r-bioc-tfbstools →
1.34.0+dfsg-1 →
armhf → 2022-05-25 23:24:27
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-02
+==============================================================================+
| r-bioc-tfbstools 1.34.0+dfsg-1 (armhf) Wed, 25 May 2022 22:35:45 +0000 |
+==============================================================================+
Package: r-bioc-tfbstools
Version: 1.34.0+dfsg-1
Source Version: 1.34.0+dfsg-1
Distribution: bookworm-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/bookworm-staging-armhf-sbuild-6ce40ce0-bb31-46d6-a6cc-d7f39c16ec16' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.4.1/private bookworm-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private bookworm-staging/main Sources [13.0 MB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf Packages [13.9 MB]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
W: http://172.17.4.1/private/dists/bookworm-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-tfbstools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-tfbstools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 125 kB of source archives.
Get:1 http://172.17.4.1/private bookworm-staging/main r-bioc-tfbstools 1.34.0+dfsg-1 (dsc) [2522 B]
Get:2 http://172.17.4.1/private bookworm-staging/main r-bioc-tfbstools 1.34.0+dfsg-1 (tar) [118 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main r-bioc-tfbstools 1.34.0+dfsg-1 (diff) [3728 B]
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Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-tfbstools-nG0MMO/r-bioc-tfbstools-1.34.0+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-tfbstools-nG0MMO' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-Lez53h/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-Lez53h/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-Lez53h/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ Packages [432 B]
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Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
netbase sensible-utils
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 55 not upgraded.
Need to get 852 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [852 B]
debconf: delaying package configuration, since apt-utils is not installed
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Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 12616 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-bsgenome, r-cran-catools, r-bioc-cner, r-bioc-dirichletmultinomial, r-bioc-genomeinfodb, r-bioc-genomicranges, r-cran-gtools, r-bioc-iranges, r-cran-dbi, r-cran-rsqlite, r-bioc-rtracklayer, r-bioc-seqlogo, r-bioc-s4vectors, r-cran-tfmpvalue, r-cran-xml, r-bioc-xvector
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biobase, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-biocparallel, r-bioc-bsgenome, r-cran-catools, r-bioc-cner, r-bioc-dirichletmultinomial, r-bioc-genomeinfodb, r-bioc-genomicranges, r-cran-gtools, r-bioc-iranges, r-cran-dbi, r-cran-rsqlite, r-bioc-rtracklayer, r-bioc-seqlogo, r-bioc-s4vectors, r-cran-tfmpvalue, r-cran-xml, r-bioc-xvector
dpkg-deb: building package 'sbuild-build-depends-r-bioc-tfbstools-dummy' in '/<<BUILDDIR>>/resolver-Lez53h/apt_archive/sbuild-build-depends-r-bioc-tfbstools-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-tfbstools-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ Sources [644 B]
Get:5 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ Packages [728 B]
Fetched 2705 B in 1s (3387 B/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-tfbstools build dependencies (apt-based resolver)
----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following package was automatically installed and is no longer required:
netbase
Use 'apt autoremove' to remove it.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
cpp-11 dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz
file fontconfig fontconfig-config fonts-dejavu-core g++-11 gcc-11
gcc-11-base gcc-12-base gettext gettext-base gfortran gfortran-11 groff-base
icu-devtools intltool-debian libalgorithm-c3-perl libarchive-zip-perl
libasan6 libatomic1 libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libcc1-0 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0 libgcc-11-dev
libgcc-s1 libgfortran-11-dev libgfortran5 libglib2.0-0 libgomp1
libgraphite2-3 libgsl27 libgslcblas0 libharfbuzz0b libhttp-date-perl
libhttp-message-perl libice6 libicu-dev libicu71 libio-html-perl libjbig0
libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3
libldap-2.5-0 liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1
libmd0 libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libncursesw6 libnghttp2-14 libpackage-deprecationmanager-perl
libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
libparams-classify-perl libparams-util-perl libpcre16-3 libpcre2-16-0
libpcre2-32-0 libpcre2-8-0 libpcre2-dev libpcre2-posix3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpng16-16
libpsl5 libreadline-dev librtmp1 libscalar-list-utils-perl libsigsegv2
libsm6 libssh2-1 libstdc++-11-dev libstdc++6 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtinfo6 libtk8.6 libtool
libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libvariable-magic-perl
libwebp7 libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data
libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db openssl pkg-config
po-debconf r-base-core r-base-dev r-bioc-annotate r-bioc-annotationdbi
r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel
r-bioc-biostrings r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray
r-bioc-dirichletmultinomial r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicranges r-bioc-go.db r-bioc-iranges
r-bioc-keggrest r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools
r-bioc-rtracklayer r-bioc-s4vectors r-bioc-seqlogo
r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-askpass
r-cran-bh r-cran-bit r-cran-bit64 r-cran-bitops r-cran-blob r-cran-cachem
r-cran-catools r-cran-cli r-cran-clipr r-cran-codetools r-cran-colorspace
r-cran-cpp11 r-cran-crayon r-cran-curl r-cran-dbi r-cran-digest
r-cran-ellipsis r-cran-fansi r-cran-farver r-cran-fastmap r-cran-formatr
r-cran-futile.logger r-cran-futile.options r-cran-ggplot2 r-cran-glue
r-cran-gtable r-cran-gtools r-cran-hms r-cran-httr r-cran-isoband
r-cran-jsonlite r-cran-labeling r-cran-lambda.r r-cran-lattice
r-cran-lifecycle r-cran-littler r-cran-magrittr r-cran-mass r-cran-matrix
r-cran-matrixstats r-cran-memoise r-cran-mgcv r-cran-mime r-cran-munsell
r-cran-nlme r-cran-openssl r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten
r-cran-plogr r-cran-plyr r-cran-png r-cran-powerlaw r-cran-pracma
r-cran-prettyunits r-cran-progress r-cran-purrr r-cran-r.methodss3
r-cran-r.oo r-cran-r.utils r-cran-r6 r-cran-rcolorbrewer r-cran-rcpp
r-cran-rcurl r-cran-readr r-cran-reshape2 r-cran-restfulr r-cran-rjson
r-cran-rlang r-cran-rsqlite r-cran-scales r-cran-snow r-cran-stringi
r-cran-stringr r-cran-sys r-cran-tfmpvalue r-cran-tibble r-cran-tidyselect
r-cran-tzdb r-cran-utf8 r-cran-vctrs r-cran-viridislite r-cran-vroom
r-cran-withr r-cran-xml r-cran-xtable r-cran-yaml sgml-base ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc gcc-11-locales debtags dh-make
postgresql-client-common gcc-11-doc gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-11-doc libcoarrays-dev groff
liblapack-doc libboost-doc libboost1.74-doc libboost-atomic1.74-dev
