-8+rpi1 libc6-dev_2.36-8+rpi1 libcairo2_1.16.0-7 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-3 libcap2-bin_1:2.66-3 libcc1-0_12.2.0-14+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.46.6-1 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2+rpi1 libctf0_2.40-2+rpi1 libcurl3-gnutls_7.87.0-2 libcurl4_7.87.0-2 libcurl4-openssl-dev_7.87.0-2 libdata-optlist-perl_0.113-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.267 libdebhelper-perl_13.11.4 libdeflate0_1.14-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.21.20+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-1 libext2fs2_1.46.6-1 libfakeroot_1.29-1 libffi8_3.4.4-1 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libfontconfig1_2.14.1-4 libfreetype6_2.12.1+dfsg-4 libfribidi0_1.0.8-2.1 libgcc-12-dev_12.2.0-14+rpi1 libgcc-s1_12.2.0-14+rpi1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgfortran-12-dev_12.2.0-14+rpi1 libgfortran5_12.2.0-14+rpi1 libglib2.0-0_2.74.5-1+b1 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-5 libgomp1_12.2.0-14+rpi1 libgpg-error0_1.46-1 libgraphite2-3_1.3.14-1 libgssapi-krb5-2_1.20.1-1 libharfbuzz0b_6.0.0+dfsg-3 libhogweed6_3.8.1-2 libhttp-date-perl_6.05-2 libhttp-message-perl_6.44-1 libice6_2:1.0.10-1 libicu-dev_72.1-3 libicu72_72.1-3 libidn2-0_2.3.3-1 libio-html-perl_1.004-3 libisl23_0.25-1 libjansson4_2.14-2 libjbig0_2.1-6.1 libjpeg-dev_1:2.1.5-2 libjpeg62-turbo_1:2.1.5-2 libjpeg62-turbo-dev_1:2.1.5-2 libjs-jquery_3.6.1+dfsg+~3.5.14-1 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libksba8_1.6.3-2 liblapack-dev_3.11.0-2 liblapack3_3.11.0-2 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r-bioc-genomicfeatures_1.50.4+dfsg-1 r-bioc-genomicranges_1.50.2+dfsg-1 r-bioc-iranges_2.32.0-1 r-bioc-keggrest_1.38.0+dfsg-1 r-bioc-matrixgenerics_1.10.0-1 r-bioc-rhtslib_2.0.0+dfsg-1 r-bioc-rsamtools_2.14.0-1 r-bioc-rtracklayer_1.58.0-1 r-bioc-s4vectors_0.36.1-1 r-bioc-summarizedexperiment_1.28.0+dfsg-1 r-bioc-xvector_0.38.0-1 r-bioc-zlibbioc_1.44.0+dfsg-1 r-cran-askpass_1.1-2 r-cran-assertthat_0.2.1-2 r-cran-bh_1.74.0-2 r-cran-bit_4.0.5-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-blob_1.2.3-1 r-cran-cachem_1.0.6-1 r-cran-cli_3.6.0-1 r-cran-codetools_0.2-19-1 r-cran-cpp11_0.4.3-1 r-cran-crayon_1.5.2-1 r-cran-curl_5.0.0+dfsg-1 r-cran-dbi_1.1.3-1 r-cran-dbplyr_2.3.0+dfsg-1 r-cran-digest_0.6.31-1 r-cran-dplyr_1.0.10-1 r-cran-ellipsis_0.3.2-2 r-cran-fansi_1.0.4-1 r-cran-fastmap_1.1.0-1 r-cran-filelock_1.0.2-2 r-cran-formatr_1.14-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-generics_0.1.3-1 r-cran-glue_1.6.2-1 r-cran-hms_1.1.2-1 r-cran-httr_1.4.4+dfsg-1 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+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512
Format: 3.0 (quilt)
Source: r-bioc-variantannotation
Binary: r-bioc-variantannotation
Architecture: any
Version: 1.44.1-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/VariantAnnotation/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-variantannotation
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-variantannotation.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.37.0), r-bioc-matrixgenerics, r-bioc-genomeinfodb, r-bioc-genomicranges (>= 1.41.5), r-bioc-summarizedexperiment (>= 1.19.5), r-bioc-rsamtools (>= 1.99.0), r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-xvector (>= 0.29.2), r-bioc-biostrings (>= 2.57.2), r-bioc-annotationdbi, r-bioc-rtracklayer, r-bioc-bsgenome, r-bioc-genomicfeatures, r-bioc-rhtslib (>= 1.99.3), libcurl4-openssl-dev | libcurl4-dev
