Build log for r-bioc-shortread (1.26.0-1) on armhf

r-bioc-shortread → 1.26.0-1 → armhf → 2015-07-14 21:30:54

sbuild (Debian sbuild) 0.65.2 (24 Mar 2015) on testwandboard

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║ r-bioc-shortread 1.26.0-1 (armhf)                          14 Jul 2015 21:07 ║
╚══════════════════════════════════════════════════════════════════════════════╝

Package: r-bioc-shortread
Version: 1.26.0-1
Source Version: 1.26.0-1
Distribution: stretch-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf

I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-rVmRrA/r-bioc-shortread-1.26.0' with '«PKGBUILDDIR»'
I: NOTICE: Log filtering will replace 'build/r-bioc-shortread-rVmRrA' with '«BUILDDIR»'
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/stretch-staging-armhf-sbuild-90826f9b-aba9-4e6c-a733-9d74f90938dc' with '«CHROOT»'

┌──────────────────────────────────────────────────────────────────────────────┐
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Get:1 http://172.17.0.1 stretch-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1 stretch-staging/main Sources [8089 kB]
Get:3 http://172.17.0.1 stretch-staging/main armhf Packages [9947 kB]
Ign http://172.17.0.1 stretch-staging/main Translation-en
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Check APT
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Checking available source versions...

Download source files with APT
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Reading package lists...
Building dependency tree...
NOTICE: 'r-bioc-shortread' packaging is maintained in the 'Svn' version control system at:
svn://anonscm.debian.org/debian-med/trunk/packages/R/r-bioc-shortread/trunk/
Need to get 5158 kB of source archives.
Get:1 http://172.17.0.1/private/ stretch-staging/main r-bioc-shortread 1.26.0-1 (dsc) [2220 B]
Get:2 http://172.17.0.1/private/ stretch-staging/main r-bioc-shortread 1.26.0-1 (tar) [5151 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main r-bioc-shortread 1.26.0-1 (diff) [4928 B]
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Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package `sbuild-build-depends-core-dummy' in `/«BUILDDIR»/resolver-pE5emc/apt_archive/sbuild-build-depends-core-dummy.deb'.
OK
Ign file: ./ InRelease
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Ign file: ./ Translation-en
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┌──────────────────────────────────────────────────────────────────────────────┐
│ Install core build dependencies (apt-based resolver)                         │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
The following NEW packages will be installed:
  sbuild-build-depends-core-dummy
debconf: delaying package configuration, since apt-utils is not installed
0 upgraded, 1 newly installed, 0 to remove and 81 not upgraded.
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(Reading database ... 11998 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
Merged Build-Depends: libc6-dev | libc-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cdbs, r-base-dev, r-cran-latticeextra, r-bioc-biobase (>= 2.26.0), r-bioc-genomicalignments (>= 1.4.1), r-cran-hwriter
Filtered Build-Depends: libc6-dev, gcc (>= 4:4.9.1), g++ (>= 4:4.9.1), make, dpkg-dev (>= 1.17.11), debhelper (>= 9), cdbs, r-base-dev, r-cran-latticeextra, r-bioc-biobase (>= 2.26.0), r-bioc-genomicalignments (>= 1.4.1), r-cran-hwriter
dpkg-deb: building package `sbuild-build-depends-r-bioc-shortread-dummy' in `/«BUILDDIR»/resolver-ZOXXSz/apt_archive/sbuild-build-depends-r-bioc-shortread-dummy.deb'.
OK
Ign file: ./ InRelease
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Get:2 file: ./ Release [2119 B]
Ign file: ./ Translation-en
Reading package lists...
Reading package lists...

┌──────────────────────────────────────────────────────────────────────────────┐
│ Install r-bioc-shortread build dependencies (apt-based resolver)             │
└──────────────────────────────────────────────────────────────────────────────┘

