Build log for r-bioc-tfbstools (1.36.0+dfsg-2) on armhf

r-bioc-tfbstools → 1.36.0+dfsg-2 → armhf → 2022-12-07 12:28:29

sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02

+==============================================================================+
| r-bioc-tfbstools 1.36.0+dfsg-2 (armhf)       Wed, 07 Dec 2022 11:37:27 +0000 |
+==============================================================================+

Package: r-bioc-tfbstools
Version: 1.36.0+dfsg-2
Source Version: 1.36.0+dfsg-2
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-c0731d1e-e33c-4b3d-a77e-4ea72c6ca160' with '<<CHROOT>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.5 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [14.3 MB]
Fetched 27.8 MB in 30s (915 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-tfbstools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 124 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-tfbstools 1.36.0+dfsg-2 (dsc) [2473 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-tfbstools 1.36.0+dfsg-2 (tar) [118 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-tfbstools 1.36.0+dfsg-2 (diff) [3684 B]
Fetched 124 kB in 0s (1046 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-tfbstools-2vf3Kj/r-bioc-tfbstools-1.36.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-tfbstools-2vf3Kj' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install build-essential                                                      |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-kZkkKC/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-kZkkKC/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-kZkkKC/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg:               imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg:              unchanged: 1
gpg:       secret keys read: 1
gpg:   secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ Packages [433 B]
Fetched 2109 B in 1s (2381 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install core build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap libperl5.34 netbase perl-modules-5.34
  sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 83 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 852 B in 0s (16.9 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15027 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-bsgenome, r-cran-catools, r-bioc-cner, r-bioc-dirichletmultinomial, r-bioc-genomeinfodb, r-bioc-genomicranges, r-cran-gtools, r-bioc-iranges, r-cran-dbi, r-cran-rsqlite, r-bioc-rtracklayer, r-bioc-seqlogo, r-bioc-s4vectors, r-cran-tfmpvalue, r-cran-xml, r-bioc-xvector
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-bsgenome, r-cran-catools, r-bioc-cner, r-bioc-dirichletmultinomial, r-bioc-genomeinfodb, r-bioc-genomicranges, r-cran-gtools, r-bioc-iranges, r-cran-dbi, r-cran-rsqlite, r-bioc-rtracklayer, r-bioc-seqlogo, r-bioc-s4vectors, r-cran-tfmpvalue, r-cran-xml, r-bioc-xvector
dpkg-deb: building package 'sbuild-build-depends-r-bioc-tfbstools-dummy' in '/<<BUILDDIR>>/resolver-kZkkKC/apt_archive/sbuild-build-depends-r-bioc-tfbstools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning:   sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-tfbstools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ Sources [644 B]
Get:5 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ Packages [727 B]
Fetched 2704 B in 1s (3264 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...

