r-bioc-shortread →
1.40.0-1 →
armhf → 2018-11-14 05:11:00
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-02
+==============================================================================+
| r-bioc-shortread 1.40.0-1 (armhf) Wed, 14 Nov 2018 04:57:25 +0000 |
+==============================================================================+
Package: r-bioc-shortread
Version: 1.40.0-1
Source Version: 1.40.0-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-613a377d-8ec6-4b1f-96c5-d49a75a8dd64' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [11.2 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.9 MB]
Fetched 24.1 MB in 9s (2730 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-shortread' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-shortread.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-shortread.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 5191 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-shortread 1.40.0-1 (dsc) [2474 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-shortread 1.40.0-1 (tar) [5183 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-shortread 1.40.0-1 (diff) [5488 B]
Fetched 5191 kB in 1s (3471 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-PmrSkR/r-bioc-shortread-1.40.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-PmrSkR' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-HyJg7Q/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-HyJg7Q/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ Packages [431 B]
Fetched 2107 B in 0s (11.0 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n krb5-locales libexpat1
libgpg-error-l10n libnss-systemd libpam-systemd libperl5.26 libsasl2-modules
libssl1.1 openssl perl-modules-5.26 systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 34 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 17628 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-cran-lattice, r-cran-latticeextra, r-bioc-xvector
dpkg-deb: building package 'sbuild-build-depends-r-bioc-shortread-dummy' in '/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive/sbuild-build-depends-r-bioc-shortread-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-shortread-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ Sources [648 B]
Get:5 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ Packages [734 B]
Fetched 2715 B in 0s (14.1 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-shortread build dependencies (apt-based resolver)
----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n krb5-locales libgpg-error-l10n
libnss-systemd libpam-systemd libperl5.26 libsasl2-modules perl-modules-5.26
systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cpp cpp-8 dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core g++ g++-8 gcc gcc-7-base gcc-8
gcc-8-base gettext gettext-base gfortran gfortran-8 gir1.2-glib-2.0
gir1.2-harfbuzz-0.0 groff-base icu-devtools intltool-debian
libarchive-zip-perl libasan5 libatomic1 libblas-dev libblas3 libbsd0
libbz2-dev libcairo2 libcc1-0 libcroco3 libcurl4 libdatrie1 libelf1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgcc-8-dev libgcc1 libgfortran-8-dev libgfortran4
libgfortran5 libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin
libglib2.0-data libglib2.0-dev libglib2.0-dev-bin libgomp1 libgraphite2-3
libgraphite2-dev libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0
libharfbuzz0b libice6 libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev
liblapack3 liblzma-dev libmagic-mgc libmagic1 libmpdec2 libncurses-dev
libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5
libpython3-stdlib libpython3.6-minimal libpython3.6-stdlib libreadline-dev
librtmp1 libsigsegv2 libsm6 libssh2-1 libstdc++-8-dev libstdc++6
libswitch-perl libtcl8.6 libthai-data libthai0 libtiff5 libtk8.6 libtool
libubsan1 libwebp6 libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1
libxt6 m4 man-db mime-support pkg-config po-debconf python3
python3-distutils python3-lib2to3 python3-minimal python3.6
python3.6-minimal r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray
r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
r-bioc-genomicranges r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors
r-bioc-summarizedexperiment r-bioc-xvector r-cran-bitops r-cran-formatr
r-cran-futile.logger r-cran-futile.options r-cran-hwriter r-cran-lambda.r
r-cran-lattice r-cran-latticeextra r-cran-matrix r-cran-matrixstats
r-cran-rcolorbrewer r-cran-rcurl r-cran-snow ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation cpp-doc gcc-8-locales debtags dh-make gcc-8-doc libstdc++6-8-dbg
gcc-multilib manpages-dev flex bison gdb gcc-doc libgcc1-dbg libgomp1-dbg
libitm1-dbg libatomic1-dbg libasan5-dbg liblsan0-dbg libtsan0-dbg
libubsan1-dbg libmpx2-dbg libquadmath0-dbg gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-8-doc libgfortran5-dbg
libcoarrays-dev groff liblapack-doc libglib2.0-doc libgdk-pixbuf2.0-bin
| libgdk-pixbuf2.0-dev libxml2-utils libgraphite2-utils icu-doc liblzma-doc
ncurses-doc readline-doc libstdc++-8-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk
python3-venv python3.6-venv python3.6-doc binfmt-support ess r-doc-info
| r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-bioc-annotationdbi r-bioc-affy r-bioc-deseq2 r-bioc-annotate
r-cran-foreach r-cran-bbmisc r-bioc-variantannotation r-bioc-shortread
r-cran-codetools r-cran-knitr r-cran-data.table r-bioc-bsgenome libgdal-dev
r-bioc-genomicfeatures r-bioc-rtracklayer r-bioc-edger r-bioc-gviz
r-bioc-annotationhub r-bioc-graph r-cran-rmarkdown r-cran-jsonlite
r-cran-shiny r-cran-base64enc r-cran-ggplot2 r-cran-xml r-cran-rmpi
r-cran-rsprng r-cran-rlecuyer
Recommended packages:
devscripts curl | wget | lynx bzip2-doc libarchive-cpio-perl
shared-mime-info xdg-user-dirs libpng-tools publicsuffix libltdl-dev
libmail-sendmail-perl r-recommended r-doc-html r-cran-runit r-cran-batchjobs
r-cran-doparallel r-cran-batchtools r-cran-rmpi r-bioc-genefilter
r-bioc-shortread r-cran-digest r-bioc-annotate r-cran-testit
r-cran-codetools r-cran-survival r-cran-testthat libfile-mimeinfo-perl
libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils dctrl-tools debhelper
dh-autoreconf dh-r dh-strip-nondeterminism dwz file fontconfig
fontconfig-config fonts-dejavu-core gcc-7-base gettext gettext-base gfortran
gfortran-8 gir1.2-glib-2.0 gir1.2-harfbuzz-0.0 groff-base icu-devtools
intltool-debian libarchive-zip-perl libblas-dev libblas3 libbsd0 libbz2-dev
libcairo2 libcroco3 libcurl4 libdatrie1 libelf1
libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
libfreetype6 libfribidi0 libgfortran-8-dev libgfortran4 libgfortran5
libgirepository-1.0-1 libglib2.0-0 libglib2.0-bin libglib2.0-data
libglib2.0-dev libglib2.0-dev-bin libgraphite2-3 libgraphite2-dev
libharfbuzz-dev libharfbuzz-gobject0 libharfbuzz-icu0 libharfbuzz0b libice6
libicu-dev libicu-le-hb-dev libicu-le-hb0 libicu60 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libmpdec2 libncurses-dev libncurses5-dev
libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0
libpaper-utils libpaper1 libpcre16-3 libpcre3-dev libpcre32-3 libpcrecpp0v5
libpipeline1 libpixman-1-0 libpng-dev libpsl5 libpython3-stdlib
libpython3.6-minimal libpython3.6-stdlib libreadline-dev librtmp1
libsigsegv2 libsm6 libssh2-1 libswitch-perl libtcl8.6 libthai-data libthai0
libtiff5 libtk8.6 libtool libwebp6 libx11-6 libx11-data libxau6
libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mime-support pkg-config
po-debconf python3 python3-distutils python3-lib2to3 python3-minimal
python3.6 python3.6-minimal r-base-core r-base-dev r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges
r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector
r-cran-bitops r-cran-formatr r-cran-futile.logger r-cran-futile.options
r-cran-hwriter r-cran-lambda.r r-cran-lattice r-cran-latticeextra
r-cran-matrix r-cran-matrixstats r-cran-rcolorbrewer r-cran-rcurl
r-cran-snow sbuild-build-depends-r-bioc-shortread-dummy ucf unzip x11-common
xauth xdg-utils zip zlib1g-dev
The following packages will be upgraded:
cpp cpp-8 g++ g++-8 gcc gcc-8 gcc-8-base libasan5 libatomic1 libcc1-0
libgcc-8-dev libgcc1 libgomp1 libstdc++-8-dev libstdc++6 libubsan1
16 upgraded, 164 newly installed, 0 to remove and 18 not upgraded.
Need to get 155 MB/158 MB of archives.
