r-bioc-shortread →
1.32.0-1 →
armhf → 2016-11-29 10:27:09
sbuild (Debian sbuild) 0.71.0 (24 Aug 2016) on bm-wb-01
+==============================================================================+
| r-bioc-shortread 1.32.0-1 (armhf) Tue, 29 Nov 2016 10:07:24 +0000 |
+==============================================================================+
Package: r-bioc-shortread
Version: 1.32.0-1
Source Version: 1.32.0-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/run/schroot/mount/stretch-staging-armhf-sbuild-97cdd135-7a0f-46fb-aebb-6f15028624b0' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private stretch-staging/main Sources [9541 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf Packages [11.5 MB]
Fetched 21.0 MB in 23s (904 kB/s)
Reading package lists...
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-shortread' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
Need to get 5153 kB of source archives.
Get:1 http://172.17.0.1/private stretch-staging/main r-bioc-shortread 1.32.0-1 (dsc) [2229 B]
Get:2 http://172.17.0.1/private stretch-staging/main r-bioc-shortread 1.32.0-1 (tar) [5145 kB]
Get:3 http://172.17.0.1/private stretch-staging/main r-bioc-shortread 1.32.0-1 (diff) [5180 B]
Fetched 5153 kB in 0s (8146 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-mmVxIi/r-bioc-shortread-1.32.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-mmVxIi' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-rHN5PB/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-rHN5PB/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-rHN5PB/gpg/trustdb.gpg: trustdb created
gpg: key 35506D9A48F77B2E: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 35506D9A48F77B2E: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 35506D9A48F77B2E: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Packages [433 B]
Fetched 2109 B in 0s (3079 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-rHN5PB/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user 'root' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n libfuse2 libsasl2-modules libssl1.0.2 manpages
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 18 not upgraded.
Need to get 776 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [776 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 776 B in 0s (0 B/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 13143 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 9), dh-r, r-base-dev, r-cran-latticeextra, r-bioc-biobase (>= 2.26.0), r-bioc-genomicalignments (>= 1.8.0), r-cran-hwriter
Filtered Build-Depends: debhelper (>= 9), dh-r, r-base-dev, r-cran-latticeextra, r-bioc-biobase (>= 2.26.0), r-bioc-genomicalignments (>= 1.8.0), r-cran-hwriter
dpkg-deb: building package 'sbuild-build-depends-r-bioc-shortread-dummy' in '/<<BUILDDIR>>/resolver-rHN5PB/apt_archive/sbuild-build-depends-r-bioc-shortread-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-shortread-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Release.gpg [370 B]
Ign:3 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Release.gpg
Get:4 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Sources [561 B]
Get:5 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Packages [640 B]
Fetched 2534 B in 0s (3944 B/s)
Reading package lists...
W: copy:///<<BUILDDIR>>/resolver-rHN5PB/apt_archive/./Release.gpg: The key(s) in the keyring /etc/apt/trusted.gpg.d/sbuild-build-depends-archive.gpg are ignored as the file is not readable by user 'root' executing apt-key.
W: GPG error: copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ Release: The following signatures couldn't be verified because the public key is not available: NO_PUBKEY 35506D9A48F77B2E
Reading package lists...
Install r-bioc-shortread build dependencies (apt-based resolver)
----------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
fuse2fs gnupg-l10n libfuse2 libsasl2-modules manpages
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cdbs
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3
libcurl3 libdatrie1 libexpat1 libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgfortran-6-dev libgfortran3 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu57
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses5-dev libnghttp2-14 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
libpng16-16 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev
libtk8.6 libtool libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl po-debconf r-base-core r-base-dev
r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicranges
r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment
r-bioc-xvector r-cran-bitops r-cran-futile.logger r-cran-futile.options
r-cran-hwriter r-cran-lambda.r r-cran-lattice r-cran-latticeextra
r-cran-matrix r-cran-rcolorbrewer r-cran-snow ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation devscripts debtags dh-make gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-6-doc libgfortran3-dbg
libcoarrays-dev groff liblapack-doc-man liblapack-doc krb5-doc krb5-user
icu-doc liblzma-doc ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc
gcj-jdk less www-browser libmail-box-perl ess r-doc-info | r-doc-pdf
r-mathlib r-base-html texlive-base texlive-latex-base
texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
r-cran-foreach r-cran-batchjobs r-cran-bbmisc r-cran-doparallel r-cran-rmpi
r-bioc-shortread r-cran-codetools r-cran-runit r-cran-knitr r-bioc-bsgenome
r-bioc-genomicfeatures r-bioc-graph r-cran-data.table r-bioc-annotate
r-bioc-annotationdbi r-cran-digest r-cran-jsonlite r-cran-testthat
r-cran-rsprng r-cran-rlecuyer gvfs-bin
Recommended packages:
curl | wget | lynx-cur bzip2-doc libglib2.0-data shared-mime-info
xdg-user-dirs krb5-locales libpng-tools libltdl-dev xml-core
libmail-sendmail-perl r-recommended r-doc-html r-bioc-shortread
r-cran-digest libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
x11-utils x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils ca-certificates cdbs
dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism file
fontconfig fontconfig-config fonts-dejavu-core gettext gettext-base gfortran
gfortran-6 groff-base icu-devtools intltool-debian libarchive-zip-perl
libblas-common libblas-dev libblas3 libbsd0 libbz2-dev libcairo2 libcroco3
libcurl3 libdatrie1 libexpat1 libfile-stripnondeterminism-perl
libfontconfig1 libfreetype6 libgfortran-6-dev libgfortran3 libglib2.0-0
libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libice6 libicu-dev libicu57
libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3
libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3 liblzma-dev
libmagic-mgc libmagic1 libncurses5-dev libnghttp2-14 libpango-1.0-0
libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
libpcre3-dev libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev
libpng16-16 libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl1.1
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev
libtk8.6 libtool libunistring0 libx11-6 libx11-data libxau6 libxcb-render0
libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
libxss1 libxt6 m4 man-db openssl po-debconf r-base-core r-base-dev
r-bioc-biobase r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
r-bioc-genomeinfodb r-bioc-genomicalignments r-bioc-genomicranges
r-bioc-iranges r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment
r-bioc-xvector r-cran-bitops r-cran-futile.logger r-cran-futile.options
r-cran-hwriter r-cran-lambda.r r-cran-lattice r-cran-latticeextra
r-cran-matrix r-cran-rcolorbrewer r-cran-snow
sbuild-build-depends-r-bioc-shortread-dummy ucf unzip x11-common xauth
xdg-utils zip zlib1g-dev
0 upgraded, 139 newly installed, 0 to remove and 18 not upgraded.