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following extra packages will be installed:
  bsdmainutils bzip2 ca-certificates cdbs cpp cpp-4.9 debhelper file
  fontconfig fontconfig-config fonts-dejavu-core g++-4.9 gcc gcc-4.9
  gcc-4.9-base gcc-5-base gettext gettext-base gfortran gfortran-4.9
  groff-base intltool-debian libasan1 libasprintf0c2 libatomic1 libblas-common
  libblas-dev libblas3 libbz2-1.0 libbz2-dev libcairo2 libcroco3 libcurl3
  libdatrie1 libexpat1 libffi6 libfontconfig1 libfreetype6 libgcc-4.9-dev
  libgcc1 libgfortran-4.9-dev libgfortran3 libglib2.0-0 libgnutls-deb0-28
  libgomp1 libgraphite2-3 libgssapi-krb5-2 libharfbuzz0b libhogweed4 libice6
  libidn11 libisl13 libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev liblapack3
  libldap-2.4-2 liblzma-dev liblzma5 libmagic1 libmpfr4 libncurses5
  libncurses5-dev libncursesw5 libnettle6 libp11-kit0 libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3
  libpcre3 libpcre3-dev libpcre32-3 libpcrecpp0 libpipeline1 libpixman-1-0
  libpng12-dev libreadline-dev libreadline6-dev librtmp1 libsasl2-2
  libsasl2-modules-db libsm6 libsqlite3-0 libssh2-1 libssl1.0.0
  libstdc++-4.9-dev libstdc++6 libtasn1-6 libtcl8.6 libthai-data libthai0
  libtiff5 libtinfo-dev libtinfo5 libtk8.6 libubsan0 libunistring0 libx11-6
  libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6
  libxft2 libxml2 libxrender1 libxss1 libxt6 littler man-db ncurses-bin
  openssl po-debconf r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
  r-bioc-biocparallel r-bioc-biostrings r-bioc-genomeinfodb
  r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges
  r-bioc-rsamtools r-bioc-s4vectors r-bioc-xvector r-cran-base64enc
  r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate
  r-cran-codetools r-cran-dbi r-cran-digest r-cran-fail r-cran-foreach
  r-cran-futile.logger r-cran-futile.options r-cran-hwriter r-cran-iterators
  r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-pkgkitten
  r-cran-plyr r-cran-rcolorbrewer r-cran-rcpp r-cran-rsqlite r-cran-sendmailr
  r-cran-snow r-cran-stringr ucf unzip x11-common xdg-utils zip zlib1g-dev
Suggested packages:
  wamerican wordlist whois vacation bzip2-doc devscripts cpp-doc
  gcc-4.9-locales dh-make gcc-4.9-doc libstdc++6-4.9-dbg gcc-multilib
  manpages-dev autoconf automake libtool flex bison gdb gcc-doc libgcc1-dbg
  libgomp1-dbg libitm1-dbg libatomic1-dbg libasan1-dbg liblsan0-dbg
  libtsan0-dbg libubsan0-dbg libcilkrts5-dbg libquadmath-dbg gettext-doc
  gfortran-doc gfortran-4.9-doc libgfortran3-dbg groff gnutls-bin krb5-doc
  krb5-user liblzma-doc ncurses-doc readline-doc libstdc++-4.9-doc tcl8.6
  tk8.6 r-cran-getopt less www-browser libmail-box-perl r-doc-info r-doc-pdf
  r-mathlib r-base-html texlive-base texlive-latex-base
  texlive-generic-recommended texlive-fonts-recommended texlive-fonts-extra
  texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
  r-cran-mpi r-cran-rmysql r-cran-inline r-cran-runit r-cran-rmpi
  r-cran-rsprng r-cran-rlecuyer gvfs-bin
Recommended packages:
  autotools-dev curl wget lynx-cur autopoint libasprintf-dev libgettextpo-dev
  libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales libgpm2
  libsasl2-modules xml-core libmail-sendmail-perl r-recommended r-doc-html
  r-cran-doparallel r-bioc-shortread r-cran-mass r-cran-domc r-cran-abind
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  bsdmainutils ca-certificates cdbs debhelper file fontconfig
  fontconfig-config fonts-dejavu-core gcc-5-base gettext gettext-base gfortran
  gfortran-4.9 groff-base intltool-debian libasprintf0c2 libblas-common
  libblas-dev libblas3 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1
  libexpat1 libffi6 libfontconfig1 libfreetype6 libgfortran-4.9-dev
  libgfortran3 libglib2.0-0 libgnutls-deb0-28 libgraphite2-3 libgssapi-krb5-2
  libharfbuzz0b libhogweed4 libice6 libidn11 libisl13 libjbig0 libjpeg-dev
  libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3
  libkrb5support0 liblapack-dev liblapack3 libldap-2.4-2 liblzma-dev libmagic1
  libncurses5-dev libnettle6 libp11-kit0 libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
  libpcre32-3 libpcrecpp0 libpipeline1 libpixman-1-0 libpng12-dev
  libreadline-dev libreadline6-dev librtmp1 libsasl2-2 libsasl2-modules-db
  libsm6 libsqlite3-0 libssh2-1 libssl1.0.0 libtasn1-6 libtcl8.6 libthai-data
  libthai0 libtiff5 libtinfo-dev libtk8.6 libunistring0 libx11-6 libx11-data
  libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2
  libxml2 libxrender1 libxss1 libxt6 littler man-db openssl po-debconf
  r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics
  r-bioc-biocparallel r-bioc-biostrings r-bioc-genomeinfodb
  r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges
  r-bioc-rsamtools r-bioc-s4vectors r-bioc-xvector r-cran-base64enc
  r-cran-batchjobs r-cran-bbmisc r-cran-bitops r-cran-brew r-cran-checkmate
  r-cran-codetools r-cran-dbi r-cran-digest r-cran-fail r-cran-foreach
  r-cran-futile.logger r-cran-futile.options r-cran-hwriter r-cran-iterators
  r-cran-lambda.r r-cran-lattice r-cran-latticeextra r-cran-pkgkitten
  r-cran-plyr r-cran-rcolorbrewer r-cran-rcpp r-cran-rsqlite r-cran-sendmailr
  r-cran-snow r-cran-stringr sbuild-build-depends-r-bioc-shortread-dummy ucf
  unzip x11-common xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  bzip2 cpp cpp-4.9 g++-4.9 gcc gcc-4.9 gcc-4.9-base libasan1 libatomic1
  libbz2-1.0 libgcc-4.9-dev libgcc1 libgomp1 liblzma5 libmpfr4 libncurses5
  libncursesw5 libpcre3 libstdc++-4.9-dev libstdc++6 libtinfo5 libubsan0
  ncurses-bin
23 upgraded, 147 newly installed, 0 to remove and 58 not upgraded.
Need to get 111 MB/111 MB of archives.
After this operation, 179 MB of additional disk space will be used.
Get:1 http://172.17.0.1/private/ stretch-staging/main ncurses-bin armhf 5.9+20150516-2 [346 kB]
Get:2 http://172.17.0.1/private/ stretch-staging/main libpcre3 armhf 2:8.35-7 [299 kB]
Get:3 http://172.17.0.1/private/ stretch-staging/main gcc-5-base armhf 5.1.1-12+rpi1 [165 kB]
Get:4 http://172.17.0.1/private/ stretch-staging/main libgcc1 armhf 1:5.1.1-12+rpi1 [38.5 kB]
Get:5 http://172.17.0.1/private/ stretch-staging/main libstdc++6 armhf 5.1.1-12+rpi1 [249 kB]
Get:6 http://172.17.0.1/private/ stretch-staging/main libpipeline1 armhf 1.4.0-1 [24.0 kB]
Get:7 http://172.17.0.1/private/ stretch-staging/main groff-base armhf 1.22.3-1 [1085 kB]
Get:8 http://172.17.0.1/private/ stretch-staging/main libtinfo5 armhf 5.9+20150516-2 [275 kB]
Get:9 http://172.17.0.1/private/ stretch-staging/main libncurses5 armhf 5.9+20150516-2 [76.6 kB]
Get:10 http://172.17.0.1/private/ stretch-staging/main libncursesw5 armhf 5.9+20150516-2 [99.3 kB]
Get:11 http://172.17.0.1/private/ stretch-staging/main bsdmainutils armhf 9.0.6 [177 kB]
Get:12 http://172.17.0.1/private/ stretch-staging/main man-db armhf 2.7.0.2-5 [972 kB]
Get:13 http://172.17.0.1/private/ stretch-staging/main libasprintf0c2 armhf 0.19.4-1 [31.5 kB]
Get:14 http://172.17.0.1/private/ stretch-staging/main libkeyutils1 armhf 1.5.9-5 [10.9 kB]
Get:15 http://172.17.0.1/private/ stretch-staging/main libkrb5support0 armhf 1.12.1+dfsg-20 [54.9 kB]
Get:16 http://172.17.0.1/private/ stretch-staging/main libk5crypto3 armhf 1.12.1+dfsg-20 [108 kB]
Get:17 http://172.17.0.1/private/ stretch-staging/main libkrb5-3 armhf 1.12.1+dfsg-20 [258 kB]
Get:18 http://172.17.0.1/private/ stretch-staging/main libgssapi-krb5-2 armhf 1.12.1+dfsg-20 [128 kB]
Get:19 http://172.17.0.1/private/ stretch-staging/main libidn11 armhf 1.30-1 [166 kB]
Get:20 http://172.17.0.1/private/ stretch-staging/main libnettle6 armhf 3.1.1-3 [200 kB]
Get:21 http://172.17.0.1/private/ stretch-staging/main libhogweed4 armhf 3.1.1-3 [126 kB]
Get:22 http://172.17.0.1/private/ stretch-staging/main libffi6 armhf 3.1-2 [18.1 kB]
Get:23 http://172.17.0.1/private/ stretch-staging/main libp11-kit0 armhf 0.23.1-2 [94.1 kB]
Get:24 http://172.17.0.1/private/ stretch-staging/main libtasn1-6 armhf 4.5-2 [43.9 kB]
