r-bioc-variantannotation →
1.20.0-1 →
armhf → 2016-11-02 06:20:58
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on testbuildd.raspbian.org
+==============================================================================+
| r-bioc-variantannotation 1.20.0-1 (armhf) Wed, 02 Nov 2016 05:53:52 +0000 |
+==============================================================================+
Package: r-bioc-variantannotation
Version: 1.20.0-1
Source Version: 1.20.0-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-f2a08438-c879-412e-8e11-ca1e2e079baf' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9427 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.4 MB]
Fetched 20.8 MB in 25s (808 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-variantannotation' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-variantannotation/trunk/
Need to get 1643 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main r-bioc-variantannotation 1.20.0-1 (dsc) [2305 B]
Get:2 http://172.17.0.1/private stretch-staging/main r-bioc-variantannotation 1.20.0-1 (tar) [1634 kB]
Get:3 http://172.17.0.1/private stretch-staging/main r-bioc-variantannotation 1.20.0-1 (diff) [7220 B]
Fetched 1643 kB in 0s (2747 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-variantannotation-ub9f2L/r-bioc-variantannotation-1.20.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-variantannotation-ub9f2L' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-JuNu4M/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-JuNu4M/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-JuNu4M/gpg/trustdb.gpg: trustdb created
gpg: key 5FBC947B34E39F26: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 5FBC947B34E39F26: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 5FBC947B34E39F26: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ Release.gpg [342 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ Packages [431 B]
Fetched 2079 B in 0s (3501 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dirmngr fuse2fs gnupg-l10n libffi6 libfuse2 libgnutls30 libhogweed4
libldap-2.4-2 libnettle6 libp11-kit0 libsasl2-2 libsasl2-modules
libsasl2-modules-db libssl1.0.2 libtasn1-6 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 5 not upgraded.
Need to get 768 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [768 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 768 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13152 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), dh-r, r-base-dev, r-bioc-genomicfeatures (>= 1.22.1), r-bioc-bsgenome (>= 1.38.0)
Filtered Build-Depends: debhelper (>= 9), dh-r, r-base-dev, r-bioc-genomicfeatures (>= 1.22.1), r-bioc-bsgenome (>= 1.38.0)
dpkg-deb: building package 'sbuild-build-depends-r-bioc-variantannotation-dummy' in '/<<BUILDDIR>>/resolver-JuNu4M/apt_archive/sbuild-build-depends-r-bioc-variantannotation-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-variantannotation-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ Release.gpg [342 B]
Get:4 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ Sources [545 B]
Get:5 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ Packages [623 B]
Fetched 2473 B in 0s (3850 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-variantannotation build dependencies (apt-based resolver)
------------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dirmngr fuse2fs gnupg-l10n libfuse2 libsasl2-modules manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cdbs
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3
libcurl3 libdatrie1 libexpat1 libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgfortran-6-dev libgfortran3 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu57
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses5-dev libnghttp2-14 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
libpng16-16 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libtcl8.6
libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6
libtool libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl po-debconf r-base-core r-base-dev
r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-genomeinfodb
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-cran-bitops r-cran-dbi
r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-lattice
r-cran-matrix r-cran-rcurl r-cran-rsqlite r-cran-snow r-cran-xml ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation devscripts debtags dh-make gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-6-doc libgfortran3-dbg
libcoarrays-dev groff liblapack-doc-man liblapack-doc krb5-doc krb5-user
icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc
gcj-jdk less www-browser libmail-box-perl ess r-doc-info | r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-bioc-go.db r-cran-runit r-bioc-graph r-cran-knitr r-cran-foreach
r-cran-batchjobs r-cran-bbmisc r-cran-doparallel r-cran-rmpi
r-bioc-shortread r-cran-codetools r-bioc-annotate r-bioc-biocinstaller
r-cran-data.table r-cran-digest r-cran-jsonlite r-cran-rmysql r-cran-rsprng
r-cran-rlecuyer gvfs-bin
Recommended packages:
curl | wget | lynx-cur bzip2-doc libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libpng-tools libltdl-dev xml-core
libmail-sendmail-perl r-recommended r-doc-html r-bioc-shortread
r-cran-digest libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cdbs
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3
libcurl3 libdatrie1 libexpat1 libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgfortran-6-dev libgfortran3 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu57
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses5-dev libnghttp2-14 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
libpng16-16 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libtcl8.6
libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev libtk8.6
libtool libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl po-debconf r-base-core r-base-dev
r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel
r-bioc-biomart r-bioc-biostrings r-bioc-bsgenome r-bioc-genomeinfodb
r-bioc-genomicalignments r-bioc-genomicfeatures r-bioc-genomicranges
r-bioc-iranges r-bioc-rsamtools r-bioc-rtracklayer r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-cran-bitops r-cran-dbi
r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-lattice
r-cran-matrix r-cran-rcurl r-cran-rsqlite r-cran-snow r-cran-xml
sbuild-build-depends-r-bioc-variantannotation-dummy ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
0 upgraded, 144 newly installed, 0 to remove and 5 not upgraded.
Need to get 140 MB of archives.
After this operation, 325 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-JuNu4M/apt_archive ./ sbuild-build-depends-r-bioc-variantannotation-dummy 0.invalid.0 [822 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-1 [975 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libpng16-16 armhf 1.6.25-2 [261 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libfreetype6 armhf 2.6.3-3+b1 [385 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf fontconfig-config all 2.11.0-6.7 [271 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libfontconfig1 armhf 2.11.0-6.7 [313 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf fontconfig armhf 2.11.0-6.7 [402 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libpaper1 armhf 1.1.24+nmu4 [21.4 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libpcrecpp0v5 armhf 2:8.39-2 [149 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libxdmcp6 armhf 1:1.1.2-1.1 [24.9 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libx11-data all 2:1.6.3-1 [128 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:23 http://172.17.0.1/private stretch-staging/main armhf libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:24 http://172.17.0.1/private stretch-staging/main armhf libxrender1 armhf 1:0.9.9-2 [28.9 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf libxft2 armhf 2.3.2-1 [48.3 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf x11-common all 1:7.7+16 [251 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-1 [219 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-1 [104 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-1 [63.3 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
Get:33 http://172.17.0.1/private stretch-staging/main armhf libkrb5support0 armhf 1.14.3+dfsg-2 [57.5 kB]
Get:34 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.14.3+dfsg-2 [110 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.14.3+dfsg-2 [262 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.14.3+dfsg-2 [131 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-4 [7407 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2 [805 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20160430.1 [72.6 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-4 [735 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf openssl armhf 1.0.2j-1 [671 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf ca-certificates all 20160104 [200 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf cdbs all 0.4.148 [82.3 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.0-2+rpi1 [2523 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.2 [826 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf unzip armhf 6.0-20 [142 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf xdg-utils all 1.1.1-1 [71.1 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.2.0-6+rpi1 [165 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.1-2 [13.9 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.1-2 [112 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libpixman-1-0 armhf 0.34.0-1 [451 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libcairo2 armhf 1.14.6-1+b1 [686 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.16.0-1 [72.5 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.7.0-1 [125 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libcurl3 armhf 7.50.1-1 [251 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libice6 armhf 2:1.0.9-1+b1 [51.9 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.5.1-2 [109 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.1-2 [1392 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf libthai-data all 0.1.25-2 [165 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libdatrie1 armhf 0.2.10-4 [32.8 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libthai0 armhf 0.1.25-2 [48.7 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libpango-1.0-0 armhf 1.40.3-2 [300 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libgraphite2-3 armhf 1.3.8-1 [62.5 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libharfbuzz0b armhf 1.2.7-1+b1 [589 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libpangoft2-1.0-0 armhf 1.40.3-2 [196 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libpangocairo-1.0-0 armhf 1.40.3-2 [186 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libtcl8.6 armhf 8.6.6+dfsg-1 [861 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf libtiff5 armhf 4.0.6-2 [203 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libtk8.6 armhf 8.6.6-1 [659 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf r-base-core armhf 3.3.1.20161024-1 [20.8 MB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf libgfortran-6-dev armhf 6.2.0-6+rpi1 [199 kB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf gfortran-6 armhf 6.2.0-6+rpi1 [5405 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:6.1.1-1 [1370 B]