Need to get 127 MB of archives.
After this operation, 299 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-rHN5PB/apt_archive ./ sbuild-build-depends-r-bioc-shortread-dummy 0.invalid.0 [842 B]
Get:2 http://172.17.0.1/private stretch-staging/main armhf groff-base armhf 1.22.3-8 [1087 kB]
Get:3 http://172.17.0.1/private stretch-staging/main armhf libbsd0 armhf 0.8.3-1 [89.0 kB]
Get:4 http://172.17.0.1/private stretch-staging/main armhf bsdmainutils armhf 9.0.12 [178 kB]
Get:5 http://172.17.0.1/private stretch-staging/main armhf libpipeline1 armhf 1.4.1-2 [23.7 kB]
Get:6 http://172.17.0.1/private stretch-staging/main armhf man-db armhf 2.7.5-2 [971 kB]
Get:7 http://172.17.0.1/private stretch-staging/main armhf libexpat1 armhf 2.2.0-1 [61.7 kB]
Get:8 http://172.17.0.1/private stretch-staging/main armhf libpng16-16 armhf 1.6.26-2 [263 kB]
Get:9 http://172.17.0.1/private stretch-staging/main armhf libfreetype6 armhf 2.6.3-3+b1 [385 kB]
Get:10 http://172.17.0.1/private stretch-staging/main armhf ucf all 3.0036 [70.2 kB]
Get:11 http://172.17.0.1/private stretch-staging/main armhf fonts-dejavu-core all 2.37-1 [1068 kB]
Get:12 http://172.17.0.1/private stretch-staging/main armhf fontconfig-config all 2.11.0-6.7 [271 kB]
Get:13 http://172.17.0.1/private stretch-staging/main armhf libfontconfig1 armhf 2.11.0-6.7 [313 kB]
Get:14 http://172.17.0.1/private stretch-staging/main armhf fontconfig armhf 2.11.0-6.7 [402 kB]
Get:15 http://172.17.0.1/private stretch-staging/main armhf libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:16 http://172.17.0.1/private stretch-staging/main armhf libpcrecpp0v5 armhf 2:8.39-2 [149 kB]
Get:17 http://172.17.0.1/private stretch-staging/main armhf libxau6 armhf 1:1.0.8-1 [19.9 kB]
Get:18 http://172.17.0.1/private stretch-staging/main armhf libxdmcp6 armhf 1:1.1.2-1.1 [24.9 kB]
Get:19 http://172.17.0.1/private stretch-staging/main armhf libxcb1 armhf 1.12-1 [129 kB]
Get:20 http://172.17.0.1/private stretch-staging/main armhf libx11-data all 2:1.6.3-1 [128 kB]
Get:21 http://172.17.0.1/private stretch-staging/main armhf libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:22 http://172.17.0.1/private stretch-staging/main armhf libxext6 armhf 2:1.3.3-1 [48.1 kB]
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Get:24 http://172.17.0.1/private stretch-staging/main armhf libxft2 armhf 2.3.2-1 [48.3 kB]
Get:25 http://172.17.0.1/private stretch-staging/main armhf x11-common all 1:7.7+18 [251 kB]
Get:26 http://172.17.0.1/private stretch-staging/main armhf libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:27 http://172.17.0.1/private stretch-staging/main armhf libssl1.1 armhf 1.1.0c-2 [1101 kB]
Get:28 http://172.17.0.1/private stretch-staging/main armhf libmagic-mgc armhf 1:5.29-1 [219 kB]
Get:29 http://172.17.0.1/private stretch-staging/main armhf libmagic1 armhf 1:5.29-1 [104 kB]
Get:30 http://172.17.0.1/private stretch-staging/main armhf file armhf 1:5.29-1 [63.3 kB]
Get:31 http://172.17.0.1/private stretch-staging/main armhf gettext-base armhf 0.19.8.1-1 [117 kB]
Get:32 http://172.17.0.1/private stretch-staging/main armhf libkeyutils1 armhf 1.5.9-9 [11.9 kB]
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Get:34 http://172.17.0.1/private stretch-staging/main armhf libk5crypto3 armhf 1.15~beta1-1 [114 kB]
Get:35 http://172.17.0.1/private stretch-staging/main armhf libkrb5-3 armhf 1.15~beta1-1 [263 kB]
Get:36 http://172.17.0.1/private stretch-staging/main armhf libgssapi-krb5-2 armhf 1.15~beta1-1 [131 kB]
Get:37 http://172.17.0.1/private stretch-staging/main armhf libicu57 armhf 57.1-4 [7407 kB]
Get:38 http://172.17.0.1/private stretch-staging/main armhf libxml2 armhf 2.9.4+dfsg1-2.1 [804 kB]
Get:39 http://172.17.0.1/private stretch-staging/main armhf libsigsegv2 armhf 2.10-5 [28.4 kB]
Get:40 http://172.17.0.1/private stretch-staging/main armhf m4 armhf 1.4.17-5 [239 kB]
Get:41 http://172.17.0.1/private stretch-staging/main armhf autoconf all 2.69-10 [338 kB]
Get:42 http://172.17.0.1/private stretch-staging/main armhf autotools-dev all 20161112.1 [73.4 kB]
Get:43 http://172.17.0.1/private stretch-staging/main armhf automake all 1:1.15-5 [733 kB]