After this operation, 330 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-HyJg7Q/apt_archive ./ sbuild-build-depends-r-bioc-shortread-dummy 0.invalid.0 [1012 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf libbsd0 armhf 0.9.1-1 [104 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libubsan1 armhf 8.2.0-9+rpi1 [104 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf gcc-8-base armhf 8.2.0-9+rpi1 [188 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libgcc1 armhf 1:8.2.0-9+rpi1 [36.6 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf libgomp1 armhf 8.2.0-9+rpi1 [64.2 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libatomic1 armhf 8.2.0-9+rpi1 [8096 B]
Get:9 http://172.17.0.1/private buster-staging/main armhf libasan5 armhf 8.2.0-9+rpi1 [318 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf cpp-8 armhf 8.2.0-9+rpi1 [5474 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf libcc1-0 armhf 8.2.0-9+rpi1 [30.2 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf g++-8 armhf 8.2.0-9+rpi1 [5942 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf gcc-8 armhf 8.2.0-9+rpi1 [5847 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf libgcc-8-dev armhf 8.2.0-9+rpi1 [598 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf libstdc++-8-dev armhf 8.2.0-9+rpi1 [1564 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libstdc++6 armhf 8.2.0-9+rpi1 [325 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-2 [25.1 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.4-3 [1160 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libpython3.6-minimal armhf 3.6.7-1 [567 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf python3.6-minimal armhf 3.6.7-1 [1380 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf python3-minimal armhf 3.6.7-1 [36.4 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf mime-support all 3.61 [37.1 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf libmpdec2 armhf 2.4.2-2 [67.2 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf libpython3.6-stdlib armhf 3.6.7-1 [1639 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf python3.6 armhf 3.6.7-1 [240 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf libpython3-stdlib armhf 3.6.7-1 [19.9 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf python3 armhf 3.6.7-1 [61.4 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libmagic-mgc armhf 1:5.34-2 [239 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf libmagic1 armhf 1:5.34-2 [107 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf file armhf 1:5.34-2 [65.0 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-8 [117 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf libswitch-perl all 2.17-2 [20.5 kB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-2 [32.3 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:37 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.16.1-4 [771 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-8 [434 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf g++ armhf 4:8.2.0-2+rpi1 [1628 B]
Get:41 http://172.17.0.1/private buster-staging/main armhf gcc armhf 4:8.2.0-2+rpi1 [5196 B]
Get:42 http://172.17.0.1/private buster-staging/main armhf cpp armhf 4:8.2.0-2+rpi1 [19.5 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-6 [547 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 19 [16.9 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.64-1 [96.8 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.45.0-1 [20.5 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.45.0-1 [12.4 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf libelf1 armhf 0.170-0.5 [160 kB]
Get:50 http://172.17.0.1/private buster-staging/main armhf dwz armhf 0.12-2 [67.4 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libglib2.0-0 armhf 2.58.1-2 [1051 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf libgraphite2-3 armhf 1.3.12-1 [69.1 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf libharfbuzz0b armhf 1.9.0-1+rpi1 [877 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb0 armhf 1.0.3+git161113-5 [12.8 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf libicu60 armhf 60.2-6 [7789 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf libxml2 armhf 2.9.4+dfsg1-7 [602 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-8 [1220 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.5.3 [1002 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:63 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.3-1 [73.3 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf libgfortran5 armhf 8.2.0-9+rpi1 [205 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf libblas3 armhf 3.8.0-1+b1 [104 kB]
Get:68 http://172.17.0.1/private buster-staging/main armhf fontconfig-config all 2.13.1-2 [280 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf libfontconfig1 armhf 2.13.1-2 [327 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf libxcb1 armhf 1.13.1-1 [132 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf libx11-data all 2:1.6.7-1 [298 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf libx11-6 armhf 2:1.6.7-1 [689 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf libxcb-render0 armhf 1.13.1-1 [108 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf libxcb-shm0 armhf 1.13.1-1 [99.2 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf libcairo2 armhf 1.16.0-1 [600 kB]
Get:76 http://172.17.0.1/private buster-staging/main armhf libnghttp2-14 armhf 1.34.0-1 [73.4 kB]
Get:77 http://172.17.0.1/private buster-staging/main armhf libpsl5 armhf 0.20.2-2 [52.6 kB]
Get:78 http://172.17.0.1/private buster-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2 [54.0 kB]
Get:79 http://172.17.0.1/private buster-staging/main armhf libssh2-1 armhf 1.8.0-2 [125 kB]
Get:80 http://172.17.0.1/private buster-staging/main armhf libcurl4 armhf 7.61.0-1 [282 kB]
Get:81 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-19 [191 kB]
Get:82 http://172.17.0.1/private buster-staging/main armhf liblapack3 armhf 3.8.0-1+b1 [1493 kB]
Get:83 http://172.17.0.1/private buster-staging/main armhf fontconfig armhf 2.13.1-2 [404 kB]
Get:84 http://172.17.0.1/private buster-staging/main armhf libfribidi0 armhf 1.0.5-3 [61.9 kB]
Get:85 http://172.17.0.1/private buster-staging/main armhf libthai-data all 0.1.28-1 [170 kB]
Get:86 http://172.17.0.1/private buster-staging/main armhf libdatrie1 armhf 0.2.12-1 [35.8 kB]
Get:87 http://172.17.0.1/private buster-staging/main armhf libthai0 armhf 0.1.28-1 [50.9 kB]
Get:88 http://172.17.0.1/private buster-staging/main armhf libpango-1.0-0 armhf 1.42.4-3 [166 kB]
Get:89 http://172.17.0.1/private buster-staging/main armhf libpangoft2-1.0-0 armhf 1.42.4-3 [61.8 kB]
Get:90 http://172.17.0.1/private buster-staging/main armhf libpangocairo-1.0-0 armhf 1.42.4-3 [51.4 kB]
Get:91 http://172.17.0.1/private buster-staging/main armhf libtcl8.6 armhf 8.6.8+dfsg-4 [863 kB]
Get:92 http://172.17.0.1/private buster-staging/main armhf libtiff5 armhf 4.0.9+git181026-1 [229 kB]
Get:93 http://172.17.0.1/private buster-staging/main armhf libxft2 armhf 2.3.2-2 [49.3 kB]
Get:94 http://172.17.0.1/private buster-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:95 http://172.17.0.1/private buster-staging/main armhf libtk8.6 armhf 8.6.8-4 [657 kB]
Get:96 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.5.1-1 [23.6 MB]
Get:97 http://172.17.0.1/private buster-staging/main armhf libgfortran-8-dev armhf 8.2.0-9+rpi1 [248 kB]
Get:98 http://172.17.0.1/private buster-staging/main armhf gfortran-8 armhf 8.2.0-9+rpi1 [5812 kB]
Get:99 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:8.2.0-2+rpi1 [1432 B]
Get:100 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.8.0-1+b1 [113 kB]
Get:101 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.8.0-1+b1 [1550 kB]
Get:102 http://172.17.0.1/private buster-staging/main armhf libncurses-dev armhf 6.1+20181013-1 [278 kB]
Get:103 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1+20181013-1 [940 B]
Get:104 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-5 [110 kB]
Get:105 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-11+rpi1 [234 kB]
Get:106 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-11+rpi1 [227 kB]
Get:107 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-11+rpi1 [150 kB]
Get:108 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-11+rpi1 [565 kB]
Get:109 http://172.17.0.1/private buster-staging/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-1 [206 kB]
Get:110 http://172.17.0.1/private buster-staging/main armhf libpng-dev armhf 1.6.34-2+rpi1 [275 kB]
Get:111 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-9 [27.7 kB]
Get:112 http://172.17.0.1/private buster-staging/main armhf icu-devtools armhf 60.2-6 [166 kB]
Get:113 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-icu0 armhf 1.9.0-1+rpi1 [650 kB]
Get:114 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-gobject0 armhf 1.9.0-1+rpi1 [657 kB]
Get:115 http://172.17.0.1/private buster-staging/main armhf libgirepository-1.0-1 armhf 1.58.0-1 [78.2 kB]
Get:116 http://172.17.0.1/private buster-staging/main armhf gir1.2-glib-2.0 armhf 1.58.0-1 [143 kB]
Get:117 http://172.17.0.1/private buster-staging/main armhf gir1.2-harfbuzz-0.0 armhf 1.9.0-1+rpi1 [665 kB]
Get:118 http://172.17.0.1/private buster-staging/main armhf libglib2.0-data all 2.58.1-2 [1105 kB]
Get:119 http://172.17.0.1/private buster-staging/main armhf libglib2.0-bin armhf 2.58.1-2 [114 kB]
Get:120 http://172.17.0.1/private buster-staging/main armhf python3-lib2to3 all 3.7.1-1 [78.7 kB]
Get:121 http://172.17.0.1/private buster-staging/main armhf python3-distutils all 3.7.1-1 [144 kB]
Get:122 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev-bin armhf 2.58.1-2 [151 kB]
Get:123 http://172.17.0.1/private buster-staging/main armhf libglib2.0-dev armhf 2.58.1-2 [1237 kB]
Get:124 http://172.17.0.1/private buster-staging/main armhf libgraphite2-dev armhf 1.3.12-1 [22.6 kB]
Get:125 http://172.17.0.1/private buster-staging/main armhf libharfbuzz-dev armhf 1.9.0-1+rpi1 [944 kB]
Get:126 http://172.17.0.1/private buster-staging/main armhf libicu-le-hb-dev armhf 1.0.3+git161113-5 [28.3 kB]
Get:127 http://172.17.0.1/private buster-staging/main armhf libicu-dev armhf 60.2-6 [8643 kB]
Get:128 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:129 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:130 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.5.1-1 [4476 B]
Get:131 http://172.17.0.1/private buster-staging/main armhf libfile-which-perl all 1.22-1 [14.6 kB]
Get:132 http://172.17.0.1/private buster-staging/main armhf dh-r all 20181101 [34.0 kB]
Get:133 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.28.0-1 [644 kB]
Get:134 http://172.17.0.1/private buster-staging/main armhf r-bioc-biobase armhf 2.42.0-1 [2215 kB]
Get:135 http://172.17.0.1/private buster-staging/main armhf r-cran-formatr all 1.5-3 [149 kB]
Get:136 http://172.17.0.1/private buster-staging/main armhf r-cran-lambda.r all 1.2.3-2 [117 kB]
Get:137 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.options all 1.0.1-2 [19.8 kB]
Get:138 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.logger all 1.4.3-3 [102 kB]
Get:139 http://172.17.0.1/private buster-staging/main armhf r-cran-snow all 1:0.4.3-1 [108 kB]
Get:140 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocparallel armhf 1.16.0-1 [1056 kB]
Get:141 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.18.3-1+b1 [1799 kB]
Get:142 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.14.12-1 [2130 kB]
Get:143 http://172.17.0.1/private buster-staging/main armhf r-bioc-xvector armhf 0.20.0-2+b1 [592 kB]
Get:144 http://172.17.0.1/private buster-staging/main armhf r-bioc-biostrings armhf 2.48.0-2+b1 [14.1 MB]
Get:145 http://172.17.0.1/private buster-staging/main armhf r-cran-matrixstats armhf 0.54.0-1 [551 kB]
Get:146 http://172.17.0.1/private buster-staging/main armhf r-bioc-delayedarray all 0.6.6+dfsg-1 [1056 kB]
Get:147 http://172.17.0.1/private buster-staging/main armhf r-cran-bitops armhf 1.0-6-4 [23.9 kB]
Get:148 http://172.17.0.1/private buster-staging/main armhf r-cran-rcurl armhf 1.95-4.11-1 [711 kB]
Get:149 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodbdata all 1.2.0-1 [9196 kB]
Get:150 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodb all 1.18.0-1 [3694 kB]
Get:151 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicranges armhf 1.32.7-1 [1941 kB]
Get:152 http://172.17.0.1/private buster-staging/main armhf r-cran-lattice armhf 0.20-38-1 [1120 kB]
Get:153 http://172.17.0.1/private buster-staging/main armhf r-cran-matrix armhf 1.2-15-1 [3356 kB]
Get:154 http://172.17.0.1/private buster-staging/main armhf r-bioc-summarizedexperiment all 1.10.1+dfsg-1 [1882 kB]
Get:155 http://172.17.0.1/private buster-staging/main armhf r-bioc-rsamtools armhf 1.34.0-1 [3492 kB]
Get:156 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicalignments armhf 1.16.0-2+b1 [2089 kB]
Get:157 http://172.17.0.1/private buster-staging/main armhf r-cran-hwriter all 1.3.2-3 [162 kB]
Get:158 http://172.17.0.1/private buster-staging/main armhf r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB]
Get:159 http://172.17.0.1/private buster-staging/main armhf r-cran-latticeextra armhf 0.6-28-2+b2 [2182 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 155 MB in 22s (6957 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 17628 files and directories currently installed.)
Preparing to unpack .../libbsd0_0.9.1-1_armhf.deb ...
Unpacking libbsd0:armhf (0.9.1-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Preparing to unpack .../libubsan1_8.2.0-9+rpi1_armhf.deb ...
Unpacking libubsan1:armhf (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Preparing to unpack .../gcc-8-base_8.2.0-9+rpi1_armhf.deb ...
Unpacking gcc-8-base:armhf (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Setting up gcc-8-base:armhf (8.2.0-9+rpi1) ...
(Reading database ... 17753 files and directories currently installed.)
Preparing to unpack .../libgcc1_1%3a8.2.0-9+rpi1_armhf.deb ...
Unpacking libgcc1:armhf (1:8.2.0-9+rpi1) over (1:8.2.0-8+rpi1) ...
Setting up libgcc1:armhf (1:8.2.0-9+rpi1) ...
(Reading database ... 17753 files and directories currently installed.)
Preparing to unpack .../0-libgomp1_8.2.0-9+rpi1_armhf.deb ...
Unpacking libgomp1:armhf (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Preparing to unpack .../1-libatomic1_8.2.0-9+rpi1_armhf.deb ...
Unpacking libatomic1:armhf (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Preparing to unpack .../2-libasan5_8.2.0-9+rpi1_armhf.deb ...
Unpacking libasan5:armhf (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Preparing to unpack .../3-cpp-8_8.2.0-9+rpi1_armhf.deb ...
Unpacking cpp-8 (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Preparing to unpack .../4-libcc1-0_8.2.0-9+rpi1_armhf.deb ...