Install r-bioc-tfbstools build dependencies (apt-based resolver)
----------------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libldap-common libpam-cap libperl5.34 netbase perl-modules-5.34
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils bsdutils
  ca-certificates cpp-12 dctrl-tools debhelper dh-autoreconf dh-r
  dh-strip-nondeterminism dwz file fontconfig fontconfig-config
  fonts-dejavu-core g++-12 gcc-12 gcc-12-base gettext gettext-base gfortran
  gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
  libarchive-zip-perl libasan8 libatomic1 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libblas-dev libblas3 libblkid1 libboost-dev
  libboost-iostreams1.74.0 libboost1.74-dev libbrotli1 libbsd0 libbz2-dev
  libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl libclass-load-xs-perl
  libclone-perl libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1
  libdebhelper-perl libdeflate0 libdevel-callchecker-perl
  libdevel-globaldestruction-perl libdevel-overloadinfo-perl
  libdevel-stacktrace-perl libdist-checkconflicts-perl
  libdynaloader-functions-perl libelf1 libencode-locale-perl
  libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
  libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-12-dev
  libgcc-s1 libgfortran-12-dev libgfortran5 libglib2.0-0 libgomp1
  libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libhttp-date-perl
  libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0
  libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
  liblerc4 liblwp-mediatypes-perl liblzma-dev liblzma5 libmagic-mgc libmagic1
  libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl
  libmodule-runtime-perl libmoose-perl libmount1 libmro-compat-perl
  libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
  libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-8-0
  libpcre2-dev libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5
  libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
  libreadline-dev libreadline8 libregexp-ipv6-perl librtmp1 libsm6
  libsmartcols1 libssh2-1 libssl3 libstdc++-12-dev libstdc++6
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
  libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtk8.6 libtool
  libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libuuid1
  libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
  libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
  libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mount
  openssl pkg-config pkgconf pkgconf-bin po-debconf r-base-core r-base-dev
  r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase r-bioc-biocgenerics
  r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings r-bioc-bsgenome
  r-bioc-cner r-bioc-delayedarray r-bioc-dirichletmultinomial
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
  r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest
  r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
  r-bioc-s4vectors r-bioc-seqlogo r-bioc-summarizedexperiment r-bioc-xvector
  r-bioc-zlibbioc r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64
  r-cran-bitops r-cran-blob r-cran-cachem r-cran-catools r-cran-cli
  r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon
  r-cran-curl r-cran-dbi r-cran-digest r-cran-ellipsis r-cran-fansi
  r-cran-farver r-cran-fastmap r-cran-formatr r-cran-futile.logger
  r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools
  r-cran-hms r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-labeling
  r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler
  r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
  r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl
  r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr
  r-cran-png r-cran-powerlaw r-cran-pracma r-cran-prettyunits r-cran-progress
  r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer
  r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr
  r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow
  r-cran-stringi r-cran-stringr r-cran-sys r-cran-tfmpvalue r-cran-tibble
  r-cran-tidyselect r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite
  r-cran-vroom r-cran-withr r-cran-xml r-cran-xtable r-cran-yaml
  readline-common ucf unzip util-linux util-linux-extra x11-common xauth
  xdg-utils xz-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc gcc-12-locales cpp-12-doc
  debtags dh-make postgresql-client-common gcc-12-doc gettext-doc
  libasprintf-dev libgettextpo-dev gfortran-doc gfortran-12-doc
  libcoarrays-dev groff liblapack-doc libboost-doc libboost1.74-doc
  libboost-atomic1.74-dev libboost-chrono1.74-dev libboost-container1.74-dev
  libboost-context1.74-dev libboost-contract1.74-dev
  libboost-coroutine1.74-dev libboost-date-time1.74-dev
  libboost-exception1.74-dev libboost-fiber1.74-dev
  libboost-filesystem1.74-dev libboost-graph1.74-dev
  libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
  libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
  libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
  libboost-program-options1.74-dev libboost-python1.74-dev
  libboost-random1.74-dev libboost-regex1.74-dev
  libboost-serialization1.74-dev libboost-stacktrace1.74-dev
  libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
  libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
  libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
  low-memory-monitor gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html
  icu-doc liblzma-doc cryptsetup-bin ncurses-doc libscalar-number-perl
  readline-doc libstdc++-12-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
  libbusiness-isbn-perl libwww-perl libcurl4-gnutls-dev m4-doc apparmor less
  www-browser nfs-common libmail-box-perl elpa-ess r-doc-info | r-doc-pdf
  r-mathlib r-base-html texlive-base texlive-latex-base texlive-plain-generic
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
  texlive-latex-recommended texlive-latex-extra texinfo r-bioc-genefilter
  r-bioc-org.hs.eg.db r-cran-runit r-bioc-graph r-bioc-biocstyle r-cran-knitr
  r-bioc-all r-bioc-affy r-bioc-deseq2 r-cran-testthat r-cran-rmarkdown
  r-cran-foreach r-cran-batchjobs r-cran-bbmisc r-cran-doparallel r-cran-rmpi
  r-bioc-variantannotation r-bioc-shortread r-cran-batchtools
  r-cran-data.table r-bioc-genomicfeatures r-cran-biocmanager r-bioc-gviz
  r-bioc-hdf5array r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-edger
  r-bioc-annotationhub r-bioc-dexseq r-cran-markdown r-bioc-sparsematrixstats
  r-bioc-limma r-bioc-rhdf5 r-cran-roxygen2 r-cran-ff r-cran-covr r-cran-rpart
  r-cran-callr r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps
  r-cran-rprojroot r-cran-rstudioapi r-cran-whoami r-cran-kernsmooth
  r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shiny r-cran-shinyjs
  r-cran-dplyr r-cran-jpeg r-cran-viridis r-cran-bench r-cran-desc
  r-cran-spelling r-cran-rmysql r-cran-unitizer r-cran-forcats r-cran-waldo
  r-cran-profvis r-cran-lubridate r-cran-httpuv r-cran-xml2 r-cran-magick
  r-cran-sf r-cran-r.rsp r-cran-lintr r-cran-tidyverse r-cran-getopt
  r-cran-base64enc r-cran-r.devices r-cran-formattable r-cran-nanotime
  r-cran-palmerpenguins r-cran-survival r-cran-units r-cran-vdiffr
  r-cran-iterators r-cran-itertools r-cran-quadprog r-cran-inline r-cran-fs
  r-cran-usethis r-cran-gert r-cran-gh r-cran-rvest r-cran-dichromat
  r-cran-rlecuyer r-cran-brio r-cran-evaluate r-cran-pkgbuild r-cran-pkgload
  r-cran-purrr r-cran-tidyr r-cran-pkgdown r-cran-zeallot r-cran-plm
  r-cran-zoo dosfstools kbd util-linux-locales
Recommended packages:
  devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
  libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
  libglib2.0-data shared-mime-info xdg-user-dirs libdevel-partialdump-perl
  libgpm2 libpng-tools publicsuffix libltdl-dev uuid-runtime
  libmail-sendmail-perl r-recommended r-doc-html r-bioc-biovizbase
  r-cran-testthat r-cran-mockery r-cran-decor r-cran-knitr r-cran-brio
  r-cran-httpuv r-cran-webutils r-cran-testit r-cran-survival r-cran-covr
  r-cran-ragg r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-interp
  r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg
  r-cran-rmarkdown r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr
  r-cran-xml2 r-cran-sp r-cran-runit r-cran-sodium r-cran-lubridate
  r-cran-domc r-cran-abind r-cran-dbitest r-cran-htmltools r-cran-htmlwidgets
  r-cran-data.table r-cran-mockr r-cran-formattable r-cran-generics
  r-cran-waldo libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
  x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
  gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
  libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
  libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
  libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
  libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
  libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
  libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libhttp-date-perl
  libhttp-message-perl libice6 libicu-dev libicu72 libio-html-perl libjbig0
  libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
  liblerc4 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
  libmodule-implementation-perl libmodule-runtime-conflicts-perl
  libmodule-runtime-perl libmoose-perl libmro-compat-perl
  libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
  libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
  libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
  libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5 libreadline-dev
  libregexp-ipv6-perl librtmp1 libsm6 libssh2-1 libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
  libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
  libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
  libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
  libxss1 libxt6 m4 man-db openssl pkg-config pkgconf pkgconf-bin po-debconf
  r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
  r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings
  r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray r-bioc-dirichletmultinomial
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
  r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest
  r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
  r-bioc-s4vectors r-bioc-seqlogo r-bioc-summarizedexperiment r-bioc-xvector
  r-bioc-zlibbioc r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64
  r-cran-bitops r-cran-blob r-cran-cachem r-cran-catools r-cran-cli
  r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon
  r-cran-curl r-cran-dbi r-cran-digest r-cran-ellipsis r-cran-fansi
  r-cran-farver r-cran-fastmap r-cran-formatr r-cran-futile.logger
  r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools
  r-cran-hms r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-labeling
  r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler
  r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
  r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl
  r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr
  r-cran-png r-cran-powerlaw r-cran-pracma r-cran-prettyunits r-cran-progress
  r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer
  r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr
  r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow
  r-cran-stringi r-cran-stringr r-cran-sys r-cran-tfmpvalue r-cran-tibble
  r-cran-tidyselect r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite
  r-cran-vroom r-cran-withr r-cran-xml r-cran-xtable r-cran-yaml
  sbuild-build-depends-r-bioc-tfbstools-dummy ucf unzip x11-common xauth
  xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  bsdutils cpp-12 g++-12 gcc-12 gcc-12-base libasan8 libatomic1 libblkid1
  libboost-iostreams1.74.0 libcc1-0 libgcc-12-dev libgcc-s1 libgomp1 liblzma5
  libmount1 libpcre2-8-0 libreadline8 libsmartcols1 libssl3 libstdc++-12-dev
  libstdc++6 libubsan1 libuuid1 mount readline-common util-linux
  util-linux-extra xz-utils
28 upgraded, 290 newly installed, 0 to remove and 55 not upgraded.
Need to get 284 MB of archives.
After this operation, 713 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-kZkkKC/apt_archive ./ sbuild-build-depends-r-bioc-tfbstools-dummy 0.invalid.0 [1012 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf bsdutils armhf 1:2.38.1-4 [83.9 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libsmartcols1 armhf 2.38.1-4 [91.6 kB]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf util-linux-extra armhf 2.38.1-4 [98.1 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf util-linux armhf 2.38.1-4 [1062 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf mount armhf 2.38.1-4 [126 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf readline-common all 8.2-1.2 [68.5 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.2.0-9+rpi1 [32.2 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.2.0-9+rpi1 [95.4 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.2.0-9+rpi1 [8224 B]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libasan8 armhf 12.2.0-9+rpi1 [2089 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.2.0-9+rpi1 [861 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.2.0-9+rpi1 [37.2 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.2.0-9+rpi1 [504 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf g++-12 armhf 12.2.0-9+rpi1 [7913 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-12-dev armhf 12.2.0-9+rpi1 [2025 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf libgcc-12-dev armhf 12.2.0-9+rpi1 [725 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf gcc-12 armhf 12.2.0-9+rpi1 [14.2 MB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf cpp-12 armhf 12.2.0-9+rpi1 [7156 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.2.0-9+rpi1 [36.1 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libblkid1 armhf 2.38.1-4 [131 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf liblzma5 armhf 5.2.8-0.0 [175 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf libmount1 armhf 2.38.1-4 [144 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.40-2 [222 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libreadline8 armhf 8.2-1.2 [142 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf libuuid1 armhf 2.38.1-4 [27.1 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-9 [774 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38.1-4 [78.8 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.11.1-1 [1341 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf libssl3 armhf 3.0.7-1 [1614 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 3.0.7-1 [1349 kB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-10 [156 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf xz-utils armhf 5.2.8-0.0 [333 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.19-1 [260 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-10 [495 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.11.1 [80.8 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-5 [517 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-2 [8556 B]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-2+rpi2 [177 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14+20220924-2 [93.1 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.1 [570 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-10 [1203 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.11.1 [941 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-27 [152 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.5.0-1 [77.2 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.39-2 [258 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-3 [352 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config armhf 2.13.1-4.5 [281 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.5 [330 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-2 [28.6 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.7-1 [112 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.8.1-2 [308 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.8.1-2 [704 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-6 [496 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.50.0-1 [65.0 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3+b1 [161 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.86.0-2 [322 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.74.1-2 [1214 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.2.0-9+rpi1 [238 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.5 [416 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 5.2.0-2+b1 [1832 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.10+ds-1 [214 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.10+ds-1 [68.6 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.10+ds-1 [58.3 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-1 [906 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.14-1 [50.9 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf liblerc4 armhf 4.0.0+ds-2 [133 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2+b1 [237 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.4.0-6 [278 kB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.13-1 [680 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.2.20221110-1 [25.6 MB]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-12-dev armhf 12.2.0-9+rpi1 [285 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf gfortran-12 armhf 12.2.0-9+rpi1 [7509 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:12.2.0-1+rpi1 [1432 B]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.2-1.2 [122 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-2 [208 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-2 [199 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-2 [53.2 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-2 [644 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4.1 [183 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.39-2 [336 kB]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.8-0.0 [232 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf libpkgconf3 armhf 1.8.0-11 [30.8 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf pkgconf-bin armhf 1.8.0-11 [27.6 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf pkgconf armhf 1.8.0-11 [25.6 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 1.8.0-11 [13.4 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.2.20221110-1 [4488 B]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libregexp-ipv6-perl all 0.03-3 [5212 B]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.17-1 [90.4 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.44-1 [81.7 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-3 [9724 B]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-1 [12.6 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-2+b1 [12.2 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-2 [16.8 kB]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b2 [794 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.86.0-2 [318 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-8+b1 [55.9 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-17+b1 [9508 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b4 [4824 B]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf libboost-iostreams1.74.0 armhf 1.74.0-17+b1 [235 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.7.1+dfsg-3 [81.4 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf libgsl27 armhf 2.7.1+dfsg-3 [758 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.44.0-2 [600 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.58.0-2 [2111 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.36.0-1 [2036 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.32.0-1 [2214 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dbi all 1.1.3-1 [687 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit armhf 4.0.5-1 [1066 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rlang armhf 1.0.6-1 [1621 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cli armhf 3.4.1-1 [1242 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.3+dfsg-1 [109 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.5.1-1 [1318 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf r-cran-blob all 1.2.3-1 [49.5 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fastmap armhf 1.1.0-1 [63.1 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cachem armhf 1.0.6-1 [70.5 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.17-1 [92.5 kB]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.9-1 [2036 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rsqlite armhf 2.2.19-1 [1005 kB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf r-cran-curl armhf 4.3.3+dfsg-1 [152 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf r-cran-jsonlite armhf 1.8.3+dfsg-1 [439 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sys armhf 3.4.1-1 [42.4 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf r-cran-askpass armhf 1.1-2 [22.3 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf r-cran-openssl armhf 2.0.4+dfsg-1 [389 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf r-cran-httr all 1.4.4+dfsg-1 [467 kB]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf r-cran-png armhf 0.1-7-4 [39.9 kB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.44.0+dfsg-1 [9200 B]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.38.0-1 [606 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.9+dfsg-1 [776 kB]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.9-1 [11.7 MB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.34.3-1 [3920 kB]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biostrings armhf 2.66.0-1 [13.8 MB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-keggrest all 1.38.0+dfsg-1 [179 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-annotationdbi all 1.60.0-1 [4696 kB]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xml armhf 3.99-0.12-1 [1721 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-annotate all 1.76.0+dfsg-1 [1727 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocio all 1.8.0+dfsg-1 [201 kB]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf r-cran-formatr all 1.12-1 [151 kB]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf r-cran-codetools all 0.2-18-1 [91.8 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cpp11 all 0.4.3-1 [223 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocparallel armhf 1.32.4-1 [1313 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicranges armhf 1.50.1+dfsg-1 [1797 kB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rhtslib armhf 2.0.0+dfsg-1 [1189 kB]
Get:261 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rsamtools armhf 2.14.0-1 [3675 kB]
Get:262 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.63.0-1 [453 kB]
Get:263 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-matrixgenerics all 1.10.0-1 [302 kB]
Get:264 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:265 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.5-1-1 [3685 kB]
Get:266 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-delayedarray armhf 0.24.0+dfsg-1 [1925 kB]
Get:267 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-summarizedexperiment all 1.28.0+dfsg-1 [2018 kB]
Get:268 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicalignments armhf 1.34.0-1 [2109 kB]
Get:269 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rjson armhf 0.2.21-1 [137 kB]
Get:270 http://172.17.4.1/private bookworm-staging/main armhf r-cran-yaml armhf 2.3.6-1 [92.2 kB]
Get:271 http://172.17.4.1/private bookworm-staging/main armhf r-cran-restfulr armhf 0.0.15-1 [348 kB]
Get:272 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rtracklayer armhf 1.58.0-1 [5072 kB]
Get:273 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-bsgenome all 1.66.1-1 [6986 kB]
Get:274 http://172.17.4.1/private bookworm-staging/main armhf r-cran-clipr all 0.8.0-1 [53.0 kB]
Get:275 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:276 http://172.17.4.1/private bookworm-staging/main armhf r-cran-hms all 1.1.2-1 [104 kB]
Get:277 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fansi armhf 1.0.3-1 [611 kB]
Get:278 http://172.17.4.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:279 http://172.17.4.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.2-1 [129 kB]
Get:280 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pillar all 1.8.1+dfsg-1 [463 kB]
Get:281 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.1.8+dfsg-1 [516 kB]
Get:282 http://172.17.4.1/private bookworm-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:283 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tidyselect armhf 1.2.0+dfsg-1 [222 kB]
Get:284 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tzdb armhf 0.3.0-1 [476 kB]
Get:285 http://172.17.4.1/private bookworm-staging/main armhf r-cran-prettyunits all 1.1.1-2 [39.1 kB]
Get:286 http://172.17.4.1/private bookworm-staging/main armhf r-cran-progress all 1.2.2-2 [88.9 kB]
Get:287 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vroom armhf 1.6.0-1 [796 kB]
Get:288 http://172.17.4.1/private bookworm-staging/main armhf r-cran-readr armhf 2.1.3-1 [755 kB]
Get:289 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plyr armhf 1.8.8-1 [831 kB]
Get:290 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.8-1+b1 [837 kB]
Get:291 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringr all 1.4.1-1 [202 kB]
Get:292 http://172.17.4.1/private bookworm-staging/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB]
Get:293 http://172.17.4.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.30-2 [177 kB]
Get:294 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gtable all 0.3.1+dfsg-1 [165 kB]
Get:295 http://172.17.4.1/private bookworm-staging/main armhf r-cran-isoband armhf 0.2.6-1 [1759 kB]
Get:296 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-58.1-1 [1126 kB]
Get:297 http://172.17.4.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.160-1 [2241 kB]
Get:298 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mgcv armhf 1.8-41-1 [3132 kB]
Get:299 http://172.17.4.1/private bookworm-staging/main armhf r-cran-farver armhf 2.1.1-1 [1390 kB]
Get:300 http://172.17.4.1/private bookworm-staging/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB]
Get:301 http://172.17.4.1/private bookworm-staging/main armhf r-cran-colorspace armhf 2.0-3+dfsg-1 [1697 kB]
Get:302 http://172.17.4.1/private bookworm-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:303 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get:304 http://172.17.4.1/private bookworm-staging/main armhf r-cran-viridislite all 0.4.1-1 [1299 kB]
Get:305 http://172.17.4.1/private bookworm-staging/main armhf r-cran-scales all 1.2.1-1 [614 kB]
Get:306 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ggplot2 all 3.3.6+dfsg-1 [3213 kB]
Get:307 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pracma all 2.4.2-1 [1699 kB]
Get:308 http://172.17.4.1/private bookworm-staging/main armhf r-cran-powerlaw all 0.70.6-2 [3367 kB]
Get:309 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-go.db all 3.16.0-1 [12.4 MB]
Get:310 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r.methodss3 all 1.8.2-1 [84.5 kB]
Get:311 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r.oo all 1.25.0-1 [959 kB]
Get:312 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r.utils all 2.12.2-1 [1391 kB]
Get:313 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-cner armhf 1.34.0+dfsg-1 [8383 kB]
Get:314 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-dirichletmultinomial armhf 1.40.0-1 [601 kB]
Get:315 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-seqlogo all 1.64.0+dfsg-1 [155 kB]
Get:316 http://172.17.4.1/private bookworm-staging/main armhf r-cran-catools armhf 1.18.2-1 [200 kB]
Get:317 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gtools armhf 3.9.4-1 [360 kB]
Get:318 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tfmpvalue armhf 0.0.9-1 [50.6 kB]
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
Setting up libbz2-dev:armhf (1.0.8-5+b2) ...
Setting up automake (1:1.16.5-1.3) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.0-2) ...
Setting up libpaper1:armhf (1.1.28) ...