Get:97 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.1-2 [18.9 kB]
Get:98 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.1-2 [1379 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf libtinfo-dev armhf 6.0+20160917-1 [65.4 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libncurses5-dev armhf 6.0+20160917-1 [245 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf libreadline-dev armhf 7.0-1 [109 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.1-2 [181 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf libjpeg-dev all 1:1.5.1-2 [56.1 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf libpcre16-3 armhf 2:8.39-2 [235 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf libpcre32-3 armhf 2:8.39-2 [227 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf libpcre3-dev armhf 2:8.39-2 [568 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf libpng-dev armhf 1.6.25-2 [230 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf libbz2-dev armhf 1.0.6-8 [27.8 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf liblzma-dev armhf 5.2.2-1.2 [284 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf icu-devtools armhf 57.1-4 [156 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf libicu-dev armhf 57.1-4 [15.7 MB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:114 http://172.17.0.1/private stretch-staging/main armhf xauth armhf 1:1.0.9-1 [35.6 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf r-base-dev all 3.3.1.20161024-1 [4298 B]
Get:116 http://172.17.0.1/private stretch-staging/main armhf dh-r all 20160916 [7378 B]
Get:117 http://172.17.0.1/private stretch-staging/main armhf r-bioc-biocgenerics all 0.20.0-1 [483 kB]
Get:118 http://172.17.0.1/private stretch-staging/main armhf r-bioc-biobase armhf 2.34.0-1 [1989 kB]
Get:119 http://172.17.0.1/private stretch-staging/main armhf r-bioc-s4vectors armhf 0.12.0-1 [1104 kB]
Get:120 http://172.17.0.1/private stretch-staging/main armhf r-bioc-iranges armhf 2.8.0-1 [1428 kB]
Get:121 http://172.17.0.1/private stretch-staging/main armhf r-cran-dbi armhf 0.5-1-1 [334 kB]
Get:122 http://172.17.0.1/private stretch-staging/main armhf r-cran-rsqlite armhf 1.0.0-2 [302 kB]
Get:123 http://172.17.0.1/private stretch-staging/main armhf r-bioc-annotationdbi all 1.36.0-1 [4187 kB]
Get:124 http://172.17.0.1/private stretch-staging/main armhf r-cran-lambda.r all 1.1.7-3 [66.4 kB]
Get:125 http://172.17.0.1/private stretch-staging/main armhf r-cran-futile.options all 1.0.0-2 [15.4 kB]
Get:126 http://172.17.0.1/private stretch-staging/main armhf r-cran-futile.logger all 1.4.1-3 [84.3 kB]
Get:127 http://172.17.0.1/private stretch-staging/main armhf r-cran-snow all 1:0.4.2-1 [65.0 kB]
Get:128 http://172.17.0.1/private stretch-staging/main armhf r-bioc-biocparallel all 1.8.0-2 [633 kB]
Get:129 http://172.17.0.1/private stretch-staging/main armhf r-cran-xml armhf 3.98-1.4-2 [1645 kB]
Get:130 http://172.17.0.1/private stretch-staging/main armhf r-cran-bitops armhf 1.0-6-1 [23.6 kB]
Get:131 http://172.17.0.1/private stretch-staging/main armhf r-cran-rcurl armhf 1.95-4.7-1 [621 kB]
Get:132 http://172.17.0.1/private stretch-staging/main armhf r-bioc-biomart all 2.30.0-1 [183 kB]
Get:133 http://172.17.0.1/private stretch-staging/main armhf r-bioc-xvector armhf 0.14.0-1 [327 kB]
Get:134 http://172.17.0.1/private stretch-staging/main armhf r-bioc-biostrings armhf 2.40.2-1 [13.5 MB]
Get:135 http://172.17.0.1/private stretch-staging/main armhf r-bioc-genomeinfodb all 1.10.0-1 [14.7 MB]
Get:136 http://172.17.0.1/private stretch-staging/main armhf r-bioc-genomicranges armhf 1.24.0-1 [1301 kB]
Get:137 http://172.17.0.1/private stretch-staging/main armhf r-bioc-rsamtools armhf 1.26.1-1 [3196 kB]
Get:138 http://172.17.0.1/private stretch-staging/main armhf r-cran-lattice armhf 0.20-34-1 [713 kB]
Get:139 http://172.17.0.1/private stretch-staging/main armhf r-cran-matrix armhf 1.2-7.1-1 [2248 kB]
Get:140 http://172.17.0.1/private stretch-staging/main armhf r-bioc-summarizedexperiment all 1.4.0-1 [1353 kB]
Get:141 http://172.17.0.1/private stretch-staging/main armhf r-bioc-genomicalignments armhf 1.8.0-1 [1444 kB]
Get:142 http://172.17.0.1/private stretch-staging/main armhf r-bioc-rtracklayer armhf 1.32.2-1 [1761 kB]
Get:143 http://172.17.0.1/private stretch-staging/main armhf r-bioc-bsgenome all 1.42.0-2 [6483 kB]
Get:144 http://172.17.0.1/private stretch-staging/main armhf r-bioc-genomicfeatures all 1.26.0-1 [1052 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 140 MB in 1min 43s (1349 kB/s)
Selecting previously unselected package groff-base.
(Reading database ... 13152 files and directories currently installed.)
Preparing to unpack .../000-groff-base_1.22.3-8_armhf.deb ...
Unpacking groff-base (1.22.3-8) ...
Selecting previously unselected package libbsd0:armhf.
Preparing to unpack .../001-libbsd0_0.8.3-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.3-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../002-bsdmainutils_9.0.12_armhf.deb ...
Unpacking bsdmainutils (9.0.12) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../003-libpipeline1_1.4.1-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.4.1-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../004-man-db_2.7.5-1_armhf.deb ...
Unpacking man-db (2.7.5-1) ...
Selecting previously unselected package libexpat1:armhf.
Preparing to unpack .../005-libexpat1_2.2.0-1_armhf.deb ...
Unpacking libexpat1:armhf (2.2.0-1) ...
Selecting previously unselected package libpng16-16:armhf.
Preparing to unpack .../006-libpng16-16_1.6.25-2_armhf.deb ...
Unpacking libpng16-16:armhf (1.6.25-2) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../007-libfreetype6_2.6.3-3+b1_armhf.deb ...
Unpacking libfreetype6:armhf (2.6.3-3+b1) ...
Selecting previously unselected package ucf.
Preparing to unpack .../008-ucf_3.0036_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0036) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../009-fonts-dejavu-core_2.37-1_all.deb ...
Unpacking fonts-dejavu-core (2.37-1) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../010-fontconfig-config_2.11.0-6.7_all.deb ...
Unpacking fontconfig-config (2.11.0-6.7) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../011-libfontconfig1_2.11.0-6.7_armhf.deb ...
Unpacking libfontconfig1:armhf (2.11.0-6.7) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../012-fontconfig_2.11.0-6.7_armhf.deb ...
Unpacking fontconfig (2.11.0-6.7) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../013-libjbig0_2.1-3.1_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../014-libpaper1_1.1.24+nmu4_armhf.deb ...
Unpacking libpaper1:armhf (1.1.24+nmu4) ...
Selecting previously unselected package libpcrecpp0v5:armhf.
Preparing to unpack .../015-libpcrecpp0v5_2%3a8.39-2_armhf.deb ...
Unpacking libpcrecpp0v5:armhf (2:8.39-2) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../016-libxau6_1%3a1.0.8-1_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.8-1) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../017-libxdmcp6_1%3a1.1.2-1.1_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-1.1) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../018-libxcb1_1.12-1_armhf.deb ...
Unpacking libxcb1:armhf (1.12-1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../019-libx11-data_2%3a1.6.3-1_all.deb ...
Unpacking libx11-data (2:1.6.3-1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../020-libx11-6_2%3a1.6.3-1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.6.3-1) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../021-libxext6_2%3a1.3.3-1_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../022-libxrender1_1%3a0.9.9-2_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.9-2) ...
Selecting previously unselected package libxft2:armhf.
Preparing to unpack .../023-libxft2_2.3.2-1_armhf.deb ...
Unpacking libxft2:armhf (2.3.2-1) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../024-x11-common_1%3a7.7+16_all.deb ...
Unpacking x11-common (1:7.7+16) ...
Selecting previously unselected package libxss1:armhf.
Preparing to unpack .../025-libxss1_1%3a1.2.2-1_armhf.deb ...
Unpacking libxss1:armhf (1:1.2.2-1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../026-libmagic-mgc_1%3a5.29-1_armhf.deb ...
Unpacking libmagic-mgc (1:5.29-1) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../027-libmagic1_1%3a5.29-1_armhf.deb ...
Unpacking libmagic1:armhf (1:5.29-1) ...
Selecting previously unselected package file.
Preparing to unpack .../028-file_1%3a5.29-1_armhf.deb ...
Unpacking file (1:5.29-1) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../029-gettext-base_0.19.8.1-1_armhf.deb ...