libboost-chrono1.74-dev libboost-container1.74-dev libboost-context1.74-dev
libboost-contract1.74-dev libboost-coroutine1.74-dev
libboost-date-time1.74-dev libboost-exception1.74-dev libboost-fiber1.74-dev
libboost-filesystem1.74-dev libboost-graph1.74-dev
libboost-graph-parallel1.74-dev libboost-iostreams1.74-dev
libboost-locale1.74-dev libboost-log1.74-dev libboost-math1.74-dev
libboost-mpi1.74-dev libboost-mpi-python1.74-dev libboost-numpy1.74-dev
libboost-program-options1.74-dev libboost-python1.74-dev
libboost-random1.74-dev libboost-regex1.74-dev
libboost-serialization1.74-dev libboost-stacktrace1.74-dev
libboost-system1.74-dev libboost-test1.74-dev libboost-thread1.74-dev
libboost-timer1.74-dev libboost-type-erasure1.74-dev libboost-wave1.74-dev
libboost1.74-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.74-dev
gsl-ref-psdoc | gsl-doc-pdf | gsl-doc-info | gsl-ref-html icu-doc
liblzma-doc ncurses-doc libscalar-number-perl readline-doc libstdc++-11-doc
tcl8.6 tk8.6 libtool-doc gcj-jdk libbusiness-isbn-perl libwww-perl
libcurl4-gnutls-dev m4-doc apparmor less www-browser libmail-box-perl
elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base
texlive-latex-base texlive-plain-generic texlive-fonts-recommended
texlive-fonts-extra texlive-extra-utils texlive-latex-recommended
texlive-latex-extra texinfo r-bioc-genefilter r-bioc-org.hs.eg.db
r-cran-runit r-bioc-graph r-bioc-biocstyle r-cran-knitr r-bioc-all
r-bioc-affy r-bioc-deseq2 r-cran-testthat r-cran-rmarkdown r-cran-foreach
r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread r-cran-data.table
r-bioc-genomicfeatures r-cran-biocmanager r-bioc-gviz r-bioc-hdf5array
r-cran-lobstr r-bioc-delayedmatrixstats r-bioc-edger r-bioc-annotationhub
r-bioc-dexseq r-cran-markdown r-bioc-sparsematrixstats r-bioc-limma
r-bioc-rhdf5 r-cran-roxygen2 r-cran-covr r-cran-rpart r-cran-callr
r-cran-htmltools r-cran-htmlwidgets r-cran-processx r-cran-ps
r-cran-rstudioapi r-cran-shiny r-cran-whoami r-cran-kernsmooth
r-cran-kernlab r-cran-mvtnorm r-cran-vcd r-cran-shinyjs r-cran-dplyr
r-cran-jpeg r-cran-viridis r-cran-bench r-cran-desc r-cran-rmysql
r-cran-unitizer r-cran-forcats r-cran-waldo r-cran-lubridate r-cran-httpuv
r-cran-xml2 r-cran-magick r-cran-sf r-cran-r.rsp r-cran-tidyverse
r-cran-getopt r-cran-base64enc r-cran-r.devices r-cran-formattable
r-cran-nanotime r-cran-palmerpenguins r-cran-survival r-cran-units
r-cran-vdiffr r-cran-doparallel r-cran-iterators r-cran-itertools
r-cran-quadprog r-cran-inline r-cran-fs r-cran-usethis r-cran-gert r-cran-gh
r-cran-rvest r-cran-dichromat r-cran-rmpi r-cran-rlecuyer r-cran-brio
r-cran-evaluate r-cran-pkgbuild r-cran-pkgload r-cran-tidyr r-cran-zeallot
r-cran-plm r-cran-zoo sgml-base-doc
Recommended packages:
devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
libglib2.0-data shared-mime-info xdg-user-dirs libclone-perl libldap-common
libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs
r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-biovizbase
r-cran-testthat r-cran-mockery r-cran-decor r-cran-knitr r-cran-brio
r-cran-httpuv r-cran-webutils r-cran-testit r-cran-survival r-cran-covr
r-cran-ragg r-cran-dplyr r-cran-hexbin r-cran-hmisc r-cran-interp
r-cran-mapproj r-cran-maps r-cran-maptools r-cran-multcomp r-cran-quantreg
r-cran-rmarkdown r-cran-rpart r-cran-sf r-cran-svglite r-cran-vdiffr
r-cran-xml2 r-cran-sp r-cran-sodium r-cran-lubridate r-cran-domc
r-cran-abind r-cran-dbitest r-cran-htmltools r-cran-htmlwidgets
r-cran-data.table r-cran-mockr r-cran-generics r-cran-waldo
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-11 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
libblas-dev libblas3 libboost-dev libboost1.74-dev libbrotli1 libbsd0
libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
libclass-load-xs-perl libcurl3-gnutls libcurl4 libdata-optlist-perl
libdatrie1 libdebhelper-perl libdeflate0 libdevel-callchecker-perl
libdevel-globaldestruction-perl libdevel-overloadinfo-perl
libdevel-stacktrace-perl libdist-checkconflicts-perl
libdynaloader-functions-perl libelf1 libencode-locale-perl
libeval-closure-perl libexpat1 libfile-stripnondeterminism-perl
libfile-which-perl libfontconfig1 libfreetype6 libfribidi0
libgfortran-11-dev libgfortran5 libglib2.0-0 libgraphite2-3 libgsl27
libgslcblas0 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
libicu-dev libicu71 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
libjpeg62-turbo-dev liblapack-dev liblapack3 libldap-2.5-0
liblwp-mediatypes-perl liblzma-dev libmagic-mgc libmagic1 libmd0
libmodule-implementation-perl libmodule-runtime-conflicts-perl
libmodule-runtime-perl libmoose-perl libmro-compat-perl
libnamespace-clean-perl libncurses-dev libncurses5-dev libncurses6
libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
libparams-util-perl libpcre16-3 libpcre2-16-0 libpcre2-32-0 libpcre2-dev
libpcre2-posix3 libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1
libpixman-1-0 libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1
libscalar-list-utils-perl libsigsegv2 libsm6 libssh2-1 libsub-exporter-perl
libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
libthai0 libtiff5 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl pkg-config po-debconf r-base-core
r-base-dev r-bioc-annotate r-bioc-annotationdbi r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocio r-bioc-biocparallel r-bioc-biostrings
r-bioc-bsgenome r-bioc-cner r-bioc-delayedarray r-bioc-dirichletmultinomial
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
r-bioc-genomicranges r-bioc-go.db r-bioc-iranges r-bioc-keggrest
r-bioc-matrixgenerics r-bioc-rhtslib r-bioc-rsamtools r-bioc-rtracklayer
r-bioc-s4vectors r-bioc-seqlogo r-bioc-summarizedexperiment r-bioc-xvector
r-bioc-zlibbioc r-cran-askpass r-cran-bh r-cran-bit r-cran-bit64
r-cran-bitops r-cran-blob r-cran-cachem r-cran-catools r-cran-cli
r-cran-clipr r-cran-codetools r-cran-colorspace r-cran-cpp11 r-cran-crayon
r-cran-curl r-cran-dbi r-cran-digest r-cran-ellipsis r-cran-fansi
r-cran-farver r-cran-fastmap r-cran-formatr r-cran-futile.logger
r-cran-futile.options r-cran-ggplot2 r-cran-glue r-cran-gtable r-cran-gtools
r-cran-hms r-cran-httr r-cran-isoband r-cran-jsonlite r-cran-labeling
r-cran-lambda.r r-cran-lattice r-cran-lifecycle r-cran-littler
r-cran-magrittr r-cran-mass r-cran-matrix r-cran-matrixstats r-cran-memoise
r-cran-mgcv r-cran-mime r-cran-munsell r-cran-nlme r-cran-openssl
r-cran-pillar r-cran-pkgconfig r-cran-pkgkitten r-cran-plogr r-cran-plyr
r-cran-png r-cran-powerlaw r-cran-pracma r-cran-prettyunits r-cran-progress
r-cran-purrr r-cran-r.methodss3 r-cran-r.oo r-cran-r.utils r-cran-r6
r-cran-rcolorbrewer r-cran-rcpp r-cran-rcurl r-cran-readr r-cran-reshape2
r-cran-restfulr r-cran-rjson r-cran-rlang r-cran-rsqlite r-cran-scales
r-cran-snow r-cran-stringi r-cran-stringr r-cran-sys r-cran-tfmpvalue
r-cran-tibble r-cran-tidyselect r-cran-tzdb r-cran-utf8 r-cran-vctrs
r-cran-viridislite r-cran-vroom r-cran-withr r-cran-xml r-cran-xtable
r-cran-yaml sbuild-build-depends-r-bioc-tfbstools-dummy sgml-base ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp-11 g++-11 gcc-11 gcc-11-base gcc-12-base libasan6 libatomic1 libcc1-0
libgcc-11-dev libgcc-s1 libgomp1 libncursesw6 libpcre2-8-0 libstdc++-11-dev
libstdc++6 libtinfo6 libubsan1
17 upgraded, 289 newly installed, 0 to remove and 38 not upgraded.
Need to get 281 MB of archives.