Package-List:
r-bioc-variantannotation deb gnu-r optional arch=any
Checksums-Sha1:
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Files:
4e4c9ebd75a47fb5eab735981d9a8e13 1729605 r-bioc-variantannotation_1.44.1.orig.tar.gz
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gpgv: Signature made Mon Feb 20 12:41:22 2023 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-variantannotation_1.44.1-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-variantannotation in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-variantannotation_1.44.1.orig.tar.gz
dpkg-source: info: unpacking r-bioc-variantannotation_1.44.1-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying drop_tests_requiring_large_data_sets.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=865c96f6dd224137939f1d5e40d6b4a3
JOURNAL_STREAM=8:37044
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-e684d609-ec70-46a1-853a-1e65a94f6387
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c21954
XDG_SESSION_TYPE=unspecified
dpkg-buildpackage
-----------------
Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-variantannotation
dpkg-buildpackage: info: source version 1.44.1-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-variantannotation/ -a -O--buildsystem=R
I: R Package: VariantAnnotation Version: 1.44.1
I: Building using R version 4.2.2.20221110-2
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 20 Feb 2023 13:32:10 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-variantannotation/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-variantannotation/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 20 Feb 2023 13:32:10 +0100'"
* installing *source* package ‘VariantAnnotation’ ...
** using staged installation
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_VariantAnnotation.c -o R_init_VariantAnnotation.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dna_hash.c -o dna_hash.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rle.c -o rle.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c strhash.c -o strhash.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c utilities.c -o utilities.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vcffile.c -o vcffile.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c vcftype.c -o vcftype.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include' -I'/usr/lib/R/site-library/Rhtslib/include' -fpic -g -O2 -ffile-prefix-map=/build/r-base-KCFL8O/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c writevcf.c -o writevcf.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o VariantAnnotation.so Biostrings_stubs.o IRanges_stubs.o R_init_VariantAnnotation.o XVector_stubs.o dna_hash.o rle.o strhash.o utilities.o vcffile.o vcftype.o writevcf.o /usr/lib/R/site-library/Rhtslib/usrlib/libhts.a -lcurl -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-variantannotation/usr/lib/R/site-library/00LOCK-r-bioc-variantannotation-1.44.1/00new/VariantAnnotation/libs
** R
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for ‘tabulate’ in package ‘VariantAnnotation’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (VariantAnnotation)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306.