Unpacking gettext-base (0.19.8.1-1) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../030-libkeyutils1_1.5.9-9_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-9) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../031-libkrb5support0_1.14.3+dfsg-2_armhf.deb ...
Unpacking libkrb5support0:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../032-libk5crypto3_1.14.3+dfsg-2_armhf.deb ...
Unpacking libk5crypto3:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../033-libkrb5-3_1.14.3+dfsg-2_armhf.deb ...
Unpacking libkrb5-3:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../034-libgssapi-krb5-2_1.14.3+dfsg-2_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.14.3+dfsg-2) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../035-libicu57_57.1-4_armhf.deb ...
Unpacking libicu57:armhf (57.1-4) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../036-libxml2_2.9.4+dfsg1-2_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-2) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../037-libsigsegv2_2.10-5_armhf.deb ...
Unpacking libsigsegv2:armhf (2.10-5) ...
Selecting previously unselected package m4.
Preparing to unpack .../038-m4_1.4.17-5_armhf.deb ...
Unpacking m4 (1.4.17-5) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../039-autoconf_2.69-10_all.deb ...
Unpacking autoconf (2.69-10) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../040-autotools-dev_20160430.1_all.deb ...
Unpacking autotools-dev (20160430.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../041-automake_1%3a1.15-4_all.deb ...
Unpacking automake (1:1.15-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../042-autopoint_0.19.8.1-1_all.deb ...
Unpacking autopoint (0.19.8.1-1) ...
Selecting previously unselected package openssl.
Preparing to unpack .../043-openssl_1.0.2j-1_armhf.deb ...
Unpacking openssl (1.0.2j-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../044-ca-certificates_20160104_all.deb ...
Unpacking ca-certificates (20160104) ...
Selecting previously unselected package cdbs.
Preparing to unpack .../045-cdbs_0.4.148_all.deb ...
Unpacking cdbs (0.4.148) ...
Selecting previously unselected package dctrl-tools.
Preparing to unpack .../046-dctrl-tools_2.24-2_armhf.deb ...
Unpacking dctrl-tools (2.24-2) ...
Selecting previously unselected package libtool.
Preparing to unpack .../047-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../048-dh-autoreconf_12_all.deb ...
Unpacking dh-autoreconf (12) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../049-libarchive-zip-perl_1.59-1_all.deb ...
Unpacking libarchive-zip-perl (1.59-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../050-libfile-stripnondeterminism-perl_0.028-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.028-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../051-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../052-dh-strip-nondeterminism_0.028-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.028-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../053-libglib2.0-0_2.50.0-2+rpi1_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.50.0-2+rpi1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../054-libcroco3_0.6.11-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.11-2) ...
Selecting previously unselected package libunistring0:armhf.
Preparing to unpack .../055-libunistring0_0.9.6+really0.9.3-0.1_armhf.deb ...
Unpacking libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../056-gettext_0.19.8.1-1_armhf.deb ...
Unpacking gettext (0.19.8.1-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../057-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../058-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../059-debhelper_10.2.2_all.deb ...
Unpacking debhelper (10.2.2) ...
Selecting previously unselected package zip.
Preparing to unpack .../060-zip_3.0-11_armhf.deb ...
Unpacking zip (3.0-11) ...
Selecting previously unselected package unzip.
Preparing to unpack .../061-unzip_6.0-20_armhf.deb ...
Unpacking unzip (6.0-20) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../062-libpaper-utils_1.1.24+nmu4_armhf.deb ...
Unpacking libpaper-utils (1.1.24+nmu4) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../063-xdg-utils_1.1.1-1_all.deb ...
Unpacking xdg-utils (1.1.1-1) ...
Selecting previously unselected package libgfortran3:armhf.
Preparing to unpack .../064-libgfortran3_6.2.0-6+rpi1_armhf.deb ...
Unpacking libgfortran3:armhf (6.2.0-6+rpi1) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../065-libblas-common_3.6.1-2_armhf.deb ...
Unpacking libblas-common (3.6.1-2) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../066-libblas3_3.6.1-2_armhf.deb ...
Unpacking libblas3 (3.6.1-2) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../067-libpixman-1-0_0.34.0-1_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.34.0-1) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../068-libxcb-render0_1.12-1_armhf.deb ...
Unpacking libxcb-render0:armhf (1.12-1) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../069-libxcb-shm0_1.12-1_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.12-1) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../070-libcairo2_1.14.6-1+b1_armhf.deb ...
Unpacking libcairo2:armhf (1.14.6-1+b1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../071-libnghttp2-14_1.16.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.16.0-1) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../072-librtmp1_2.4+20151223.gitfa8646d.1-1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../073-libssh2-1_1.7.0-1_armhf.deb ...
Unpacking libssh2-1:armhf (1.7.0-1) ...
Selecting previously unselected package libcurl3:armhf.
Preparing to unpack .../074-libcurl3_7.50.1-1_armhf.deb ...
Unpacking libcurl3:armhf (7.50.1-1) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../075-libice6_2%3a1.0.9-1+b1_armhf.deb ...
Unpacking libice6:armhf (2:1.0.9-1+b1) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../076-libjpeg62-turbo_1%3a1.5.1-2_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:1.5.1-2) ...
Selecting previously unselected package liblapack3.
Preparing to unpack .../077-liblapack3_3.6.1-2_armhf.deb ...
Unpacking liblapack3 (3.6.1-2) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../078-libthai-data_0.1.25-2_all.deb ...
Unpacking libthai-data (0.1.25-2) ...
Selecting previously unselected package libdatrie1:armhf.
Preparing to unpack .../079-libdatrie1_0.2.10-4_armhf.deb ...
Unpacking libdatrie1:armhf (0.2.10-4) ...
Selecting previously unselected package libthai0:armhf.
Preparing to unpack .../080-libthai0_0.1.25-2_armhf.deb ...
Unpacking libthai0:armhf (0.1.25-2) ...
Selecting previously unselected package libpango-1.0-0:armhf.
Preparing to unpack .../081-libpango-1.0-0_1.40.3-2_armhf.deb ...
Unpacking libpango-1.0-0:armhf (1.40.3-2) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../082-libgraphite2-3_1.3.8-1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.8-1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../083-libharfbuzz0b_1.2.7-1+b1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (1.2.7-1+b1) ...
Selecting previously unselected package libpangoft2-1.0-0:armhf.
Preparing to unpack .../084-libpangoft2-1.0-0_1.40.3-2_armhf.deb ...
Unpacking libpangoft2-1.0-0:armhf (1.40.3-2) ...
Selecting previously unselected package libpangocairo-1.0-0:armhf.
Preparing to unpack .../085-libpangocairo-1.0-0_1.40.3-2_armhf.deb ...
Unpacking libpangocairo-1.0-0:armhf (1.40.3-2) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../086-libsm6_2%3a1.2.2-1+b1_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.2-1+b1) ...
Selecting previously unselected package libtcl8.6:armhf.
Preparing to unpack .../087-libtcl8.6_8.6.6+dfsg-1_armhf.deb ...
Unpacking libtcl8.6:armhf (8.6.6+dfsg-1) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../088-libtiff5_4.0.6-2_armhf.deb ...
Unpacking libtiff5:armhf (4.0.6-2) ...
Selecting previously unselected package libtk8.6:armhf.
Preparing to unpack .../089-libtk8.6_8.6.6-1_armhf.deb ...
Unpacking libtk8.6:armhf (8.6.6-1) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../090-libxt6_1%3a1.1.5-1_armhf.deb ...
Unpacking libxt6:armhf (1:1.1.5-1) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../091-r-base-core_3.3.1.20161024-1_armhf.deb ...
Unpacking r-base-core (3.3.1.20161024-1) ...
Selecting previously unselected package libgfortran-6-dev:armhf.
Preparing to unpack .../092-libgfortran-6-dev_6.2.0-6+rpi1_armhf.deb ...
Unpacking libgfortran-6-dev:armhf (6.2.0-6+rpi1) ...
Selecting previously unselected package gfortran-6.
Preparing to unpack .../093-gfortran-6_6.2.0-6+rpi1_armhf.deb ...
Unpacking gfortran-6 (6.2.0-6+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../094-gfortran_4%3a6.1.1-1_armhf.deb ...
Unpacking gfortran (4:6.1.1-1) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../095-libblas-dev_3.6.1-2_armhf.deb ...
Unpacking libblas-dev (3.6.1-2) ...
Selecting previously unselected package liblapack-dev.
Preparing to unpack .../096-liblapack-dev_3.6.1-2_armhf.deb ...