Creating config file /etc/papersize with new version
Setting up libice6:armhf (2:1.0.10-1) ...
Setting up libhttp-date-perl (6.05-2) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up liblapack3:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.3+20220423-2) ...
Setting up libxcb1:armhf (1.15-1) ...
Setting up gettext (0.21-10) ...
Setting up libpcre2-dev:armhf (10.40-2) ...
Setting up libtool (2.4.7-5) ...
Setting up libxcb-render0:armhf (1.15-1) ...
Setting up libpcre3-dev:armhf (2:8.39-14) ...
Setting up fontconfig-config (2.13.1-4.5) ...
Setting up libpng-dev:armhf (1.6.39-2) ...
Setting up libssl3:armhf (3.0.7-1) ...
Setting up libjpeg-dev:armhf (1:2.1.2-1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.28) ...
Setting up libclass-c3-perl (0.35-2) ...
Setting up libreadline-dev:armhf (8.2-1.2) ...
Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.0-11) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up libfreetype6:armhf (2.12.1+dfsg-3) ...
Setting up libgcc-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up liblapack-dev:armhf (3.10.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libdata-optlist-perl (0.112-1) ...
Setting up pkg-config:armhf (1.8.0-11) ...
Setting up dh-strip-nondeterminism (1.13.0-2) ...
Setting up dwz (0.14+20220924-2) ...
Setting up groff-base (1.22.4-9) ...
Setting up libncurses5-dev:armhf (6.3+20220423-2) ...
Setting up libx11-6:armhf (2:1.8.1-2) ...
Setting up libharfbuzz0b:armhf (5.2.0-2+b1) ...
Setting up libssh2-1:armhf (1.10.0-3+b1) ...
Setting up libmro-compat-perl (0.15-1) ...
Setting up openssl (3.0.7-1) ...
Setting up libsm6:armhf (2:1.2.3-1) ...
Setting up libxmuu1:armhf (2:1.1.3-3) ...
Setting up libsub-exporter-perl (0.988-1) ...
Setting up libhttp-message-perl (6.44-1) ...
Setting up libeval-closure-perl (0.14-3) ...
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up libstdc++-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libcurl3-gnutls:armhf (7.86.0-2) ...
Setting up libgfortran-12-dev:armhf (12.2.0-9+rpi1) ...
Setting up man-db (2.11.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
127 added, 0 removed; done.
Setting up gcc-12 (12.2.0-9+rpi1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up libdist-checkconflicts-perl (0.11-2) ...
Setting up libxt6:armhf (1:1.2.1-1) ...
Setting up xauth (1:1.1.1-1) ...
Setting up libcurl4:armhf (7.86.0-2) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up g++-12 (12.2.0-9+rpi1) ...
Setting up libboost1.74-dev:armhf (1.74.0-17+b1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libwww-curl-perl:armhf (4.17-8+b1) ...
Setting up debhelper (13.11.1) ...
Setting up libmodule-runtime-conflicts-perl (0.003-2) ...
Setting up libclass-load-perl (0.25-1) ...
Setting up gfortran-12 (12.2.0-9+rpi1) ...
Setting up libpackage-deprecationmanager-perl (0.17-2) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libboost-dev:armhf (1.74.0.3+b4) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-cran-bh (1.74.0-2) ...
Setting up libmoose-perl:armhf (2.2200-1+b2) ...
Setting up gfortran (4:12.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Processing triggers for sgml-base (1.31) ...
Setting up libfontconfig1:armhf (2.13.1-4.5) ...
Setting up fontconfig (2.13.1-4.5) ...
Regenerating fonts cache... done.
Setting up libxft2:armhf (2.3.6-1) ...
Setting up libtk8.6:armhf (8.6.13-1) ...
Processing triggers for libc-bin (2.35-2+rpi1) ...
Setting up libpango-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libcairo2:armhf (1.16.0-6) ...
Setting up libpangoft2-1.0-0:armhf (1.50.10+ds-1) ...
Setting up libpangocairo-1.0-0:armhf (1.50.10+ds-1) ...
Setting up r-base-core (4.2.2.20221110-1) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-gtable (0.3.1+dfsg-1) ...
Setting up r-cran-labeling (0.4.2-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.20-45-3) ...
Setting up r-cran-nlme (3.1.160-1) ...
Setting up r-cran-farver (2.1.1-1) ...
Setting up r-cran-formatr (1.12-1) ...
Setting up r-cran-xml (3.99-0.12-1) ...
Setting up r-cran-viridislite (0.4.1-1) ...
Setting up r-cran-clipr (0.8.0-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.9-1) ...
Setting up r-cran-littler (0.3.17-1) ...
Setting up r-cran-rcpp (1.0.9-1) ...
Setting up r-cran-curl (4.3.3+dfsg-1) ...
Setting up r-cran-codetools (0.2-18-1) ...
Setting up r-bioc-biocgenerics (0.44.0-2) ...
Setting up r-cran-rlang (1.0.6-1) ...
Setting up r-cran-matrixstats (0.63.0-1) ...
Setting up r-base-dev (4.2.2.20221110-1) ...
Setting up r-cran-pracma (2.4.2-1) ...
Setting up r-bioc-matrixgenerics (1.10.0-1) ...
Setting up r-cran-sys (3.4.1-1) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-mime (0.12-1) ...
Setting up r-cran-digest (0.6.30-2) ...
Setting up r-cran-yaml (2.3.6-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-dbi (1.1.3-1) ...
Setting up r-cran-prettyunits (1.1.1-2) ...
Setting up r-cran-fansi (1.0.3-1) ...
Setting up r-cran-mass (7.3-58.1-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-gtools (3.9.4-1) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-bit (4.0.5-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-cli (3.4.1-1) ...
Setting up r-cran-lifecycle (1.0.3+dfsg-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-bioc-zlibbioc (1.44.0+dfsg-1) ...
Setting up r-cran-askpass (1.1-2) ...
Setting up r-cran-fastmap (1.1.0-1) ...
Setting up r-cran-png (0.1-7-4) ...
Setting up r-cran-r.methodss3 (1.8.2-1) ...
Setting up r-bioc-biobase (2.58.0-2) ...
Setting up r-cran-jsonlite (1.8.3+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.2-1) ...
Setting up r-cran-colorspace (2.0-3+dfsg-1) ...
Setting up r-cran-stringi (1.7.8-1+b1) ...
Setting up r-cran-cpp11 (0.4.3-1) ...
Setting up r-cran-plyr (1.8.8-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-bioc-s4vectors (0.36.0-1) ...
Setting up r-cran-isoband (0.2.6-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up r-cran-matrix (1.5-1-1) ...
Setting up r-cran-mgcv (1.8-41-1) ...
Setting up r-cran-powerlaw (0.70.6-2) ...
Setting up r-cran-cachem (1.0.6-1) ...
Setting up r-cran-tfmpvalue (0.0.9-1) ...
Setting up r-cran-catools (1.18.2-1) ...
Setting up r-bioc-iranges (2.32.0-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-rjson (0.2.21-1) ...
Setting up r-cran-tzdb (0.3.0-1) ...
Setting up r-cran-rcurl (1.98-1.9+dfsg-1) ...
Setting up r-bioc-seqlogo (1.64.0+dfsg-1) ...
Setting up r-cran-restfulr (0.0.15-1) ...
Setting up r-cran-vctrs (0.5.1-1) ...
Setting up r-bioc-delayedarray (0.24.0+dfsg-1) ...
Setting up r-cran-pillar (1.8.1+dfsg-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-openssl (2.0.4+dfsg-1) ...
Setting up r-cran-stringr (1.4.1-1) ...
Setting up r-bioc-biocparallel (1.32.4-1) ...
Setting up r-bioc-rhtslib (2.0.0+dfsg-1) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-cran-tibble (3.1.8+dfsg-1) ...
Setting up r-bioc-dirichletmultinomial (1.40.0-1) ...
Setting up r-bioc-biocio (1.8.0+dfsg-1) ...
Setting up r-cran-r.oo (1.25.0-1) ...
Setting up r-cran-tidyselect (1.2.0+dfsg-1) ...
Setting up r-cran-reshape2 (1.4.4-2) ...
Setting up r-bioc-genomeinfodb (1.34.3-1) ...
Setting up r-cran-httr (1.4.4+dfsg-1) ...
Setting up r-cran-hms (1.1.2-1) ...
Setting up r-cran-scales (1.2.1-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-blob (1.2.3-1) ...
Setting up r-bioc-xvector (0.38.0-1) ...
Setting up r-cran-rsqlite (2.2.19-1) ...
Setting up r-cran-progress (1.2.2-2) ...
Setting up r-cran-r.utils (2.12.2-1) ...
Setting up r-cran-vroom (1.6.0-1) ...
Setting up r-cran-ggplot2 (3.3.6+dfsg-1) ...
Setting up r-bioc-genomicranges (1.50.1+dfsg-1) ...
Setting up r-bioc-biostrings (2.66.0-1) ...
Setting up r-cran-readr (2.1.3-1) ...
Setting up r-bioc-rsamtools (2.14.0-1) ...
Setting up r-bioc-summarizedexperiment (1.28.0+dfsg-1) ...
Setting up r-bioc-keggrest (1.38.0+dfsg-1) ...
Setting up r-bioc-annotationdbi (1.60.0-1) ...