Get:44 http://172.17.0.1/private stretch-staging/main armhf autopoint all 0.19.8.1-1 [433 kB]
Get:45 http://172.17.0.1/private stretch-staging/main armhf openssl armhf 1.1.0c-2 [703 kB]
Get:46 http://172.17.0.1/private stretch-staging/main armhf ca-certificates all 20161102 [203 kB]
Get:47 http://172.17.0.1/private stretch-staging/main armhf cdbs all 0.4.150 [82.6 kB]
Get:48 http://172.17.0.1/private stretch-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:49 http://172.17.0.1/private stretch-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:50 http://172.17.0.1/private stretch-staging/main armhf dh-autoreconf all 12 [15.8 kB]
Get:51 http://172.17.0.1/private stretch-staging/main armhf libarchive-zip-perl all 1.59-1 [95.5 kB]
Get:52 http://172.17.0.1/private stretch-staging/main armhf libfile-stripnondeterminism-perl all 0.028-1 [14.6 kB]
Get:53 http://172.17.0.1/private stretch-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:54 http://172.17.0.1/private stretch-staging/main armhf dh-strip-nondeterminism all 0.028-1 [9020 B]
Get:55 http://172.17.0.1/private stretch-staging/main armhf libglib2.0-0 armhf 2.50.2-1 [2527 kB]
Get:56 http://172.17.0.1/private stretch-staging/main armhf libcroco3 armhf 0.6.11-2 [131 kB]
Get:57 http://172.17.0.1/private stretch-staging/main armhf libunistring0 armhf 0.9.6+really0.9.3-0.1 [252 kB]
Get:58 http://172.17.0.1/private stretch-staging/main armhf gettext armhf 0.19.8.1-1 [1433 kB]
Get:59 http://172.17.0.1/private stretch-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:60 http://172.17.0.1/private stretch-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:61 http://172.17.0.1/private stretch-staging/main armhf debhelper all 10.2.2 [826 kB]
Get:62 http://172.17.0.1/private stretch-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:63 http://172.17.0.1/private stretch-staging/main armhf unzip armhf 6.0-20 [142 kB]
Get:64 http://172.17.0.1/private stretch-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:65 http://172.17.0.1/private stretch-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:66 http://172.17.0.1/private stretch-staging/main armhf xdg-utils all 1.1.1-1 [71.1 kB]
Get:67 http://172.17.0.1/private stretch-staging/main armhf libgfortran3 armhf 6.2.0-13+rpi1 [166 kB]
Get:68 http://172.17.0.1/private stretch-staging/main armhf libblas-common armhf 3.6.1-2 [13.9 kB]
Get:69 http://172.17.0.1/private stretch-staging/main armhf libblas3 armhf 3.6.1-2 [112 kB]
Get:70 http://172.17.0.1/private stretch-staging/main armhf libpixman-1-0 armhf 0.34.0-1 [451 kB]
Get:71 http://172.17.0.1/private stretch-staging/main armhf libxcb-render0 armhf 1.12-1 [104 kB]
Get:72 http://172.17.0.1/private stretch-staging/main armhf libxcb-shm0 armhf 1.12-1 [95.9 kB]
Get:73 http://172.17.0.1/private stretch-staging/main armhf libcairo2 armhf 1.14.6-1.1 [686 kB]
Get:74 http://172.17.0.1/private stretch-staging/main armhf libnghttp2-14 armhf 1.16.0-1 [72.5 kB]
Get:75 http://172.17.0.1/private stretch-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-1 [54.2 kB]
Get:76 http://172.17.0.1/private stretch-staging/main armhf libssh2-1 armhf 1.7.0-1 [125 kB]
Get:77 http://172.17.0.1/private stretch-staging/main armhf libcurl3 armhf 7.50.1-1 [251 kB]
Get:78 http://172.17.0.1/private stretch-staging/main armhf libice6 armhf 2:1.0.9-1+b1 [51.9 kB]
Get:79 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo armhf 1:1.5.1-2 [109 kB]
Get:80 http://172.17.0.1/private stretch-staging/main armhf liblapack3 armhf 3.6.1-2 [1392 kB]
Get:81 http://172.17.0.1/private stretch-staging/main armhf libthai-data all 0.1.25-2 [165 kB]
Get:82 http://172.17.0.1/private stretch-staging/main armhf libdatrie1 armhf 0.2.10-4 [32.8 kB]
Get:83 http://172.17.0.1/private stretch-staging/main armhf libthai0 armhf 0.1.25-2 [48.7 kB]
Get:84 http://172.17.0.1/private stretch-staging/main armhf libpango-1.0-0 armhf 1.40.3-3 [300 kB]
Get:85 http://172.17.0.1/private stretch-staging/main armhf libgraphite2-3 armhf 1.3.9-2 [62.9 kB]
Get:86 http://172.17.0.1/private stretch-staging/main armhf libharfbuzz0b armhf 1.2.7-1+b1 [589 kB]
Get:87 http://172.17.0.1/private stretch-staging/main armhf libpangoft2-1.0-0 armhf 1.40.3-3 [196 kB]