Unpacking liblapack-dev (3.6.1-2) ...
Selecting previously unselected package libtinfo-dev:armhf.
Preparing to unpack .../097-libtinfo-dev_6.0+20160917-1_armhf.deb ...
Unpacking libtinfo-dev:armhf (6.0+20160917-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
Preparing to unpack .../098-libncurses5-dev_6.0+20160917-1_armhf.deb ...
Unpacking libncurses5-dev:armhf (6.0+20160917-1) ...
Selecting previously unselected package libreadline-dev:armhf.
Preparing to unpack .../099-libreadline-dev_7.0-1_armhf.deb ...
Unpacking libreadline-dev:armhf (7.0-1) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
Preparing to unpack .../100-libjpeg62-turbo-dev_1%3a1.5.1-2_armhf.deb ...
Unpacking libjpeg62-turbo-dev:armhf (1:1.5.1-2) ...
Selecting previously unselected package libjpeg-dev.
Preparing to unpack .../101-libjpeg-dev_1%3a1.5.1-2_all.deb ...
Unpacking libjpeg-dev (1:1.5.1-2) ...
Selecting previously unselected package libpcre16-3:armhf.
Preparing to unpack .../102-libpcre16-3_2%3a8.39-2_armhf.deb ...
Unpacking libpcre16-3:armhf (2:8.39-2) ...
Selecting previously unselected package libpcre32-3:armhf.
Preparing to unpack .../103-libpcre32-3_2%3a8.39-2_armhf.deb ...
Unpacking libpcre32-3:armhf (2:8.39-2) ...
Selecting previously unselected package libpcre3-dev:armhf.
Preparing to unpack .../104-libpcre3-dev_2%3a8.39-2_armhf.deb ...
Unpacking libpcre3-dev:armhf (2:8.39-2) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../105-zlib1g-dev_1%3a1.2.8.dfsg-2+b1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Selecting previously unselected package libpng-dev:armhf.
Preparing to unpack .../106-libpng-dev_1.6.25-2_armhf.deb ...
Unpacking libpng-dev:armhf (1.6.25-2) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../107-libbz2-dev_1.0.6-8_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.6-8) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../108-liblzma-dev_5.2.2-1.2_armhf.deb ...
Unpacking liblzma-dev:armhf (5.2.2-1.2) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../109-icu-devtools_57.1-4_armhf.deb ...
Unpacking icu-devtools (57.1-4) ...
Selecting previously unselected package libicu-dev.
Preparing to unpack .../110-libicu-dev_57.1-4_armhf.deb ...
Unpacking libicu-dev (57.1-4) ...
Selecting previously unselected package libxmuu1:armhf.
Preparing to unpack .../111-libxmuu1_2%3a1.1.2-2_armhf.deb ...
Unpacking libxmuu1:armhf (2:1.1.2-2) ...
Selecting previously unselected package xauth.
Preparing to unpack .../112-xauth_1%3a1.0.9-1_armhf.deb ...
Unpacking xauth (1:1.0.9-1) ...
Selecting previously unselected package r-base-dev.
Preparing to unpack .../113-r-base-dev_3.3.1.20161024-1_all.deb ...
Unpacking r-base-dev (3.3.1.20161024-1) ...
Selecting previously unselected package dh-r.
Preparing to unpack .../114-dh-r_20160916_all.deb ...
Unpacking dh-r (20160916) ...
Selecting previously unselected package r-bioc-biocgenerics.
Preparing to unpack .../115-r-bioc-biocgenerics_0.20.0-1_all.deb ...
Unpacking r-bioc-biocgenerics (0.20.0-1) ...
Selecting previously unselected package r-bioc-biobase.
Preparing to unpack .../116-r-bioc-biobase_2.34.0-1_armhf.deb ...
Unpacking r-bioc-biobase (2.34.0-1) ...
Selecting previously unselected package r-bioc-s4vectors.
Preparing to unpack .../117-r-bioc-s4vectors_0.12.0-1_armhf.deb ...
Unpacking r-bioc-s4vectors (0.12.0-1) ...
Selecting previously unselected package r-bioc-iranges.
Preparing to unpack .../118-r-bioc-iranges_2.8.0-1_armhf.deb ...
Unpacking r-bioc-iranges (2.8.0-1) ...
Selecting previously unselected package r-cran-dbi.
Preparing to unpack .../119-r-cran-dbi_0.5-1-1_armhf.deb ...
Unpacking r-cran-dbi (0.5-1-1) ...
Selecting previously unselected package r-cran-rsqlite.
Preparing to unpack .../120-r-cran-rsqlite_1.0.0-2_armhf.deb ...
Unpacking r-cran-rsqlite (1.0.0-2) ...
Selecting previously unselected package r-bioc-annotationdbi.
Preparing to unpack .../121-r-bioc-annotationdbi_1.36.0-1_all.deb ...
Unpacking r-bioc-annotationdbi (1.36.0-1) ...
Selecting previously unselected package r-cran-lambda.r.
Preparing to unpack .../122-r-cran-lambda.r_1.1.7-3_all.deb ...
Unpacking r-cran-lambda.r (1.1.7-3) ...
Selecting previously unselected package r-cran-futile.options.
Preparing to unpack .../123-r-cran-futile.options_1.0.0-2_all.deb ...
Unpacking r-cran-futile.options (1.0.0-2) ...
Selecting previously unselected package r-cran-futile.logger.
Preparing to unpack .../124-r-cran-futile.logger_1.4.1-3_all.deb ...
Unpacking r-cran-futile.logger (1.4.1-3) ...
Selecting previously unselected package r-cran-snow.
Preparing to unpack .../125-r-cran-snow_1%3a0.4.2-1_all.deb ...
Unpacking r-cran-snow (1:0.4.2-1) ...
Selecting previously unselected package r-bioc-biocparallel.
Preparing to unpack .../126-r-bioc-biocparallel_1.8.0-2_all.deb ...
Unpacking r-bioc-biocparallel (1.8.0-2) ...
Selecting previously unselected package r-cran-xml.
Preparing to unpack .../127-r-cran-xml_3.98-1.4-2_armhf.deb ...
Unpacking r-cran-xml (3.98-1.4-2) ...
Selecting previously unselected package r-cran-bitops.
Preparing to unpack .../128-r-cran-bitops_1.0-6-1_armhf.deb ...
Unpacking r-cran-bitops (1.0-6-1) ...
Selecting previously unselected package r-cran-rcurl.
Preparing to unpack .../129-r-cran-rcurl_1.95-4.7-1_armhf.deb ...
Unpacking r-cran-rcurl (1.95-4.7-1) ...
Selecting previously unselected package r-bioc-biomart.
Preparing to unpack .../130-r-bioc-biomart_2.30.0-1_all.deb ...
Unpacking r-bioc-biomart (2.30.0-1) ...
Selecting previously unselected package r-bioc-xvector.
Preparing to unpack .../131-r-bioc-xvector_0.14.0-1_armhf.deb ...
Unpacking r-bioc-xvector (0.14.0-1) ...
Selecting previously unselected package r-bioc-biostrings.
Preparing to unpack .../132-r-bioc-biostrings_2.40.2-1_armhf.deb ...
Unpacking r-bioc-biostrings (2.40.2-1) ...
Selecting previously unselected package r-bioc-genomeinfodb.
Preparing to unpack .../133-r-bioc-genomeinfodb_1.10.0-1_all.deb ...
Unpacking r-bioc-genomeinfodb (1.10.0-1) ...
Selecting previously unselected package r-bioc-genomicranges.
Preparing to unpack .../134-r-bioc-genomicranges_1.24.0-1_armhf.deb ...
Unpacking r-bioc-genomicranges (1.24.0-1) ...
Selecting previously unselected package r-bioc-rsamtools.
Preparing to unpack .../135-r-bioc-rsamtools_1.26.1-1_armhf.deb ...
Unpacking r-bioc-rsamtools (1.26.1-1) ...
Selecting previously unselected package r-cran-lattice.
Preparing to unpack .../136-r-cran-lattice_0.20-34-1_armhf.deb ...
Unpacking r-cran-lattice (0.20-34-1) ...
Selecting previously unselected package r-cran-matrix.
Preparing to unpack .../137-r-cran-matrix_1.2-7.1-1_armhf.deb ...
Unpacking r-cran-matrix (1.2-7.1-1) ...
Selecting previously unselected package r-bioc-summarizedexperiment.
Preparing to unpack .../138-r-bioc-summarizedexperiment_1.4.0-1_all.deb ...
Unpacking r-bioc-summarizedexperiment (1.4.0-1) ...