Get:25 http://172.17.0.1/private/ stretch-staging/main libgnutls-deb0-28 armhf 3.3.15-7 [645 kB]
Get:26 http://172.17.0.1/private/ stretch-staging/main libsasl2-modules-db armhf 2.1.26.dfsg1-13 [65.5 kB]
Get:27 http://172.17.0.1/private/ stretch-staging/main libsasl2-2 armhf 2.1.26.dfsg1-13 [97.2 kB]
Get:28 http://172.17.0.1/private/ stretch-staging/main libldap-2.4-2 armhf 2.4.40+dfsg-2+rpi1 [196 kB]
Get:29 http://172.17.0.1/private/ stretch-staging/main libmagic1 armhf 1:5.22+15-2 [244 kB]
Get:30 http://172.17.0.1/private/ stretch-staging/main liblzma5 armhf 5.1.1alpha+20120614-2.1 [186 kB]
Get:31 http://172.17.0.1/private/ stretch-staging/main libxml2 armhf 2.9.1+dfsg1-5 [703 kB]
Get:32 http://172.17.0.1/private/ stretch-staging/main libexpat1 armhf 2.1.0-6 [60.2 kB]
Get:33 http://172.17.0.1/private/ stretch-staging/main libfreetype6 armhf 2.5.2-4 [412 kB]
Get:34 http://172.17.0.1/private/ stretch-staging/main ucf all 3.0030 [69.7 kB]
Get:35 http://172.17.0.1/private/ stretch-staging/main fonts-dejavu-core all 2.35-1 [1064 kB]
Get:36 http://172.17.0.1/private/ stretch-staging/main fontconfig-config all 2.11.0-6.3 [273 kB]
Get:37 http://172.17.0.1/private/ stretch-staging/main libfontconfig1 armhf 2.11.0-6.3 [311 kB]
Get:38 http://172.17.0.1/private/ stretch-staging/main fontconfig armhf 2.11.0-6.3 [402 kB]
Get:39 http://172.17.0.1/private/ stretch-staging/main libisl13 armhf 0.14-2 [353 kB]
Get:40 http://172.17.0.1/private/ stretch-staging/main libmpfr4 armhf 3.1.3-1 [517 kB]
Get:41 http://172.17.0.1/private/ stretch-staging/main g++-4.9 armhf 4.9.3-1 [11.9 MB]
Get:42 http://172.17.0.1/private/ stretch-staging/main gcc-4.9 armhf 4.9.3-1 [4470 kB]
Get:43 http://172.17.0.1/private/ stretch-staging/main cpp-4.9 armhf 4.9.3-1 [4275 kB]
Get:44 http://172.17.0.1/private/ stretch-staging/main libgomp1 armhf 5.1.1-12+rpi1 [47.4 kB]
Get:45 http://172.17.0.1/private/ stretch-staging/main libatomic1 armhf 5.1.1-12+rpi1 [6720 B]
Get:46 http://172.17.0.1/private/ stretch-staging/main libubsan0 armhf 5.1.1-12+rpi1 [84.3 kB]
Get:47 http://172.17.0.1/private/ stretch-staging/main libstdc++-4.9-dev armhf 4.9.3-1 [1127 kB]
Get:48 http://172.17.0.1/private/ stretch-staging/main libgcc-4.9-dev armhf 4.9.3-1 [355 kB]
Get:49 http://172.17.0.1/private/ stretch-staging/main libasan1 armhf 4.9.3-1 [165 kB]
Get:50 http://172.17.0.1/private/ stretch-staging/main gcc-4.9-base armhf 4.9.3-1 [162 kB]
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Get:53 http://172.17.0.1/private/ stretch-staging/main libgfortran3 armhf 5.1.1-12+rpi1 [154 kB]
Get:54 http://172.17.0.1/private/ stretch-staging/main libgraphite2-3 armhf 1.2.4-3 [48.2 kB]
Get:55 http://172.17.0.1/private/ stretch-staging/main x11-common all 1:7.7+9 [287 kB]
Get:56 http://172.17.0.1/private/ stretch-staging/main libice6 armhf 2:1.0.9-1 [51.2 kB]
Get:57 http://172.17.0.1/private/ stretch-staging/main libjbig0 armhf 2.1-3.1 [27.5 kB]
Get:58 http://172.17.0.1/private/ stretch-staging/main libthai-data all 0.1.22-2 [161 kB]
Get:59 http://172.17.0.1/private/ stretch-staging/main libdatrie1 armhf 0.2.9-2 [31.5 kB]
Get:60 http://172.17.0.1/private/ stretch-staging/main libthai0 armhf 0.1.22-2 [44.8 kB]
Get:61 http://172.17.0.1/private/ stretch-staging/main libpango-1.0-0 armhf 1.36.8-3 [274 kB]
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Get:67 http://172.17.0.1/private/ stretch-staging/main libx11-6 armhf 2:1.6.3-1 [678 kB]
Get:68 http://172.17.0.1/private/ stretch-staging/main libxcb-render0 armhf 1.10-3 [16.0 kB]
Get:69 http://172.17.0.1/private/ stretch-staging/main libxcb-shm0 armhf 1.10-3 [11.0 kB]
Get:70 http://172.17.0.1/private/ stretch-staging/main libxext6 armhf 2:1.3.3-1 [48.1 kB]
Get:71 http://172.17.0.1/private/ stretch-staging/main libxrender1 armhf 1:0.9.8-1 [30.4 kB]
Get:72 http://172.17.0.1/private/ stretch-staging/main libcairo2 armhf 1.14.2-2 [672 kB]
Get:73 http://172.17.0.1/private/ stretch-staging/main libharfbuzz0b armhf 0.9.41-1 [488 kB]
Get:74 http://172.17.0.1/private/ stretch-staging/main libpangoft2-1.0-0 armhf 1.36.8-3 [207 kB]
Get:75 http://172.17.0.1/private/ stretch-staging/main libpangocairo-1.0-0 armhf 1.36.8-3 [197 kB]
Get:76 http://172.17.0.1/private/ stretch-staging/main libpaper1 armhf 1.1.24+nmu4 [21.4 kB]
Get:77 http://172.17.0.1/private/ stretch-staging/main libpcrecpp0 armhf 2:8.35-7 [139 kB]
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Get:79 http://172.17.0.1/private/ stretch-staging/main libssh2-1 armhf 1.5.0-2 [122 kB]
Get:80 http://172.17.0.1/private/ stretch-staging/main libtcl8.6 armhf 8.6.4+dfsg-2 [866 kB]
Get:81 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo armhf 1:1.4.0-7 [102 kB]
Get:82 http://172.17.0.1/private/ stretch-staging/main libtiff5 armhf 4.0.3-13 [193 kB]
Get:83 http://172.17.0.1/private/ stretch-staging/main libxft2 armhf 2.3.2-1 [48.3 kB]
Get:84 http://172.17.0.1/private/ stretch-staging/main libxss1 armhf 1:1.2.2-1 [16.8 kB]
Get:85 http://172.17.0.1/private/ stretch-staging/main libtk8.6 armhf 8.6.4+dfsg-2 [664 kB]
Get:86 http://172.17.0.1/private/ stretch-staging/main libunistring0 armhf 0.9.3-5.2 [253 kB]
Get:87 http://172.17.0.1/private/ stretch-staging/main libxt6 armhf 1:1.1.4-1 [183 kB]
Get:88 http://172.17.0.1/private/ stretch-staging/main bzip2 armhf 1.0.6-8 [45.1 kB]
Get:89 http://172.17.0.1/private/ stretch-staging/main libbz2-1.0 armhf 1.0.6-8 [42.0 kB]
Get:90 http://172.17.0.1/private/ stretch-staging/main libssl1.0.0 armhf 1.0.2d-1 [882 kB]
Get:91 http://172.17.0.1/private/ stretch-staging/main file armhf 1:5.22+15-2 [59.9 kB]
Get:92 http://172.17.0.1/private/ stretch-staging/main gettext-base armhf 0.19.4-1 [117 kB]
Get:93 http://172.17.0.1/private/ stretch-staging/main libsqlite3-0 armhf 3.8.10.2-1 [389 kB]
Get:94 http://172.17.0.1/private/ stretch-staging/main openssl armhf 1.0.2d-1 [683 kB]
Get:95 http://172.17.0.1/private/ stretch-staging/main ca-certificates all 20150426 [208 kB]
Get:96 http://172.17.0.1/private/ stretch-staging/main cdbs all 0.4.130 [76.4 kB]
Get:97 http://172.17.0.1/private/ stretch-staging/main cpp armhf 4:4.9.2-4+rpi1 [17.8 kB]
Get:98 http://172.17.0.1/private/ stretch-staging/main gettext armhf 0.19.4-1 [1168 kB]
Get:99 http://172.17.0.1/private/ stretch-staging/main intltool-debian all 0.35.0+20060710.2 [25.9 kB]
Get:100 http://172.17.0.1/private/ stretch-staging/main po-debconf all 1.0.18 [248 kB]
Get:101 http://172.17.0.1/private/ stretch-staging/main debhelper all 9.20150628 [817 kB]
Get:102 http://172.17.0.1/private/ stretch-staging/main gcc armhf 4:4.9.2-4+rpi1 [5134 B]
Get:103 http://172.17.0.1/private/ stretch-staging/main libgfortran-4.9-dev armhf 4.9.3-1 [179 kB]
Get:104 http://172.17.0.1/private/ stretch-staging/main gfortran-4.9 armhf 4.9.3-1 [4528 kB]
Get:105 http://172.17.0.1/private/ stretch-staging/main gfortran armhf 4:4.9.2-4+rpi1 [1290 B]
Get:106 http://172.17.0.1/private/ stretch-staging/main libblas-common armhf 1.2.20110419-10 [8494 B]
Get:107 http://172.17.0.1/private/ stretch-staging/main libblas3 armhf 1.2.20110419-10 [120 kB]
Get:108 http://172.17.0.1/private/ stretch-staging/main libblas-dev armhf 1.2.20110419-10 [117 kB]
Get:109 http://172.17.0.1/private/ stretch-staging/main libbz2-dev armhf 1.0.6-8 [27.8 kB]
Get:110 http://172.17.0.1/private/ stretch-staging/main librtmp1 armhf 2.4+20150115.gita107cef-1+b1 [54.5 kB]
Get:111 http://172.17.0.1/private/ stretch-staging/main libcurl3 armhf 7.43.0-1 [238 kB]
Get:112 http://172.17.0.1/private/ stretch-staging/main libjpeg62-turbo-dev armhf 1:1.4.0-7 [414 kB]
Get:113 http://172.17.0.1/private/ stretch-staging/main libjpeg-dev all 1:1.4.0-7 [50.8 kB]
Get:114 http://172.17.0.1/private/ stretch-staging/main liblapack3 armhf 3.5.0-4 [1316 kB]
Get:115 http://172.17.0.1/private/ stretch-staging/main liblapack-dev armhf 3.5.0-4 [1364 kB]
Get:116 http://172.17.0.1/private/ stretch-staging/main liblzma-dev armhf 5.1.1alpha+20120614-2.1 [248 kB]