Unpacking libcc1-0:armhf (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Preparing to unpack .../5-g++-8_8.2.0-9+rpi1_armhf.deb ...
Unpacking g++-8 (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Preparing to unpack .../6-gcc-8_8.2.0-9+rpi1_armhf.deb ...
Unpacking gcc-8 (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Preparing to unpack .../7-libgcc-8-dev_8.2.0-9+rpi1_armhf.deb ...
Unpacking libgcc-8-dev:armhf (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Preparing to unpack .../8-libstdc++-8-dev_8.2.0-9+rpi1_armhf.deb ...
Unpacking libstdc++-8-dev:armhf (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Preparing to unpack .../9-libstdc++6_8.2.0-9+rpi1_armhf.deb ...
Unpacking libstdc++6:armhf (8.2.0-9+rpi1) over (8.2.0-8+rpi1) ...
Setting up libstdc++6:armhf (8.2.0-9+rpi1) ...
Selecting previously unselected package groff-base.
(Reading database ... 17753 files and directories currently installed.)
Preparing to unpack .../groff-base_1.22.3-10_armhf.deb ...
Unpacking groff-base (1.22.3-10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../libpipeline1_1.5.0-2_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.0-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../man-db_2.8.4-3_armhf.deb ...
Unpacking man-db (2.8.4-3) ...
Selecting previously unselected package libpython3.6-minimal:armhf.
Preparing to unpack .../libpython3.6-minimal_3.6.7-1_armhf.deb ...
Unpacking libpython3.6-minimal:armhf (3.6.7-1) ...
Selecting previously unselected package python3.6-minimal.
Preparing to unpack .../python3.6-minimal_3.6.7-1_armhf.deb ...
Unpacking python3.6-minimal (3.6.7-1) ...
Setting up libpython3.6-minimal:armhf (3.6.7-1) ...
Setting up python3.6-minimal (3.6.7-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 18477 files and directories currently installed.)
Preparing to unpack .../0-python3-minimal_3.6.7-1_armhf.deb ...
Unpacking python3-minimal (3.6.7-1) ...
Selecting previously unselected package mime-support.
Preparing to unpack .../1-mime-support_3.61_all.deb ...
Unpacking mime-support (3.61) ...
Selecting previously unselected package libmpdec2:armhf.
Preparing to unpack .../2-libmpdec2_2.4.2-2_armhf.deb ...
Unpacking libmpdec2:armhf (2.4.2-2) ...
Selecting previously unselected package libpython3.6-stdlib:armhf.
Preparing to unpack .../3-libpython3.6-stdlib_3.6.7-1_armhf.deb ...
Unpacking libpython3.6-stdlib:armhf (3.6.7-1) ...
Selecting previously unselected package python3.6.
Preparing to unpack .../4-python3.6_3.6.7-1_armhf.deb ...
Unpacking python3.6 (3.6.7-1) ...
Selecting previously unselected package libpython3-stdlib:armhf.
Preparing to unpack .../5-libpython3-stdlib_3.6.7-1_armhf.deb ...
Unpacking libpython3-stdlib:armhf (3.6.7-1) ...
Setting up python3-minimal (3.6.7-1) ...
Selecting previously unselected package python3.
(Reading database ... 18905 files and directories currently installed.)
Preparing to unpack .../000-python3_3.6.7-1_armhf.deb ...
Unpacking python3 (3.6.7-1) ...
Selecting previously unselected package gcc-7-base:armhf.
Preparing to unpack .../001-gcc-7-base_7.3.0-19_armhf.deb ...
Unpacking gcc-7-base:armhf (7.3.0-19) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../002-libmagic-mgc_1%3a5.34-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.34-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../003-libmagic1_1%3a5.34-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.34-2) ...
Selecting previously unselected package file.
Preparing to unpack .../004-file_1%3a5.34-2_armhf.deb ...
Unpacking file (1:5.34-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../005-gettext-base_0.19.8.1-8_armhf.deb ...
Unpacking gettext-base (0.19.8.1-8) ...
Selecting previously unselected package libswitch-perl.
Preparing to unpack .../006-libswitch-perl_2.17-2_all.deb ...
Unpacking libswitch-perl (2.17-2) ...
Selecting previously unselected package ucf.
Preparing to unpack .../007-ucf_3.0038_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0038) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../008-libsigsegv2_2.12-2_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-2) ...
Selecting previously unselected package m4.
Preparing to unpack .../009-m4_1.4.18-1_armhf.deb ...
Unpacking m4 (1.4.18-1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../010-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../011-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../012-automake_1%3a1.16.1-4_all.deb ...
Unpacking automake (1:1.16.1-4) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../013-autopoint_0.19.8.1-8_all.deb ...
Unpacking autopoint (0.19.8.1-8) ...
Preparing to unpack .../014-g++_4%3a8.2.0-2+rpi1_armhf.deb ...
Unpacking g++ (4:8.2.0-2+rpi1) over (4:8.1.0-1+rpi1) ...
Preparing to unpack .../015-gcc_4%3a8.2.0-2+rpi1_armhf.deb ...
Unpacking gcc (4:8.2.0-2+rpi1) over (4:8.1.0-1+rpi1) ...
Preparing to unpack .../016-cpp_4%3a8.2.0-2+rpi1_armhf.deb ...
Unpacking cpp (4:8.2.0-2+rpi1) over (4:8.1.0-1+rpi1) ...
Selecting previously unselected package dctrl-tools.
Preparing to unpack .../017-dctrl-tools_2.24-3_armhf.deb ...
Unpacking dctrl-tools (2.24-3) ...
Selecting previously unselected package libtool.
Preparing to unpack .../018-libtool_2.4.6-6_all.deb ...
Unpacking libtool (2.4.6-6) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../019-dh-autoreconf_19_all.deb ...
Unpacking dh-autoreconf (19) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../020-libarchive-zip-perl_1.64-1_all.deb ...
Unpacking libarchive-zip-perl (1.64-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../021-libfile-stripnondeterminism-perl_0.45.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.45.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../022-dh-strip-nondeterminism_0.45.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.45.0-1) ...
Selecting previously unselected package libelf1:armhf.
Preparing to unpack .../023-libelf1_0.170-0.5_armhf.deb ...
Unpacking libelf1:armhf (0.170-0.5) ...
Selecting previously unselected package dwz.
Preparing to unpack .../024-dwz_0.12-2_armhf.deb ...
Unpacking dwz (0.12-2) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../025-libglib2.0-0_2.58.1-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.58.1-2) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../026-libfreetype6_2.8.1-2_armhf.deb ...
Unpacking libfreetype6:armhf (2.8.1-2) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../027-libgraphite2-3_1.3.12-1_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.12-1) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../028-libharfbuzz0b_1.9.0-1+rpi1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (1.9.0-1+rpi1) ...
Selecting previously unselected package libicu-le-hb0:armhf.
Preparing to unpack .../029-libicu-le-hb0_1.0.3+git161113-5_armhf.deb ...
Unpacking libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Selecting previously unselected package libicu60:armhf.
Preparing to unpack .../030-libicu60_60.2-6_armhf.deb ...
Unpacking libicu60:armhf (60.2-6) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../031-libxml2_2.9.4+dfsg1-7_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-7) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../032-libcroco3_0.6.12-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../033-gettext_0.19.8.1-8_armhf.deb ...
Unpacking gettext (0.19.8.1-8) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../034-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../035-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../036-debhelper_11.5.3_all.deb ...
Unpacking debhelper (11.5.3) ...
Selecting previously unselected package zip.
Preparing to unpack .../037-zip_3.0-11_armhf.deb ...
Unpacking zip (3.0-11) ...
Selecting previously unselected package unzip.
Preparing to unpack .../038-unzip_6.0-21_armhf.deb ...
Unpacking unzip (6.0-21) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../039-libpaper1_1.1.24+nmu5_armhf.deb ...
Unpacking libpaper1:armhf (1.1.24+nmu5) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../040-libpaper-utils_1.1.24+nmu5_armhf.deb ...
Unpacking libpaper-utils (1.1.24+nmu5) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../041-xdg-utils_1.1.3-1_all.deb ...
Unpacking xdg-utils (1.1.3-1) ...
Selecting previously unselected package libgfortran5:armhf.
Preparing to unpack .../042-libgfortran5_8.2.0-9+rpi1_armhf.deb ...
Unpacking libgfortran5:armhf (8.2.0-9+rpi1) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../043-libblas3_3.8.0-1+b1_armhf.deb ...
Unpacking libblas3:armhf (3.8.0-1+b1) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../044-fonts-dejavu-core_2.37-1_all.deb ...
Unpacking fonts-dejavu-core (2.37-1) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../045-fontconfig-config_2.13.1-2_all.deb ...
Unpacking fontconfig-config (2.13.1-2) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../046-libfontconfig1_2.13.1-2_armhf.deb ...
Unpacking libfontconfig1:armhf (2.13.1-2) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../047-libpixman-1-0_0.34.0-2_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.34.0-2) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../048-libxau6_1%3a1.0.8-1+b2_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.8-1+b2) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../049-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../050-libxcb1_1.13.1-1_armhf.deb ...
Unpacking libxcb1:armhf (1.13.1-1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../051-libx11-data_2%3a1.6.7-1_all.deb ...
Unpacking libx11-data (2:1.6.7-1) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../052-libx11-6_2%3a1.6.7-1_armhf.deb ...
Unpacking libx11-6:armhf (2:1.6.7-1) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../053-libxcb-render0_1.13.1-1_armhf.deb ...
Unpacking libxcb-render0:armhf (1.13.1-1) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../054-libxcb-shm0_1.13.1-1_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.13.1-1) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../055-libxext6_2%3a1.3.3-1+b2_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1+b2) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../056-libxrender1_1%3a0.9.10-1_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.10-1) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../057-libcairo2_1.16.0-1_armhf.deb ...
Unpacking libcairo2:armhf (1.16.0-1) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../058-libnghttp2-14_1.34.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.34.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../059-libpsl5_0.20.2-2_armhf.deb ...
Unpacking libpsl5:armhf (0.20.2-2) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../060-librtmp1_2.4+20151223.gitfa8646d.1-2_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../061-libssh2-1_1.8.0-2_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-2) ...
Selecting previously unselected package libcurl4:armhf.
Preparing to unpack .../062-libcurl4_7.61.0-1_armhf.deb ...
Unpacking libcurl4:armhf (7.61.0-1) ...
Selecting previously unselected package libgfortran4:armhf.
Preparing to unpack .../063-libgfortran4_7.3.0-19_armhf.deb ...
Unpacking libgfortran4:armhf (7.3.0-19) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../064-x11-common_1%3a7.7+19_all.deb ...
Unpacking x11-common (1:7.7+19) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../065-libice6_2%3a1.0.9-2_armhf.deb ...
Unpacking libice6:armhf (2:1.0.9-2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../066-libjpeg62-turbo_1%3a1.5.2-2+b1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../067-liblapack3_3.8.0-1+b1_armhf.deb ...
Unpacking liblapack3:armhf (3.8.0-1+b1) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../068-fontconfig_2.13.1-2_armhf.deb ...
Unpacking fontconfig (2.13.1-2) ...
Selecting previously unselected package libfribidi0:armhf.
Preparing to unpack .../069-libfribidi0_1.0.5-3_armhf.deb ...