After this operation, 699 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-Lez53h/apt_archive ./ sbuild-build-depends-r-bioc-tfbstools-dummy 0.invalid.0 [1008 B]
Get:2 http://172.17.4.1/private bookworm-staging/main armhf sgml-base all 1.30 [15.1 kB]
Get:3 http://172.17.4.1/private bookworm-staging/main armhf libatomic1 armhf 12.1.0-2+rpi1 [8196 B]
Get:4 http://172.17.4.1/private bookworm-staging/main armhf libubsan1 armhf 12.1.0-2+rpi1 [860 kB]
Get:5 http://172.17.4.1/private bookworm-staging/main armhf gcc-12-base armhf 12.1.0-2+rpi1 [207 kB]
Get:6 http://172.17.4.1/private bookworm-staging/main armhf libstdc++6 armhf 12.1.0-2+rpi1 [504 kB]
Get:7 http://172.17.4.1/private bookworm-staging/main armhf libgomp1 armhf 12.1.0-2+rpi1 [95.4 kB]
Get:8 http://172.17.4.1/private bookworm-staging/main armhf libcc1-0 armhf 12.1.0-2+rpi1 [32.1 kB]
Get:9 http://172.17.4.1/private bookworm-staging/main armhf libgcc-s1 armhf 12.1.0-2+rpi1 [36.1 kB]
Get:10 http://172.17.4.1/private bookworm-staging/main armhf libtinfo6 armhf 6.3+20220423-2 [337 kB]
Get:11 http://172.17.4.1/private bookworm-staging/main armhf libncursesw6 armhf 6.3+20220423-2 [104 kB]
Get:12 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-8-0 armhf 10.40-1 [221 kB]
Get:13 http://172.17.4.1/private bookworm-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:14 http://172.17.4.1/private bookworm-staging/main armhf groff-base armhf 1.22.4-8 [793 kB]
Get:15 http://172.17.4.1/private bookworm-staging/main armhf bsdextrautils armhf 2.38-4 [137 kB]
Get:16 http://172.17.4.1/private bookworm-staging/main armhf libpipeline1 armhf 1.5.6-1 [33.7 kB]
Get:17 http://172.17.4.1/private bookworm-staging/main armhf man-db armhf 2.10.2-1 [1362 kB]
Get:18 http://172.17.4.1/private bookworm-staging/main armhf openssl armhf 1.1.1o-1 [817 kB]
Get:19 http://172.17.4.1/private bookworm-staging/main armhf ca-certificates all 20211016 [156 kB]
Get:20 http://172.17.4.1/private bookworm-staging/main armhf libmagic-mgc armhf 1:5.41-4 [295 kB]
Get:21 http://172.17.4.1/private bookworm-staging/main armhf libmagic1 armhf 1:5.41-4 [120 kB]
Get:22 http://172.17.4.1/private bookworm-staging/main armhf file armhf 1:5.41-4 [65.8 kB]
Get:23 http://172.17.4.1/private bookworm-staging/main armhf gettext-base armhf 0.21-6 [171 kB]
Get:24 http://172.17.4.1/private bookworm-staging/main armhf ucf all 3.0043 [74.0 kB]
Get:25 http://172.17.4.1/private bookworm-staging/main armhf libsigsegv2 armhf 2.14-1 [36.6 kB]
Get:26 http://172.17.4.1/private bookworm-staging/main armhf m4 armhf 1.4.18-5 [186 kB]
Get:27 http://172.17.4.1/private bookworm-staging/main armhf autoconf all 2.71-2 [343 kB]
Get:28 http://172.17.4.1/private bookworm-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:29 http://172.17.4.1/private bookworm-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:30 http://172.17.4.1/private bookworm-staging/main armhf autopoint all 0.21-6 [510 kB]
Get:31 http://172.17.4.1/private bookworm-staging/main armhf libasan6 armhf 11.3.0-1+rpi1 [1946 kB]
Get:32 http://172.17.4.1/private bookworm-staging/main armhf g++-11 armhf 11.3.0-1+rpi1 [7923 kB]
Get:33 http://172.17.4.1/private bookworm-staging/main armhf gcc-11 armhf 11.3.0-1+rpi1 [14.0 MB]
Get:34 http://172.17.4.1/private bookworm-staging/main armhf libstdc++-11-dev armhf 11.3.0-1+rpi1 [1969 kB]
Get:35 http://172.17.4.1/private bookworm-staging/main armhf libgcc-11-dev armhf 11.3.0-1+rpi1 [698 kB]
Get:36 http://172.17.4.1/private bookworm-staging/main armhf cpp-11 armhf 11.3.0-1+rpi1 [7080 kB]
Get:37 http://172.17.4.1/private bookworm-staging/main armhf gcc-11-base armhf 11.3.0-1+rpi1 [209 kB]
Get:38 http://172.17.4.1/private bookworm-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:39 http://172.17.4.1/private bookworm-staging/main armhf libdebhelper-perl all 13.7.1 [195 kB]
Get:40 http://172.17.4.1/private bookworm-staging/main armhf libtool all 2.4.7-4 [526 kB]
Get:41 http://172.17.4.1/private bookworm-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:42 http://172.17.4.1/private bookworm-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:43 http://172.17.4.1/private bookworm-staging/main armhf libsub-override-perl all 0.09-2 [10.2 kB]
Get:44 http://172.17.4.1/private bookworm-staging/main armhf libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB]
Get:45 http://172.17.4.1/private bookworm-staging/main armhf dh-strip-nondeterminism all 1.13.0-1 [15.8 kB]
Get:46 http://172.17.4.1/private bookworm-staging/main armhf libelf1 armhf 0.187-1 [175 kB]
Get:47 http://172.17.4.1/private bookworm-staging/main armhf dwz armhf 0.14-1 [83.0 kB]
Get:48 http://172.17.4.1/private bookworm-staging/main armhf libicu71 armhf 71.1-3 [8855 kB]
Get:49 http://172.17.4.1/private bookworm-staging/main armhf libxml2 armhf 2.9.14+dfsg-1 [591 kB]
Get:50 http://172.17.4.1/private bookworm-staging/main armhf gettext armhf 0.21-6 [1214 kB]
Get:51 http://172.17.4.1/private bookworm-staging/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:52 http://172.17.4.1/private bookworm-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:53 http://172.17.4.1/private bookworm-staging/main armhf debhelper all 13.7.1 [1071 kB]
Get:54 http://172.17.4.1/private bookworm-staging/main armhf zip armhf 3.0-12 [209 kB]
Get:55 http://172.17.4.1/private bookworm-staging/main armhf unzip armhf 6.0-26 [151 kB]
Get:56 http://172.17.4.1/private bookworm-staging/main armhf libpaper1 armhf 1.1.28 [20.5 kB]
Get:57 http://172.17.4.1/private bookworm-staging/main armhf libpaper-utils armhf 1.1.28 [17.7 kB]
Get:58 http://172.17.4.1/private bookworm-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:59 http://172.17.4.1/private bookworm-staging/main armhf libblas3 armhf 3.10.1-2 [109 kB]
Get:60 http://172.17.4.1/private bookworm-staging/main armhf libexpat1 armhf 2.4.8-1 [84.1 kB]
Get:61 http://172.17.4.1/private bookworm-staging/main armhf libbrotli1 armhf 1.0.9-2+b2 [260 kB]
Get:62 http://172.17.4.1/private bookworm-staging/main armhf libpng16-16 armhf 1.6.37-5 [272 kB]
Get:63 http://172.17.4.1/private bookworm-staging/main armhf libfreetype6 armhf 2.12.1+dfsg-2 [352 kB]
Get:64 http://172.17.4.1/private bookworm-staging/main armhf fonts-dejavu-core all 2.37-2 [1069 kB]
Get:65 http://172.17.4.1/private bookworm-staging/main armhf fontconfig-config all 2.13.1-4.4 [281 kB]
Get:66 http://172.17.4.1/private bookworm-staging/main armhf libfontconfig1 armhf 2.13.1-4.4 [331 kB]
Get:67 http://172.17.4.1/private bookworm-staging/main armhf libpixman-1-0 armhf 0.40.0-1 [463 kB]
Get:68 http://172.17.4.1/private bookworm-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:69 http://172.17.4.1/private bookworm-staging/main armhf libmd0 armhf 1.0.4-1 [28.9 kB]
Get:70 http://172.17.4.1/private bookworm-staging/main armhf libbsd0 armhf 0.11.6-1 [109 kB]
Get:71 http://172.17.4.1/private bookworm-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:72 http://172.17.4.1/private bookworm-staging/main armhf libxcb1 armhf 1.14-3 [136 kB]
Get:73 http://172.17.4.1/private bookworm-staging/main armhf libx11-data all 2:1.7.5-1 [308 kB]
Get:74 http://172.17.4.1/private bookworm-staging/main armhf libx11-6 armhf 2:1.7.5-1 [706 kB]
Get:75 http://172.17.4.1/private bookworm-staging/main armhf libxcb-render0 armhf 1.14-3 [110 kB]
Get:76 http://172.17.4.1/private bookworm-staging/main armhf libxcb-shm0 armhf 1.14-3 [101 kB]
Get:77 http://172.17.4.1/private bookworm-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:78 http://172.17.4.1/private bookworm-staging/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB]
Get:79 http://172.17.4.1/private bookworm-staging/main armhf libcairo2 armhf 1.16.0-5 [602 kB]
Get:80 http://172.17.4.1/private bookworm-staging/main armhf libldap-2.5-0 armhf 2.5.11+dfsg-1+rpi1 [198 kB]
Get:81 http://172.17.4.1/private bookworm-staging/main armhf libnghttp2-14 armhf 1.47.0-1 [65.0 kB]
Get:82 http://172.17.4.1/private bookworm-staging/main armhf libpsl5 armhf 0.21.0-1.2 [56.2 kB]
Get:83 http://172.17.4.1/private bookworm-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:84 http://172.17.4.1/private bookworm-staging/main armhf libssh2-1 armhf 1.10.0-3 [161 kB]
Get:85 http://172.17.4.1/private bookworm-staging/main armhf libcurl4 armhf 7.83.0-1 [316 kB]
Get:86 http://172.17.4.1/private bookworm-staging/main armhf libglib2.0-0 armhf 2.72.1-1 [1231 kB]
Get:87 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo armhf 1:2.1.2-1 [144 kB]