Get:117 http://172.17.0.1/private/ stretch-staging/main libtinfo-dev armhf 5.9+20150516-2 [66.0 kB]
Get:118 http://172.17.0.1/private/ stretch-staging/main libncurses5-dev armhf 5.9+20150516-2 [154 kB]
Get:119 http://172.17.0.1/private/ stretch-staging/main libpaper-utils armhf 1.1.24+nmu4 [17.2 kB]
Get:120 http://172.17.0.1/private/ stretch-staging/main libpcre16-3 armhf 2:8.35-7 [221 kB]
Get:121 http://172.17.0.1/private/ stretch-staging/main libpcre32-3 armhf 2:8.35-7 [214 kB]
Get:122 http://172.17.0.1/private/ stretch-staging/main libpcre3-dev armhf 2:8.35-7 [550 kB]
Get:123 http://172.17.0.1/private/ stretch-staging/main zlib1g-dev armhf 1:1.2.8.dfsg-2 [199 kB]
Get:124 http://172.17.0.1/private/ stretch-staging/main libpng12-dev armhf 1.2.50-2 [236 kB]
Get:125 http://172.17.0.1/private/ stretch-staging/main libreadline6-dev armhf 6.3-8 [105 kB]
Get:126 http://172.17.0.1/private/ stretch-staging/main libreadline-dev armhf 6.3-8 [994 B]
Get:127 http://172.17.0.1/private/ stretch-staging/main zip armhf 3.0-10 [212 kB]
Get:128 http://172.17.0.1/private/ stretch-staging/main unzip armhf 6.0-17 [143 kB]
Get:129 http://172.17.0.1/private/ stretch-staging/main xdg-utils all 1.1.0~rc1+git20111210-7.4 [65.0 kB]
Get:130 http://172.17.0.1/private/ stretch-staging/main r-base-core armhf 3.2.1-4 [20.1 MB]
Get:131 http://172.17.0.1/private/ stretch-staging/main littler armhf 0.2.3-2 [38.5 kB]
Get:132 http://172.17.0.1/private/ stretch-staging/main r-base-dev all 3.2.1-4 [4288 B]
Get:133 http://172.17.0.1/private/ stretch-staging/main r-bioc-biocgenerics all 0.14.0-1 [440 kB]
Get:134 http://172.17.0.1/private/ stretch-staging/main r-bioc-biobase armhf 2.28.0-1 [1990 kB]
Get:135 http://172.17.0.1/private/ stretch-staging/main r-cran-checkmate armhf 1.6.0-1 [268 kB]
Get:136 http://172.17.0.1/private/ stretch-staging/main r-cran-bbmisc armhf 1.9-1 [279 kB]
Get:137 http://172.17.0.1/private/ stretch-staging/main r-cran-brew armhf 1.0-6-1 [61.3 kB]
Get:138 http://172.17.0.1/private/ stretch-staging/main r-cran-digest armhf 0.6.8-1 [89.7 kB]
Get:139 http://172.17.0.1/private/ stretch-staging/main r-cran-dbi armhf 0.3.1-1 [156 kB]
Get:140 http://172.17.0.1/private/ stretch-staging/main r-cran-rsqlite armhf 1.0.0-1 [298 kB]
Get:141 http://172.17.0.1/private/ stretch-staging/main r-cran-pkgkitten all 0.1.3-1 [18.3 kB]
Get:142 http://172.17.0.1/private/ stretch-staging/main r-cran-rcpp armhf 0.11.6-1 [2104 kB]
Get:143 http://172.17.0.1/private/ stretch-staging/main r-cran-plyr armhf 1.8.3-1 [728 kB]
Get:144 http://172.17.0.1/private/ stretch-staging/main r-cran-stringr all 0.6.2-2 [71.8 kB]
Get:145 http://172.17.0.1/private/ stretch-staging/main r-cran-base64enc armhf 0.1-2-1 [19.6 kB]
Get:146 http://172.17.0.1/private/ stretch-staging/main r-cran-sendmailr armhf 1.2-1-1 [29.0 kB]
Get:147 http://172.17.0.1/private/ stretch-staging/main r-cran-fail armhf 1.2-1 [42.6 kB]
Get:148 http://172.17.0.1/private/ stretch-staging/main r-cran-batchjobs armhf 1.6-1 [422 kB]
Get:149 http://172.17.0.1/private/ stretch-staging/main r-cran-codetools all 0.2-11-1 [46.4 kB]
Get:150 http://172.17.0.1/private/ stretch-staging/main r-cran-iterators all 1.0.7-1 [306 kB]
Get:151 http://172.17.0.1/private/ stretch-staging/main r-cran-foreach all 1.4.2-1 [371 kB]
Get:152 http://172.17.0.1/private/ stretch-staging/main r-cran-lambda.r all 1.1.7-2 [66.3 kB]
Get:153 http://172.17.0.1/private/ stretch-staging/main r-cran-futile.options all 1.0.0-2 [15.4 kB]
Get:154 http://172.17.0.1/private/ stretch-staging/main r-cran-futile.logger all 1.4.1-1 [84.4 kB]
Get:155 http://172.17.0.1/private/ stretch-staging/main r-cran-snow all 1:0.3.13-1 [66.7 kB]
Get:156 http://172.17.0.1/private/ stretch-staging/main r-bioc-biocparallel all 1.2.6-1 [600 kB]
Get:157 http://172.17.0.1/private/ stretch-staging/main r-bioc-s4vectors armhf 0.6.0-1 [734 kB]
Get:158 http://172.17.0.1/private/ stretch-staging/main r-bioc-iranges armhf 2.2.4-1 [1528 kB]
Get:159 http://172.17.0.1/private/ stretch-staging/main r-bioc-xvector armhf 0.8.0-1 [318 kB]
Get:160 http://172.17.0.1/private/ stretch-staging/main r-bioc-biostrings armhf 2.36.1-1 [13.5 MB]
Get:161 http://172.17.0.1/private/ stretch-staging/main r-bioc-genomeinfodb all 1.4.1-1 [431 kB]
Get:162 http://172.17.0.1/private/ stretch-staging/main r-cran-bitops armhf 1.0-6-1 [23.6 kB]
Get:163 http://172.17.0.1/private/ stretch-staging/main r-bioc-genomicranges armhf 1.20.5-1 [1428 kB]
Get:164 http://172.17.0.1/private/ stretch-staging/main r-bioc-rsamtools armhf 1.20.4-1 [3171 kB]
Get:165 http://172.17.0.1/private/ stretch-staging/main r-bioc-genomicalignments armhf 1.4.1-1 [1274 kB]
Get:166 http://172.17.0.1/private/ stretch-staging/main r-cran-hwriter all 1.3.2-1 [137 kB]
Get:167 http://172.17.0.1/private/ stretch-staging/main r-cran-lattice armhf 0.20-31-1 [713 kB]
Get:168 http://172.17.0.1/private/ stretch-staging/main r-cran-rcolorbrewer all 1.1-2-1 [26.0 kB]
Get:169 http://172.17.0.1/private/ stretch-staging/main r-cran-latticeextra armhf 0.6-26-1 [1469 kB]
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Setting up libpipeline1:armhf (1.4.0-1) ...
Setting up groff-base (1.22.3-1) ...
Setting up bsdmainutils (9.0.6) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
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Not building database; man-db/auto-update is not 'true'.
Setting up libasprintf0c2:armhf (0.19.4-1) ...
Setting up libkeyutils1:armhf (1.5.9-5) ...
Setting up libkrb5support0:armhf (1.12.1+dfsg-20) ...
Setting up libk5crypto3:armhf (1.12.1+dfsg-20) ...
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Setting up libidn11:armhf (1.30-1) ...
Setting up libnettle6:armhf (3.1.1-3) ...
Setting up libhogweed4:armhf (3.1.1-3) ...
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Setting up libtasn1-6:armhf (4.5-2) ...
Setting up libgnutls-deb0-28:armhf (3.3.15-7) ...
Setting up libsasl2-modules-db:armhf (2.1.26.dfsg1-13) ...
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Setting up libldap-2.4-2:armhf (2.4.40+dfsg-2+rpi1) ...
Setting up libmagic1:armhf (1:5.22+15-2) ...
Setting up libxml2:armhf (2.9.1+dfsg1-5) ...
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Setting up fontconfig (2.11.0-6.3) ...
Regenerating fonts cache... done.
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Setting up libmpfr4:armhf (3.1.3-1) ...
Setting up gcc-4.9-base:armhf (4.9.3-1) ...
Setting up cpp-4.9 (4.9.3-1) ...
Setting up libgomp1:armhf (5.1.1-12+rpi1) ...
Setting up libatomic1:armhf (5.1.1-12+rpi1) ...
Setting up libasan1:armhf (4.9.3-1) ...
Setting up libubsan0:armhf (5.1.1-12+rpi1) ...
Setting up libgcc-4.9-dev:armhf (4.9.3-1) ...
Setting up gcc-4.9 (4.9.3-1) ...
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Setting up g++-4.9 (4.9.3-1) ...
Setting up libglib2.0-0:armhf (2.44.1-1.1) ...
No schema files found: doing nothing.
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Setting up libgfortran3:armhf (5.1.1-12+rpi1) ...
Setting up libgraphite2-3:armhf (1.2.4-3) ...
Setting up x11-common (1:7.7+9) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libice6:armhf (2:1.0.9-1) ...
Setting up libjbig0:armhf (2.1-3.1) ...
Setting up libthai-data (0.1.22-2) ...
Setting up libdatrie1:armhf (0.2.9-2) ...
Setting up libthai0:armhf (0.1.22-2) ...
Setting up libpango-1.0-0:armhf (1.36.8-3) ...
Setting up libpixman-1-0:armhf (0.32.6-3) ...
Setting up libxau6:armhf (1:1.0.8-1) ...
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Setting up libx11-data (2:1.6.3-1) ...
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Setting up libxcb-render0:armhf (1.10-3) ...
Setting up libxcb-shm0:armhf (1.10-3) ...
Setting up libxext6:armhf (2:1.3.3-1) ...
Setting up libxrender1:armhf (1:0.9.8-1) ...
Setting up libcairo2:armhf (1.14.2-2) ...
Setting up libharfbuzz0b:armhf (0.9.41-1) ...
Setting up libpangoft2-1.0-0:armhf (1.36.8-3) ...
Setting up libpangocairo-1.0-0:armhf (1.36.8-3) ...
Setting up libpaper1:armhf (1.1.24+nmu4) ...