Selecting previously unselected package r-bioc-genomicalignments.
Preparing to unpack .../139-r-bioc-genomicalignments_1.8.0-1_armhf.deb ...
Unpacking r-bioc-genomicalignments (1.8.0-1) ...
Selecting previously unselected package r-bioc-rtracklayer.
Preparing to unpack .../140-r-bioc-rtracklayer_1.32.2-1_armhf.deb ...
Unpacking r-bioc-rtracklayer (1.32.2-1) ...
Selecting previously unselected package r-bioc-bsgenome.
Preparing to unpack .../141-r-bioc-bsgenome_1.42.0-2_all.deb ...
Unpacking r-bioc-bsgenome (1.42.0-2) ...
Selecting previously unselected package r-bioc-genomicfeatures.
Preparing to unpack .../142-r-bioc-genomicfeatures_1.26.0-1_all.deb ...
Unpacking r-bioc-genomicfeatures (1.26.0-1) ...
Selecting previously unselected package sbuild-build-depends-r-bioc-variantannotation-dummy.
Preparing to unpack .../143-sbuild-build-depends-r-bioc-variantannotation-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-r-bioc-variantannotation-dummy (0.invalid.0) ...
Setting up cdbs (0.4.148) ...
Setting up libexpat1:armhf (2.2.0-1) ...
Setting up libbz2-dev:armhf (1.0.6-8) ...
Setting up libjpeg62-turbo:armhf (1:1.5.1-2) ...
Setting up libarchive-zip-perl (1.59-1) ...
Setting up libnghttp2-14:armhf (1.16.0-1) ...
Setting up libpng16-16:armhf (1.6.25-2) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up libsigsegv2:armhf (2.10-5) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libblas-common (3.6.1-2) ...
Setting up libgfortran3:armhf (6.2.0-6+rpi1) ...
Setting up groff-base (1.22.3-8) ...
Setting up libglib2.0-0:armhf (2.50.0-2+rpi1) ...
No schema files found: doing nothing.
Setting up libgfortran-6-dev:armhf (6.2.0-6+rpi1) ...
Setting up unzip (6.0-20) ...
Setting up libtinfo-dev:armhf (6.0+20160917-1) ...
Setting up dctrl-tools (2.24-2) ...
Setting up libdatrie1:armhf (0.2.10-4) ...
Setting up libtiff5:armhf (4.0.6-2) ...
Setting up gettext-base (0.19.8.1-1) ...
Setting up libpipeline1:armhf (1.4.1-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up m4 (1.4.17-5) ...
Setting up libicu57:armhf (57.1-4) ...
Setting up libbsd0:armhf (0.8.3-1) ...
Setting up ucf (3.0036) ...
Setting up libxml2:armhf (2.9.4+dfsg1-2) ...
Setting up zip (3.0-11) ...
Setting up libfreetype6:armhf (2.6.3-3+b1) ...
Setting up libmagic-mgc (1:5.29-1) ...
Setting up libmagic1:armhf (1:5.29-1) ...
Setting up libgraphite2-3:armhf (1.3.8-1) ...
Setting up libcroco3:armhf (0.6.11-2) ...
Setting up libncurses5-dev:armhf (6.0+20160917-1) ...
Setting up libpixman-1-0:armhf (0.34.0-1) ...
Setting up libblas3 (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libssh2-1:armhf (1.7.0-1) ...
Processing triggers for libc-bin (2.24-5+rpi1) ...
Setting up autotools-dev (20160430.1) ...
Setting up libunistring0:armhf (0.9.6+really0.9.3-0.1) ...
Processing triggers for systemd (231-9) ...
Setting up openssl (1.0.2j-1) ...
Setting up libreadline-dev:armhf (7.0-1) ...
Setting up libpcrecpp0v5:armhf (2:8.39-2) ...
Setting up libpcre32-3:armhf (2:8.39-2) ...
Setting up icu-devtools (57.1-4) ...
Setting up libpcre16-3:armhf (2:8.39-2) ...
Setting up libtcl8.6:armhf (8.6.6+dfsg-1) ...
Setting up libthai-data (0.1.25-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.1-2) ...
Setting up liblzma-dev:armhf (5.2.2-1.2) ...
Setting up libxdmcp6:armhf (1:1.1.2-1.1) ...
Setting up libkeyutils1:armhf (1.5.9-9) ...
Setting up bsdmainutils (9.0.12) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+16) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up xdg-utils (1.1.1-1) ...
Setting up ca-certificates (20160104) ...
Setting up libx11-data (2:1.6.3-1) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
Setting up autopoint (0.19.8.1-1) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2+b1) ...
Setting up libfile-stripnondeterminism-perl (0.028-1) ...
Setting up libpaper1:armhf (1.1.24+nmu4) ...
Creating config file /etc/papersize with new version
Setting up gfortran-6 (6.2.0-6+rpi1) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up libpcre3-dev:armhf (2:8.39-2) ...
Setting up fontconfig-config (2.11.0-6.7) ...
Setting up gettext (0.19.8.1-1) ...
Setting up liblapack3 (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libharfbuzz0b:armhf (1.2.7-1+b1) ...
Setting up autoconf (2.69-10) ...
Setting up libthai0:armhf (0.1.25-2) ...
Setting up libicu-dev (57.1-4) ...
Setting up file (1:5.29-1) ...
Setting up libkrb5support0:armhf (1.14.3+dfsg-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libjpeg-dev (1:1.5.1-2) ...
Setting up automake (1:1.15-4) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libice6:armhf (2:1.0.9-1+b1) ...
Setting up man-db (2.7.5-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpng-dev:armhf (1.6.25-2) ...
Setting up libxcb1:armhf (1.12-1) ...
Setting up libtool (2.4.6-2) ...
Setting up gfortran (4:6.1.1-1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libfontconfig1:armhf (2.11.0-6.7) ...
Setting up libsm6:armhf (2:1.2.2-1+b1) ...
Setting up libk5crypto3:armhf (1.14.3+dfsg-2) ...
Setting up libxcb-render0:armhf (1.12-1) ...
Setting up po-debconf (1.0.20) ...
Setting up libblas-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libx11-6:armhf (2:1.6.3-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up libxcb-shm0:armhf (1.12-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.9-2) ...
Setting up libkrb5-3:armhf (1.14.3+dfsg-2) ...
Setting up libxft2:armhf (2.3.2-1) ...
Setting up fontconfig (2.11.0-6.7) ...
Regenerating fonts cache... done.
Setting up liblapack-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libgssapi-krb5-2:armhf (1.14.3+dfsg-2) ...
Setting up xauth (1:1.0.9-1) ...
Setting up libpango-1.0-0:armhf (1.40.3-2) ...
Setting up libcairo2:armhf (1.14.6-1+b1) ...
Setting up libcurl3:armhf (7.50.1-1) ...
Setting up libtk8.6:armhf (8.6.6-1) ...
Setting up libpangoft2-1.0-0:armhf (1.40.3-2) ...
Setting up libpangocairo-1.0-0:armhf (1.40.3-2) ...
Setting up r-base-core (3.3.1.20161024-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.3.1.20161024-1) ...
Setting up r-bioc-biocgenerics (0.20.0-1) ...
Setting up r-bioc-biobase (2.34.0-1) ...
Setting up r-cran-bitops (1.0-6-1) ...
Setting up r-cran-dbi (0.5-1-1) ...
Setting up r-cran-futile.options (1.0.0-2) ...
Setting up r-cran-rcurl (1.95-4.7-1) ...
Setting up r-cran-rsqlite (1.0.0-2) ...
Setting up r-cran-lambda.r (1.1.7-3) ...
Setting up r-cran-snow (1:0.4.2-1) ...
Setting up r-bioc-s4vectors (0.12.0-1) ...
Setting up r-cran-xml (3.98-1.4-2) ...
Setting up r-cran-lattice (0.20-34-1) ...
Setting up r-cran-futile.logger (1.4.1-3) ...
Setting up r-bioc-iranges (2.8.0-1) ...
Setting up r-bioc-biocparallel (1.8.0-2) ...
Setting up r-cran-matrix (1.2-7.1-1) ...
Setting up r-bioc-genomeinfodb (1.10.0-1) ...
Setting up r-bioc-xvector (0.14.0-1) ...
Setting up r-bioc-biostrings (2.40.2-1) ...
Setting up r-bioc-annotationdbi (1.36.0-1) ...
Setting up r-bioc-genomicranges (1.24.0-1) ...
Setting up r-bioc-summarizedexperiment (1.4.0-1) ...