Get:88 http://172.17.4.1/private bookworm-staging/main armhf libgfortran5 armhf 12.1.0-2+rpi1 [238 kB]
Get:89 http://172.17.4.1/private bookworm-staging/main armhf liblapack3 armhf 3.10.1-2 [1587 kB]
Get:90 http://172.17.4.1/private bookworm-staging/main armhf fontconfig armhf 2.13.1-4.4 [416 kB]
Get:91 http://172.17.4.1/private bookworm-staging/main armhf libfribidi0 armhf 1.0.8-2.1 [63.7 kB]
Get:92 http://172.17.4.1/private bookworm-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:93 http://172.17.4.1/private bookworm-staging/main armhf libharfbuzz0b armhf 2.7.4-1+b1 [1420 kB]
Get:94 http://172.17.4.1/private bookworm-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:95 http://172.17.4.1/private bookworm-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:96 http://172.17.4.1/private bookworm-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:97 http://172.17.4.1/private bookworm-staging/main armhf libpango-1.0-0 armhf 1.50.7+ds-1 [214 kB]
Get:98 http://172.17.4.1/private bookworm-staging/main armhf libpangoft2-1.0-0 armhf 1.50.7+ds-1 [70.1 kB]
Get:99 http://172.17.4.1/private bookworm-staging/main armhf libpangocairo-1.0-0 armhf 1.50.7+ds-1 [60.1 kB]
Get:100 http://172.17.4.1/private bookworm-staging/main armhf libtcl8.6 armhf 8.6.12+dfsg-1 [906 kB]
Get:101 http://172.17.4.1/private bookworm-staging/main armhf libdeflate0 armhf 1.10-2 [55.4 kB]
Get:102 http://172.17.4.1/private bookworm-staging/main armhf libjbig0 armhf 2.1-3.1+b2 [27.6 kB]
Get:103 http://172.17.4.1/private bookworm-staging/main armhf libwebp7 armhf 1.2.2-2 [237 kB]
Get:104 http://172.17.4.1/private bookworm-staging/main armhf libtiff5 armhf 4.3.0-8 [273 kB]
Get:105 http://172.17.4.1/private bookworm-staging/main armhf libxft2 armhf 2.3.4-1 [50.2 kB]
Get:106 http://172.17.4.1/private bookworm-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:107 http://172.17.4.1/private bookworm-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:108 http://172.17.4.1/private bookworm-staging/main armhf libtk8.6 armhf 8.6.12-1 [680 kB]
Get:109 http://172.17.4.1/private bookworm-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:110 http://172.17.4.1/private bookworm-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:111 http://172.17.4.1/private bookworm-staging/main armhf libxt6 armhf 1:1.2.1-1 [159 kB]
Get:112 http://172.17.4.1/private bookworm-staging/main armhf r-base-core armhf 4.2.0-1 [27.7 MB]
Get:113 http://172.17.4.1/private bookworm-staging/main armhf libgfortran-11-dev armhf 11.3.0-1+rpi1 [280 kB]
Get:114 http://172.17.4.1/private bookworm-staging/main armhf gfortran-11 armhf 11.3.0-1+rpi1 [7580 kB]
Get:115 http://172.17.4.1/private bookworm-staging/main armhf gfortran armhf 4:11.2.0-2+rpi1 [1428 B]
Get:116 http://172.17.4.1/private bookworm-staging/main armhf libblas-dev armhf 3.10.1-2 [114 kB]
Get:117 http://172.17.4.1/private bookworm-staging/main armhf liblapack-dev armhf 3.10.1-2 [2847 kB]
Get:118 http://172.17.4.1/private bookworm-staging/main armhf libncurses6 armhf 6.3+20220423-2 [79.6 kB]
Get:119 http://172.17.4.1/private bookworm-staging/main armhf libncurses-dev armhf 6.3+20220423-2 [289 kB]
Get:120 http://172.17.4.1/private bookworm-staging/main armhf libncurses5-dev armhf 6.3+20220423-2 [940 B]
Get:121 http://172.17.4.1/private bookworm-staging/main armhf libreadline-dev armhf 8.1.2-1.2 [120 kB]
Get:122 http://172.17.4.1/private bookworm-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.2-1 [261 kB]
Get:123 http://172.17.4.1/private bookworm-staging/main armhf libjpeg-dev armhf 1:2.1.2-1 [74.7 kB]
Get:124 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-16-0 armhf 10.40-1 [208 kB]
Get:125 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-32-0 armhf 10.40-1 [199 kB]
Get:126 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-posix3 armhf 10.40-1 [53.4 kB]
Get:127 http://172.17.4.1/private bookworm-staging/main armhf libpcre2-dev armhf 10.40-1 [637 kB]
Get:128 http://172.17.4.1/private bookworm-staging/main armhf libpcre16-3 armhf 2:8.39-14 [239 kB]
Get:129 http://172.17.4.1/private bookworm-staging/main armhf libpcre32-3 armhf 2:8.39-14 [232 kB]
Get:130 http://172.17.4.1/private bookworm-staging/main armhf libpcrecpp0v5 armhf 2:8.39-14 [150 kB]
Get:131 http://172.17.4.1/private bookworm-staging/main armhf libpcre3-dev armhf 2:8.39-14 [569 kB]
Get:132 http://172.17.4.1/private bookworm-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-4 [183 kB]
Get:133 http://172.17.4.1/private bookworm-staging/main armhf libpng-dev armhf 1.6.37-5 [272 kB]
Get:134 http://172.17.4.1/private bookworm-staging/main armhf libbz2-dev armhf 1.0.8-5 [26.8 kB]
Get:135 http://172.17.4.1/private bookworm-staging/main armhf liblzma-dev armhf 5.2.5-2.1 [218 kB]
Get:136 http://172.17.4.1/private bookworm-staging/main armhf icu-devtools armhf 71.1-3 [177 kB]
Get:137 http://172.17.4.1/private bookworm-staging/main armhf libicu-dev armhf 71.1-3 [9799 kB]
Get:138 http://172.17.4.1/private bookworm-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:139 http://172.17.4.1/private bookworm-staging/main armhf xauth armhf 1:1.1.1-1 [36.9 kB]
Get:140 http://172.17.4.1/private bookworm-staging/main armhf pkg-config armhf 0.29.2-1 [61.5 kB]
Get:141 http://172.17.4.1/private bookworm-staging/main armhf r-base-dev all 4.2.0-1 [4488 B]
Get:142 http://172.17.4.1/private bookworm-staging/main armhf libfile-which-perl all 1.27-1 [17.3 kB]
Get:143 http://172.17.4.1/private bookworm-staging/main armhf libswitch-perl all 2.17-2.1 [20.0 kB]
Get:144 http://172.17.4.1/private bookworm-staging/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB]
Get:145 http://172.17.4.1/private bookworm-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:146 http://172.17.4.1/private bookworm-staging/main armhf libhttp-date-perl all 6.05-1 [10.4 kB]
Get:147 http://172.17.4.1/private bookworm-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:148 http://172.17.4.1/private bookworm-staging/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB]
Get:149 http://172.17.4.1/private bookworm-staging/main armhf liburi-perl all 5.10-1 [91.0 kB]
Get:150 http://172.17.4.1/private bookworm-staging/main armhf libhttp-message-perl all 6.36-1 [80.6 kB]
Get:151 http://172.17.4.1/private bookworm-staging/main armhf libparams-util-perl armhf 1.102-1+b2 [24.5 kB]
Get:152 http://172.17.4.1/private bookworm-staging/main armhf libsub-install-perl all 0.928-1.1 [10.8 kB]
Get:153 http://172.17.4.1/private bookworm-staging/main armhf libdata-optlist-perl all 0.112-1 [11.8 kB]
Get:154 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-op-check-perl armhf 0.22-1+b5 [10.9 kB]
Get:155 http://172.17.4.1/private bookworm-staging/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB]
Get:156 http://172.17.4.1/private bookworm-staging/main armhf libdevel-callchecker-perl armhf 0.008-1+b3 [15.7 kB]
Get:157 http://172.17.4.1/private bookworm-staging/main armhf libparams-classify-perl armhf 0.015-1+b4 [24.6 kB]
Get:158 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:159 http://172.17.4.1/private bookworm-staging/main armhf libtry-tiny-perl all 0.31-1 [24.2 kB]
Get:160 http://172.17.4.1/private bookworm-staging/main armhf libmodule-implementation-perl all 0.09-1.1 [12.4 kB]
Get:161 http://172.17.4.1/private bookworm-staging/main armhf libscalar-list-utils-perl armhf 1:1.62-1 [61.6 kB]
Get:162 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:163 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-perl all 0.25-1 [16.1 kB]
Get:164 http://172.17.4.1/private bookworm-staging/main armhf libclass-load-xs-perl armhf 0.10-1+b5 [14.2 kB]
Get:165 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:166 http://172.17.4.1/private bookworm-staging/main armhf libdevel-globaldestruction-perl all 0.14-1.1 [8312 B]
Get:167 http://172.17.4.1/private bookworm-staging/main armhf libalgorithm-c3-perl all 0.11-1 [11.7 kB]
Get:168 http://172.17.4.1/private bookworm-staging/main armhf libclass-c3-perl all 0.35-1 [22.9 kB]
Get:169 http://172.17.4.1/private bookworm-staging/main armhf libmro-compat-perl all 0.15-1 [12.6 kB]
Get:170 http://172.17.4.1/private bookworm-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:171 http://172.17.4.1/private bookworm-staging/main armhf libdevel-stacktrace-perl all 2.0400-1 [28.6 kB]
Get:172 http://172.17.4.1/private bookworm-staging/main armhf libsub-exporter-perl all 0.988-1 [51.9 kB]
Get:173 http://172.17.4.1/private bookworm-staging/main armhf libeval-closure-perl all 0.14-1 [11.5 kB]