Setting up r-bioc-go.db (3.16.0-1) ...
Setting up r-bioc-annotate (1.76.0+dfsg-1) ...
Setting up r-bioc-genomicalignments (1.34.0-1) ...
Setting up r-bioc-rtracklayer (1.58.0-1) ...
Setting up r-bioc-cner (1.34.0+dfsg-1) ...
Setting up r-bioc-bsgenome (1.66.1-1) ...
Setting up sbuild-build-depends-r-bioc-tfbstools-dummy (0.invalid.0) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Processing triggers for libc-bin (2.35-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.39-6+rpi1 dpkg-dev_1.21.9+rpi1 g++-12_12.2.0-9+rpi1 gcc-12_12.2.0-9+rpi1 libc6-dev_2.35-2+rpi1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 linux-libc-dev_5.19.6-1+rpi1
Package versions: adduser_3.129 apt_2.5.3 aptitude_0.8.13-5 aptitude-common_0.8.13-5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3+rpi1 base-passwd_3.6.1 bash_5.2~rc2-2 binutils_2.39-6+rpi1 binutils-arm-linux-gnueabihf_2.39-6+rpi1 binutils-common_2.39-6+rpi1 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20211016 coreutils_9.1-1 cpp_4:12.2.0-1+rpi1 cpp-12_12.2.0-9+rpi1 dash_0.5.11+git20210903+057cd650a4ed-9 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.11.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dirmngr_2.2.39-1 dpkg_1.21.9+rpi1 dpkg-dev_1.21.9+rpi1 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 fontconfig_2.13.1-4.5 fontconfig-config_2.13.1-4.5 fonts-dejavu-core_2.37-2 g++_4:12.2.0-1+rpi1 g++-12_12.2.0-9+rpi1 gcc_4:12.2.0-1+rpi1 gcc-12_12.2.0-9+rpi1 gcc-12-base_12.2.0-9+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-10 gettext-base_0.21-10 gfortran_4:12.2.0-1+rpi1 gfortran-12_12.2.0-9+rpi1 gnupg_2.2.39-1 gnupg-l10n_2.2.39-1 gnupg-utils_2.2.39-1 gpg_2.2.39-1 gpg-agent_2.2.39-1 gpg-wks-client_2.2.39-1 gpg-wks-server_2.2.39-1 gpgconf_2.2.39-1 gpgsm_2.2.39-1 gpgv_2.2.39-1 grep_3.7-1 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 icu-devtools_72.1-3 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.6 iputils-ping_3:20211215-1 krb5-locales_1.20-1 libacl1_2.3.1-1 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.5.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-9+rpi1 libassuan0_2.5.5-4 libatomic1_12.2.0-9+rpi1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.39-6+rpi1 libblas-dev_3.10.1-2 libblas3_3.10.1-2 libblkid1_2.38.1-4 libboost-dev_1.74.0.3+b4 libboost-iostreams1.74.0_1.74.0-17+b1 libboost1.74-dev_1.74.0-17+b1 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libsqlite3-0_3.39.4-1 libss2_1.46.6~rc1-1 libssh2-1_1.10.0-3+b1 libssl1.1_1.1.1o-1 libssl3_3.0.7-1 libstdc++-12-dev_12.2.0-9+rpi1 libstdc++6_12.2.0-9+rpi1 libsub-exporter-perl_0.988-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.928-3 libsub-name-perl_0.26-2+b1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd0_251.5-1+rpi1 libtasn1-6_4.19.0-2 libtcl8.6_8.6.13+dfsg-1 libthai-data_0.1.29-1 libthai0_0.1.29-1 libtiff5_4.4.0-6 libtimedate-perl_2.3300-2 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtk8.6_8.6.13-1 libtool_2.4.7-5 libtry-tiny-perl_0.31-2 libubsan1_12.2.0-9+rpi1 libuchardet0_0.0.7-1 libudev1_251.5-1+rpi1 libunistring2_1.0-2 liburi-perl_5.17-1 libuuid1_2.38.1-4 libvariable-magic-perl_0.63-1+b1 libwebp7_1.2.2-2+b1 libwww-curl-perl_4.17-8+b1 libwww-curl-simple-perl_0.100191-3 libx11-6_2:1.8.1-2 libx11-data_2:1.8.1-2 libxapian30_1.4.21-1 libxau6_1:1.0.9-1 libxcb-render0_1.15-1 libxcb-shm0_1.15-1 libxcb1_1.15-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.4-1 libxft2_2.3.6-1 libxml2_2.9.14+dfsg-1.1 libxmuu1_2:1.1.3-3 libxrender1_1:0.9.10-1.1 libxss1_1:1.2.3-1 libxt6_1:1.2.1-1 libxxhash0_0.8.1-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1+rpi1 login_1:4.12.3+dfsg1-1 logsave_1.46.6~rc1-1 lsb-base_11.4+rpi1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 nano_6.4-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 netbase_6.3 openssl_3.0.7-1 passwd_1:4.12.3+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pinentry-curses_1.2.0-2 pkg-config_1.8.0-11 pkgconf_1.8.0-11 pkgconf-bin_1.8.0-11 po-debconf_1.0.21+nmu1 r-base-core_4.2.2.20221110-1 r-base-dev_4.2.2.20221110-1 r-bioc-annotate_1.76.0+dfsg-1 r-bioc-annotationdbi_1.60.0-1 r-bioc-biobase_2.58.0-2 r-bioc-biocgenerics_0.44.0-2 r-bioc-biocio_1.8.0+dfsg-1 r-bioc-biocparallel_1.32.4-1 r-bioc-biostrings_2.66.0-1 r-bioc-bsgenome_1.66.1-1 r-bioc-cner_1.34.0+dfsg-1 r-bioc-delayedarray_0.24.0+dfsg-1 r-bioc-dirichletmultinomial_1.40.0-1 r-bioc-genomeinfodb_1.34.3-1 r-bioc-genomeinfodbdata_1.2.9-1 r-bioc-genomicalignments_1.34.0-1 r-bioc-genomicranges_1.50.1+dfsg-1 r-bioc-go.db_3.16.0-1 r-bioc-iranges_2.32.0-1 r-bioc-keggrest_1.38.0+dfsg-1 r-bioc-matrixgenerics_1.10.0-1 r-bioc-rhtslib_2.0.0+dfsg-1 r-bioc-rsamtools_2.14.0-1 r-bioc-rtracklayer_1.58.0-1 r-bioc-s4vectors_0.36.0-1 r-bioc-seqlogo_1.64.0+dfsg-1 r-bioc-summarizedexperiment_1.28.0+dfsg-1 r-bioc-xvector_0.38.0-1 r-bioc-zlibbioc_1.44.0+dfsg-1 r-cran-askpass_1.1-2 r-cran-bh_1.74.0-2 r-cran-bit_4.0.5-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-blob_1.2.3-1 r-cran-cachem_1.0.6-1 r-cran-catools_1.18.2-1 r-cran-cli_3.4.1-1 r-cran-clipr_0.8.0-1 r-cran-codetools_0.2-18-1 r-cran-colorspace_2.0-3+dfsg-1 r-cran-cpp11_0.4.3-1 r-cran-crayon_1.5.2-1 r-cran-curl_4.3.3+dfsg-1 r-cran-dbi_1.1.3-1 r-cran-digest_0.6.30-2 r-cran-ellipsis_0.3.2-2 r-cran-fansi_1.0.3-1 r-cran-farver_2.1.1-1 r-cran-fastmap_1.1.0-1 r-cran-formatr_1.12-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-ggplot2_3.3.6+dfsg-1 r-cran-glue_1.6.2-1 r-cran-gtable_0.3.1+dfsg-1 r-cran-gtools_3.9.4-1 r-cran-hms_1.1.2-1 r-cran-httr_1.4.4+dfsg-1 r-cran-isoband_0.2.6-1 r-cran-jsonlite_1.8.3+dfsg-1 r-cran-labeling_0.4.2-1 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.20-45-3 r-cran-lifecycle_1.0.3+dfsg-1 r-cran-littler_0.3.17-1 r-cran-magrittr_2.0.3-1 r-cran-mass_7.3-58.1-1 r-cran-matrix_1.5-1-1 r-cran-matrixstats_0.63.0-1 r-cran-memoise_2.0.1-1 r-cran-mgcv_1.8-41-1 r-cran-mime_0.12-1 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.160-1 r-cran-openssl_2.0.4+dfsg-1 r-cran-pillar_1.8.1+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.2-2 r-cran-plogr_0.2.0-3 r-cran-plyr_1.8.8-1 r-cran-png_0.1-7-4 r-cran-powerlaw_0.70.6-2 r-cran-pracma_2.4.2-1 r-cran-prettyunits_1.1.1-2 r-cran-progress_1.2.2-2 r-cran-r.methodss3_1.8.2-1 r-cran-r.oo_1.25.0-1 r-cran-r.utils_2.12.2-1 r-cran-r6_2.5.1-1 r-cran-rcolorbrewer_1.1-3-1 r-cran-rcpp_1.0.9-1 r-cran-rcurl_1.98-1.9+dfsg-1 r-cran-readr_2.1.3-1 r-cran-reshape2_1.4.4-2 r-cran-restfulr_0.0.15-1 r-cran-rjson_0.2.21-1 r-cran-rlang_1.0.6-1 r-cran-rsqlite_2.2.19-1 r-cran-scales_1.2.1-1 r-cran-snow_1:0.4.4-2 r-cran-stringi_1.7.8-1+b1 r-cran-stringr_1.4.1-1 r-cran-sys_3.4.1-1 r-cran-tfmpvalue_0.0.9-1 r-cran-tibble_3.1.8+dfsg-1 r-cran-tidyselect_1.2.0+dfsg-1 r-cran-tzdb_0.3.0-1 r-cran-utf8_1.2.2-1 r-cran-vctrs_0.5.1-1 r-cran-viridislite_0.4.1-1 r-cran-vroom_1.6.0-1 r-cran-withr_2.5.0-1 r-cran-xml_3.99-0.12-1 r-cran-xtable_1:1.8-4-2 r-cran-yaml_2.3.6-1 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-tfbstools-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.31 sysvinit-utils_3.05-6 tar_1.34+dfsg-1 tzdata_2022d-1 ucf_3.0043 unzip_6.0-27 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 x11-common_1:7.7+23 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.8-0.0 zip_3.0-12 zlib1g_1:1.2.11.dfsg-4.1 zlib1g-dev_1:1.2.11.dfsg-4.1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.pZUoWMr4/trustedkeys.kbx': General error
gpgv: Signature made Tue Nov 29 07:51:20 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-bioc-tfbstools_1.36.0+dfsg-2.dsc
dpkg-source: info: extracting r-bioc-tfbstools in /<<BUILDDIR>>/r-bioc-tfbstools-1.36.0+dfsg
dpkg-source: info: unpacking r-bioc-tfbstools_1.36.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-tfbstools_1.36.0+dfsg-2.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Fix_autopkgtest.patch