Creating config file /etc/papersize with new version
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Setting up libssh2-1:armhf (1.5.0-2) ...
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Setting up libtk8.6:armhf (8.6.4+dfsg-2) ...
Setting up libunistring0:armhf (0.9.3-5.2) ...
Setting up libxt6:armhf (1:1.1.4-1) ...
Setting up bzip2 (1.0.6-8) ...
Setting up libssl1.0.0:armhf (1.0.2d-1) ...
Setting up file (1:5.22+15-2) ...
Setting up gettext-base (0.19.4-1) ...
Setting up libsqlite3-0:armhf (3.8.10.2-1) ...
Setting up openssl (1.0.2d-1) ...
Setting up ca-certificates (20150426) ...
Setting up cdbs (0.4.130) ...
Setting up cpp (4:4.9.2-4+rpi1) ...
Setting up gettext (0.19.4-1) ...
Setting up intltool-debian (0.35.0+20060710.2) ...
Setting up po-debconf (1.0.18) ...
Setting up debhelper (9.20150628) ...
Setting up gcc (4:4.9.2-4+rpi1) ...
Setting up libgfortran-4.9-dev:armhf (4.9.3-1) ...
Setting up gfortran-4.9 (4.9.3-1) ...
Setting up gfortran (4:4.9.2-4+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libblas-common (1.2.20110419-10) ...
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update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (1.2.20110419-10) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libbz2-dev:armhf (1.0.6-8) ...
Setting up librtmp1:armhf (2.4+20150115.gita107cef-1+b1) ...
Setting up libcurl3:armhf (7.43.0-1) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.4.0-7) ...
Setting up libjpeg-dev (1:1.4.0-7) ...
Setting up liblapack3 (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up liblapack-dev (3.5.0-4) ...
update-alternatives: using /usr/lib/lapack/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Setting up liblzma-dev:armhf (5.1.1alpha+20120614-2.1) ...
Setting up libtinfo-dev:armhf (5.9+20150516-2) ...
Setting up libncurses5-dev:armhf (5.9+20150516-2) ...
Setting up libpaper-utils (1.1.24+nmu4) ...
Setting up libpcre16-3:armhf (2:8.35-7) ...
Setting up libpcre32-3:armhf (2:8.35-7) ...
Setting up libpcre3-dev:armhf (2:8.35-7) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-2) ...
Setting up libpng12-dev:armhf (1.2.50-2) ...
Setting up libreadline6-dev:armhf (6.3-8) ...
Setting up libreadline-dev:armhf (6.3-8) ...
Setting up zip (3.0-10) ...
Setting up unzip (6.0-17) ...
Setting up xdg-utils (1.1.0~rc1+git20111210-7.4) ...
Setting up r-base-core (3.2.1-4) ...