W: Ignoring specified R dependency: R (>= 4.0.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.37.0)
I: Using r-bioc-matrixgenerics for Depends:MatrixGenerics
I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.15.2)
I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.41.5)
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 1.19.5)
I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.99.0)
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-annotationhub for Suggests:AnnotationHub
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene
W: Cannot find a debian package for Suggests:SNPlocs.Hsapiens.dbSNP144.GRCh37
W: Cannot find a debian package for Suggests:SIFT.Hsapiens.dbSNP132
W: Cannot find a debian package for Suggests:SIFT.Hsapiens.dbSNP137
W: Cannot find a debian package for Suggests:PolyPhen.Hsapiens.dbSNP131
I: Using r-bioc-snpstats for Suggests:snpStats
I: Using r-cran-ggplot2 for Suggests:ggplot2
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-cran-dbi for Imports:DBI
I: Using r-bioc-zlibbioc for Imports:zlibbioc
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.27.12)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.23.9)
I: Using r-bioc-xvector for Imports:XVector (>= 0.29.2)
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.57.2)
I: Using r-bioc-annotationdbi for Imports:AnnotationDbi (>= 1.27.9)
I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.39.7)
I: Using r-bioc-bsgenome for Imports:BSgenome (>= 1.47.3)
I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures (>= 1.31.3)
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: Using r-bioc-xvector for LinkingTo:XVector
I: Using r-bioc-biostrings for LinkingTo:Biostrings
I: Using r-bioc-rhtslib for LinkingTo:Rhtslib (>= 1.99.3)
I: BioConductor API version: r-api-bioc-3.16
I: Use r-bioc-variantannotation as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-variantannotation-dbgsym' in '../r-bioc-variantannotation-dbgsym_1.44.1-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-variantannotation' in '../r-bioc-variantannotation_1.44.1-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-variantannotation_1.44.1-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../r-bioc-variantannotation_1.44.1-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-03-02T05:14:14Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-variantannotation_1.44.1-1_armhf.changes:
------------------------------------------------
Format: 1.8
Date: Mon, 20 Feb 2023 13:32:10 +0100
Source: r-bioc-variantannotation
Binary: r-bioc-variantannotation r-bioc-variantannotation-dbgsym
Architecture: armhf
Version: 1.44.1-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-variantannotation - BioConductor annotation of genetic variants
Changes:
r-bioc-variantannotation (1.44.1-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.6.2 (routine-update)
* Reduce piuparts noise in transitions (routine-update)
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Files:
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4e0a6a77a05e7b60e3e5fd522ea5fc49 12865 gnu-r optional r-bioc-variantannotation_1.44.1-1_armhf.buildinfo
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+------------------------------------------------------------------------------+
| Buildinfo |
+------------------------------------------------------------------------------+