Get:174 http://172.17.4.1/private bookworm-staging/main armhf libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB]
Get:175 http://172.17.4.1/private bookworm-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B]
Get:176 http://172.17.4.1/private bookworm-staging/main armhf libsub-name-perl armhf 0.26-1+b2 [13.2 kB]
Get:177 http://172.17.4.1/private bookworm-staging/main armhf libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB]
Get:178 http://172.17.4.1/private bookworm-staging/main armhf libpackage-stash-xs-perl armhf 0.29-1+b3 [18.4 kB]
Get:179 http://172.17.4.1/private bookworm-staging/main armhf libmoose-perl armhf 2.2200-1+b1 [802 kB]
Get:180 http://172.17.4.1/private bookworm-staging/main armhf libvariable-magic-perl armhf 0.62-1+b4 [43.1 kB]
Get:181 http://172.17.4.1/private bookworm-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:182 http://172.17.4.1/private bookworm-staging/main armhf libsub-identify-perl armhf 0.14-1+b4 [11.6 kB]
Get:183 http://172.17.4.1/private bookworm-staging/main armhf libnamespace-clean-perl all 0.27-1 [17.3 kB]
Get:184 http://172.17.4.1/private bookworm-staging/main armhf libcurl3-gnutls armhf 7.83.0-1 [313 kB]
Get:185 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-perl armhf 4.17-7+b2 [60.5 kB]
Get:186 http://172.17.4.1/private bookworm-staging/main armhf libwww-curl-simple-perl all 0.100191-2 [12.5 kB]
Get:187 http://172.17.4.1/private bookworm-staging/main armhf dh-r all 20210816 [41.6 kB]
Get:188 http://172.17.4.1/private bookworm-staging/main armhf libboost1.74-dev armhf 1.74.0-14+b2 [9533 kB]
Get:189 http://172.17.4.1/private bookworm-staging/main armhf libboost-dev armhf 1.74.0.3+b4 [4824 B]
Get:190 http://172.17.4.1/private bookworm-staging/main armhf libgslcblas0 armhf 2.7.1+dfsg-3 [81.4 kB]
Get:191 http://172.17.4.1/private bookworm-staging/main armhf libgsl27 armhf 2.7.1+dfsg-3 [758 kB]
Get:192 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocgenerics all 0.42.0-1 [589 kB]
Get:193 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biobase armhf 2.56.0-1 [2094 kB]
Get:194 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-s4vectors armhf 0.34.0-1 [2015 kB]
Get:195 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-iranges armhf 2.30.0-1 [2211 kB]
Get:196 http://172.17.4.1/private bookworm-staging/main armhf r-cran-dbi all 1.1.2-1 [665 kB]
Get:197 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit armhf 4.0.4+dfsg-1 [418 kB]
Get:198 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bit64 armhf 4.0.5-1 [463 kB]
Get:199 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rlang armhf 1.0.2-1 [1577 kB]
Get:200 http://172.17.4.1/private bookworm-staging/main armhf r-cran-glue armhf 1.6.2-1 [152 kB]
Get:201 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cli armhf 3.3.0-1 [1114 kB]
Get:202 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vctrs armhf 0.4.1-2 [1241 kB]
Get:203 http://172.17.4.1/private bookworm-staging/main armhf r-cran-blob all 1.2.3-1 [49.5 kB]
Get:204 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fastmap armhf 1.1.0-1 [63.1 kB]
Get:205 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cachem armhf 1.0.6-1 [70.5 kB]
Get:206 http://172.17.4.1/private bookworm-staging/main armhf r-cran-memoise all 2.0.1-1 [53.8 kB]
Get:207 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgconfig all 2.0.3-2 [19.6 kB]
Get:208 http://172.17.4.1/private bookworm-staging/main armhf r-cran-littler armhf 0.3.15-1 [92.5 kB]
Get:209 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pkgkitten all 0.2.2-2 [27.0 kB]
Get:210 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcpp armhf 1.0.8.3-1 [2072 kB]
Get:211 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plogr all 0.2.0-3 [14.9 kB]
Get:212 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rsqlite armhf 2.2.14-1 [1003 kB]
Get:213 http://172.17.4.1/private bookworm-staging/main armhf r-cran-curl armhf 4.3.2+dfsg-1 [153 kB]
Get:214 http://172.17.4.1/private bookworm-staging/main armhf r-cran-jsonlite armhf 1.8.0+dfsg-1 [433 kB]
Get:215 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mime armhf 0.12-1 [35.6 kB]
Get:216 http://172.17.4.1/private bookworm-staging/main armhf r-cran-sys armhf 3.4-1 [42.7 kB]
Get:217 http://172.17.4.1/private bookworm-staging/main armhf r-cran-askpass armhf 1.1-2 [22.3 kB]
Get:218 http://172.17.4.1/private bookworm-staging/main armhf r-cran-openssl armhf 2.0.0+dfsg-1 [384 kB]
Get:219 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r6 all 2.5.1-1 [105 kB]
Get:220 http://172.17.4.1/private bookworm-staging/main armhf r-cran-httr all 1.4.3-1 [480 kB]
Get:221 http://172.17.4.1/private bookworm-staging/main armhf r-cran-png armhf 0.1-7-4 [39.9 kB]
Get:222 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-zlibbioc all 1.42.0+dfsg-1 [9136 B]
Get:223 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-xvector armhf 0.36.0-1 [617 kB]
Get:224 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:225 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcurl armhf 1.98-1.6-1 [795 kB]
Get:226 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodbdata all 1.2.8-1 [11.5 MB]
Get:227 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomeinfodb all 1.32.2-1 [3891 kB]
Get:228 http://172.17.4.1/private bookworm-staging/main armhf r-cran-crayon all 1.5.1-1 [162 kB]
Get:229 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biostrings armhf 2.64.0-1 [13.9 MB]
Get:230 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-keggrest all 1.36.0+dfsg-1 [179 kB]
Get:231 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-annotationdbi all 1.58.0-1 [4704 kB]
Get:232 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xml armhf 3.99-0.9-1 [1706 kB]
Get:233 http://172.17.4.1/private bookworm-staging/main armhf r-cran-xtable all 1:1.8-4-2 [689 kB]
Get:234 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-annotate all 1.74.0+dfsg-1 [1724 kB]
Get:235 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocio all 1.6.0+dfsg-1 [200 kB]
Get:236 http://172.17.4.1/private bookworm-staging/main armhf r-cran-formatr all 1.12-1 [151 kB]
Get:237 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:238 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:239 http://172.17.4.1/private bookworm-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:240 http://172.17.4.1/private bookworm-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:241 http://172.17.4.1/private bookworm-staging/main armhf r-cran-bh all 1.74.0-2 [5524 B]
Get:242 http://172.17.4.1/private bookworm-staging/main armhf r-cran-codetools all 0.2-18-1 [91.8 kB]
Get:243 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-biocparallel armhf 1.30.2-2 [1451 kB]
Get:244 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicranges armhf 1.48.0+dfsg-1 [1796 kB]
Get:245 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rhtslib armhf 1.28.0+dfsg-1 [947 kB]
Get:246 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rsamtools armhf 2.12.0-1 [3535 kB]
Get:247 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrixstats armhf 0.62.0-1 [449 kB]
Get:248 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-matrixgenerics all 1.8.0-1 [299 kB]
Get:249 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lattice armhf 0.20-45-3 [1176 kB]
Get:250 http://172.17.4.1/private bookworm-staging/main armhf r-cran-matrix armhf 1.4-1-1 [4290 kB]
Get:251 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-delayedarray armhf 0.22.0+dfsg-1 [1923 kB]
Get:252 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-summarizedexperiment all 1.26.1+dfsg-1 [2003 kB]
Get:253 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-genomicalignments armhf 1.32.0-1 [2098 kB]
Get:254 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rjson armhf 0.2.21-1 [137 kB]
Get:255 http://172.17.4.1/private bookworm-staging/main armhf r-cran-yaml armhf 2.3.5-1 [93.4 kB]
Get:256 http://172.17.4.1/private bookworm-staging/main armhf r-cran-restfulr armhf 0.0.13-2 [346 kB]
Get:257 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-rtracklayer armhf 1.56.0-1 [5075 kB]
Get:258 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-bsgenome all 1.64.0-1 [6980 kB]
Get:259 http://172.17.4.1/private bookworm-staging/main armhf r-cran-clipr all 0.8.0-1 [53.0 kB]
Get:260 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ellipsis armhf 0.3.2-2 [35.1 kB]