Get:88 http://172.17.0.1/private stretch-staging/main armhf libpangocairo-1.0-0 armhf 1.40.3-3 [186 kB]
Get:89 http://172.17.0.1/private stretch-staging/main armhf libsm6 armhf 2:1.2.2-1+b1 [31.2 kB]
Get:90 http://172.17.0.1/private stretch-staging/main armhf libtcl8.6 armhf 8.6.6+dfsg-1 [861 kB]
Get:91 http://172.17.0.1/private stretch-staging/main armhf libtiff5 armhf 4.0.7-1 [209 kB]
Get:92 http://172.17.0.1/private stretch-staging/main armhf libtk8.6 armhf 8.6.6-1 [659 kB]
Get:93 http://172.17.0.1/private stretch-staging/main armhf libxt6 armhf 1:1.1.5-1 [155 kB]
Get:94 http://172.17.0.1/private stretch-staging/main armhf r-base-core armhf 3.3.2-1 [20.8 MB]
Get:95 http://172.17.0.1/private stretch-staging/main armhf libgfortran-6-dev armhf 6.2.0-13+rpi1 [199 kB]
Get:96 http://172.17.0.1/private stretch-staging/main armhf gfortran-6 armhf 6.2.0-13+rpi1 [5406 kB]
Get:97 http://172.17.0.1/private stretch-staging/main armhf gfortran armhf 4:6.1.1-1 [1370 B]
Get:98 http://172.17.0.1/private stretch-staging/main armhf libblas-dev armhf 3.6.1-2 [18.9 kB]
Get:99 http://172.17.0.1/private stretch-staging/main armhf liblapack-dev armhf 3.6.1-2 [1379 kB]
Get:100 http://172.17.0.1/private stretch-staging/main armhf libtinfo-dev armhf 6.0+20160917-1 [65.4 kB]
Get:101 http://172.17.0.1/private stretch-staging/main armhf libncurses5-dev armhf 6.0+20160917-1 [245 kB]
Get:102 http://172.17.0.1/private stretch-staging/main armhf libreadline-dev armhf 7.0-1 [109 kB]
Get:103 http://172.17.0.1/private stretch-staging/main armhf libjpeg62-turbo-dev armhf 1:1.5.1-2 [181 kB]
Get:104 http://172.17.0.1/private stretch-staging/main armhf libjpeg-dev all 1:1.5.1-2 [56.1 kB]
Get:105 http://172.17.0.1/private stretch-staging/main armhf libpcre16-3 armhf 2:8.39-2 [235 kB]
Get:106 http://172.17.0.1/private stretch-staging/main armhf libpcre32-3 armhf 2:8.39-2 [227 kB]
Get:107 http://172.17.0.1/private stretch-staging/main armhf libpcre3-dev armhf 2:8.39-2 [568 kB]
Get:108 http://172.17.0.1/private stretch-staging/main armhf zlib1g-dev armhf 1:1.2.8.dfsg-2+b1 [197 kB]
Get:109 http://172.17.0.1/private stretch-staging/main armhf libpng-dev armhf 1.6.26-2 [235 kB]
Get:110 http://172.17.0.1/private stretch-staging/main armhf libbz2-dev armhf 1.0.6-8 [27.8 kB]
Get:111 http://172.17.0.1/private stretch-staging/main armhf liblzma-dev armhf 5.2.2-1.2 [284 kB]
Get:112 http://172.17.0.1/private stretch-staging/main armhf icu-devtools armhf 57.1-4 [156 kB]
Get:113 http://172.17.0.1/private stretch-staging/main armhf libicu-dev armhf 57.1-4 [15.7 MB]
Get:114 http://172.17.0.1/private stretch-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:115 http://172.17.0.1/private stretch-staging/main armhf xauth armhf 1:1.0.9-1 [35.6 kB]
Get:116 http://172.17.0.1/private stretch-staging/main armhf r-base-dev all 3.3.2-1 [4292 B]
Get:117 http://172.17.0.1/private stretch-staging/main armhf dh-r all 20160916 [7378 B]
Get:118 http://172.17.0.1/private stretch-staging/main armhf r-bioc-biocgenerics all 0.20.0-1 [483 kB]
Get:119 http://172.17.0.1/private stretch-staging/main armhf r-bioc-biobase armhf 2.34.0-1 [1989 kB]
Get:120 http://172.17.0.1/private stretch-staging/main armhf r-cran-lambda.r all 1.1.9-1 [66.7 kB]
Get:121 http://172.17.0.1/private stretch-staging/main armhf r-cran-futile.options all 1.0.0-2 [15.4 kB]
Get:122 http://172.17.0.1/private stretch-staging/main armhf r-cran-futile.logger all 1.4.3-1 [90.8 kB]
Get:123 http://172.17.0.1/private stretch-staging/main armhf r-cran-snow all 1:0.4.2-1 [65.0 kB]
Get:124 http://172.17.0.1/private stretch-staging/main armhf r-bioc-biocparallel all 1.8.0-2 [633 kB]
Get:125 http://172.17.0.1/private stretch-staging/main armhf r-bioc-s4vectors armhf 0.12.0-1 [1104 kB]
Get:126 http://172.17.0.1/private stretch-staging/main armhf r-bioc-iranges armhf 2.8.0-1 [1428 kB]
Get:127 http://172.17.0.1/private stretch-staging/main armhf r-bioc-xvector armhf 0.14.0-1 [327 kB]
Get:128 http://172.17.0.1/private stretch-staging/main armhf r-bioc-biostrings armhf 2.40.2-1 [13.5 MB]
Get:129 http://172.17.0.1/private stretch-staging/main armhf r-bioc-genomeinfodb all 1.10.0-1 [14.7 MB]
Get:130 http://172.17.0.1/private stretch-staging/main armhf r-bioc-genomicranges armhf 1.24.0-1 [1301 kB]