Format: 1.0
Source: r-bioc-variantannotation
Binary: r-bioc-variantannotation r-bioc-variantannotation-dbgsym
Architecture: armhf
Version: 1.44.1-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Thu, 02 Mar 2023 05:14:13 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
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automake (= 1:1.16.5-1.3),
autopoint (= 0.21-11),
autotools-dev (= 20220109.1),
base-files (= 12.3+rpi1),
base-passwd (= 3.6.1),
bash (= 5.2.15-2),
binutils (= 2.40-2+rpi1),
binutils-arm-linux-gnueabihf (= 2.40-2+rpi1),
binutils-common (= 2.40-2+rpi1),
bsdextrautils (= 2.38.1-5),
bsdutils (= 1:2.38.1-5),
build-essential (= 12.9),
bzip2 (= 1.0.8-5+b2),
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coreutils (= 9.1-1),
cpp (= 4:12.2.0-1+rpi1),
cpp-12 (= 12.2.0-14+rpi1),
dash (= 0.5.12-2),
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debhelper (= 13.11.4),
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dh-strip-nondeterminism (= 1.13.1-1),
diffutils (= 1:3.8-4),
dpkg (= 1.21.20+rpi1),
dpkg-dev (= 1.21.20+rpi1),
dwz (= 0.15-1),
file (= 1:5.44-3),
findutils (= 4.9.0-4),
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fontconfig-config (= 2.14.1-4),
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g++ (= 4:12.2.0-1+rpi1),
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libsub-exporter-perl (= 0.989-1),
libsub-exporter-progressive-perl (= 0.001013-3),
libsub-identify-perl (= 0.14-3),
libsub-install-perl (= 0.929-1),
libsub-name-perl (= 0.26-2+b1),
libsub-override-perl (= 0.09-4),
libswitch-perl (= 2.17-3),
libsystemd0 (= 252.5-2+rpi1),
libtasn1-6 (= 4.19.0-2),
libtcl8.6 (= 8.6.13+dfsg-2),
libthai-data (= 0.1.29-1),
libthai0 (= 0.1.29-1),
libtiff6 (= 4.5.0-5),
libtimedate-perl (= 2.3300-2),
libtinfo6 (= 6.4-2),
libtirpc-common (= 1.3.3+ds-1),
libtirpc-dev (= 1.3.3+ds-1),
libtirpc3 (= 1.3.3+ds-1),
libtk8.6 (= 8.6.13-2),
libtool (= 2.4.7-5),
libtry-tiny-perl (= 0.31-2),
libubsan1 (= 12.2.0-14+rpi1),
libuchardet0 (= 0.0.7-1),
libudev1 (= 252.5-2+rpi1),
libunistring2 (= 1.0-2),
liburi-perl (= 5.17-1),
libuuid1 (= 2.38.1-5),
libvariable-magic-perl (= 0.63-1+b1),
libwebp7 (= 1.2.4-0.1),
libwww-curl-perl (= 4.17-10),
libwww-curl-simple-perl (= 0.100191-3),
libx11-6 (= 2:1.8.3-3),
libx11-data (= 2:1.8.3-3),
libxau6 (= 1:1.0.9-1),
libxcb-render0 (= 1.15-1),
libxcb-shm0 (= 1.15-1),
libxcb1 (= 1.15-1),
libxdmcp6 (= 1:1.1.2-3),
libxext6 (= 2:1.3.4-1),
libxft2 (= 2.3.6-1),
libxml2 (= 2.9.14+dfsg-1.1+b1),
libxmuu1 (= 2:1.1.3-3),
libxrender1 (= 1:0.9.10-1.1),
libxss1 (= 1:1.2.3-1),
libxt6 (= 1:1.2.1-1),
libzstd1 (= 1.5.4+dfsg2-3),
linux-libc-dev (= 6.0.12-1+rpi1+b1),
littler (= 0.3.17-1),
login (= 1:4.13+dfsg1-1),
lsb-base (= 11.4+rpi1),
m4 (= 1.4.19-3),
make (= 4.3-4.1),
man-db (= 2.11.2-1),
mawk (= 1.3.4.20200120-3.1),
ncurses-base (= 6.4-2),
ncurses-bin (= 6.4-2),
node-html5shiv (= 3.7.3+dfsg-5),
openssl (= 3.0.8-1),
patch (= 2.7.6-7),
perl (= 5.36.0-7),
perl-base (= 5.36.0-7),
perl-modules-5.36 (= 5.36.0-7),
pkg-config (= 1.8.1-1),
pkgconf (= 1.8.1-1),
pkgconf-bin (= 1.8.1-1),
po-debconf (= 1.0.21+nmu1),
r-base-core (= 4.2.2.20221110-2),
r-base-dev (= 4.2.2.20221110-2),
r-bioc-annotationdbi (= 1.60.0-1),
r-bioc-biobase (= 2.58.0-2),
r-bioc-biocfilecache (= 2.6.0+dfsg-2),
r-bioc-biocgenerics (= 0.44.0-2),
r-bioc-biocio (= 1.8.0+dfsg-1),