Unpacking libfribidi0:armhf (1.0.5-3) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../070-libthai-data_0.1.28-1_all.deb ...
Unpacking libthai-data (0.1.28-1) ...
Selecting previously unselected package libdatrie1:armhf.
Preparing to unpack .../071-libdatrie1_0.2.12-1_armhf.deb ...
Unpacking libdatrie1:armhf (0.2.12-1) ...
Selecting previously unselected package libthai0:armhf.
Preparing to unpack .../072-libthai0_0.1.28-1_armhf.deb ...
Unpacking libthai0:armhf (0.1.28-1) ...
Selecting previously unselected package libpango-1.0-0:armhf.
Preparing to unpack .../073-libpango-1.0-0_1.42.4-3_armhf.deb ...
Unpacking libpango-1.0-0:armhf (1.42.4-3) ...
Selecting previously unselected package libpangoft2-1.0-0:armhf.
Preparing to unpack .../074-libpangoft2-1.0-0_1.42.4-3_armhf.deb ...
Unpacking libpangoft2-1.0-0:armhf (1.42.4-3) ...
Selecting previously unselected package libpangocairo-1.0-0:armhf.
Preparing to unpack .../075-libpangocairo-1.0-0_1.42.4-3_armhf.deb ...
Unpacking libpangocairo-1.0-0:armhf (1.42.4-3) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../076-libsm6_2%3a1.2.2-1+b3_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.2-1+b3) ...
Selecting previously unselected package libtcl8.6:armhf.
Preparing to unpack .../077-libtcl8.6_8.6.8+dfsg-4_armhf.deb ...
Unpacking libtcl8.6:armhf (8.6.8+dfsg-4) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../078-libjbig0_2.1-3.1+b2_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1+b2) ...
Selecting previously unselected package libwebp6:armhf.
Preparing to unpack .../079-libwebp6_0.6.1-2_armhf.deb ...
Unpacking libwebp6:armhf (0.6.1-2) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../080-libtiff5_4.0.9+git181026-1_armhf.deb ...
Unpacking libtiff5:armhf (4.0.9+git181026-1) ...
Selecting previously unselected package libxft2:armhf.
Preparing to unpack .../081-libxft2_2.3.2-2_armhf.deb ...
Unpacking libxft2:armhf (2.3.2-2) ...
Selecting previously unselected package libxss1:armhf.
Preparing to unpack .../082-libxss1_1%3a1.2.3-1_armhf.deb ...
Unpacking libxss1:armhf (1:1.2.3-1) ...
Selecting previously unselected package libtk8.6:armhf.
Preparing to unpack .../083-libtk8.6_8.6.8-4_armhf.deb ...
Unpacking libtk8.6:armhf (8.6.8-4) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../084-libxt6_1%3a1.1.5-1_armhf.deb ...
Unpacking libxt6:armhf (1:1.1.5-1) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../085-r-base-core_3.5.1-1_armhf.deb ...
Unpacking r-base-core (3.5.1-1) ...
Selecting previously unselected package libgfortran-8-dev:armhf.
Preparing to unpack .../086-libgfortran-8-dev_8.2.0-9+rpi1_armhf.deb ...
Unpacking libgfortran-8-dev:armhf (8.2.0-9+rpi1) ...
Selecting previously unselected package gfortran-8.
Preparing to unpack .../087-gfortran-8_8.2.0-9+rpi1_armhf.deb ...
Unpacking gfortran-8 (8.2.0-9+rpi1) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../088-gfortran_4%3a8.2.0-2+rpi1_armhf.deb ...
Unpacking gfortran (4:8.2.0-2+rpi1) ...
Selecting previously unselected package libblas-dev:armhf.
Preparing to unpack .../089-libblas-dev_3.8.0-1+b1_armhf.deb ...
Unpacking libblas-dev:armhf (3.8.0-1+b1) ...
Selecting previously unselected package liblapack-dev:armhf.
Preparing to unpack .../090-liblapack-dev_3.8.0-1+b1_armhf.deb ...
Unpacking liblapack-dev:armhf (3.8.0-1+b1) ...
Selecting previously unselected package libncurses-dev:armhf.
Preparing to unpack .../091-libncurses-dev_6.1+20181013-1_armhf.deb ...
Unpacking libncurses-dev:armhf (6.1+20181013-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
Preparing to unpack .../092-libncurses5-dev_6.1+20181013-1_armhf.deb ...
Unpacking libncurses5-dev:armhf (6.1+20181013-1) ...
Selecting previously unselected package libreadline-dev:armhf.
Preparing to unpack .../093-libreadline-dev_7.0-5_armhf.deb ...
Unpacking libreadline-dev:armhf (7.0-5) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
Preparing to unpack .../094-libjpeg62-turbo-dev_1%3a1.5.2-2+b1_armhf.deb ...
Unpacking libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Selecting previously unselected package libjpeg-dev.
Preparing to unpack .../095-libjpeg-dev_1%3a1.5.2-2_all.deb ...
Unpacking libjpeg-dev (1:1.5.2-2) ...
Selecting previously unselected package libpcre16-3:armhf.
Preparing to unpack .../096-libpcre16-3_2%3a8.39-11+rpi1_armhf.deb ...
Unpacking libpcre16-3:armhf (2:8.39-11+rpi1) ...
Selecting previously unselected package libpcre32-3:armhf.
Preparing to unpack .../097-libpcre32-3_2%3a8.39-11+rpi1_armhf.deb ...
Unpacking libpcre32-3:armhf (2:8.39-11+rpi1) ...
Selecting previously unselected package libpcrecpp0v5:armhf.
Preparing to unpack .../098-libpcrecpp0v5_2%3a8.39-11+rpi1_armhf.deb ...
Unpacking libpcrecpp0v5:armhf (2:8.39-11+rpi1) ...
Selecting previously unselected package libpcre3-dev:armhf.
Preparing to unpack .../099-libpcre3-dev_2%3a8.39-11+rpi1_armhf.deb ...
Unpacking libpcre3-dev:armhf (2:8.39-11+rpi1) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../100-zlib1g-dev_1%3a1.2.11.dfsg-1_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Selecting previously unselected package libpng-dev:armhf.
Preparing to unpack .../101-libpng-dev_1.6.34-2+rpi1_armhf.deb ...
Unpacking libpng-dev:armhf (1.6.34-2+rpi1) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../102-libbz2-dev_1.0.6-9_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.6-9) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../103-liblzma-dev_5.2.2-1.3_armhf.deb ...
Unpacking liblzma-dev:armhf (5.2.2-1.3) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../104-icu-devtools_60.2-6_armhf.deb ...
Unpacking icu-devtools (60.2-6) ...
Selecting previously unselected package libharfbuzz-icu0:armhf.
Preparing to unpack .../105-libharfbuzz-icu0_1.9.0-1+rpi1_armhf.deb ...
Unpacking libharfbuzz-icu0:armhf (1.9.0-1+rpi1) ...
Selecting previously unselected package libharfbuzz-gobject0:armhf.
Preparing to unpack .../106-libharfbuzz-gobject0_1.9.0-1+rpi1_armhf.deb ...
Unpacking libharfbuzz-gobject0:armhf (1.9.0-1+rpi1) ...
Selecting previously unselected package libgirepository-1.0-1:armhf.
Preparing to unpack .../107-libgirepository-1.0-1_1.58.0-1_armhf.deb ...
Unpacking libgirepository-1.0-1:armhf (1.58.0-1) ...
Selecting previously unselected package gir1.2-glib-2.0:armhf.
Preparing to unpack .../108-gir1.2-glib-2.0_1.58.0-1_armhf.deb ...
Unpacking gir1.2-glib-2.0:armhf (1.58.0-1) ...
Selecting previously unselected package gir1.2-harfbuzz-0.0:armhf.
Preparing to unpack .../109-gir1.2-harfbuzz-0.0_1.9.0-1+rpi1_armhf.deb ...
Unpacking gir1.2-harfbuzz-0.0:armhf (1.9.0-1+rpi1) ...
Selecting previously unselected package libglib2.0-data.
Preparing to unpack .../110-libglib2.0-data_2.58.1-2_all.deb ...
Unpacking libglib2.0-data (2.58.1-2) ...
Selecting previously unselected package libglib2.0-bin.
Preparing to unpack .../111-libglib2.0-bin_2.58.1-2_armhf.deb ...
Unpacking libglib2.0-bin (2.58.1-2) ...
Selecting previously unselected package python3-lib2to3.
Preparing to unpack .../112-python3-lib2to3_3.7.1-1_all.deb ...
Unpacking python3-lib2to3 (3.7.1-1) ...
Selecting previously unselected package python3-distutils.
Preparing to unpack .../113-python3-distutils_3.7.1-1_all.deb ...
Unpacking python3-distutils (3.7.1-1) ...
Selecting previously unselected package libglib2.0-dev-bin.
Preparing to unpack .../114-libglib2.0-dev-bin_2.58.1-2_armhf.deb ...
Unpacking libglib2.0-dev-bin (2.58.1-2) ...
Selecting previously unselected package pkg-config.
Preparing to unpack .../115-pkg-config_0.29-4_armhf.deb ...
Unpacking pkg-config (0.29-4) ...
Selecting previously unselected package libglib2.0-dev:armhf.
Preparing to unpack .../116-libglib2.0-dev_2.58.1-2_armhf.deb ...
Unpacking libglib2.0-dev:armhf (2.58.1-2) ...
Selecting previously unselected package libgraphite2-dev:armhf.
Preparing to unpack .../117-libgraphite2-dev_1.3.12-1_armhf.deb ...
Unpacking libgraphite2-dev:armhf (1.3.12-1) ...
Selecting previously unselected package libharfbuzz-dev:armhf.
Preparing to unpack .../118-libharfbuzz-dev_1.9.0-1+rpi1_armhf.deb ...
Unpacking libharfbuzz-dev:armhf (1.9.0-1+rpi1) ...
Selecting previously unselected package libicu-le-hb-dev:armhf.
Preparing to unpack .../119-libicu-le-hb-dev_1.0.3+git161113-5_armhf.deb ...
Unpacking libicu-le-hb-dev:armhf (1.0.3+git161113-5) ...
Selecting previously unselected package libicu-dev.
Preparing to unpack .../120-libicu-dev_60.2-6_armhf.deb ...
Unpacking libicu-dev (60.2-6) ...
Selecting previously unselected package libxmuu1:armhf.
Preparing to unpack .../121-libxmuu1_2%3a1.1.2-2_armhf.deb ...
Unpacking libxmuu1:armhf (2:1.1.2-2) ...
Selecting previously unselected package xauth.
Preparing to unpack .../122-xauth_1%3a1.0.10-1_armhf.deb ...
Unpacking xauth (1:1.0.10-1) ...
Selecting previously unselected package r-base-dev.
Preparing to unpack .../123-r-base-dev_3.5.1-1_all.deb ...
Unpacking r-base-dev (3.5.1-1) ...
Selecting previously unselected package libfile-which-perl.
Preparing to unpack .../124-libfile-which-perl_1.22-1_all.deb ...
Unpacking libfile-which-perl (1.22-1) ...
Selecting previously unselected package dh-r.
Preparing to unpack .../125-dh-r_20181101_all.deb ...
Unpacking dh-r (20181101) ...
Selecting previously unselected package r-bioc-biocgenerics.