Setting up r-bioc-biomart (2.30.0-1) ...
Setting up r-bioc-rsamtools (1.26.1-1) ...
Setting up r-bioc-genomicalignments (1.8.0-1) ...
Setting up r-bioc-rtracklayer (1.32.2-1) ...
Setting up r-bioc-genomicfeatures (1.26.0-1) ...
Setting up r-bioc-bsgenome (1.42.0-2) ...
Setting up dh-autoreconf (12) ...
Setting up dh-strip-nondeterminism (0.028-1) ...
Setting up debhelper (10.2.2) ...
Setting up dh-r (20160916) ...
Setting up sbuild-build-depends-r-bioc-variantannotation-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-5+rpi1) ...
Processing triggers for systemd (231-9) ...
Processing triggers for ca-certificates (20160104) ...
Updating certificates in /etc/ssl/certs...
173 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27-9 dpkg-dev_1.18.10 g++-6_6.2.0-6+rpi1 gcc-6_6.2.0-6+rpi1 libc6-dev_2.24-5+rpi1 libstdc++-6-dev_6.2.0-6+rpi1 libstdc++6_6.2.0-6+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.3.1 autoconf_2.69-10 automake_1:1.15-4 autopoint_0.19.8.1-1 autotools-dev_20160430.1 base-files_9.6+rpi1 base-passwd_3.5.40 bash_4.4-1 binutils_2.27-9 bsdmainutils_9.0.12 bsdutils_1:2.28.2-1 build-essential_12.2 bzip2_1.0.6-8 ca-certificates_20160104 cdbs_0.4.148 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:6.1.1-1 cpp-6_6.2.0-6+rpi1 dash_0.5.8-2.3 dctrl-tools_2.24-2 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.2 debianutils_4.8 dh-autoreconf_12 dh-r_20160916 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dirmngr_2.1.15-4 dmsetup_2:1.02.133-1 dpkg_1.18.10 dpkg-dev_1.18.10 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-1 findutils_4.6.0+git+20160703-2 fontconfig_2.11.0-6.7 fontconfig-config_2.11.0-6.7 fonts-dejavu-core_2.37-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.0-6+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.0-6+rpi1 gcc-6-base_6.2.0-6+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:6.1.1-1 gfortran-6_6.2.0-6+rpi1 gnupg_2.1.15-4 gnupg-agent_2.1.15-4 gnupg-l10n_2.1.15-4 gpgv_2.1.15-4 grep_2.26-1 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 icu-devtools_57.1-4 init_1.45 init-system-helpers_1.45 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_22-1.1 libacl1_2.2.52-3 libapparmor1_2.10.95-5 libapt-pkg5.0_1.3.1 libarchive-zip-perl_1.59-1 libasan3_6.2.0-6+rpi1 libassuan0_2.4.3-1 libatomic1_6.2.0-6+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.28.2-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.24-5+rpi1 libc-dev-bin_2.24-5+rpi1 libc6_2.24-5+rpi1 libc6-dev_2.24-5+rpi1 libcairo2_1.14.6-1+b1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.0-6+rpi1 libcomerr2_1.43.3-1 libcroco3_0.6.11-2 libcryptsetup4_2:1.7.2-5 libcurl3_7.50.1-1 libdatrie1_0.2.10-4 libdb5.3_5.3.28-12 libdbus-1-3_1.10.12-1 libdebconfclient0_0.218 libdevmapper1.02.1_2:1.02.133-1 libdpkg-perl_1.18.10 libdrm2_2.4.71-1 libexpat1_2.2.0-1 libfakeroot_1.21-2 libfdisk1_2.28.2-1 libffi6_3.2.1-6 libfile-stripnondeterminism-perl_0.028-1 libfontconfig1_2.11.0-6.7 libfreetype6_2.6.3-3+b1 libfuse2_2.9.7-1 libgc1c2_1:7.4.2-8 libgcc-6-dev_6.2.0-6+rpi1 libgcc1_1:6.2.0-6+rpi1 libgcrypt20_1.7.3-2 libgdbm3_1.8.3-14 libgfortran-6-dev_6.2.0-6+rpi1 libgfortran3_6.2.0-6+rpi1 libglib2.0-0_2.50.0-2+rpi1 libgmp10_2:6.1.1+dfsg-1 libgnutls30_3.5.5-2 libgomp1_6.2.0-6+rpi1 libgpg-error0_1.24-1 libgraphite2-3_1.3.8-1 libgssapi-krb5-2_1.14.3+dfsg-2 libharfbuzz0b_1.2.7-1+b1 libhogweed4_3.3-1 libice6_2:1.0.9-1+b1 libicu-dev_57.1-4 libicu57_57.1-4 libidn11_1.33-1 libip4tc0_1.6.0-4 libisl15_0.17.1-1 libjbig0_2.1-3.1 libjpeg-dev_1:1.5.1-2 libjpeg62-turbo_1:1.5.1-2 libjpeg62-turbo-dev_1:1.5.1-2 libk5crypto3_1.14.3+dfsg-2 libkeyutils1_1.5.9-9 libklibc_2.0.4-9+rpi1 libkmod2_22-1.1 libkrb5-3_1.14.3+dfsg-2 libkrb5support0_1.14.3+dfsg-2 libksba8_1.3.5-2 liblapack-dev_3.6.1-2 liblapack3_3.6.1-2 libldap-2.4-2_2.4.42+dfsg-2+rpi1+b3 liblz4-1_0.0~r131-2 liblzma-dev_5.2.2-1.2 liblzma5_5.2.2-1.2 libmagic-mgc_1:5.29-1 libmagic1_1:5.29-1 libmount1_2.28.2-1 libmpc3_1.0.3-1 libmpfr4_3.1.5-1 libncurses5_6.0+20160917-1 libncurses5-dev_6.0+20160917-1 libncursesw5_6.0+20160917-1 libnettle6_3.3-1 libnghttp2-14_1.16.0-1 libnpth0_1.2-3 libp11-kit0_0.23.2-5 libpam-modules_1.1.8-3.3 libpam-modules-bin_1.1.8-3.3 libpam-runtime_1.1.8-3.3 libpam0g_1.1.8-3.3 libpango-1.0-0_1.40.3-2 libpangocairo-1.0-0_1.40.3-2 libpangoft2-1.0-0_1.40.3-2 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre16-3_2:8.39-2 libpcre3_2:8.39-2 libpcre3-dev_2:8.39-2 libpcre32-3_2:8.39-2 libpcrecpp0v5_2:8.39-2 libperl5.24_5.24.1~rc3-3 libpipeline1_1.4.1-2 libpixman-1-0_0.34.0-1 libpng-dev_1.6.25-2 libpng12-0_1.2.54-6 libpng16-16_1.6.25-2 libprocps6_2:3.3.12-2 libreadline-dev_7.0-1 libreadline7_7.0-1 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.26.dfsg1-15 libsasl2-modules_2.1.26.dfsg1-15 libsasl2-modules-db_2.1.26.dfsg1-15 libseccomp2_2.3.1-2 libselinux1_2.5-3 libsemanage-common_2.5-1 libsemanage1_2.5-1 libsepol1_2.5-1 libsigsegv2_2.10-5 libsm6_2:1.2.2-1+b1 libsmartcols1_2.28.2-1 libsqlite3-0_3.14.2-1 libss2_1.43.3-1 libssh2-1_1.7.0-1 libssl1.0.2_1.0.2j-1 libstdc++-6-dev_6.2.0-6+rpi1 libstdc++6_6.2.0-6+rpi1 libsystemd0_231-9 libtasn1-6_4.9-4 libtcl8.6_8.6.6+dfsg-1 libthai-data_0.1.25-2 libthai0_0.1.25-2 libtiff5_4.0.6-2 libtimedate-perl_2.3000-2 libtinfo-dev_6.0+20160917-1 libtinfo5_6.0+20160917-1 libtk8.6_8.6.6-1 libtool_2.4.6-2 libubsan0_6.2.0-6+rpi1 libudev1_231-9 libunistring0_0.9.6+really0.9.3-0.1 libusb-0.1-4_2:0.1.12-30 libustr-1.0-1_1.0.4-5 libuuid1_2.28.2-1 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb-render0_1.12-1 libxcb-shm0_1.12-1 libxcb1_1.12-1 libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml2_2.9.4+dfsg1-2 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.9-2 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.2 lsb-base_9.20160629+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-1 manpages_4.08-1 mawk_1.3.3-17 mount_2.28.2-1 multiarch-support_2.24-5+rpi1 nano_2.7.0-1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 openssl_1.0.2j-1 passwd_1:4.2-3.2 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.24_5.24.1~rc3-3 pinentry-curses_0.9.7-6 po-debconf_1.0.20 procps_2:3.3.12-2 r-base-core_3.3.1.20161024-1 r-base-dev_3.3.1.20161024-1 r-bioc-annotationdbi_1.36.0-1 r-bioc-biobase_2.34.0-1 r-bioc-biocgenerics_0.20.0-1 r-bioc-biocparallel_1.8.0-2 r-bioc-biomart_2.30.0-1 r-bioc-biostrings_2.40.2-1 r-bioc-bsgenome_1.42.0-2 r-bioc-genomeinfodb_1.10.0-1 r-bioc-genomicalignments_1.8.0-1 r-bioc-genomicfeatures_1.26.0-1 r-bioc-genomicranges_1.24.0-1 r-bioc-iranges_2.8.0-1 r-bioc-rsamtools_1.26.1-1 r-bioc-rtracklayer_1.32.2-1 r-bioc-s4vectors_0.12.0-1 r-bioc-summarizedexperiment_1.4.0-1 r-bioc-xvector_0.14.0-1 r-cran-bitops_1.0-6-1 r-cran-dbi_0.5-1-1 r-cran-futile.logger_1.4.1-3 r-cran-futile.options_1.0.0-2 r-cran-lambda.r_1.1.7-3 r-cran-lattice_0.20-34-1 r-cran-matrix_1.2-7.1-1 r-cran-rcurl_1.95-4.7-1 r-cran-rsqlite_1.0.0-2 r-cran-snow_1:0.4.2-1 r-cran-xml_3.98-1.4-2 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-variantannotation-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_231-9 systemd-sysv_231-9 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1 tzdata_2016h-1 ucf_3.0036 udev_231-9 unzip_6.0-20 util-linux_2.28.2-1 x11-common_1:7.7+16 xauth_1:1.0.9-1 xdg-utils_1.1.1-1 xz-utils_5.2.2-1.2 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Thu Oct 27 12:24:45 2016 UTC
gpgv: using RSA key 578A0494D1C646D1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-variantannotation_1.20.0-1.dsc
dpkg-source: info: extracting r-bioc-variantannotation in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-variantannotation_1.20.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-variantannotation_1.20.0-1.debian.tar.xz
dpkg-source: info: applying use_debian_packaged_zlib.patch
dpkg-source: info: applying drop_tests_requiring_large_data_sets.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=root