r-bioc-biocparallel (= 1.32.5-1),
r-bioc-biomart (= 2.54.0+dfsg-1),
r-bioc-biostrings (= 2.66.0-1),
r-bioc-bsgenome (= 1.66.2-1),
r-bioc-delayedarray (= 0.24.0+dfsg-1),
r-bioc-genomeinfodb (= 1.34.9-1),
r-bioc-genomeinfodbdata (= 1.2.9-1),
r-bioc-genomicalignments (= 1.34.0-1),
r-bioc-genomicfeatures (= 1.50.4+dfsg-1),
r-bioc-genomicranges (= 1.50.2+dfsg-1),
r-bioc-iranges (= 2.32.0-1),
r-bioc-keggrest (= 1.38.0+dfsg-1),
r-bioc-matrixgenerics (= 1.10.0-1),
r-bioc-rhtslib (= 2.0.0+dfsg-1),
r-bioc-rsamtools (= 2.14.0-1),
r-bioc-rtracklayer (= 1.58.0-1),
r-bioc-s4vectors (= 0.36.1-1),
r-bioc-summarizedexperiment (= 1.28.0+dfsg-1),
r-bioc-xvector (= 0.38.0-1),
r-bioc-zlibbioc (= 1.44.0+dfsg-1),
r-cran-askpass (= 1.1-2),
r-cran-assertthat (= 0.2.1-2),
r-cran-bh (= 1.74.0-2),
r-cran-bit (= 4.0.5-1),
r-cran-bit64 (= 4.0.5-1),
r-cran-bitops (= 1.0-7-1),
r-cran-blob (= 1.2.3-1),
r-cran-cachem (= 1.0.6-1),
r-cran-cli (= 3.6.0-1),
r-cran-codetools (= 0.2-19-1),
r-cran-cpp11 (= 0.4.3-1),
r-cran-crayon (= 1.5.2-1),
r-cran-curl (= 5.0.0+dfsg-1),
r-cran-dbi (= 1.1.3-1),
r-cran-dbplyr (= 2.3.0+dfsg-1),
r-cran-digest (= 0.6.31-1),
r-cran-dplyr (= 1.0.10-1),
r-cran-ellipsis (= 0.3.2-2),
r-cran-fansi (= 1.0.4-1),
r-cran-fastmap (= 1.1.0-1),
r-cran-filelock (= 1.0.2-2),
r-cran-formatr (= 1.14-1),
r-cran-futile.logger (= 1.4.3-4),
r-cran-futile.options (= 1.0.1-3),
r-cran-generics (= 0.1.3-1),
r-cran-glue (= 1.6.2-1),
r-cran-hms (= 1.1.2-1),
r-cran-httr (= 1.4.4+dfsg-1),
r-cran-jsonlite (= 1.8.4+dfsg-1),
r-cran-lambda.r (= 1.2.4-2),
r-cran-lattice (= 0.20-45-3),
r-cran-lifecycle (= 1.0.3+dfsg-1),
r-cran-littler (= 0.3.17-1),
r-cran-magrittr (= 2.0.3-1),
r-cran-matrix (= 1.5-3-1),
r-cran-matrixstats (= 0.63.0-1),
r-cran-memoise (= 2.0.1-1),
r-cran-mime (= 0.12-1),
r-cran-openssl (= 2.0.5+dfsg-1),
r-cran-pillar (= 1.8.1+dfsg-1),
r-cran-pkgconfig (= 2.0.3-2),
r-cran-pkgkitten (= 0.2.2-2),
r-cran-plogr (= 0.2.0-3),
r-cran-png (= 0.1-8-1),
r-cran-prettyunits (= 1.1.1-2),
r-cran-progress (= 1.2.2-2),
r-cran-purrr (= 1.0.1-1),
r-cran-r6 (= 2.5.1-1),
r-cran-rappdirs (= 0.3.3-1),
r-cran-rcpp (= 1.0.10-1),
r-cran-rcurl (= 1.98-1.10+dfsg-1),
r-cran-restfulr (= 0.0.15-1),
r-cran-rjson (= 0.2.21-1),
r-cran-rlang (= 1.0.6-1),
r-cran-rsqlite (= 2.2.20-1),
r-cran-snow (= 1:0.4.4-2),
r-cran-stringi (= 1.7.12-1),
r-cran-stringr (= 1.5.0-1),
r-cran-sys (= 3.4.1-1),
r-cran-tibble (= 3.1.8+dfsg-1),
r-cran-tidyselect (= 1.2.0+dfsg-1),
r-cran-utf8 (= 1.2.3-1),
r-cran-vctrs (= 0.5.2-1),
r-cran-withr (= 2.5.0-1),
r-cran-xml (= 3.99-0.13-1),
r-cran-xml2 (= 1.3.3-1),
r-cran-yaml (= 2.3.7-1),
readline-common (= 8.2-1.3),
rpcsvc-proto (= 1.4.3-1),
sed (= 4.9-1),
sensible-utils (= 0.0.17+nmu1),
sgml-base (= 1.31),
sysvinit-utils (= 3.06-2),
tar (= 1.34+dfsg-1),
tzdata (= 2022g-5),
ucf (= 3.0043+nmu1),
unzip (= 6.0-27),
util-linux (= 2.38.1-5),
util-linux-extra (= 2.38.1-5),
x11-common (= 1:7.7+23),
xauth (= 1:1.1.2-1),
xdg-utils (= 1.1.3-4.1),
xz-utils (= 5.4.1-0.2),
zip (= 3.0-12),
zlib1g (= 1:1.2.13.dfsg-1),
zlib1g-dev (= 1:1.2.13.dfsg-1)
Environment:
DEB_BUILD_OPTIONS="parallel=4"
LANG="en_GB.UTF-8"
LC_ALL="C.UTF-8"
SOURCE_DATE_EPOCH="1676896330"
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-variantannotation-dbgsym_1.44.1-1_armhf.deb
--------------------------------------------------
new Debian package, version 2.0.
size 87628 bytes: control archive=544 bytes.