Preparing to unpack .../126-r-bioc-biocgenerics_0.28.0-1_all.deb ...
Unpacking r-bioc-biocgenerics (0.28.0-1) ...
Selecting previously unselected package r-bioc-biobase.
Preparing to unpack .../127-r-bioc-biobase_2.42.0-1_armhf.deb ...
Unpacking r-bioc-biobase (2.42.0-1) ...
Selecting previously unselected package r-cran-formatr.
Preparing to unpack .../128-r-cran-formatr_1.5-3_all.deb ...
Unpacking r-cran-formatr (1.5-3) ...
Selecting previously unselected package r-cran-lambda.r.
Preparing to unpack .../129-r-cran-lambda.r_1.2.3-2_all.deb ...
Unpacking r-cran-lambda.r (1.2.3-2) ...
Selecting previously unselected package r-cran-futile.options.
Preparing to unpack .../130-r-cran-futile.options_1.0.1-2_all.deb ...
Unpacking r-cran-futile.options (1.0.1-2) ...
Selecting previously unselected package r-cran-futile.logger.
Preparing to unpack .../131-r-cran-futile.logger_1.4.3-3_all.deb ...
Unpacking r-cran-futile.logger (1.4.3-3) ...
Selecting previously unselected package r-cran-snow.
Preparing to unpack .../132-r-cran-snow_1%3a0.4.3-1_all.deb ...
Unpacking r-cran-snow (1:0.4.3-1) ...
Selecting previously unselected package r-bioc-biocparallel.
Preparing to unpack .../133-r-bioc-biocparallel_1.16.0-1_armhf.deb ...
Unpacking r-bioc-biocparallel (1.16.0-1) ...
Selecting previously unselected package r-bioc-s4vectors.
Preparing to unpack .../134-r-bioc-s4vectors_0.18.3-1+b1_armhf.deb ...
Unpacking r-bioc-s4vectors (0.18.3-1+b1) ...
Selecting previously unselected package r-bioc-iranges.
Preparing to unpack .../135-r-bioc-iranges_2.14.12-1_armhf.deb ...
Unpacking r-bioc-iranges (2.14.12-1) ...
Selecting previously unselected package r-bioc-xvector.
Preparing to unpack .../136-r-bioc-xvector_0.20.0-2+b1_armhf.deb ...
Unpacking r-bioc-xvector (0.20.0-2+b1) ...
Selecting previously unselected package r-bioc-biostrings.
Preparing to unpack .../137-r-bioc-biostrings_2.48.0-2+b1_armhf.deb ...
Unpacking r-bioc-biostrings (2.48.0-2+b1) ...
Selecting previously unselected package r-cran-matrixstats.
Preparing to unpack .../138-r-cran-matrixstats_0.54.0-1_armhf.deb ...
Unpacking r-cran-matrixstats (0.54.0-1) ...
Selecting previously unselected package r-bioc-delayedarray.
Preparing to unpack .../139-r-bioc-delayedarray_0.6.6+dfsg-1_all.deb ...
Unpacking r-bioc-delayedarray (0.6.6+dfsg-1) ...
Selecting previously unselected package r-cran-bitops.
Preparing to unpack .../140-r-cran-bitops_1.0-6-4_armhf.deb ...
Unpacking r-cran-bitops (1.0-6-4) ...
Selecting previously unselected package r-cran-rcurl.
Preparing to unpack .../141-r-cran-rcurl_1.95-4.11-1_armhf.deb ...
Unpacking r-cran-rcurl (1.95-4.11-1) ...
Selecting previously unselected package r-bioc-genomeinfodbdata.
Preparing to unpack .../142-r-bioc-genomeinfodbdata_1.2.0-1_all.deb ...
Unpacking r-bioc-genomeinfodbdata (1.2.0-1) ...
Selecting previously unselected package r-bioc-genomeinfodb.
Preparing to unpack .../143-r-bioc-genomeinfodb_1.18.0-1_all.deb ...
Unpacking r-bioc-genomeinfodb (1.18.0-1) ...
Selecting previously unselected package r-bioc-genomicranges.
Preparing to unpack .../144-r-bioc-genomicranges_1.32.7-1_armhf.deb ...
Unpacking r-bioc-genomicranges (1.32.7-1) ...
Selecting previously unselected package r-cran-lattice.
Preparing to unpack .../145-r-cran-lattice_0.20-38-1_armhf.deb ...
Unpacking r-cran-lattice (0.20-38-1) ...
Selecting previously unselected package r-cran-matrix.
Preparing to unpack .../146-r-cran-matrix_1.2-15-1_armhf.deb ...
Unpacking r-cran-matrix (1.2-15-1) ...
Selecting previously unselected package r-bioc-summarizedexperiment.
Preparing to unpack .../147-r-bioc-summarizedexperiment_1.10.1+dfsg-1_all.deb ...
Unpacking r-bioc-summarizedexperiment (1.10.1+dfsg-1) ...
Selecting previously unselected package r-bioc-rsamtools.
Preparing to unpack .../148-r-bioc-rsamtools_1.34.0-1_armhf.deb ...
Unpacking r-bioc-rsamtools (1.34.0-1) ...
Selecting previously unselected package r-bioc-genomicalignments.
Preparing to unpack .../149-r-bioc-genomicalignments_1.16.0-2+b1_armhf.deb ...
Unpacking r-bioc-genomicalignments (1.16.0-2+b1) ...
Selecting previously unselected package r-cran-hwriter.
Preparing to unpack .../150-r-cran-hwriter_1.3.2-3_all.deb ...
Unpacking r-cran-hwriter (1.3.2-3) ...
Selecting previously unselected package r-cran-rcolorbrewer.
Preparing to unpack .../151-r-cran-rcolorbrewer_1.1-2-2_all.deb ...
Unpacking r-cran-rcolorbrewer (1.1-2-2) ...
Selecting previously unselected package r-cran-latticeextra.
Preparing to unpack .../152-r-cran-latticeextra_0.6-28-2+b2_armhf.deb ...
Unpacking r-cran-latticeextra (0.6-28-2+b2) ...
Selecting previously unselected package sbuild-build-depends-r-bioc-shortread-dummy.
Preparing to unpack .../153-sbuild-build-depends-r-bioc-shortread-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-r-bioc-shortread-dummy (0.invalid.0) ...
Setting up cpp-8 (8.2.0-9+rpi1) ...
Setting up libgomp1:armhf (8.2.0-9+rpi1) ...
Setting up libatomic1:armhf (8.2.0-9+rpi1) ...
Setting up cpp (4:8.2.0-2+rpi1) ...
Setting up libcc1-0:armhf (8.2.0-9+rpi1) ...
Setting up libbz2-dev:armhf (1.0.6-9) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libarchive-zip-perl (1.64-1) ...
Setting up libnghttp2-14:armhf (1.34.0-1) ...
Setting up mime-support (3.61) ...
Installing new version of config file /etc/mime.types ...
Setting up libfile-which-perl (1.22-1) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libsigsegv2:armhf (2.12-2) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libpsl5:armhf (0.20.2-2) ...
Setting up libelf1:armhf (0.170-0.5) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.58.1-2) ...
No schema files found: removed existing output file.
Setting up unzip (6.0-21) ...
Setting up dctrl-tools (2.24-3) ...
Setting up libdatrie1:armhf (0.2.12-1) ...
Setting up gettext-base (0.19.8.1-8) ...
Setting up libpipeline1:armhf (1.5.0-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2) ...
Setting up libswitch-perl (2.17-2) ...
Setting up m4 (1.4.18-1) ...
Setting up libbsd0:armhf (0.9.1-1) ...
Setting up ucf (3.0038) ...
Setting up libgirepository-1.0-1:armhf (1.58.0-1) ...
Setting up zip (3.0-11) ...
Setting up libfreetype6:armhf (2.8.1-2) ...
Setting up libmagic-mgc (1:5.34-2) ...
Setting up libmagic1:armhf (1:5.34-2) ...
Setting up libgraphite2-3:armhf (1.3.12-1) ...
Setting up gcc-7-base:armhf (7.3.0-19) ...
Setting up pkg-config (0.29-4) ...
Setting up libpixman-1-0:armhf (0.34.0-2) ...
Setting up gir1.2-glib-2.0:armhf (1.58.0-1) ...
Setting up libssh2-1:armhf (1.8.0-2) ...
Setting up libglib2.0-data (2.58.1-2) ...
Processing triggers for libc-bin (2.27-6+rpi1) ...
Setting up dwz (0.12-2) ...
Setting up autotools-dev (20180224.1) ...
Processing triggers for systemd (239-10+rpi1) ...
Setting up libfribidi0:armhf (1.0.5-3) ...
Setting up libpcrecpp0v5:armhf (2:8.39-11+rpi1) ...
Setting up libpcre32-3:armhf (2:8.39-11+rpi1) ...
Setting up libpcre16-3:armhf (2:8.39-11+rpi1) ...
Setting up libtcl8.6:armhf (8.6.8+dfsg-4) ...
Setting up libthai-data (0.1.28-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Setting up liblzma-dev:armhf (5.2.2-1.3) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up xdg-utils (1.1.3-1) ...
Setting up libncurses-dev:armhf (6.1+20181013-1) ...
Setting up libglib2.0-bin (2.58.1-2) ...
Setting up libasan5:armhf (8.2.0-9+rpi1) ...
Setting up libgfortran5:armhf (8.2.0-9+rpi1) ...
Setting up libgraphite2-dev:armhf (1.3.12-1) ...
Setting up libx11-data (2:1.6.7-1) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up autopoint (0.19.8.1-8) ...
Setting up libmpdec2:armhf (2.4.2-2) ...
Setting up libwebp6:armhf (0.6.1-2) ...
Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-1) ...
Setting up libfile-stripnondeterminism-perl (0.45.0-1) ...
Setting up libubsan1:armhf (8.2.0-9+rpi1) ...
Setting up libpaper1:armhf (1.1.24+nmu5) ...
Creating config file /etc/papersize with new version
Setting up libpython3.6-stdlib:armhf (3.6.7-1) ...
Setting up libpaper-utils (1.1.24+nmu5) ...
Setting up libpcre3-dev:armhf (2:8.39-11+rpi1) ...
Setting up fontconfig-config (2.13.1-2) ...
Installing new version of config file /etc/fonts/fonts.conf ...
Setting up python3.6 (3.6.7-1) ...
Setting up libgfortran4:armhf (7.3.0-19) ...
Setting up libcurl4:armhf (7.61.0-1) ...
Setting up libharfbuzz0b:armhf (1.9.0-1+rpi1) ...
Setting up libtiff5:armhf (4.0.9+git181026-1) ...
Setting up autoconf (2.69-11) ...
Setting up libthai0:armhf (0.1.28-1) ...
Setting up file (1:5.34-2) ...
Setting up libncurses5-dev:armhf (6.1+20181013-1) ...
Setting up libblas3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up automake (1:1.16.1-4) ...
update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libreadline-dev:armhf (7.0-5) ...
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up man-db (2.8.4-3) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libgcc-8-dev:armhf (8.2.0-9+rpi1) ...
Setting up libpng-dev:armhf (1.6.34-2+rpi1) ...
Setting up libgfortran-8-dev:armhf (8.2.0-9+rpi1) ...
Setting up libxcb1:armhf (1.13.1-1) ...