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=111
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-f2a08438-c879-412e-8e11-ca1e2e079baf
SCHROOT_UID=106
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-variantannotation
dpkg-buildpackage: info: source version 1.20.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build r-bioc-variantannotation-1.20.0
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_testdir -a -O--buildsystem=R
dh_update_autotools_config -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: VariantAnnotation Version: 1.20.0
I: Building using R version 3.3.1.20161024-1
I: R API version: r-api-3
I: Using built-time from d/changelog: Thu, 27 Oct 2016 14:21:13 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-variantannotation/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-variantannotation/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 27 Oct 2016 14:21:13 +0200'"
* installing *source* package 'VariantAnnotation' ...
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -I"/usr/lib/R/site-library/Rsamtools/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-KhISWV/r-base-3.3.1.20161024=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -I"/usr/lib/R/site-library/Rsamtools/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-KhISWV/r-base-3.3.1.20161024=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -I"/usr/lib/R/site-library/Rsamtools/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-KhISWV/r-base-3.3.1.20161024=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_VariantAnnotation.c -o R_init_VariantAnnotation.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -I"/usr/lib/R/site-library/Rsamtools/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-KhISWV/r-base-3.3.1.20161024=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -I"/usr/lib/R/site-library/Rsamtools/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-KhISWV/r-base-3.3.1.20161024=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dna_hash.c -o dna_hash.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -I"/usr/lib/R/site-library/Rsamtools/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-KhISWV/r-base-3.3.1.20161024=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c rle.c -o rle.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -I"/usr/lib/R/site-library/Rsamtools/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-KhISWV/r-base-3.3.1.20161024=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c strhash.c -o strhash.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -I"/usr/lib/R/site-library/Rsamtools/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-KhISWV/r-base-3.3.1.20161024=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utilities.c -o utilities.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -I"/usr/lib/R/site-library/Rsamtools/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-KhISWV/r-base-3.3.1.20161024=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vcffile.c -o vcffile.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -I"/usr/lib/R/site-library/Rsamtools/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-KhISWV/r-base-3.3.1.20161024=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c vcftype.c -o vcftype.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -D_USE_KNETFILE -DBGZF_CACHE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -I"/usr/lib/R/site-library/Rsamtools/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-KhISWV/r-base-3.3.1.20161024=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c writevcf.c -o writevcf.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-z,relro -o VariantAnnotation.so Biostrings_stubs.o IRanges_stubs.o R_init_VariantAnnotation.o XVector_stubs.o dna_hash.o rle.o strhash.o utilities.o vcffile.o vcftype.o writevcf.o /usr/lib/R/site-library/Rsamtools/usrlib//libbam.a /usr/lib/R/site-library/Rsamtools/usrlib//libbcf.a /usr/lib/R/site-library/Rsamtools/usrlib//libtabix.a -lz -pthread -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-variantannotation/usr/lib/R/site-library/VariantAnnotation/libs
** R
** inst
** preparing package for lazy loading
Creating a new generic function for 'tabulate' in package 'VariantAnnotation'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (VariantAnnotation)
W: Ignoring specified R dependency: R (>= 2.8.0)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.15.3)
I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.7.1)
I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.19.47)
I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment (>= 0.3.1)
I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.23.10)
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-annotationhub for Suggests:AnnotationHub
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene
W: Cannot find a debian package for Suggests:SNPlocs.Hsapiens.dbSNP.20110815
W: Cannot find a debian package for Suggests:SNPlocs.Hsapiens.dbSNP.20101109
W: Cannot find a debian package for Suggests:SIFT.Hsapiens.dbSNP132
W: Cannot find a debian package for Suggests:SIFT.Hsapiens.dbSNP137
W: Cannot find a debian package for Suggests:PolyPhen.Hsapiens.dbSNP131
I: Using r-bioc-snpstats for Suggests:snpStats
I: Using r-cran-ggplot2 for Suggests:ggplot2
W: Cannot find a debian package for Suggests:BiocStyle
I: Using r-cran-dbi for Imports:DBI
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.47)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.3.25)
I: Using r-bioc-xvector for Imports:XVector (>= 0.5.6)
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.33.5)
I: Using r-bioc-annotationdbi for Imports:AnnotationDbi (>= 1.27.9)
I: Using r-bioc-bsgenome for Imports:BSgenome (>= 1.37.6)
I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.25.16)
I: Using r-bioc-genomicfeatures for Imports:GenomicFeatures (>= 1.19.17)
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-variantannotation-dbgsym' in '../r-bioc-variantannotation-dbgsym_1.20.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-variantannotation' in '../r-bioc-variantannotation_1.20.0-1_armhf.deb'.
dpkg-genchanges --build=any -mRaspbian nitrogen6x test autobuilder <root@raspbian.org> >../r-bioc-variantannotation_1.20.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-variantannotation-1.20.0
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2016-11-02T06:16:04Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-variantannotation_1.20.0-1_armhf.changes:
------------------------------------------------
Format: 1.8
Date: Thu, 27 Oct 2016 14:21:13 +0200
Source: r-bioc-variantannotation
Binary: r-bioc-variantannotation
Architecture: armhf
Version: 1.20.0-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian nitrogen6x test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-variantannotation - BioConductor annotation of genetic variants
Changes:
r-bioc-variantannotation (1.20.0-1) unstable; urgency=medium
.
* New upstream version
* Convert to dh-r
* Generic BioConductor homepage
Checksums-Sha1:
969d70217621205f895693a1d4204165803db72e 66462 r-bioc-variantannotation-dbgsym_1.20.0-1_armhf.deb
7324c52ffc91ed19c252bc99323a4523b1f68615 2220940 r-bioc-variantannotation_1.20.0-1_armhf.deb
Checksums-Sha256:
698b9a7b8eeb461c7db0bd86a6c7513e52e8bc8953c56f082cff7f59da463757 66462 r-bioc-variantannotation-dbgsym_1.20.0-1_armhf.deb
fde92821e554ecbbad10abf4d38909becffafdb508e148783293c1f91053cd44 2220940 r-bioc-variantannotation_1.20.0-1_armhf.deb
Files:
7711b02e7a0b393e3e29647a1990064d 66462 debug extra r-bioc-variantannotation-dbgsym_1.20.0-1_armhf.deb
5c27ba7d0957380d8dab84b2c54d6492 2220940 gnu-r optional r-bioc-variantannotation_1.20.0-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-variantannotation-dbgsym_1.20.0-1_armhf.deb
--------------------------------------------------
new debian package, version 2.0.
size 66462 bytes: control archive=501 bytes.