Get:261 http://172.17.4.1/private bookworm-staging/main armhf r-cran-lifecycle all 1.0.1-1 [103 kB]
Get:262 http://172.17.4.1/private bookworm-staging/main armhf r-cran-hms all 1.1.1-1 [103 kB]
Get:263 http://172.17.4.1/private bookworm-staging/main armhf r-cran-fansi armhf 1.0.3-1 [611 kB]
Get:264 http://172.17.4.1/private bookworm-staging/main armhf r-cran-magrittr armhf 2.0.3-1 [200 kB]
Get:265 http://172.17.4.1/private bookworm-staging/main armhf r-cran-utf8 armhf 1.2.2-1 [129 kB]
Get:266 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pillar all 1.7.0+dfsg-1 [440 kB]
Get:267 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tibble armhf 3.1.6+dfsg-1 [460 kB]
Get:268 http://172.17.4.1/private bookworm-staging/main armhf r-cran-cpp11 all 0.4.2-1 [223 kB]
Get:269 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tzdb armhf 0.3.0-1 [476 kB]
Get:270 http://172.17.4.1/private bookworm-staging/main armhf r-cran-purrr armhf 0.3.4-1+b1 [402 kB]
Get:271 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tidyselect armhf 1.1.2+dfsg-1 [196 kB]
Get:272 http://172.17.4.1/private bookworm-staging/main armhf r-cran-withr all 2.5.0-1 [236 kB]
Get:273 http://172.17.4.1/private bookworm-staging/main armhf r-cran-prettyunits all 1.1.1-2 [39.1 kB]
Get:274 http://172.17.4.1/private bookworm-staging/main armhf r-cran-progress all 1.2.2-2 [88.9 kB]
Get:275 http://172.17.4.1/private bookworm-staging/main armhf r-cran-vroom armhf 1.5.7-1 [793 kB]
Get:276 http://172.17.4.1/private bookworm-staging/main armhf r-cran-readr armhf 2.1.2-1 [770 kB]
Get:277 http://172.17.4.1/private bookworm-staging/main armhf r-cran-plyr armhf 1.8.7-1 [833 kB]
Get:278 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringi armhf 1.7.6-1+b1 [774 kB]
Get:279 http://172.17.4.1/private bookworm-staging/main armhf r-cran-stringr all 1.4.0-2 [199 kB]
Get:280 http://172.17.4.1/private bookworm-staging/main armhf r-cran-reshape2 armhf 1.4.4-2 [110 kB]
Get:281 http://172.17.4.1/private bookworm-staging/main armhf r-cran-digest armhf 0.6.29-1 [183 kB]
Get:282 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gtable all 0.3.0+dfsg-2 [163 kB]
Get:283 http://172.17.4.1/private bookworm-staging/main armhf r-cran-isoband armhf 0.2.5-1 [1756 kB]
Get:284 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mass armhf 7.3-57-1 [1113 kB]
Get:285 http://172.17.4.1/private bookworm-staging/main armhf r-cran-nlme armhf 3.1.157-1 [2258 kB]
Get:286 http://172.17.4.1/private bookworm-staging/main armhf r-cran-mgcv armhf 1.8-40-1 [2993 kB]
Get:287 http://172.17.4.1/private bookworm-staging/main armhf r-cran-farver armhf 2.1.0-1 [1394 kB]
Get:288 http://172.17.4.1/private bookworm-staging/main armhf r-cran-labeling all 0.4.2-1 [62.7 kB]
Get:289 http://172.17.4.1/private bookworm-staging/main armhf r-cran-colorspace armhf 2.0-3+dfsg-1 [1697 kB]
Get:290 http://172.17.4.1/private bookworm-staging/main armhf r-cran-munsell all 0.5.0-2 [236 kB]
Get:291 http://172.17.4.1/private bookworm-staging/main armhf r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB]
Get:292 http://172.17.4.1/private bookworm-staging/main armhf r-cran-viridislite all 0.4.0-2 [1298 kB]
Get:293 http://172.17.4.1/private bookworm-staging/main armhf r-cran-scales all 1.1.1-1 [557 kB]
Get:294 http://172.17.4.1/private bookworm-staging/main armhf r-cran-ggplot2 all 3.3.6+dfsg-1 [3213 kB]
Get:295 http://172.17.4.1/private bookworm-staging/main armhf r-cran-pracma all 2.3.8-1 [1689 kB]
Get:296 http://172.17.4.1/private bookworm-staging/main armhf r-cran-powerlaw all 0.70.6-2 [3367 kB]
Get:297 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-go.db all 3.15.0-1 [12.4 MB]
Get:298 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r.methodss3 all 1.8.1-1 [83.1 kB]
Get:299 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r.oo all 1.24.0-1 [955 kB]
Get:300 http://172.17.4.1/private bookworm-staging/main armhf r-cran-r.utils all 2.11.0-1 [1391 kB]
Get:301 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-cner armhf 1.32.0+dfsg-1 [8382 kB]
Get:302 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-dirichletmultinomial armhf 1.38.0-1 [597 kB]
Get:303 http://172.17.4.1/private bookworm-staging/main armhf r-bioc-seqlogo all 1.62.0+dfsg-1 [155 kB]
Get:304 http://172.17.4.1/private bookworm-staging/main armhf r-cran-catools armhf 1.18.2-1 [200 kB]
Get:305 http://172.17.4.1/private bookworm-staging/main armhf r-cran-gtools armhf 3.9.2-2 [360 kB]
Get:306 http://172.17.4.1/private bookworm-staging/main armhf r-cran-tfmpvalue armhf 0.0.8-2 [50.2 kB]
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Setting up r-base-core (4.2.0-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.1-1) ...
Setting up r-cran-gtable (0.3.0+dfsg-2) ...
Setting up r-cran-labeling (0.4.2-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.20-45-3) ...
Setting up r-cran-nlme (3.1.157-1) ...
Setting up r-cran-farver (2.1.0-1) ...
Setting up r-cran-formatr (1.12-1) ...
Setting up r-cran-xml (3.99-0.9-1) ...
Setting up libpackage-deprecationmanager-perl (0.17-1.1) ...
Setting up r-cran-viridislite (0.4.0-2) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-1+b5) ...
Setting up r-cran-clipr (0.8.0-1) ...
Setting up r-cran-r6 (2.5.1-1) ...
Setting up r-cran-pkgkitten (0.2.2-2) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-cran-magrittr (2.0.3-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.8-1) ...
Setting up r-cran-littler (0.3.15-1) ...
Setting up r-cran-rcpp (1.0.8.3-1) ...
Setting up r-cran-curl (4.3.2+dfsg-1) ...
Setting up r-cran-codetools (0.2-18-1) ...
Setting up r-bioc-biocgenerics (0.42.0-1) ...
Setting up r-cran-rlang (1.0.2-1) ...
Setting up r-cran-matrixstats (0.62.0-1) ...
Setting up r-base-dev (4.2.0-1) ...
Setting up r-cran-pracma (2.3.8-1) ...
Setting up r-bioc-matrixgenerics (1.8.0-1) ...
Setting up r-cran-sys (3.4-1) ...
Setting up r-cran-plogr (0.2.0-3) ...
Setting up r-cran-withr (2.5.0-1) ...
Setting up r-cran-mime (0.12-1) ...
Setting up libmoose-perl:armhf (2.2200-1+b1) ...
Setting up r-cran-digest (0.6.29-1) ...
Setting up r-cran-yaml (2.3.5-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-dbi (1.1.2-1) ...
Setting up r-cran-prettyunits (1.1.1-2) ...
Setting up r-cran-fansi (1.0.3-1) ...
Setting up r-cran-mass (7.3-57-1) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-gtools (3.9.2-2) ...
Setting up r-cran-glue (1.6.2-1) ...
Setting up r-cran-bit (4.0.4+dfsg-1) ...
Setting up r-cran-xtable (1:1.8-4-2) ...
Setting up r-cran-cli (3.3.0-1) ...
Setting up r-cran-lifecycle (1.0.1-1) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-cran-bit64 (4.0.5-1) ...
Setting up r-bioc-zlibbioc (1.42.0+dfsg-1) ...
Setting up r-cran-askpass (1.1-2) ...
Setting up r-cran-fastmap (1.1.0-1) ...
Setting up r-cran-png (0.1-7-4) ...
Setting up r-cran-r.methodss3 (1.8.1-1) ...
Setting up r-bioc-biobase (2.56.0-1) ...
Setting up r-cran-jsonlite (1.8.0+dfsg-1) ...
Setting up r-cran-pkgconfig (2.0.3-2) ...
Setting up r-cran-utf8 (1.2.2-1) ...
Setting up r-cran-colorspace (2.0-3+dfsg-1) ...
Setting up r-cran-stringi (1.7.6-1+b1) ...
Setting up r-cran-cpp11 (0.4.2-1) ...
Setting up r-cran-plyr (1.8.7-1) ...
Setting up r-cran-rcolorbrewer (1.1-3-1) ...
Setting up r-bioc-s4vectors (0.34.0-1) ...
Setting up r-cran-isoband (0.2.5-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-1) ...
Setting up r-cran-purrr (0.3.4-1+b1) ...
Setting up r-cran-matrix (1.4-1-1) ...
Setting up r-cran-mgcv (1.8-40-1) ...
Setting up r-cran-powerlaw (0.70.6-2) ...
Setting up r-cran-cachem (1.0.6-1) ...
Setting up r-cran-tfmpvalue (0.0.8-2) ...
Setting up r-cran-catools (1.18.2-1) ...
Setting up r-bioc-iranges (2.30.0-1) ...
Setting up r-cran-rjson (0.2.21-1) ...
Setting up r-cran-tzdb (0.3.0-1) ...
Setting up r-cran-rcurl (1.98-1.6-1) ...
Setting up r-bioc-seqlogo (1.62.0+dfsg-1) ...
Setting up r-cran-restfulr (0.0.13-2) ...
Setting up r-cran-vctrs (0.4.1-2) ...
Setting up r-bioc-delayedarray (0.22.0+dfsg-1) ...
Setting up r-cran-ellipsis (0.3.2-2) ...
Setting up r-cran-openssl (2.0.0+dfsg-1) ...
Setting up r-cran-stringr (1.4.0-2) ...
Setting up r-bioc-biocparallel (1.30.2-2) ...
Setting up libwww-curl-simple-perl (0.100191-2) ...
Setting up r-bioc-rhtslib (1.28.0+dfsg-1) ...
Setting up r-cran-munsell (0.5.0-2) ...
Setting up r-bioc-dirichletmultinomial (1.38.0-1) ...
Setting up r-bioc-biocio (1.6.0+dfsg-1) ...
Setting up r-cran-r.oo (1.24.0-1) ...
Setting up r-cran-tidyselect (1.1.2+dfsg-1) ...