Creating config file /etc/R/Renviron with new version
Setting up littler (0.2.3-2) ...
Setting up r-base-dev (3.2.1-4) ...
Setting up r-bioc-biocgenerics (0.14.0-1) ...
Setting up r-bioc-biobase (2.28.0-1) ...
Setting up r-cran-checkmate (1.6.0-1) ...
Setting up r-cran-bbmisc (1.9-1) ...
Setting up r-cran-brew (1.0-6-1) ...
Setting up r-cran-digest (0.6.8-1) ...
Setting up r-cran-dbi (0.3.1-1) ...
Setting up r-cran-rsqlite (1.0.0-1) ...
Setting up r-cran-pkgkitten (0.1.3-1) ...
Setting up r-cran-rcpp (0.11.6-1) ...
Setting up r-cran-plyr (1.8.3-1) ...
Setting up r-cran-stringr (0.6.2-2) ...
Setting up r-cran-base64enc (0.1-2-1) ...
Setting up r-cran-sendmailr (1.2-1-1) ...
Setting up r-cran-fail (1.2-1) ...
Setting up r-cran-batchjobs (1.6-1) ...
Setting up r-cran-codetools (0.2-11-1) ...
Setting up r-cran-iterators (1.0.7-1) ...
Setting up r-cran-foreach (1.4.2-1) ...
Setting up r-cran-lambda.r (1.1.7-2) ...
Setting up r-cran-futile.options (1.0.0-2) ...
Setting up r-cran-futile.logger (1.4.1-1) ...
Setting up r-cran-snow (1:0.3.13-1) ...
Setting up r-bioc-biocparallel (1.2.6-1) ...
Setting up r-bioc-s4vectors (0.6.0-1) ...
Setting up r-bioc-iranges (2.2.4-1) ...
Setting up r-bioc-xvector (0.8.0-1) ...
Setting up r-bioc-biostrings (2.36.1-1) ...
Setting up r-bioc-genomeinfodb (1.4.1-1) ...
Setting up r-cran-bitops (1.0-6-1) ...
Setting up r-bioc-genomicranges (1.20.5-1) ...
Setting up r-bioc-rsamtools (1.20.4-1) ...
Setting up r-bioc-genomicalignments (1.4.1-1) ...
Setting up r-cran-hwriter (1.3.2-1) ...
Setting up r-cran-lattice (0.20-31-1) ...
Setting up r-cran-rcolorbrewer (1.1-2-1) ...
Setting up r-cran-latticeextra (0.6-26-1) ...
Setting up sbuild-build-depends-r-bioc-shortread-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.19-18) ...
Processing triggers for systemd (215-17) ...
Processing triggers for ca-certificates (20150426) ...
Updating certificates in /etc/ssl/certs...
180 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build environment                                                            │
└──────────────────────────────────────────────────────────────────────────────┘