499 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-variantannotation-dbgsym
Source: r-bioc-variantannotation
Version: 1.20.0-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 95
Depends: r-bioc-variantannotation (= 1.20.0-1)
Section: debug
Priority: extra
Homepage: https://bioconductor.org/packages/VariantAnnotation/
Description: Debug symbols for r-bioc-variantannotation
Auto-Built-Package: debug-symbols
Build-Ids: d7565369d031f677265352953e2215ab76c03c44
drwxr-xr-x root/root 0 2016-10-27 12:21 ./
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/debug/.build-id/d7/
-rw-r--r-- root/root 86780 2016-10-27 12:21 ./usr/lib/debug/.build-id/d7/565369d031f677265352953e2215ab76c03c44.debug
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/share/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-10-27 12:21 ./usr/share/doc/r-bioc-variantannotation-dbgsym -> r-bioc-variantannotation
r-bioc-variantannotation_1.20.0-1_armhf.deb
-------------------------------------------
new debian package, version 2.0.
size 2220940 bytes: control archive=2939 bytes.
1088 bytes, 13 lines control
6902 bytes, 69 lines md5sums
Package: r-bioc-variantannotation
Version: 1.20.0-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2752
Depends: r-base-core (>= 3.3.1.20161024-1), r-api-3, r-bioc-biocgenerics (>= 0.15.3), r-bioc-genomeinfodb (>= 1.7.1), r-bioc-genomicranges (>= 1.19.47), r-bioc-summarizedexperiment (>= 0.3.1), r-bioc-rsamtools (>= 1.23.10), r-cran-dbi, r-bioc-biobase, r-bioc-s4vectors (>= 0.9.47), r-bioc-iranges (>= 2.3.25), r-bioc-xvector (>= 0.5.6), r-bioc-biostrings (>= 2.33.5), r-bioc-annotationdbi (>= 1.27.9), r-bioc-bsgenome (>= 1.37.6), r-bioc-rtracklayer (>= 1.25.16), r-bioc-genomicfeatures (>= 1.19.17), libc6 (>= 2.15), zlib1g (>= 1:1.2.3.3)
Suggests: r-cran-runit, r-bioc-annotationhub, r-bioc-snpstats, r-cran-ggplot2
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/VariantAnnotation/
Description: BioConductor annotation of genetic variants
This BioConductor package provides R functions to annotate variants,
compute amino acid coding changess and to predict coding outcomes.
drwxr-xr-x root/root 0 2016-10-27 12:21 ./
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/
-rw-r--r-- root/root 1768 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/CITATION
-rw-r--r-- root/root 1784 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/DESCRIPTION
-rw-r--r-- root/root 1563 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/INDEX
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/Meta/
-rw-r--r-- root/root 3274 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/Meta/Rd.rds
-rw-r--r-- root/root 3392 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/Meta/hsearch.rds
-rw-r--r-- root/root 2827 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/Meta/links.rds
-rw-r--r-- root/root 1578 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/Meta/nsInfo.rds
-rw-r--r-- root/root 1670 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/Meta/package.rds
-rw-r--r-- root/root 245 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/Meta/vignette.rds
-rw-r--r-- root/root 3272 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/NAMESPACE
-rw-r--r-- root/root 15611 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/NEWS
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/R/
-rw-r--r-- root/root 1056 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation
-rw-r--r-- root/root 715200 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation.rdb
-rw-r--r-- root/root 8791 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/R/VariantAnnotation.rdx
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/doc/
-rw-r--r-- root/root 9381 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.R
-rw-r--r-- root/root 21081 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.Rnw
-rw-r--r-- root/root 174459 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/doc/VariantAnnotation.pdf
-rw-r--r-- root/root 3032 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.R
-rw-r--r-- root/root 12570 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.Rnw
-rw-r--r-- root/root 123282 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/doc/filterVcf.pdf
-rw-r--r-- root/root 1976 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/doc/index.html
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/
-rw-r--r-- root/root 561698 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz
-rw-r--r-- root/root 655 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/chr22.vcf.gz.tbi
-rw-r--r-- root/root 113168 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz
-rw-r--r-- root/root 744 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/chr7-sub.vcf.gz.tbi
-rw-r--r-- root/root 1892 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/ex2.vcf
-rw-r--r-- root/root 24819 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/gl_chr1.vcf
-rw-r--r-- root/root 124778 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz
-rw-r--r-- root/root 441 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/h1187-10k.vcf.gz.tbi
-rw-r--r-- root/root 374336 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz
-rw-r--r-- root/root 4503 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/hapmap_exome_chr22.vcf.gz.tbi
-rw-r--r-- root/root 3060 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/extdata/structural.vcf
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/help/
-rw-r--r-- root/root 14903 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/help/AnIndex
-rw-r--r-- root/root 182330 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdb
-rw-r--r-- root/root 794 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/help/VariantAnnotation.rdx
-rw-r--r-- root/root 2890 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/help/aliases.rds
-rw-r--r-- root/root 409 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/help/paths.rds
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/html/
-rw-r--r-- root/root 35420 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/html/00Index.html
-rw-r--r-- root/root 1335 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/html/R.css
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/libs/
-rw-r--r-- root/root 108836 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/libs/VariantAnnotation.so
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/scripts/
-rw-r--r-- root/root 10914 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/scripts/test_Rplinkseq.R
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/
-rw-r--r-- root/root 602 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/FORMAT_header_no_SAMPLEs.vcf
-rw-r--r-- root/root 3074 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/VarScan_header.vcf
-rw-r--r-- root/root 3700 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/banded_gvcf.vcf
-rw-r--r-- root/root 1836 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/expand.vcf
-rw-r--r-- root/root 614 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/fewer-FORMAT-than-GENO.vcf
-rw-r--r-- root/root 553 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/missing-FORMAT-metadata-elt.vcf
-rw-r--r-- root/root 2970 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/mixedStructural.vcf
-rw-r--r-- root/root 439 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/multiple_INFO_fields.vcf
-rw-r--r-- root/root 3044 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/negative_FORMAT_Number.vcf
-rw-r--r-- root/root 287 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_FORMAT_column.vcf
-rw-r--r-- root/root 573 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_GENO_row.vcf
-rw-r--r-- root/root 300 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/no_INFO_header.vcf
-rw-r--r-- root/root 1679 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/cases/unspecified_INFO_FORMAT_fields.vcf
-rw-r--r-- root/root 2878 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_ScanVcfParam-class.R
-rw-r--r-- root/root 9584 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_VCF-class.R
-rw-r--r-- root/root 10998 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_VRanges-class.R
-rw-r--r-- root/root 2068 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_expand-methods.R
-rw-r--r-- root/root 5030 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_filterVcf.R
-rw-r--r-- root/root 7740 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_genotypeToSnpMatrix.R
-rw-r--r-- root/root 3839 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_isSNV.R
-rw-r--r-- root/root 9170 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_readVcf-methods.R
-rw-r--r-- root/root 4362 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_scanVcf.R
-rw-r--r-- root/root 1355 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_snpSummary.R
-rw-r--r-- root/root 635 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_summarizeVariants-methods.R
-rw-r--r-- root/root 3770 2016-10-27 12:21 ./usr/lib/R/site-library/VariantAnnotation/unitTests/test_writeVcf-methods.R
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/share/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/share/doc/
drwxr-xr-x root/root 0 2016-10-27 12:21 ./usr/share/doc/r-bioc-variantannotation/
-rw-r--r-- root/root 1506 2014-07-24 07:42 ./usr/share/doc/r-bioc-variantannotation/README.test
-rw-r--r-- root/root 463 2016-10-27 12:21 ./usr/share/doc/r-bioc-variantannotation/changelog.Debian.gz
-rw-r--r-- root/root 5396 2016-10-27 12:20 ./usr/share/doc/r-bioc-variantannotation/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 7692
Build-Time: 365
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 916
Job: r-bioc-variantannotation_1.20.0-1
Machine Architecture: armhf
Package: r-bioc-variantannotation
Package-Time: 1332
Source-Version: 1.20.0-1
Space: 7692
Status: successful
Version: 1.20.0-1
--------------------------------------------------------------------------------
Finished at 2016-11-02T06:16:04Z
Build needed 00:22:12, 7692k disc space