434 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-variantannotation-dbgsym
Source: r-bioc-variantannotation
Version: 1.44.1-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 156
Depends: r-bioc-variantannotation (= 1.44.1-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-variantannotation
Build-Ids: 52deb0bdbbdcd540b1811e3abb2061b06802ab95
drwxr-xr-x root/root 0 2023-02-20 12:32 ./
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/lib/
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/lib/debug/
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/lib/debug/.build-id/52/
-rw-r--r-- root/root 149080 2023-02-20 12:32 ./usr/lib/debug/.build-id/52/deb0bdbbdcd540b1811e3abb2061b06802ab95.debug
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/share/
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/share/doc/
lrwxrwxrwx root/root 0 2023-02-20 12:32 ./usr/share/doc/r-bioc-variantannotation-dbgsym -> r-bioc-variantannotation
r-bioc-variantannotation_1.44.1-1_armhf.deb
-------------------------------------------
new Debian package, version 2.0.
size 3593500 bytes: control archive=2976 bytes.
1186 bytes, 13 lines control
7336 bytes, 73 lines md5sums
Package: r-bioc-variantannotation
Version: 1.44.1-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 5014
Depends: r-base-core (>= 4.2.2.20221110-2), r-api-4.0, r-api-bioc-3.16, r-bioc-biocgenerics (>= 0.37.0), r-bioc-matrixgenerics, r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.41.5), r-bioc-summarizedexperiment (>= 1.19.5), r-bioc-rsamtools (>= 1.99.0), r-cran-dbi, r-bioc-zlibbioc, r-bioc-biobase, r-bioc-s4vectors (>= 0.27.12), r-bioc-iranges (>= 2.23.9), r-bioc-xvector (>= 0.29.2), r-bioc-biostrings (>= 2.57.2), r-bioc-annotationdbi (>= 1.27.9), r-bioc-rtracklayer (>= 1.39.7), r-bioc-bsgenome (>= 1.47.3), r-bioc-genomicfeatures (>= 1.31.3), r-bioc-rhtslib (>= 1.99.3), libc6 (>= 2.34), libcurl4 (>= 7.18.0)
Suggests: r-cran-runit, r-bioc-annotationhub, r-bioc-snpstats, r-cran-ggplot2, r-bioc-biocstyle
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/VariantAnnotation/
Description: BioConductor annotation of genetic variants
This BioConductor package provides R functions to annotate variants,
compute amino acid coding changess and to predict coding outcomes.
drwxr-xr-x root/root 0 2023-02-20 12:32 ./
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/lib/
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/lib/R/
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/lib/R/site-library/
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-rw-r--r-- root/root 1768 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/CITATION
-rw-r--r-- root/root 2130 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/DESCRIPTION
-rw-r--r-- root/root 1669 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/INDEX
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-rw-r--r-- root/root 3474 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/Meta/Rd.rds
-rw-r--r-- root/root 122 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/Meta/features.rds
-rw-r--r-- root/root 3596 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/Meta/hsearch.rds
-rw-r--r-- root/root 3018 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/Meta/links.rds
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-rw-r--r-- root/root 3388 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/NAMESPACE
-rw-r--r-- root/root 18956 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/NEWS
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-rw-r--r-- root/root 1058 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation
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-rw-r--r-- root/root 3032 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.R
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-rw-r--r-- root/root 561408 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz
-rw-r--r-- root/root 637 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz.tbi
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-rw-r--r-- root/root 124778 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz
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-rw-r--r-- root/root 1072 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_vcfFields.R
-rw-r--r-- root/root 4731 2023-02-20 12:32 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_writeVcf-methods.R
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/share/
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/share/doc/
drwxr-xr-x root/root 0 2023-02-20 12:32 ./usr/share/doc/r-bioc-variantannotation/
-rw-r--r-- root/root 1035 2023-02-20 12:32 ./usr/share/doc/r-bioc-variantannotation/changelog.Debian.gz
-rw-r--r-- root/root 5430 2023-02-20 12:32 ./usr/share/doc/r-bioc-variantannotation/copyright
+------------------------------------------------------------------------------+
| Post Build |
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+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
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| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build Type: any
Build-Space: 11508
Build-Time: 259
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 1863
Job: r-bioc-variantannotation_1.44.1-1
Machine Architecture: armhf
Package: r-bioc-variantannotation
Package-Time: 2155
Source-Version: 1.44.1-1
Space: 11508
Status: successful
Version: 1.44.1-1
--------------------------------------------------------------------------------
Finished at 2023-03-02T05:14:14Z
Build needed 00:35:55, 11508k disk space