Kernel: Linux 3.19.0-trunk-armmp armhf (armv7l)
Toolchain package versions: binutils_2.25-5 dpkg-dev_1.17.25 g++-4.9_4.9.3-1 gcc-4.9_4.9.3-1 libc6-dev_2.19-18 libstdc++-4.9-dev_4.9.3-1 libstdc++6_5.1.1-12+rpi1 linux-libc-dev_3.16.7-ckt4-1+rpi1
Package versions: acl_2.2.52-2 adduser_3.113+nmu3 apt_1.0.9.8 base-files_8+rpi1 base-passwd_3.5.37 bash_4.3-11 binutils_2.25-5 bsdmainutils_9.0.6 bsdutils_1:2.25.2-6 build-essential_11.7 bzip2_1.0.6-8 ca-certificates_20150426 cdbs_0.4.130 coreutils_8.23-4 cpio_2.11+dfsg-4.1 cpp_4:4.9.2-4+rpi1 cpp-4.9_4.9.3-1 dash_0.5.7-4 debconf_1.5.56 debconf-i18n_1.5.56 debfoster_2.7-2 debhelper_9.20150628 debianutils_4.4 diffutils_1:3.3-1 dmsetup_2:1.02.90-2.2 dpkg_1.17.25 dpkg-dev_1.17.25 e2fslibs_1.42.12-1.1 e2fsprogs_1.42.12-1.1 fakeroot_1.20.2-1 file_1:5.22+15-2 findutils_4.4.2-9 fontconfig_2.11.0-6.3 fontconfig-config_2.11.0-6.3 fonts-dejavu-core_2.35-1 g++_4:4.9.2-2 g++-4.9_4.9.3-1 gcc_4:4.9.2-4+rpi1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.4-1 gcc-4.9_4.9.3-1 gcc-4.9-base_4.9.3-1 gcc-5-base_5.1.1-12+rpi1 gettext_0.19.4-1 gettext-base_0.19.4-1 gfortran_4:4.9.2-4+rpi1 gfortran-4.9_4.9.3-1 gnupg_1.4.18-7 gpgv_1.4.18-7 grep_2.20-4.1 groff-base_1.22.3-1 gzip_1.6-4 hostname_3.15 init_1.22 init-system-helpers_1.22 initramfs-tools_0.120 initscripts_2.88dsf-59 insserv_1.14.0-5 intltool-debian_0.35.0+20060710.2 klibc-utils_2.0.4-2+rpi1 kmod_18-3 libacl1_2.2.52-2 libapt-pkg4.12_1.0.9.8 libasan1_4.9.3-1 libasprintf0c2_0.19.4-1 libatomic1_5.1.1-12+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.4-1 libaudit1_1:2.4-1 libblas-common_1.2.20110419-10 libblas-dev_1.2.20110419-10 libblas3_1.2.20110419-10 libblkid1_2.25.2-6 libbz2-1.0_1.0.6-8 libbz2-dev_1.0.6-8 libc-bin_2.19-18 libc-dev-bin_2.19-18 libc6_2.19-18 libc6-dev_2.19-18 libcairo2_1.14.2-2 libcap2_1:2.24-8 libcap2-bin_1:2.24-8 libcloog-isl4_0.18.2-1 libcomerr2_1.42.12-1.1 libcroco3_0.6.8-3 libcryptsetup4_2:1.6.6-5 libcurl3_7.43.0-1 libdatrie1_0.2.9-2 libdb5.3_5.3.28-9 libdbus-1-3_1.8.16-1 libdebconfclient0_0.192 libdevmapper1.02.1_2:1.02.90-2.2 libdpkg-perl_1.17.25 libdrm2_2.4.58-2 libexpat1_2.1.0-6 libfakeroot_1.20.2-1 libffi6_3.1-2 libfontconfig1_2.11.0-6.3 libfreetype6_2.5.2-4 libgc1c2_1:7.2d-6.4 libgcc-4.9-dev_4.9.3-1 libgcc1_1:5.1.1-12+rpi1 libgcrypt20_1.6.3-2 libgdbm3_1.8.3-13.1 libgfortran-4.9-dev_4.9.3-1 libgfortran3_5.1.1-12+rpi1 libglib2.0-0_2.44.1-1.1 libgmp10_2:6.0.0+dfsg-6+rpi1 libgnutls-deb0-28_3.3.15-7 libgomp1_5.1.1-12+rpi1 libgpg-error0_1.17-3 libgraphite2-3_1.2.4-3 libgssapi-krb5-2_1.12.1+dfsg-20 libharfbuzz0b_0.9.41-1 libhogweed4_3.1.1-3 libice6_2:1.0.9-1 libidn11_1.30-1 libisl10_0.12.2-2 libisl13_0.14-2 libjbig0_2.1-3.1 libjpeg-dev_1:1.4.0-7 libjpeg62-turbo_1:1.4.0-7 libjpeg62-turbo-dev_1:1.4.0-7 libk5crypto3_1.12.1+dfsg-20 libkeyutils1_1.5.9-5 libklibc_2.0.4-2+rpi1 libkmod2_18-3 libkrb5-3_1.12.1+dfsg-20 libkrb5support0_1.12.1+dfsg-20 liblapack-dev_3.5.0-4 liblapack3_3.5.0-4 libldap-2.4-2_2.4.40+dfsg-2+rpi1 liblocale-gettext-perl_1.05-8+b1 liblzma-dev_5.1.1alpha+20120614-2.1 liblzma5_5.1.1alpha+20120614-2.1 libmagic1_1:5.22+15-2 libmount1_2.25.2-6 libmpc3_1.0.2-1 libmpfr4_3.1.3-1 libncurses5_5.9+20150516-2 libncurses5-dev_5.9+20150516-2 libncursesw5_5.9+20150516-2 libnettle6_3.1.1-3 libnih-dbus1_1.0.3-4.3 libnih1_1.0.3-4.3 libp11-kit0_0.23.1-2 libpam-modules_1.1.8-3.1 libpam-modules-bin_1.1.8-3.1 libpam-runtime_1.1.8-3.1 libpam0g_1.1.8-3.1 libpango-1.0-0_1.36.8-3 libpangocairo-1.0-0_1.36.8-3 libpangoft2-1.0-0_1.36.8-3 libpaper-utils_1.1.24+nmu4 libpaper1_1.1.24+nmu4 libpcre16-3_2:8.35-7 libpcre3_2:8.35-7 libpcre3-dev_2:8.35-7 libpcre32-3_2:8.35-7 libpcrecpp0_2:8.35-7 libpipeline1_1.4.0-1 libpixman-1-0_0.32.6-3 libpng12-0_1.2.50-2 libpng12-dev_1.2.50-2 libprocps3_2:3.3.9-9 libreadline-dev_6.3-8 libreadline6_6.3-8 libreadline6-dev_6.3-8 librtmp1_2.4+20150115.gita107cef-1+b1 libsasl2-2_2.1.26.dfsg1-13 libsasl2-modules-db_2.1.26.dfsg1-13 libselinux1_2.3-2 libsemanage-common_2.3-1 libsemanage1_2.3-1 libsepol1_2.3-2 libslang2_2.3.0-2 libsm6_2:1.2.2-1 libsmartcols1_2.25.2-6 libsqlite3-0_3.8.10.2-1 libss2_1.42.12-1.1 libssh2-1_1.5.0-2 libssl1.0.0_1.0.2d-1 libstdc++-4.9-dev_4.9.3-1 libstdc++6_5.1.1-12+rpi1 libsystemd0_215-17 libtasn1-6_4.5-2 libtcl8.6_8.6.4+dfsg-2 libtext-charwidth-perl_0.04-7+b4 libtext-iconv-perl_1.7-5+b5 libtext-wrapi18n-perl_0.06-7 libthai-data_0.1.22-2 libthai0_0.1.22-2 libtiff5_4.0.3-13 libtimedate-perl_2.3000-2 libtinfo-dev_5.9+20150516-2 libtinfo5_5.9+20150516-2 libtk8.6_8.6.4+dfsg-2 libubsan0_5.1.1-12+rpi1 libudev1_215-17 libunistring0_0.9.3-5.2 libusb-0.1-4_2:0.1.12-25 libustr-1.0-1_1.0.4-3 libuuid1_2.25.2-6 libx11-6_2:1.6.3-1 libx11-data_2:1.6.3-1 libxau6_1:1.0.8-1 libxcb-render0_1.10-3 libxcb-shm0_1.10-3 libxcb1_1.10-3 libxdmcp6_1:1.1.2-1 libxext6_2:1.3.3-1 libxft2_2.3.2-1 libxml2_2.9.1+dfsg1-5 libxrender1_1:0.9.8-1 libxss1_1:1.2.2-1 libxt6_1:1.1.4-1 linux-libc-dev_3.16.7-ckt4-1+rpi1 littler_0.2.3-2 login_1:4.2-3 lsb-base_4.1+Debian13+rpi1+nmu1 make_4.0-8.1 makedev_2.3.1-93 man-db_2.7.0.2-5 mawk_1.3.3-17 mount_2.25.2-6 mountall_2.54 multiarch-support_2.19-18 ncurses-base_5.9+20140913-1 ncurses-bin_5.9+20150516-2 openssl_1.0.2d-1 passwd_1:4.2-3 patch_2.7.5-1 perl_5.20.2-3 perl-base_5.20.2-3 perl-modules_5.20.2-3 plymouth_0.9.0-9 po-debconf_1.0.18 procps_2:3.3.9-9 r-base-core_3.2.1-4 r-base-dev_3.2.1-4 r-bioc-biobase_2.28.0-1 r-bioc-biocgenerics_0.14.0-1 r-bioc-biocparallel_1.2.6-1 r-bioc-biostrings_2.36.1-1 r-bioc-genomeinfodb_1.4.1-1 r-bioc-genomicalignments_1.4.1-1 r-bioc-genomicranges_1.20.5-1 r-bioc-iranges_2.2.4-1 r-bioc-rsamtools_1.20.4-1 r-bioc-s4vectors_0.6.0-1 r-bioc-xvector_0.8.0-1 r-cran-base64enc_0.1-2-1 r-cran-batchjobs_1.6-1 r-cran-bbmisc_1.9-1 r-cran-bitops_1.0-6-1 r-cran-brew_1.0-6-1 r-cran-checkmate_1.6.0-1 r-cran-codetools_0.2-11-1 r-cran-dbi_0.3.1-1 r-cran-digest_0.6.8-1 r-cran-fail_1.2-1 r-cran-foreach_1.4.2-1 r-cran-futile.logger_1.4.1-1 r-cran-futile.options_1.0.0-2 r-cran-hwriter_1.3.2-1 r-cran-iterators_1.0.7-1 r-cran-lambda.r_1.1.7-2 r-cran-lattice_0.20-31-1 r-cran-latticeextra_0.6-26-1 r-cran-pkgkitten_0.1.3-1 r-cran-plyr_1.8.3-1 r-cran-rcolorbrewer_1.1-2-1 r-cran-rcpp_0.11.6-1 r-cran-rsqlite_1.0.0-1 r-cran-sendmailr_1.2-1-1 r-cran-snow_1:0.3.13-1 r-cran-stringr_0.6.2-2 raspbian-archive-keyring_20120528.2 readline-common_6.3-8 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-shortread-dummy_0.invalid.0 sed_4.2.2-4 sensible-utils_0.0.9 startpar_0.59-3 systemd_215-17 systemd-sysv_215-17 sysv-rc_2.88dsf-59 sysvinit-utils_2.88dsf-59 tar_1.27.1-2 tzdata_2015c-1 ucf_3.0030 udev_215-17 unzip_6.0-17 util-linux_2.25.2-6 x11-common_1:7.7+9 xdg-utils_1.1.0~rc1+git20111210-7.4 xz-utils_5.1.1alpha+20120614-2 zip_3.0-10 zlib1g_1:1.2.8.dfsg-2 zlib1g-dev_1:1.2.8.dfsg-2