Get:131 http://172.17.0.1/private stretch-staging/main armhf r-cran-bitops armhf 1.0-6-1 [23.6 kB]
Get:132 http://172.17.0.1/private stretch-staging/main armhf r-bioc-rsamtools armhf 1.26.1-1 [3196 kB]
Get:133 http://172.17.0.1/private stretch-staging/main armhf r-cran-lattice armhf 0.20-34-1 [713 kB]
Get:134 http://172.17.0.1/private stretch-staging/main armhf r-cran-matrix armhf 1.2-7.1-1 [2248 kB]
Get:135 http://172.17.0.1/private stretch-staging/main armhf r-bioc-summarizedexperiment all 1.4.0-1 [1353 kB]
Get:136 http://172.17.0.1/private stretch-staging/main armhf r-bioc-genomicalignments armhf 1.8.0-1 [1444 kB]
Get:137 http://172.17.0.1/private stretch-staging/main armhf r-cran-hwriter all 1.3.2-1 [137 kB]
Get:138 http://172.17.0.1/private stretch-staging/main armhf r-cran-rcolorbrewer all 1.1-2-1 [26.0 kB]
Get:139 http://172.17.0.1/private stretch-staging/main armhf r-cran-latticeextra armhf 0.6-28-2 [2059 kB]
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No schema files found: doing nothing.
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update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
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update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+18) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
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Updating certificates in /etc/ssl/certs...
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Creating config file /etc/papersize with new version
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update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
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Not building database; man-db/auto-update is not 'true'.
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Setting up libtool (2.4.6-2) ...
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update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libfontconfig1:armhf (2.11.0-6.7) ...
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update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
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Setting up libkrb5-3:armhf (1.15~beta1-1) ...
Setting up libxft2:armhf (2.3.2-1) ...
Setting up fontconfig (2.11.0-6.7) ...
Regenerating fonts cache... done.
Setting up liblapack-dev (3.6.1-2) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libgssapi-krb5-2:armhf (1.15~beta1-1) ...
Setting up xauth (1:1.0.9-1) ...
Setting up libpango-1.0-0:armhf (1.40.3-3) ...
Setting up libcairo2:armhf (1.14.6-1.1) ...
Setting up libcurl3:armhf (7.50.1-1) ...
Setting up libtk8.6:armhf (8.6.6-1) ...
Setting up libpangoft2-1.0-0:armhf (1.40.3-3) ...
Setting up libpangocairo-1.0-0:armhf (1.40.3-3) ...
Setting up r-base-core (3.3.2-1) ...
Creating config file /etc/R/Renviron with new version
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Setting up r-bioc-biocgenerics (0.20.0-1) ...
Setting up r-bioc-biobase (2.34.0-1) ...
Setting up r-cran-rcolorbrewer (1.1-2-1) ...
Setting up r-cran-bitops (1.0-6-1) ...
Setting up r-cran-futile.options (1.0.0-2) ...
Setting up r-cran-hwriter (1.3.2-1) ...
Setting up r-cran-lambda.r (1.1.9-1) ...
Setting up r-cran-snow (1:0.4.2-1) ...
Setting up r-bioc-s4vectors (0.12.0-1) ...
Setting up r-cran-lattice (0.20-34-1) ...
Setting up r-cran-latticeextra (0.6-28-2) ...
Setting up r-cran-futile.logger (1.4.3-1) ...
Setting up r-bioc-iranges (2.8.0-1) ...
Setting up r-bioc-biocparallel (1.8.0-2) ...
Setting up r-cran-matrix (1.2-7.1-1) ...
Setting up r-bioc-genomeinfodb (1.10.0-1) ...
Setting up r-bioc-xvector (0.14.0-1) ...
Setting up r-bioc-biostrings (2.40.2-1) ...
Setting up r-bioc-genomicranges (1.24.0-1) ...
Setting up r-bioc-summarizedexperiment (1.4.0-1) ...
Setting up r-bioc-rsamtools (1.26.1-1) ...
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Setting up dh-autoreconf (12) ...
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Setting up debhelper (10.2.2) ...
Setting up dh-r (20160916) ...
Setting up sbuild-build-depends-r-bioc-shortread-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.24-5+rpi1) ...
Processing triggers for systemd (232-3) ...