Setting up libharfbuzz-gobject0:armhf (1.9.0-1+rpi1) ...
Setting up libpython3-stdlib:armhf (3.6.7-1) ...
Setting up libfontconfig1:armhf (2.13.1-2) ...
Setting up libstdc++-8-dev:armhf (8.2.0-9+rpi1) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libxcb-render0:armhf (1.13.1-1) ...
Setting up python3 (3.6.7-1) ...
Setting up libblas-dev:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up liblapack3:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libx11-6:armhf (2:1.6.7-1) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up gcc-8 (8.2.0-9+rpi1) ...
Setting up g++-8 (8.2.0-9+rpi1) ...
Setting up gir1.2-harfbuzz-0.0:armhf (1.9.0-1+rpi1) ...
Setting up libxcb-shm0:armhf (1.13.1-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libxft2:armhf (2.3.2-2) ...
Setting up python3-lib2to3 (3.7.1-1) ...
Setting up python3-distutils (3.7.1-1) ...
Setting up fontconfig (2.13.1-2) ...
Regenerating fonts cache... done.
Setting up liblapack-dev:armhf (3.8.0-1+b1) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-6) ...
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libglib2.0-dev-bin (2.58.1-2) ...
Setting up gfortran-8 (8.2.0-9+rpi1) ...
Setting up libxss1:armhf (1:1.2.3-1) ...
Setting up gcc (4:8.2.0-2+rpi1) ...
Setting up libglib2.0-dev:armhf (2.58.1-2) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libpango-1.0-0:armhf (1.42.4-3) ...
Setting up g++ (4:8.2.0-2+rpi1) ...
Setting up gfortran (4:8.2.0-2+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libcairo2:armhf (1.16.0-1) ...
Setting up libtk8.6:armhf (8.6.8-4) ...
Setting up libpangoft2-1.0-0:armhf (1.42.4-3) ...
Setting up libpangocairo-1.0-0:armhf (1.42.4-3) ...
Setting up dh-autoreconf (19) ...
Setting up libicu-le-hb0:armhf (1.0.3+git161113-5) ...
Setting up dh-strip-nondeterminism (0.45.0-1) ...
Setting up libicu60:armhf (60.2-6) ...
Setting up libharfbuzz-icu0:armhf (1.9.0-1+rpi1) ...
Setting up libicu-le-hb-dev:armhf (1.0.3+git161113-5) ...
Setting up r-base-core (3.5.1-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-bioc-biocgenerics (0.28.0-1) ...
Setting up libxml2:armhf (2.9.4+dfsg1-7) ...
Setting up r-bioc-biobase (2.42.0-1) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up r-cran-rcolorbrewer (1.1-2-2) ...
Setting up r-cran-bitops (1.0-6-4) ...
Setting up r-cran-formatr (1.5-3) ...
Setting up r-cran-futile.options (1.0.1-2) ...
Setting up icu-devtools (60.2-6) ...
Setting up r-cran-rcurl (1.95-4.11-1) ...
Setting up r-cran-hwriter (1.3.2-3) ...
Setting up r-cran-lambda.r (1.2.3-2) ...
Setting up r-cran-matrixstats (0.54.0-1) ...
Setting up r-cran-snow (1:0.4.3-1) ...
Setting up r-bioc-s4vectors (0.18.3-1+b1) ...
Setting up gettext (0.19.8.1-8) ...
Setting up r-cran-lattice (0.20-38-1) ...
Setting up r-cran-latticeextra (0.6-28-2+b2) ...
Setting up r-bioc-genomeinfodbdata (1.2.0-1) ...
Setting up libicu-dev (60.2-6) ...
Setting up r-base-dev (3.5.1-1) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up r-cran-futile.logger (1.4.3-3) ...
Setting up libharfbuzz-dev:armhf (1.9.0-1+rpi1) ...
Setting up r-bioc-iranges (2.14.12-1) ...
Setting up r-bioc-biocparallel (1.16.0-1) ...
Setting up po-debconf (1.0.20) ...
Setting up r-cran-matrix (1.2-15-1) ...
Setting up r-bioc-delayedarray (0.6.6+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.18.0-1) ...
Setting up r-bioc-xvector (0.20.0-2+b1) ...
Setting up r-bioc-biostrings (2.48.0-2+b1) ...
Setting up r-bioc-genomicranges (1.32.7-1) ...
Setting up debhelper (11.5.3) ...
Setting up dh-r (20181101) ...
Setting up r-bioc-summarizedexperiment (1.10.1+dfsg-1) ...
Setting up r-bioc-rsamtools (1.34.0-1) ...
Setting up r-bioc-genomicalignments (1.16.0-2+b1) ...
Setting up sbuild-build-depends-r-bioc-shortread-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-6+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-124-generic armhf (armv8l)
Toolchain package versions: binutils_2.31.1-7+rpi1 dpkg-dev_1.19.2 g++-8_8.2.0-9+rpi1 gcc-8_8.2.0-9+rpi1 libc6-dev_2.27-6+rpi1 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 linux-libc-dev_4.16.16-2+rpi1
Package versions: adduser_3.118 apt_1.7.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-8 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.45 bash_4.4.18-3.1 binutils_2.31.1-7+rpi1 binutils-arm-linux-gnueabihf_2.31.1-7+rpi1 binutils-common_2.31.1-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.32.1-0.1 build-essential_12.5 bzip2_1.0.6-9 ca-certificates_20170717 coreutils_8.30-1 cpio_2.12+dfsg-6 cpp_4:8.2.0-2+rpi1 cpp-8_8.2.0-9+rpi1 dash_0.5.10.2-1 dbus_1.12.10-1 dbus-user-session_1.12.10-1 dctrl-tools_2.24-3 debconf_1.5.69 debhelper_11.5.3 debianutils_4.8.6 dh-autoreconf_19 dh-r_20181101 dh-strip-nondeterminism_0.45.0-1 diffutils_1:3.6-1 dirmngr_2.2.10-3+rpi1 dmsetup_2:1.02.145-4.1+b4 dpkg_1.19.2 dpkg-dev_1.19.2 dwz_0.12-2 e2fslibs_1.44.4-2 e2fsprogs_1.44.4-2 e2fsprogs-l10n_1.44.4-2 fakeroot_1.23-1 fdisk_2.32.1-0.1 file_1:5.34-2 findutils_4.6.0+git+20181018-1 fontconfig_2.13.1-2 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:8.2.0-2+rpi1 g++-8_8.2.0-9+rpi1 gcc_4:8.2.0-2+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1+b19 gcc-5-base_5.5.0-8 gcc-7-base_7.3.0-19 gcc-8_8.2.0-9+rpi1 gcc-8-base_8.2.0-9+rpi1 gettext_0.19.8.1-8 gettext-base_0.19.8.1-8 gfortran_4:8.2.0-2+rpi1 gfortran-8_8.2.0-9+rpi1 gir1.2-glib-2.0_1.58.0-1 gir1.2-harfbuzz-0.0_1.9.0-1+rpi1 gnupg_2.2.10-3+rpi1 gnupg-agent_2.2.10-3+rpi1 gnupg-l10n_2.2.10-3+rpi1 gnupg-utils_2.2.10-3+rpi1 gpg_2.2.10-3+rpi1 gpg-agent_2.2.10-3+rpi1 gpg-wks-client_2.2.10-3+rpi1 gpg-wks-server_2.2.10-3+rpi1 gpgconf_2.2.10-3+rpi1 gpgsm_2.2.10-3+rpi1 gpgv_2.2.10-3+rpi1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.9-2.1 hostname_3.21 icu-devtools_60.2-6 inetutils-ping_2:1.9.4-5 init-system-helpers_1.55 initramfs-tools_0.132 initramfs-tools-core_0.132 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-14+rpi1 kmod_25-1 krb5-locales_1.16.1-1 libacl1_2.2.52-3 libapparmor1_2.13.1-3 libapt-pkg5.0_1.7.0 libarchive-zip-perl_1.64-1 libargon2-1_0~20171227-0.1 libasan5_8.2.0-9+rpi1 libassuan0_2.5.1-2 libatomic1_8.2.0-9+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-7+rpi1 libblas-dev_3.8.0-1+b1 libblas3_3.8.0-1+b1 libblkid1_2.32.1-0.1 libbsd0_0.9.1-1 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.27-6+rpi1 libc-dev-bin_2.27-6+rpi1 libc6_2.27-6+rpi1 libc6-dev_2.27-6+rpi1 libcairo2_1.16.0-1 libcap-ng0_0.7.9-1 libcap2_1:2.25-1.2 libcc1-0_8.2.0-9+rpi1 libcom-err2_1.44.4-2 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.5-1 libcryptsetup4_2:1.7.5-1 libcurl4_7.61.0-1 libdatrie1_0.2.12-1 libdb5.3_5.3.28+dfsg1-0.2 libdbus-1-3_1.12.10-1 libdebconfclient0_0.245 libdevmapper1.02.1_2:1.02.145-4.1+b4 libdpkg-perl_1.19.2 libdrm-common_2.4.95-1+rpi1 libdrm2_2.4.95-1+rpi1 libelf1_0.170-0.5 libexpat1_2.2.6-1 libext2fs2_1.44.4-2 libfakeroot_1.23-1 libfdisk1_2.32.1-0.1 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.45.0-1 libfile-which-perl_1.22-1 libfontconfig1_2.13.1-2 libfreetype6_2.8.1-2 libfribidi0_1.0.5-3 libgcc-8-dev_8.2.0-9+rpi1 libgcc1_1:8.2.0-9+rpi1 libgcrypt20_1.8.4-3 libgdbm-compat4_1.18.1-1 libgdbm3_1.8.3-14 libgdbm6_1.18.1-1 libgfortran-8-dev_8.2.0-9+rpi1 libgfortran4_7.3.0-19 libgfortran5_8.2.0-9+rpi1 libgirepository-1.0-1_1.58.0-1 libglib2.0-0_2.58.1-2 libglib2.0-bin_2.58.1-2 libglib2.0-data_2.58.1-2 libglib2.0-dev_2.58.1-2 libglib2.0-dev-bin_2.58.1-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.19-1+b1 libgomp1_8.2.0-9+rpi1 libgpg-error-l10n_1.32-3 libgpg-error0_1.32-3 libgraphite2-3_1.3.12-1 libgraphite2-dev_1.3.12-1 libgssapi-krb5-2_1.16.1-1 libharfbuzz-dev_1.9.0-1+rpi1 libharfbuzz-gobject0_1.9.0-1+rpi1 libharfbuzz-icu0_1.9.0-1+rpi1 libharfbuzz0b_1.9.0-1+rpi1 libhogweed4_3.4-1 libice6_2:1.0.9-2 libicu-dev_60.2-6 libicu-le-hb-dev_1.0.3+git161113-5 libicu-le-hb0_1.0.3+git161113-5 libicu60_60.2-6 libidn11_1.33-2.2 libidn2-0_2.0.5-1 libip4tc0_1.8.1-2 libisl19_0.20-2 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16.1-1 libkeyutils1_1.5.9-9.3 libklibc_2.0.4-14+rpi1 libkmod2_25-1 libkrb5-3_1.16.1-1 libkrb5support0_1.16.1-1 libksba8_1.3.5-2 liblapack-dev_3.8.0-1+b1 liblapack3_3.8.0-1+b1 libldap-2.4-2_2.4.46+dfsg-5+rpi1 libldap-common_2.4.46+dfsg-5+rpi1 liblz4-1_1.8.2-1+rpi1 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.34-2 libmagic1_1:5.34-2 libmount1_2.32.1-0.1 libmpc3_1.1.0-1 libmpdec2_2.4.2-2 libmpfr6_4.0.1-1 libncurses-dev_6.1+20181013-1 libncurses5_6.1+20181013-1 libncurses5-dev_6.1+20181013-1 libncurses6_6.1+20181013-1 libncursesw5_6.1+20181013-1 libncursesw6_6.1+20181013-1 libnettle6_3.4-1 libnghttp2-14_1.34.0-1 libnpth0_1.6-1 libnss-systemd_239-10+rpi1 libp11-kit0_0.23.14-2 libpam-modules_1.1.8-3.8 libpam-modules-bin_1.1.8-3.8 libpam-runtime_1.1.8-3.8 libpam-systemd_239-10+rpi1 libpam0g_1.1.8-3.8 libpango-1.0-0_1.42.4-3 libpangocairo-1.0-0_1.42.4-3 libpangoft2-1.0-0_1.42.4-3 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre16-3_2:8.39-11+rpi1 libpcre3_2:8.39-11+rpi1 libpcre3-dev_2:8.39-11+rpi1 libpcre32-3_2:8.39-11+rpi1 libpcrecpp0v5_2:8.39-11+rpi1 libperl5.24_5.24.1-7 libperl5.26_5.26.2-7+b1 libperl5.28_5.28.0-3 libpipeline1_1.5.0-2 libpixman-1-0_0.34.0-2 libplymouth4_0.9.3-3 libpng-dev_1.6.34-2+rpi1 libpng16-16_1.6.34-2+rpi1 libprocps7_2:3.3.15-2 libpsl5_0.20.2-2 libpython3-stdlib_3.6.7-1 libpython3.6-minimal_3.6.7-1 libpython3.6-stdlib_3.6.7-1 libreadline-dev_7.0-5 libreadline7_7.0-5 librtmp1_2.4+20151223.gitfa8646d.1-2 libsasl2-2_2.1.27~rc8-1 libsasl2-modules_2.1.27~rc8-1 libsasl2-modules-db_2.1.27~rc8-1 libseccomp2_2.3.3-3 libselinux1_2.8-1 libsemanage-common_2.8-1 libsemanage1_2.8-1 libsepol1_2.8-1 libsigsegv2_2.12-2 libsm6_2:1.2.2-1+b3 