Setting up r-cran-reshape2 (1.4.4-2) ...
Setting up r-bioc-genomeinfodb (1.32.2-1) ...
Setting up r-cran-httr (1.4.3-1) ...
Setting up r-cran-hms (1.1.1-1) ...
Setting up r-cran-scales (1.1.1-1) ...
Setting up r-cran-memoise (2.0.1-1) ...
Setting up r-cran-blob (1.2.3-1) ...
Setting up r-bioc-xvector (0.36.0-1) ...
Setting up dh-r (20210816) ...
Setting up r-cran-rsqlite (2.2.14-1) ...
Setting up r-cran-progress (1.2.2-2) ...
Setting up r-cran-pillar (1.7.0+dfsg-1) ...
Setting up r-cran-r.utils (2.11.0-1) ...
Setting up r-bioc-genomicranges (1.48.0+dfsg-1) ...
Setting up r-bioc-biostrings (2.64.0-1) ...
Setting up r-cran-tibble (3.1.6+dfsg-1) ...
Setting up r-bioc-rsamtools (2.12.0-1) ...
Setting up r-bioc-summarizedexperiment (1.26.1+dfsg-1) ...
Setting up r-cran-vroom (1.5.7-1) ...
Setting up r-bioc-keggrest (1.36.0+dfsg-1) ...
Setting up r-cran-ggplot2 (3.3.6+dfsg-1) ...
Setting up r-bioc-annotationdbi (1.58.0-1) ...
Setting up r-bioc-go.db (3.15.0-1) ...
Setting up r-bioc-annotate (1.74.0+dfsg-1) ...
Setting up r-cran-readr (2.1.2-1) ...
Setting up r-bioc-genomicalignments (1.32.0-1) ...
Setting up r-bioc-rtracklayer (1.56.0-1) ...
Setting up r-bioc-cner (1.32.0+dfsg-1) ...
Setting up r-bioc-bsgenome (1.64.0-1) ...
Setting up sbuild-build-depends-r-bioc-tfbstools-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.33-7+rpi1) ...
Processing triggers for ca-certificates (20211016) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.9.0-0.bpo.6-armmp armhf (armv7l)
Toolchain package versions: binutils_2.38-3+rpi1 dpkg-dev_1.21.7+rpi1 g++-11_11.3.0-1+rpi1 gcc-11_11.3.0-1+rpi1 libc6-dev_2.33-7+rpi1 libstdc++-11-dev_11.3.0-1+rpi1 libstdc++6_12.1.0-2+rpi1 linux-libc-dev_5.16.18-1+rpi1
Package versions: adduser_3.121 apt_2.4.5 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2+rpi1 base-passwd_3.5.52 bash_5.1-6 binutils_2.38-3+rpi1 binutils-arm-linux-gnueabihf_2.38-3+rpi1 binutils-common_2.38-3+rpi1 bsdextrautils_2.38-4 bsdutils_1:2.38-4 build-essential_12.9 bzip2_1.0.8-5 ca-certificates_20211016 coreutils_8.32-4.1 cpp_4:11.2.0-2+rpi1 cpp-11_11.3.0-1+rpi1 dash_0.5.11+git20210903+057cd650a4ed-8 dctrl-tools_2.24-3 debconf_1.5.79 debhelper_13.7.1 debianutils_5.7-0.1 dh-autoreconf_20 dh-r_20210816 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dirmngr_2.2.27-3 dpkg_1.21.7+rpi1 dpkg-dev_1.21.7+rpi1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.28-1 file_1:5.41-4 findutils_4.9.0-2 fontconfig_2.13.1-4.4 fontconfig-config_2.13.1-4.4 fonts-dejavu-core_2.37-2 g++_4:11.2.0-2+rpi1 g++-11_11.3.0-1+rpi1 gcc_4:11.2.0-2+rpi1 gcc-11_11.3.0-1+rpi1 gcc-11-base_11.3.0-1+rpi1 gcc-12-base_12.1.0-2+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 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r-bioc-rsamtools_2.12.0-1 r-bioc-rtracklayer_1.56.0-1 r-bioc-s4vectors_0.34.0-1 r-bioc-seqlogo_1.62.0+dfsg-1 r-bioc-summarizedexperiment_1.26.1+dfsg-1 r-bioc-xvector_0.36.0-1 r-bioc-zlibbioc_1.42.0+dfsg-1 r-cran-askpass_1.1-2 r-cran-bh_1.74.0-2 r-cran-bit_4.0.4+dfsg-1 r-cran-bit64_4.0.5-1 r-cran-bitops_1.0-7-1 r-cran-blob_1.2.3-1 r-cran-cachem_1.0.6-1 r-cran-catools_1.18.2-1 r-cran-cli_3.3.0-1 r-cran-clipr_0.8.0-1 r-cran-codetools_0.2-18-1 r-cran-colorspace_2.0-3+dfsg-1 r-cran-cpp11_0.4.2-1 r-cran-crayon_1.5.1-1 r-cran-curl_4.3.2+dfsg-1 r-cran-dbi_1.1.2-1 r-cran-digest_0.6.29-1 r-cran-ellipsis_0.3.2-2 r-cran-fansi_1.0.3-1 r-cran-farver_2.1.0-1 r-cran-fastmap_1.1.0-1 r-cran-formatr_1.12-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-ggplot2_3.3.6+dfsg-1 r-cran-glue_1.6.2-1 r-cran-gtable_0.3.0+dfsg-2 r-cran-gtools_3.9.2-2 r-cran-hms_1.1.1-1 r-cran-httr_1.4.3-1 r-cran-isoband_0.2.5-1 r-cran-jsonlite_1.8.0+dfsg-1 r-cran-labeling_0.4.2-1 r-cran-lambda.r_1.2.4-2 r-cran-lattice_0.20-45-3 r-cran-lifecycle_1.0.1-1 r-cran-littler_0.3.15-1 r-cran-magrittr_2.0.3-1 r-cran-mass_7.3-57-1 r-cran-matrix_1.4-1-1 r-cran-matrixstats_0.62.0-1 r-cran-memoise_2.0.1-1 r-cran-mgcv_1.8-40-1 r-cran-mime_0.12-1 r-cran-munsell_0.5.0-2 r-cran-nlme_3.1.157-1 r-cran-openssl_2.0.0+dfsg-1 r-cran-pillar_1.7.0+dfsg-1 r-cran-pkgconfig_2.0.3-2 r-cran-pkgkitten_0.2.2-2 r-cran-plogr_0.2.0-3 r-cran-plyr_1.8.7-1 r-cran-png_0.1-7-4 r-cran-powerlaw_0.70.6-2 r-cran-pracma_2.3.8-1 r-cran-prettyunits_1.1.1-2 r-cran-progress_1.2.2-2 r-cran-purrr_0.3.4-1+b1 r-cran-r.methodss3_1.8.1-1 r-cran-r.oo_1.24.0-1 r-cran-r.utils_2.11.0-1 r-cran-r6_2.5.1-1 r-cran-rcolorbrewer_1.1-3-1 r-cran-rcpp_1.0.8.3-1 r-cran-rcurl_1.98-1.6-1 r-cran-readr_2.1.2-1 r-cran-reshape2_1.4.4-2 r-cran-restfulr_0.0.13-2 r-cran-rjson_0.2.21-1 r-cran-rlang_1.0.2-1 r-cran-rsqlite_2.2.14-1 r-cran-scales_1.1.1-1 r-cran-snow_1:0.4.4-2 r-cran-stringi_1.7.6-1+b1 r-cran-stringr_1.4.0-2 r-cran-sys_3.4-1 r-cran-tfmpvalue_0.0.8-2 r-cran-tibble_3.1.6+dfsg-1 r-cran-tidyselect_1.1.2+dfsg-1 r-cran-tzdb_0.3.0-1 r-cran-utf8_1.2.2-1 r-cran-vctrs_0.4.1-2 r-cran-viridislite_0.4.0-2 r-cran-vroom_1.5.7-1 r-cran-withr_2.5.0-1 r-cran-xml_3.99-0.9-1 r-cran-xtable_1:1.8-4-2 r-cran-yaml_2.3.5-1 raspbian-archive-keyring_20120528.2 readline-common_8.1.2-1.2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-tfbstools-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sgml-base_1.30 sysvinit-utils_3.03-1 tar_1.34+dfsg-1 tzdata_2022a-1 ucf_3.0043 unzip_6.0-26 util-linux_2.37.3-1 x11-common_1:7.7+23 xauth_1:1.1.1-1 xdg-utils_1.1.3-4.1 xz-utils_5.2.5-2.1 zip_3.0-12 zlib1g_1:1.2.11.dfsg-4 zlib1g-dev_1:1.2.11.dfsg-4
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.pC72l0OC/trustedkeys.kbx': General error
gpgv: Signature made Mon May 16 19:29:33 2022 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify signature ./r-bioc-tfbstools_1.34.0+dfsg-1.dsc
dpkg-source: info: extracting r-bioc-tfbstools in /<<BUILDDIR>>/r-bioc-tfbstools-1.34.0+dfsg
dpkg-source: info: unpacking r-bioc-tfbstools_1.34.0+dfsg.orig.tar.xz
dpkg-source: info: unpacking r-bioc-tfbstools_1.34.0+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying Fix_autopkgtest.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=bookworm-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=bookworm-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=bookworm-staging-armhf-sbuild-6ce40ce0-bb31-46d6-a6cc-d7f39c16ec16
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=xterm
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-tfbstools
dpkg-buildpackage: info: source version 1.34.0+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules binary-arch
dh binary-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_auto_install --destdir=debian/r-bioc-tfbstools/ -a -O--buildsystem=R
I: R packages needed for DEP8: testthat
I: R Package: TFBSTools Version: 1.34.0
I: Building using R version 4.2.0-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Mon, 16 May 2022 21:24:41 +0200
mkdir -p /<<BUILDDIR>>/r-bioc-tfbstools-1.34.0\+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library
R CMD INSTALL -l /<<BUILDDIR>>/r-bioc-tfbstools-1.34.0\+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 16 May 2022 21:24:41 +0200'"
* installing *source* package 'TFBSTools' ...