Processing triggers for ca-certificates (20161102) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.6.0-1-armmp armhf (armv7l)
Toolchain package versions: binutils_2.27.51.20161108-1 dpkg-dev_1.18.15 g++-6_6.2.0-13+rpi1 gcc-6_6.2.0-13+rpi1 libc6-dev_2.24-5+rpi1 libstdc++-6-dev_6.2.0-13+rpi1 libstdc++6_6.2.0-13+rpi1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch
Package versions: adduser_3.115 apt_1.3.1 autoconf_2.69-10 automake_1:1.15-5 autopoint_0.19.8.1-1 autotools-dev_20161112.1 base-files_9.6+rpi1 base-passwd_3.5.41 bash_4.4-2 binutils_2.27.51.20161108-1 bsdmainutils_9.0.12 bsdutils_1:2.29-1 build-essential_12.2 bzip2_1.0.6-8 ca-certificates_20161102 cdbs_0.4.150 coreutils_8.25-2 cpio_2.11+dfsg-5 cpp_4:6.1.1-1 cpp-6_6.2.0-13+rpi1 dash_0.5.8-2.3 dctrl-tools_2.24-2 debconf_1.5.59 debfoster_2.7-2.1 debhelper_10.2.2 debianutils_4.8 dh-autoreconf_12 dh-r_20160916 dh-strip-nondeterminism_0.028-1 diffutils_1:3.5-1 dirmngr_2.1.15-9 dmsetup_2:1.02.136-1 dpkg_1.18.15 dpkg-dev_1.18.15 e2fslibs_1.43.3-1 e2fsprogs_1.43.3-1 fakeroot_1.21-2 file_1:5.29-1 findutils_4.6.0+git+20160703-2 fontconfig_2.11.0-6.7 fontconfig-config_2.11.0-6.7 fonts-dejavu-core_2.37-1 fuse2fs_1.43.3-1 g++_4:6.1.1-1 g++-6_6.2.0-13+rpi1 gcc_4:6.1.1-1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.3-14 gcc-6_6.2.0-13+rpi1 gcc-6-base_6.2.0-13+rpi1 gettext_0.19.8.1-1 gettext-base_0.19.8.1-1 gfortran_4:6.1.1-1 gfortran-6_6.2.0-13+rpi1 gnupg_2.1.15-9 gnupg-agent_2.1.15-9 gnupg-l10n_2.1.15-9 gpgv_2.1.15-9 grep_2.26-1 groff-base_1.22.3-8 gzip_1.6-5 hostname_3.18 icu-devtools_57.1-4 init_1.46 init-system-helpers_1.46 initscripts_2.88dsf-59.8 insserv_1.14.0-5.4 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-9+rpi1 kmod_23-1 libacl1_2.2.52-3 libadns1_1.5.0~rc1-1 libapparmor1_2.10.95-6 libapt-pkg5.0_1.3.1 libarchive-zip-perl_1.59-1 libasan3_6.2.0-13+rpi1 libassuan0_2.4.3-1 libatomic1_6.2.0-13+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.6.7-1 libaudit1_1:2.6.7-1 libblas-common_3.6.1-2 libblas-dev_3.6.1-2 libblas3_3.6.1-2 libblkid1_2.29-1 libbsd0_0.8.3-1 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.24-5+rpi1 libc-dev-bin_2.24-5+rpi1 libc6_2.24-5+rpi1 libc6-dev_2.24-5+rpi1 libcairo2_1.14.6-1.1 libcap-ng0_0.7.7-3 libcap2_1:2.25-1 libcap2-bin_1:2.25-1 libcc1-0_6.2.0-13+rpi1 libcomerr2_1.43.3-1 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libxdmcp6_1:1.1.2-1.1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml2_2.9.4+dfsg1-2.1 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.9-2 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 linux-libc-dev_3.18.5-1~exp1+rpi19+stretch login_1:4.2-3.2 lsb-base_9.20161101+rpi1 m4_1.4.17-5 make_4.1-9 makedev_2.3.1-93 man-db_2.7.5-2 manpages_4.08-1 mawk_1.3.3-17 mount_2.29-1 multiarch-support_2.24-5+rpi1 nano_2.7.1-1 ncurses-base_6.0+20160917-1 ncurses-bin_6.0+20160917-1 openssl_1.1.0c-2 passwd_1:4.2-3.2 patch_2.7.5-1 perl_5.24.1~rc3-3 perl-base_5.24.1~rc3-3 perl-modules-5.24_5.24.1~rc3-3 pinentry-curses_0.9.7-9 po-debconf_1.0.20 procps_2:3.3.12-2 r-base-core_3.3.2-1 r-base-dev_3.3.2-1 r-bioc-biobase_2.34.0-1 r-bioc-biocgenerics_0.20.0-1 r-bioc-biocparallel_1.8.0-2 r-bioc-biostrings_2.40.2-1 r-bioc-genomeinfodb_1.10.0-1 r-bioc-genomicalignments_1.8.0-1 r-bioc-genomicranges_1.24.0-1 r-bioc-iranges_2.8.0-1 r-bioc-rsamtools_1.26.1-1 r-bioc-s4vectors_0.12.0-1 r-bioc-summarizedexperiment_1.4.0-1 r-bioc-xvector_0.14.0-1 r-cran-bitops_1.0-6-1 r-cran-futile.logger_1.4.3-1 r-cran-futile.options_1.0.0-2 r-cran-hwriter_1.3.2-1 r-cran-lambda.r_1.1.9-1 r-cran-lattice_0.20-34-1 r-cran-latticeextra_0.6-28-2 r-cran-matrix_1.2-7.1-1 r-cran-rcolorbrewer_1.1-2-1 r-cran-snow_1:0.4.2-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-1 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-shortread-dummy_0.invalid.0 sed_4.2.2-8 sensible-utils_0.0.9 startpar_0.59-3.1 systemd_232-3 systemd-sysv_232-3 sysv-rc_2.88dsf-59.8 sysvinit-utils_2.88dsf-59.8 tar_1.29b-1.1 tzdata_2016i-1 ucf_3.0036 udev_232-3 unzip_6.0-20 util-linux_2.29-1 x11-common_1:7.7+18 xauth_1:1.0.9-1 xdg-utils_1.1.1-1 xz-utils_5.2.2-1.2 zip_3.0-11 zlib1g_1:1.2.8.dfsg-2+b1 zlib1g-dev_1:1.2.8.dfsg-2+b1
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Wed Oct 26 15:11:44 2016 UTC
gpgv: using RSA key 578A0494D1C646D1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-shortread_1.32.0-1.dsc
dpkg-source: info: extracting r-bioc-shortread in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-shortread_1.32.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-shortread_1.32.0-1.debian.tar.xz
dpkg-source: info: applying use_debian_packaged_zlib.patch
Check disc space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-97cdd135-7a0f-46fb-aebb-6f15028624b0
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-shortread
dpkg-buildpackage: info: source version 1.32.0-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build r-bioc-shortread-1.32.0
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_testdir -a -O--buildsystem=R
dh_update_autotools_config -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: ShortRead Version: 1.32.0
I: Building using R version 3.3.2-1
I: R API version: r-api-3