libsmartcols1_2.32.1-0.1 libsqlite3-0_3.25.2-1 libss2_1.44.4-2 libssh2-1_1.8.0-2 libssl1.1_1.1.1-2 libstdc++-8-dev_8.2.0-9+rpi1 libstdc++6_8.2.0-9+rpi1 libswitch-perl_2.17-2 libsystemd0_239-10+rpi1 libtasn1-6_4.13-3 libtcl8.6_8.6.8+dfsg-4 libthai-data_0.1.28-1 libthai0_0.1.28-1 libtiff5_4.0.9+git181026-1 libtinfo5_6.1+20181013-1 libtinfo6_6.1+20181013-1 libtk8.6_8.6.8-4 libtool_2.4.6-6 libubsan1_8.2.0-9+rpi1 libudev1_239-10+rpi1 libunistring2_0.9.10-1 libustr-1.0-1_1.0.4-6 libuuid1_2.32.1-0.1 libwebp6_0.6.1-2 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13.1-1 libxcb-shm0_1.13.1-1 libxcb1_1.13.1-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-2 libxml2_2.9.4+dfsg1-7 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.3-1 libxt6_1:1.1.5-1 libzstd1_1.3.5+dfsg-1+rpi1 linux-base_4.5 linux-libc-dev_4.16.16-2+rpi1 login_1:4.5-1.1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.2.1-1.2 makedev_2.3.1-94 man-db_2.8.4-3 mawk_1.3.3-17 mime-support_3.61 mount_2.32.1-0.1 multiarch-support_2.27-6+rpi1 nano_3.1-1 ncurses-base_6.1+20181013-1 ncurses-bin_6.1+20181013-1 netbase_5.4 openssl_1.1.1-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.0-3 perl-base_5.28.0-3 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.2-7 perl-modules-5.28_5.28.0-3 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-3 po-debconf_1.0.20 procps_2:3.3.15-2 python3_3.6.7-1 python3-distutils_3.7.1-1 python3-lib2to3_3.7.1-1 python3-minimal_3.6.7-1 python3.6_3.6.7-1 python3.6-minimal_3.6.7-1 r-base-core_3.5.1-1 r-base-dev_3.5.1-1 r-bioc-biobase_2.42.0-1 r-bioc-biocgenerics_0.28.0-1 r-bioc-biocparallel_1.16.0-1 r-bioc-biostrings_2.48.0-2+b1 r-bioc-delayedarray_0.6.6+dfsg-1 r-bioc-genomeinfodb_1.18.0-1 r-bioc-genomeinfodbdata_1.2.0-1 r-bioc-genomicalignments_1.16.0-2+b1 r-bioc-genomicranges_1.32.7-1 r-bioc-iranges_2.14.12-1 r-bioc-rsamtools_1.34.0-1 r-bioc-s4vectors_0.18.3-1+b1 r-bioc-summarizedexperiment_1.10.1+dfsg-1 r-bioc-xvector_0.20.0-2+b1 r-cran-bitops_1.0-6-4 r-cran-formatr_1.5-3 r-cran-futile.logger_1.4.3-3 r-cran-futile.options_1.0.1-2 r-cran-hwriter_1.3.2-3 r-cran-lambda.r_1.2.3-2 r-cran-lattice_0.20-38-1 r-cran-latticeextra_0.6-28-2+b2 r-cran-matrix_1.2-15-1 r-cran-matrixstats_0.54.0-1 r-cran-rcolorbrewer_1.1-2-2 r-cran-rcurl_1.95-4.11-1 r-cran-snow_1:0.4.3-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-5 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-shortread-dummy_0.invalid.0 sed_4.5-2 sensible-utils_0.0.12 systemd_239-10+rpi1 systemd-sysv_239-10+rpi1 sysvinit-utils_2.88dsf-59.11 tar_1.30+dfsg-2 tzdata_2018g-1 ucf_3.0038 udev_239-10+rpi1 unzip_6.0-21 util-linux_2.32.1-0.1 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.3-1 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Nov 12 07:07:58 2018 UTC
gpgv: using RSA key 9A3C07BD06DE2F416E813A5D612EF1613E050F54
gpgv: issuer "daissi@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-shortread_1.40.0-1.dsc
dpkg-source: info: extracting r-bioc-shortread in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-shortread_1.40.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-shortread_1.40.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying use_debian_packaged_zlib.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-613a377d-8ec6-4b1f-96c5-d49a75a8dd64
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-shortread
dpkg-buildpackage: info: source version 1.40.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R packages needed for DEP8: runit
I: R Package: ShortRead Version: 1.40.0
I: Building using R version 3.5.1-1
I: R API version: r-api-3.5
I: Using built-time from d/changelog: Mon, 12 Nov 2018 08:02:46 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-shortread/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-shortread/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 12 Nov 2018 08:02:46 +0100'"
* installing *source* package 'ShortRead' ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for gzeof in -lz... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of unsigned long... 4
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_ShortRead.c -o R_init_ShortRead.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c alphabet.c -o alphabet.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_bowtie.c -o io_bowtie.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_soap.c -o io_soap.o
g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readBfaToc.cc -o readBfaToc.o
readBfaToc.cc: In function 'SEXPREC* readBfaToc(SEXP)':
readBfaToc.cc:35:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
(void) fread( seq_name, sizeof(char), name_len, fp );
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readBfaToc.cc:36:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
(void) fread( &seq_ori_len, sizeof(int), 1, fp );
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readBfaToc.cc:37:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result]
(void) fread( &seq_len, sizeof(int), 1, fp );
~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
g++ -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_maq_map.cc -o read_maq_map.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sampler.c -o sampler.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-73GQCG/r-base-3.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xsnap.c -o xsnap.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o ShortRead.so Biostrings_stubs.o IRanges_stubs.o R_init_ShortRead.o S4Vectors_stubs.o XVector_stubs.o alphabet.o io.o io_bowtie.o io_soap.o readBfaToc.o read_maq_map.o sampler.o trim.o util.o xsnap.o -lz -fopenmp -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-shortread/usr/lib/R/site-library/ShortRead/libs
** R
** inst
** byte-compile and prepare package for lazy loading
code for methods in class "ShortReadFile" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "FastqFileReader" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "QAData" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Snapshot" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "SpTrellis" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "FastqSampler" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "FastqStreamer" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ShortRead)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.23.3)
I: Using r-bioc-biocparallel for Depends:BiocParallel
I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.47.6)
I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.31.2)
I: Using r-bioc-genomicalignments for Depends:GenomicAlignments (>= 1.15.6)
I: Using r-cran-runit for Recommends:runit
W: Cannot find a debian package for Suggests:BiocStyle
I: Using r-bioc-biomart for Suggests:biomaRt
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
W: Cannot find a debian package for Suggests:yeastNagalakshmi
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.17.25)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.13.12)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.15.2)
I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.31.8)
I: Using r-cran-hwriter for Imports:hwriter
I: Using r-cran-lattice for Imports:lattice
I: Using r-cran-latticeextra for Imports:latticeExtra
Create lintian-override for package-contains-documentation-outside-usr-share-doc
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemd -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_gconf: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal.
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-shortread/usr/lib/R/site-library/ShortRead/libs/ShortRead.so was not linked against libgomp.so.1 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-shortread-dbgsym' in '../r-bioc-shortread-dbgsym_1.40.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-shortread' in '../r-bioc-shortread_1.40.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-shortread_1.40.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-11-14T05:10:58Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-shortread_1.40.0-1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Mon, 12 Nov 2018 08:02:46 +0100
Source: r-bioc-shortread
Binary: r-bioc-shortread
Architecture: armhf
Version: 1.40.0-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Dylan Aïssi <daissi@debian.org>
Description:
r-bioc-shortread - GNU R classes and methods for high-throughput short-read sequenci
Changes:
r-bioc-shortread (1.40.0-1) unstable; urgency=medium
.
* Team upload.
* New upstream version
* Standards-Version: 4.2.1
Checksums-Sha1:
8c67a8d76bbfe603c85c05b1e4e6d6f13f9368e0 161456 r-bioc-shortread-dbgsym_1.40.0-1_armhf.deb
0523025cc4df70a6bb497ff9a5cf1c9e855c5eb8 9294 r-bioc-shortread_1.40.0-1_armhf.buildinfo
5de8fb57cc571b4816eea11ffcf72ab748870ecb 5008416 r-bioc-shortread_1.40.0-1_armhf.deb
Checksums-Sha256:
ed714a52bb6c952e015b6cfe9d657945c8ab150dde2a28f9f25fbe77451e898e 161456 r-bioc-shortread-dbgsym_1.40.0-1_armhf.deb
ca00eabeb74766c10154e3633ca64f1c1e8e1f13e4c721d091691884bced8ed1 9294 r-bioc-shortread_1.40.0-1_armhf.buildinfo
4ddd59c74d5c133ee72fbc26f04d843b6bc8b04edff06145720bd45d003f0b06 5008416 r-bioc-shortread_1.40.0-1_armhf.deb
Files:
c18690d989205068de38f4bed8adc4e0 161456 debug optional r-bioc-shortread-dbgsym_1.40.0-1_armhf.deb
a2ad346d3518f2ecc9d5f77401d4386b 9294 gnu-r optional r-bioc-shortread_1.40.0-1_armhf.buildinfo
2faf52ce1c04f438ffaf0e51ed3020a8 5008416 gnu-r optional r-bioc-shortread_1.40.0-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-shortread-dbgsym_1.40.0-1_armhf.deb
------------------------------------------
new Debian package, version 2.0.
size 161456 bytes: control archive=540 bytes.