** using staged installation
** libs
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.34.0+dfsg/src'
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-2bkVJg/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c matrixAlignerDynamic.c -o matrixAlignerDynamic.o
gcc -I"/usr/share/R/include" -DNDEBUG -fpic -g -O2 -ffile-prefix-map=/build/r-base-2bkVJg/r-base-4.2.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c R_init_TFBSTools.c -o R_init_TFBSTools.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o TFBSTools.so matrixAlignerDynamic.o R_init_TFBSTools.o -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.34.0+dfsg/src'
make[1]: Entering directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.34.0+dfsg/src'
make[1]: Leaving directory '/<<BUILDDIR>>/r-bioc-tfbstools-1.34.0+dfsg/src'
installing to /<<BUILDDIR>>/r-bioc-tfbstools-1.34.0+dfsg/debian/r-bioc-tfbstools/usr/lib/R/site-library/00LOCK-r-bioc-tfbstools-1.34.0+dfsg/00new/TFBSTools/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
Creating a new generic function for 'seqLogo' in package 'TFBSTools'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (TFBSTools)
W: Ignoring specified R dependency: R (>= 3.2.2)
I: Using r-cran-testthat for Recommends:testthat
I: Using r-bioc-biocstyle for Suggests:BiocStyle (>= 1.7.7)
W: Cannot find a debian package for Suggests:JASPAR2014 (>= 1.4.0)
I: Using r-cran-knitr for Suggests:knitr (>= 1.11)
W: Cannot find a debian package for Suggests:JASPAR2016 (>= 1.0.0)
W: Cannot find a debian package for Suggests:JASPAR2018 (>= 1.0.0)
I: Using r-cran-rmarkdown for Suggests:rmarkdown
I: Using r-bioc-biobase for Imports:Biobase (>= 2.28)
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.36.4)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.14.0)
I: Using r-bioc-biocparallel for Imports:BiocParallel (>= 1.2.21)
I: Using r-bioc-bsgenome for Imports:BSgenome (>= 1.36.3)
I: Using r-cran-catools for Imports:caTools (>= 1.17.1)
I: Using r-bioc-cner for Imports:CNEr (>= 1.4.0)
I: Using r-bioc-dirichletmultinomial for Imports:DirichletMultinomial (>= 1.10.0)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.6.1)
I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.20.6)
I: Using r-cran-gtools for Imports:gtools (>= 3.5.0)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.2.7)
I: Using r-cran-dbi for Imports:DBI (>= 0.6)
I: Using r-cran-rsqlite for Imports:RSQLite (>= 1.0.0)
I: Using r-bioc-rtracklayer for Imports:rtracklayer (>= 1.28.10)
I: Using r-bioc-seqlogo for Imports:seqLogo (>= 1.34.0)
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.9.25)
I: Using r-cran-tfmpvalue for Imports:TFMPvalue (>= 0.0.5)
I: Using r-cran-xml for Imports:XML (>= 3.98-1.3)
I: Using r-bioc-xvector for Imports:XVector (>= 0.8.0)
I: BioConductor API version: r-api-bioc-3.15
I: Use r-bioc-tfbstools as Debian binary package for variables substitution
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installsystemduser -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_dwz -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-tfbstools-dbgsym' in '../r-bioc-tfbstools-dbgsym_1.34.0+dfsg-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-tfbstools' in '../r-bioc-tfbstools_1.34.0+dfsg-1_armhf.deb'.
dpkg-genbuildinfo --build=any -O../r-bioc-tfbstools_1.34.0+dfsg-1_armhf.buildinfo
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> -O../r-bioc-tfbstools_1.34.0+dfsg-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2022-05-25T23:24:20Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-tfbstools_1.34.0+dfsg-1_armhf.changes:
---------------------------------------------
Format: 1.8
Date: Mon, 16 May 2022 21:24:41 +0200
Source: r-bioc-tfbstools
Binary: r-bioc-tfbstools r-bioc-tfbstools-dbgsym
Architecture: armhf
Version: 1.34.0+dfsg-1
Distribution: bookworm-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-tfbstools - GNU R Transcription Factor Binding Site (TFBS) Analysis
Changes:
r-bioc-tfbstools (1.34.0+dfsg-1) unstable; urgency=medium
.
* New upstream version
* Standards-Version: 4.6.1 (routine-update)
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+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-tfbstools-dbgsym_1.34.0+dfsg-1_armhf.deb
-----------------------------------------------
new Debian package, version 2.0.
size 8456 bytes: control archive=544 bytes.
411 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-tfbstools-dbgsym
Source: r-bioc-tfbstools
Version: 1.34.0+dfsg-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 21
Depends: r-bioc-tfbstools (= 1.34.0+dfsg-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-tfbstools
Build-Ids: 36114e722d205387eb3276616e7bf1e58f40f093
drwxr-xr-x root/root 0 2022-05-16 19:24 ./
drwxr-xr-x root/root 0 2022-05-16 19:24 ./usr/
drwxr-xr-x root/root 0 2022-05-16 19:24 ./usr/lib/
drwxr-xr-x root/root 0 2022-05-16 19:24 ./usr/lib/debug/
drwxr-xr-x root/root 0 2022-05-16 19:24 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2022-05-16 19:24 ./usr/lib/debug/.build-id/36/
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drwxr-xr-x root/root 0 2022-05-16 19:24 ./usr/share/
drwxr-xr-x root/root 0 2022-05-16 19:24 ./usr/share/doc/
lrwxrwxrwx root/root 0 2022-05-16 19:24 ./usr/share/doc/r-bioc-tfbstools-dbgsym -> r-bioc-tfbstools
r-bioc-tfbstools_1.34.0+dfsg-1_armhf.deb
----------------------------------------
new Debian package, version 2.0.
size 1110068 bytes: control archive=2540 bytes.
1478 bytes, 18 lines control
4535 bytes, 53 lines md5sums
Package: r-bioc-tfbstools
Version: 1.34.0+dfsg-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 1969
Depends: r-base-core (>= 4.2.0-1), r-api-4.0, r-api-bioc-3.15, r-bioc-biobase (>= 2.28), r-bioc-biostrings (>= 2.36.4), r-bioc-biocgenerics (>= 0.14.0), r-bioc-biocparallel (>= 1.2.21), r-bioc-bsgenome (>= 1.36.3), r-cran-catools (>= 1.17.1), r-bioc-cner (>= 1.4.0), r-bioc-dirichletmultinomial (>= 1.10.0), r-bioc-genomeinfodb (>= 1.6.1), r-bioc-genomicranges (>= 1.20.6), r-cran-gtools (>= 3.5.0), r-bioc-iranges (>= 2.2.7), r-cran-dbi (>= 0.6), r-cran-rsqlite (>= 1.0.0), r-bioc-rtracklayer (>= 1.28.10), r-bioc-seqlogo (>= 1.34.0), r-bioc-s4vectors (>= 0.9.25), r-cran-tfmpvalue (>= 0.0.5), r-cran-xml (>= 3.98-1.3), r-bioc-xvector (>= 0.8.0), libc6 (>= 2.4)
Recommends: r-cran-testthat
Suggests: r-bioc-biocstyle (>= 1.7.7), r-cran-knitr (>= 1.11), r-cran-rmarkdown
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/TFBSTools/
Description: GNU R Transcription Factor Binding Site (TFBS) Analysis
TFBSTools is a package for the analysis and manipulation of
transcription factor binding sites. It includes matrices conversion
between Position Frequency Matirx (PFM), Position Weight Matirx (PWM)
and Information Content Matrix (ICM). It can also scan putative TFBS
from sequence/alignment, query JASPAR database and provides a wrapper of
de novo motif discovery software.
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+------------------------------------------------------------------------------+
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+------------------------------------------------------------------------------+
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+------------------------------------------------------------------------------+
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| Summary |
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Build Architecture: armhf
Build-Space: 4148
Build-Time: 606
Distribution: bookworm-staging
Host Architecture: armhf
Install-Time: 2256
Job: r-bioc-tfbstools_1.34.0+dfsg-1
Machine Architecture: armhf
Package: r-bioc-tfbstools
Package-Time: 2915
Source-Version: 1.34.0+dfsg-1
Space: 4148
Status: successful
Version: 1.34.0+dfsg-1
--------------------------------------------------------------------------------
Finished at 2022-05-25T23:24:20Z
Build needed 00:48:35, 4148k disc space