I: Using built-time from d/changelog: Wed, 26 Oct 2016 17:08:54 +0200
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-shortread/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-shortread/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 26 Oct 2016 17:08:54 +0200'"
* installing *source* package 'ShortRead' ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for gzeof in -lz... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of unsigned long... 4
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_ShortRead.c -o R_init_ShortRead.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c alphabet.c -o alphabet.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io.c -o io.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_bowtie.c -o io_bowtie.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c io_soap.c -o io_soap.o
g++ -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readBfaToc.cc -o readBfaToc.o
g++ -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c read_maq_map.cc -o read_maq_map.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sampler.c -o sampler.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c trim.c -o trim.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c util.c -o util.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include" -fopenmp -fpic -g -O2 -fdebug-prefix-map=/build/r-base-VDhYsW/r-base-3.3.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c xsnap.c -o xsnap.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o ShortRead.so Biostrings_stubs.o IRanges_stubs.o R_init_ShortRead.o S4Vectors_stubs.o XVector_stubs.o alphabet.o io.o io_bowtie.o io_soap.o readBfaToc.o read_maq_map.o sampler.o trim.o util.o xsnap.o -lz -fopenmp -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-shortread/usr/lib/R/site-library/ShortRead/libs
** R
** inst
** preparing package for lazy loading
code for methods in class "ShortReadFile" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "FastqFileReader" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "QAData" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "Snapshot" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "SpTrellis" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "FastqSampler" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
code for methods in class "FastqStreamer" was not checked for suspicious field assignments (recommended package 'codetools' not available?)
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ShortRead)
I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.11.3)
I: Using r-bioc-biocparallel for Depends:BiocParallel
I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.37.1)
I: Using r-bioc-rsamtools for Depends:Rsamtools (>= 1.21.4)
I: Using r-bioc-genomicalignments for Depends:GenomicAlignments (>= 1.5.4)
W: Cannot find a debian package for Suggests:BiocStyle
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-biomart for Suggests:biomaRt
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
W: Cannot find a debian package for Suggests:yeastNagalakshmi
I: Using r-bioc-biobase for Imports:Biobase
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.7.1)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.3.7)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.1.19)
I: Using r-bioc-genomicranges for Imports:GenomicRanges (>= 1.21.6)
I: Using r-cran-hwriter for Imports:hwriter
I: Using r-cran-lattice for Imports:lattice
I: Using r-cran-latticeextra for Imports:latticeExtra
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-shortread-dbgsym' in '../r-bioc-shortread-dbgsym_1.32.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-shortread' in '../r-bioc-shortread_1.32.0-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genbuildinfo: warning: File::FcntlLock not available; using flock which is not NFS-safe
dpkg-genchanges --build=any -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-shortread_1.32.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-shortread-1.32.0
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2016-11-29T10:26:48Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-shortread_1.32.0-1_armhf.changes:
----------------------------------------
Format: 1.8
Date: Wed, 26 Oct 2016 17:08:54 +0200
Source: r-bioc-shortread
Binary: r-bioc-shortread
Architecture: armhf
Version: 1.32.0-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-shortread - GNU R classes and methods for high-throughput short-read sequenci
Changes:
r-bioc-shortread (1.32.0-1) unstable; urgency=medium
.
* New upstream version
* Convert to dh-r
* Generic BioConductor homepage
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Files:
9dcfc242b40e98f936f693737ae75c26 140214 debug extra r-bioc-shortread-dbgsym_1.32.0-1_armhf.deb
61cfeebf03c8d78529dfdff510c25087 7963 gnu-r optional r-bioc-shortread_1.32.0-1_armhf.buildinfo
298a7d9b4e0c74ded36ee51d8e57f3e6 4218888 gnu-r optional r-bioc-shortread_1.32.0-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-shortread-dbgsym_1.32.0-1_armhf.deb
------------------------------------------
new debian package, version 2.0.
size 140214 bytes: control archive=498 bytes.