Check disc space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-c0731d1e-e33c-4b3d-a77e-4ea72c6ca160
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd

dpkg-buildpackage
-----------------

dpkg-buildpackage: info: source package r-bioc-tfbstools
dpkg-buildpackage: info: source version 1.36.0+dfsg-2
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-tfbstools/ -a -O--buildsystem=R
I: R Package: TFBSTools Version: 1.36.0
I: Building using R version 4.2.2.20221110-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Tue, 29 Nov 2022 08:47:36 +0100
	mkdir -p /<<BUILDDIR>>/r-bioc-tfbstools-1.36.0\+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library
	R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-tfbstools-1.36.0\+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 29 Nov 2022 08:47:36 +0100'"
* installing *source* package 'TFBSTools' ...
** using staged installation
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.36.0+dfsg/src'
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
gcc -I"/usr/share/R/include" -DNDEBUG      -fpic  -g -O2 -ffile-prefix-map=/build/r-base-S0e7F9/r-base-4.2.2.20221110=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2  -c R_init_TFBSTools.c -o R_init_TFBSTools.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o TFBSTools.so matrixAlignerDynamic.o R_init_TFBSTools.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.36.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.36.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.36.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-tfbstools-1.36.0+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library/00LOCK-r-bioc-tfbstools-1.36.0+dfsg/00new/TFBSTools/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'seqLogo' in package 'TFBSTools'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TFBSTools)
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 301.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 304.
W: Ignoring specified R dependency: R (>= 3.2.2)
I: Using r-bioc-biocstyle for Suggests:BiocStyle (>= 1.7.7)
W: Cannot find a debian package for Suggests:JASPAR2014 (>= 1.4.0)
I: Using r-cran-knitr for Suggests:knitr (>= 1.11)
I: Using r-cran-testthat for Suggests:testthat
W: Cannot find a debian package for Suggests:JASPAR2016 (>= 1.0.0)
W: Cannot find a debian package for Suggests:JASPAR2018 (>= 1.0.0)
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-bioc-biobase for Imports:Biobase (>= 2.28)
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.36.4)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.14.0)
I: Using r-bioc-biocparallel for Imports:BiocParallel (>= 1.2.21)
I: Using r-bioc-bsgenome for Imports:BSgenome (>= 1.36.3)
I: Using r-cran-catools for Imports:caTools (>= 1.17.1)
I: Using r-bioc-cner for Imports:CNEr (>= 1.4.0)
I: Using r-bioc-dirichletmultinomial for Imports:DirichletMultinomial (>= 1.10.0)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.6.1)
I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.20.6)
I: Using r-cran-gtools for Imports:gtools (>= 3.5.0)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.2.7)
I: Using r-cran-dbi for Imports:DBI (>= 0.6)
I: Using r-cran-rsqlite for Imports:RSQLite (>= 1.0.0)
I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.28.10)
I: Using r-bioc-seqlogo for Imports:seqLogo (>= 1.34.0)
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.25)
I: Using r-cran-tfmpvalue for Imports:TFMPvalue (>= 0.0.5)
I: Using r-cran-xml for Imports:XML (>= 3.98-1.3)
I: Using r-bioc-xvector for Imports:XVector (>= 0.8.0)
I: BioConductor API version: r-api-bioc-3.16
I: Use r-bioc-tfbstools as Debian binary package for variables substitution
   dh_installdocs -a -O--buildsystem=R
   dh_installchangelogs -a -O--buildsystem=R
   dh_installsystemduser -a -O--buildsystem=R
   dh_perl -a -O--buildsystem=R
   dh_link -a -O--buildsystem=R
   dh_strip_nondeterminism -a -O--buildsystem=R
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   dh_missing -a -O--buildsystem=R
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   dh_strip -a -O--buildsystem=R
   dh_makeshlibs -a -O--buildsystem=R
   dh_shlibdeps -a -O--buildsystem=R
   dh_installdeb -a -O--buildsystem=R
   dh_gencontrol -a -O--buildsystem=R
   dh_md5sums -a -O--buildsystem=R
   dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-tfbstools-dbgsym' in '../r-bioc-tfbstools-dbgsym_1.36.0+dfsg-2_armhf.deb'.
dpkg-deb: building package 'r-bioc-tfbstools' in '../r-bioc-tfbstools_1.36.0+dfsg-2_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../r-bioc-tfbstools_1.36.0+dfsg-2_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../r-bioc-tfbstools_1.36.0+dfsg-2_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-12-07T12:28:21Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Post Build Chroot                                                            |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-tfbstools_1.36.0+dfsg-2_armhf.changes:
---------------------------------------------