402 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-shortread-dbgsym
Source: r-bioc-shortread
Version: 1.40.0-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 195
Depends: r-bioc-shortread (= 1.40.0-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-shortread
Build-Ids: b6049b4ba1f197f271a5ae5a0920b752f6769830
drwxr-xr-x root/root 0 2018-11-12 07:02 ./
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/debug/.build-id/b6/
-rw-r--r-- root/root 189348 2018-11-12 07:02 ./usr/lib/debug/.build-id/b6/049b4ba1f197f271a5ae5a0920b752f6769830.debug
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-11-12 07:02 ./usr/share/doc/r-bioc-shortread-dbgsym -> r-bioc-shortread
r-bioc-shortread_1.40.0-1_armhf.deb
-----------------------------------
new Debian package, version 2.0.
size 5008416 bytes: control archive=4164 bytes.
1268 bytes, 18 lines control
10890 bytes, 114 lines md5sums
Package: r-bioc-shortread
Version: 1.40.0-1
Architecture: armhf
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Installed-Size: 7320
Depends: r-base-core (>= 3.5.1-1), r-api-3.5, r-bioc-biocgenerics (>= 0.23.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.47.6), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biobase, r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-genomicranges (>= 1.31.8), r-cran-hwriter, r-cran-lattice, r-cran-latticeextra, libc6 (>= 2.7), libgcc1 (>= 1:3.5), libgomp1 (>= 4.2.1), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Recommends: r-cran-runit
Suggests: r-bioc-biomart, r-bioc-genomicfeatures
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/ShortRead/
Description: GNU R classes and methods for high-throughput short-read sequencing data
This BioConductor module is a package for input, quality assessment,
manipulation and output of high-throughput sequencing data. ShortRead is
provided in the R and Bioconductor environments, allowing ready access
to additional facilities for advanced statistical analysis, data
transformation, visualization and integration with diverse genomic
resources.
drwxr-xr-x root/root 0 2018-11-12 07:02 ./
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/
-rw-r--r-- root/root 1158 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/CITATION
-rw-r--r-- root/root 1493 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/DESCRIPTION
-rw-r--r-- root/root 5917 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/INDEX
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/
-rw-r--r-- root/root 5599 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/Rd.rds
-rw-r--r-- root/root 113 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/features.rds
-rw-r--r-- root/root 5756 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/hsearch.rds
-rw-r--r-- root/root 4164 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/links.rds
-rw-r--r-- root/root 847 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/nsInfo.rds
-rw-r--r-- root/root 1482 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/package.rds
-rw-r--r-- root/root 262 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/Meta/vignette.rds
-rw-r--r-- root/root 1147 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/NAMESPACE
-rw-r--r-- root/root 12433 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/NEWS
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/R/
-rw-r--r-- root/root 1056 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/R/ShortRead
-rw-r--r-- root/root 2211256 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/R/ShortRead.rdb
-rw-r--r-- root/root 12082 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/R/ShortRead.rdx
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/doc/
-rw-r--r-- root/root 5961 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/doc/Overview.R
-rw-r--r-- root/root 15627 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/doc/Overview.Rnw
-rw-r--r-- root/root 175760 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/doc/Overview.pdf
-rw-r--r-- root/root 1355 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/doc/index.html
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/
-rw-r--r-- root/root 31740 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_1_sequence.txt
-rw-r--r-- root/root 121368 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_2_export.txt
-rw-r--r-- root/root 90912 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_5_0001_realign.txt
-rw-r--r-- root/root 184320 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_prb.txt
-rw-r--r-- root/root 12452 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_seq.txt
-rw-r--r-- root/root 21534 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_1_0001_qseq.txt
-rw-r--r-- root/root 261216 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_int.txt
-rw-r--r-- root/root 261028 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_nse.txt
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/
-rw-r--r-- root/root 1408740 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ERR127302_1_subset.fastq.gz
-rw-r--r-- root/root 1402841 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ERR127302_2_subset.fastq.gz
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/bowtie/
-rw-r--r-- root/root 117004 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/bowtie/s_1_aligned_bowtie.txt
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/maq/
-rw-r--r-- root/root 131501 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/maq/out.aln.1.txt
-rw-r--r-- root/root 133413 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/extdata/maq/out.aln.2.txt
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/
-rw-r--r-- root/root 20812 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/AnIndex
-rw-r--r-- root/root 302218 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/ShortRead.rdb
-rw-r--r-- root/root 1519 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/ShortRead.rdx
-rw-r--r-- root/root 4233 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/aliases.rds
-rw-r--r-- root/root 643 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/help/paths.rds
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/html/
-rw-r--r-- root/root 66173 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/html/00Index.html
-rw-r--r-- root/root 1335 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/html/R.css
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/libs/
-rw-r--r-- root/root 108924 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/libs/ShortRead.so
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/script/
-rw-r--r-- root/root 308 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/script/qa-test.R
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/
-rw-r--r-- root/root 671 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/0000-Header.html
-rw-r--r-- root/root 578 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/1000-Overview.html
-rw-r--r-- root/root 140 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/1100-Overview-SolexaRealign.html
-rw-r--r-- root/root 1177 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/2000-RunSummary.html
-rw-r--r-- root/root 1998 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/3000-ReadDistribution.html
-rw-r--r-- root/root 1209 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/4000-CycleSpecific.html
-rw-r--r-- root/root 2439 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/5000-PerTile.html
-rw-r--r-- root/root 342 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/6000-Alignment.html
-rw-r--r-- root/root 257 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/7000-MultipleAlignment.html
-rw-r--r-- root/root 249 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/8000-DepthOfCoverage.html
-rw-r--r-- root/root 520 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/9000-AdapterContamination.html
-rw-r--r-- root/root 108 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/9999-Footer.html
-rw-r--r-- root/root 575 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QA.css
-rw-r--r-- root/root 402 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAAdapterContamination.html
-rw-r--r-- root/root 146 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAFiltered.html
-rw-r--r-- root/root 90 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAFlagged.html
-rw-r--r-- root/root 108 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAFooter.html
-rw-r--r-- root/root 155 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAFrequentSequence.html
-rw-r--r-- root/root 670 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAHeader.html
-rw-r--r-- root/root 336 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QANucleotideByCycle.html
-rw-r--r-- root/root 207 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QANucleotideUse.html
-rw-r--r-- root/root 654 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAQualityByCycle.html
-rw-r--r-- root/root 216 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAQualityUse.html
-rw-r--r-- root/root 279 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QAReadQuality.html
-rw-r--r-- root/root 1276 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QASequenceUse.html
-rw-r--r-- root/root 202 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/QASources.html
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/image/
-rw-r--r-- root/root 7692 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/image/bioclogo-small.gif
-rw-r--r-- root/root 7073 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/template/qa_solexa.Rnw
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/
-rw-r--r-- root/root 19136 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/PE_export.txt.gz
-rw-r--r-- root/root 475 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_int_head.txt.p
-rw-r--r-- root/root 475 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_nse_head.txt.p
-rw-r--r-- root/root 80 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_0001_pos_head.txt
-rw-r--r-- root/root 79211 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_results_head.txt
-rw-r--r-- root/root 250 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_illegal_nucleotide.txt
-rw-r--r-- root/root 240 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_read_mismatch.txt
-rw-r--r-- root/root 242 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.8_lines_read_quality_mismatch.txt
-rw-r--r-- root/root 275 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.9_lines.txt
-rw-r--r-- root/root 31740 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_1_sequence.txt
-rw-r--r-- root/root 1408 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_0001_realign_3col_head.txt
-rw-r--r-- root/root 6609 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_0001_realign_head.txt
-rw-r--r-- root/root 1242 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_export_run_as_factor.txt
-rw-r--r-- root/root 945 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/s_2_export_toIUPAC.txt
-rw-r--r-- root/root 150 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/sanger.fastq
-rw-r--r-- root/root 2543 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/soap.txt
-rw-r--r-- root/root 174 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/cases/solexa.fastq
-rw-r--r-- root/root 11481 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_AlignedRead.R
-rw-r--r-- root/root 521 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_AllClasses.R
-rw-r--r-- root/root 758 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_FastqFile.R
-rw-r--r-- root/root 1194 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_Intensity.R
-rw-r--r-- root/root 1661 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRError.R
-rw-r--r-- root/root 7356 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRFilter.R
-rw-r--r-- root/root 3126 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRFilterResult.R
-rw-r--r-- root/root 568 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRList.R
-rw-r--r-- root/root 459 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SRVector.R
-rw-r--r-- root/root 1150 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_ShortRead.R
-rw-r--r-- root/root 8698 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_ShortReadQ.R
-rw-r--r-- root/root 3244 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_SolexaIntensity.R
-rw-r--r-- root/root 1659 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_append.R
-rw-r--r-- root/root 2108 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_coverage.R
-rw-r--r-- root/root 1152 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_filterFastq.R
-rw-r--r-- root/root 4921 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_functions.R
-rw-r--r-- root/root 1195 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_qa.R
-rw-r--r-- root/root 1140 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_readPrb.R
-rw-r--r-- root/root 1346 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_readQseq.R
-rw-r--r-- root/root 2714 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_readXStringColumns.R
-rw-r--r-- root/root 1054 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_renew.R
-rw-r--r-- root/root 1783 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_trimEnds.R
-rw-r--r-- root/root 2519 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_trimTails.R
-rw-r--r-- root/root 1186 2018-11-12 07:02 ./usr/lib/R/site-library/ShortRead/unitTests/test_writeFastq.R
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/doc/r-bioc-shortread/
-rw-r--r-- root/root 373 2018-11-12 07:02 ./usr/share/doc/r-bioc-shortread/README.test
-rw-r--r-- root/root 942 2018-11-12 07:02 ./usr/share/doc/r-bioc-shortread/changelog.Debian.gz
-rw-r--r-- root/root 6310 2018-11-12 07:02 ./usr/share/doc/r-bioc-shortread/copyright
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/lintian/
drwxr-xr-x root/root 0 2018-11-12 07:02 ./usr/share/lintian/overrides/
-rw-r--r-- root/root 155 2018-11-12 07:02 ./usr/share/lintian/overrides/r-bioc-shortread
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 21896
Build-Time: 124
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 672
Job: r-bioc-shortread_1.40.0-1
Machine Architecture: armhf
Package: r-bioc-shortread
Package-Time: 813
Source-Version: 1.40.0-1
Space: 21896
Status: successful
Version: 1.40.0-1
--------------------------------------------------------------------------------
Finished at 2018-11-14T05:10:58Z
Build needed 00:13:33, 21896k disk space