460 bytes, 13 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-shortread-dbgsym
Source: r-bioc-shortread
Version: 1.32.0-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 175
Depends: r-bioc-shortread (= 1.32.0-1)
Section: debug
Priority: extra
Homepage: https://bioconductor.org/packages/ShortRead/
Description: Debug symbols for r-bioc-shortread
Auto-Built-Package: debug-symbols
Build-Ids: c72cdf9f6c1e2cac485253cb243798c42becbe67
drwxr-xr-x root/root 0 2016-10-26 15:08 ./
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/debug/
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/debug/.build-id/c7/
-rw-r--r-- root/root 167996 2016-10-26 15:08 ./usr/lib/debug/.build-id/c7/2cdf9f6c1e2cac485253cb243798c42becbe67.debug
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/share/
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/share/doc/
lrwxrwxrwx root/root 0 2016-10-26 15:08 ./usr/share/doc/r-bioc-shortread-dbgsym -> r-bioc-shortread
r-bioc-shortread_1.32.0-1_armhf.deb
-----------------------------------
new debian package, version 2.0.
size 4218888 bytes: control archive=4359 bytes.
1254 bytes, 17 lines control
10805 bytes, 113 lines md5sums
Package: r-bioc-shortread
Version: 1.32.0-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 5989
Depends: r-base-core (>= 3.3.2-1), r-api-3, r-bioc-biocgenerics (>= 0.11.3), r-bioc-biocparallel, r-bioc-biostrings (>= 2.37.1), r-bioc-rsamtools (>= 1.21.4), r-bioc-genomicalignments (>= 1.5.4), r-bioc-biobase, r-bioc-s4vectors (>= 0.7.1), r-bioc-iranges (>= 2.3.7), r-bioc-genomeinfodb (>= 1.1.19), r-bioc-genomicranges (>= 1.21.6), r-cran-hwriter, r-cran-lattice, r-cran-latticeextra, libc6 (>= 2.7), libgcc1 (>= 1:3.5), libgomp1 (>= 4.9), libstdc++6 (>= 5.2), zlib1g (>= 1:1.1.4)
Suggests: r-cran-runit, r-bioc-biomart, r-bioc-genomicfeatures
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/ShortRead/
Description: GNU R classes and methods for high-throughput short-read sequencing data
This BioConductor module is a package for input, quality assessment,
manipulation and output of high-throughput sequencing data. ShortRead is
provided in the R and Bioconductor environments, allowing ready access
to additional facilities for advanced statistical analysis, data
transformation, visualization and integration with diverse genomic
resources.
drwxr-xr-x root/root 0 2016-10-26 15:08 ./
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drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/
-rw-r--r-- root/root 1158 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/CITATION
-rw-r--r-- root/root 1320 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/DESCRIPTION
-rw-r--r-- root/root 5917 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/INDEX
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/Meta/
-rw-r--r-- root/root 5588 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/Meta/Rd.rds
-rw-r--r-- root/root 5744 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/Meta/hsearch.rds
-rw-r--r-- root/root 4151 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/Meta/links.rds
-rw-r--r-- root/root 848 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/Meta/nsInfo.rds
-rw-r--r-- root/root 1373 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/Meta/package.rds
-rw-r--r-- root/root 261 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/Meta/vignette.rds
-rw-r--r-- root/root 1147 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/NAMESPACE
-rw-r--r-- root/root 12051 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/NEWS
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/R/
-rw-r--r-- root/root 1056 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/R/ShortRead
-rw-r--r-- root/root 893741 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/R/ShortRead.rdb
-rw-r--r-- root/root 11876 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/R/ShortRead.rdx
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/doc/
-rw-r--r-- root/root 5961 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/doc/Overview.R
-rw-r--r-- root/root 15627 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/doc/Overview.Rnw
-rw-r--r-- root/root 132475 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/doc/Overview.pdf
-rw-r--r-- root/root 1355 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/doc/index.html
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/Data/
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drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/
-rw-r--r-- root/root 31740 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_1_sequence.txt
-rw-r--r-- root/root 121368 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_2_export.txt
-rw-r--r-- root/root 90912 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/GERALD/s_5_0001_realign.txt
-rw-r--r-- root/root 184320 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_prb.txt
-rw-r--r-- root/root 12452 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_0001_seq.txt
-rw-r--r-- root/root 21534 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/Bustard/s_1_1_0001_qseq.txt
-rw-r--r-- root/root 261216 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_int.txt
-rw-r--r-- root/root 261028 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/Data/C1-36Firecrest/s_1_0001_nse.txt
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/
-rw-r--r-- root/root 1408740 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/E-MTAB-1147/ERR127302_1_subset.fastq.gz
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drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/bowtie/
-rw-r--r-- root/root 117004 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/bowtie/s_1_aligned_bowtie.txt
drwxr-xr-x root/root 0 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/maq/
-rw-r--r-- root/root 131501 2016-10-26 15:08 ./usr/lib/R/site-library/ShortRead/extdata/maq/out.aln.1.txt
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| Summary |
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Build Architecture: armhf
Build-Space: 19080
Build-Time: 235
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 883
Job: r-bioc-shortread_1.32.0-1
Machine Architecture: armhf
Package: r-bioc-shortread
Package-Time: 1164
Source-Version: 1.32.0-1
Space: 19080
Status: successful
Version: 1.32.0-1
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Finished at 2016-11-29T10:26:48Z
Build needed 00:19:24, 19080k disc space