Format: 1.8
Date: Tue, 29 Nov 2022 08:47:36 +0100
Source: r-bioc-tfbstools
Binary: r-bioc-tfbstools r-bioc-tfbstools-dbgsym
Architecture: armhf
Version: 1.36.0+dfsg-2
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-bioc-tfbstools - GNU R Transcription Factor Binding Site (TFBS) Analysis
Changes:
 r-bioc-tfbstools (1.36.0+dfsg-2) unstable; urgency=medium
 .
   * Disable reprotest
   * Provide autopkgtest-pkg-r.conf to make sure testthat will be found
   * Drop debian/tests/control and rely on autopkgtest-pkg-r
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+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-tfbstools-dbgsym_1.36.0+dfsg-2_armhf.deb
-----------------------------------------------

 new Debian package, version 2.0.
 size 8652 bytes: control archive=544 bytes.
     411 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-tfbstools-dbgsym
 Source: r-bioc-tfbstools
 Version: 1.36.0+dfsg-2
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 21
 Depends: r-bioc-tfbstools (= 1.36.0+dfsg-2)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-tfbstools
 Build-Ids: d86f805349833c14435fbdd21d2fee96a3ba6365

drwxr-xr-x root/root         0 2022-11-29 07:47 ./
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/lib/
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/lib/debug/
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/lib/debug/.build-id/d8/
-rw-r--r-- root/root     10696 2022-11-29 07:47 ./usr/lib/debug/.build-id/d8/6f805349833c14435fbdd21d2fee96a3ba6365.debug
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/share/
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/share/doc/
lrwxrwxrwx root/root         0 2022-11-29 07:47 ./usr/share/doc/r-bioc-tfbstools-dbgsym -> r-bioc-tfbstools


r-bioc-tfbstools_1.36.0+dfsg-2_armhf.deb
----------------------------------------

 new Debian package, version 2.0.
 size 1026512 bytes: control archive=2324 bytes.
    1476 bytes,    17 lines      control              
    3805 bytes,    45 lines      md5sums              
 Package: r-bioc-tfbstools
 Version: 1.36.0+dfsg-2
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 1916
 Depends: r-base-core (>= 4.2.2.20221110-1), r-api-4.0, r-api-bioc-3.16, r-bioc-biobase (>= 2.28), r-bioc-biostrings (>= 2.36.4), r-bioc-biocgenerics (>= 0.14.0), r-bioc-biocparallel (>= 1.2.21), r-bioc-bsgenome (>= 1.36.3), r-cran-catools (>= 1.17.1), r-bioc-cner (>= 1.4.0), r-bioc-dirichletmultinomial (>= 1.10.0), r-bioc-genomeinfodb (>= 1.6.1), r-bioc-genomicranges (>= 1.20.6), r-cran-gtools (>= 3.5.0), r-bioc-iranges (>= 2.2.7), r-cran-dbi (>= 0.6), r-cran-rsqlite (>= 1.0.0), r-bioc-rtracklayer (>= 1.28.10), r-bioc-seqlogo (>= 1.34.0), r-bioc-s4vectors (>= 0.9.25), r-cran-tfmpvalue (>= 0.0.5), r-cran-xml (>= 3.98-1.3), r-bioc-xvector (>= 0.8.0), libc6 (>= 2.4)
 Suggests: r-bioc-biocstyle (>= 1.7.7), r-cran-knitr (>= 1.11), r-cran-testthat, r-cran-rmarkdown
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/TFBSTools/
 Description: GNU R Transcription Factor Binding Site (TFBS) Analysis
  TFBSTools is a package for the analysis and manipulation of
  transcription factor binding sites. It includes matrices conversion
  between Position Frequency Matirx (PFM), Position Weight Matirx (PWM)
  and Information Content Matrix (ICM). It can also scan putative TFBS
  from sequence/alignment, query JASPAR database and provides a wrapper of
  de novo motif discovery software.

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-rw-r--r-- root/root      1669 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/NEWS
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-rw-r--r-- root/root      1058 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/R/TFBSTools
-rw-r--r-- root/root   1378882 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/R/TFBSTools.rdb
-rw-r--r-- root/root      6659 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/R/TFBSTools.rdx
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/TFBSToolsBuild/
-rw-r--r-- root/root      3772 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/TFBSToolsBuild/build.r
-rw-r--r-- root/root      1035 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/TFBSToolsBuild/build2.R
-rw-r--r-- root/root      1605 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/TFBSToolsBuild/timing.R
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/data/
-rw-r--r-- root/root      2173 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/data/Rdata.rdb
-rw-r--r-- root/root       116 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/data/Rdata.rds
-rw-r--r-- root/root       194 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/data/Rdata.rdx
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/doc/
-rw-r--r-- root/root      8628 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/doc/TFBSTools.R
-rw-r--r-- root/root     20774 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/doc/TFBSTools.Rmd
-rw-r--r-- root/root      1467 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/doc/index.html
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/extdata/
-rw-r--r-- root/root       159 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/extdata/MA0001.1.pfm
-rw-r--r-- root/root      2106 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/extdata/crp0.s
-rw-r--r-- root/root    131653 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/extdata/hg19.danRer7.net.axt
-rw-r--r-- root/root     33868 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/extdata/meme.output
-rw-r--r-- root/root       517 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/extdata/pfm_all_example.txt
-rw-r--r-- root/root     32422 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/extdata/tffm_detailed.xml
-rw-r--r-- root/root      6731 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/extdata/tffm_first_order.xml
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/help/
-rw-r--r-- root/root     12173 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/help/AnIndex
-rw-r--r-- root/root    110933 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/help/TFBSTools.rdb
-rw-r--r-- root/root      1072 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/help/TFBSTools.rdx
-rw-r--r-- root/root      2121 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/help/aliases.rds
-rw-r--r-- root/root       543 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/help/paths.rds
drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/html/
-rw-r--r-- root/root     24426 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/html/00Index.html
-rw-r--r-- root/root      1735 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/html/R.css
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drwxr-xr-x root/root         0 2022-11-29 07:47 ./usr/lib/R/site-library/TFBSTools/obsolete/
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-rw-r--r-- root/root       949 2022-11-29 07:47 ./usr/share/doc/r-bioc-tfbstools/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build-Space: 3976
Build-Time: 622
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 2368
Job: r-bioc-tfbstools_1.36.0+dfsg-2
Machine Architecture: armhf
Package: r-bioc-tfbstools
Package-Time: 3054
Source-Version: 1.36.0+dfsg-2
Space: 3976
Status: successful
Version: 1.36.0+dfsg-2
--------------------------------------------------------------------------------
Finished at 2022-12-07T12:28:21Z
Build needed 00:50:54, 3976k disc space
Raspbian Package Auto-Building

Build log for r-bioc-tfbstools (1.36.0+dfsg-2) on armhf