┌──────────────────────────────────────────────────────────────────────────────┐
│ Build                                                                        │
└──────────────────────────────────────────────────────────────────────────────┘


Unpack source
─────────────

gpgv: keyblock resource `/sbuild-nonexistent/.gnupg/trustedkeys.gpg': file open error
gpgv: Signature made Sat Jun 27 17:22:01 2015 UTC using RSA key ID D1C646D1
gpgv: Can't check signature: public key not found
dpkg-source: warning: failed to verify signature on ./r-bioc-shortread_1.26.0-1.dsc
dpkg-source: info: extracting r-bioc-shortread in r-bioc-shortread-1.26.0
dpkg-source: info: unpacking r-bioc-shortread_1.26.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-shortread_1.26.0-1.debian.tar.xz
dpkg-source: info: applying use_debian_packaged_zlib.patch

Check disc space
────────────────

Sufficient free space for build

User Environment
────────────────

DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=stretch-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=stretch-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=109
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=stretch-staging-armhf-sbuild-90826f9b-aba9-4e6c-a733-9d74f90938dc
SCHROOT_UID=104
SCHROOT_USER=buildd
SHELL=/bin/sh
TERM=linux
USER=buildd

dpkg-buildpackage
─────────────────

dpkg-buildpackage: source package r-bioc-shortread
dpkg-buildpackage: source version 1.26.0-1
dpkg-buildpackage: source distribution unstable
 dpkg-source --before-build r-bioc-shortread-1.26.0
dpkg-buildpackage: host architecture armhf
 fakeroot debian/rules clean
test -x debian/rules
dh_clean 
if test -d src; then				\
		find src -regex ".*\.o" |               \
                        xargs --no-run-if-empty -r rm;          \
	fi
rm -f config.log config.status
 debian/rules build-arch
test -x debian/rules
mkdir -p "."
 fakeroot debian/rules binary-arch
test -x debian/rules
dh_testroot
dh_prep 
dh_installdirs -A 
mkdir -p "."
dh_installdirs		usr/lib/R/site-library
echo "R:Depends=r-base-core (>= 3.2.1-4), r-api-3" >> debian/r-bioc-shortread.substvars
if test -f /usr/bin/xvfb-run; then 			\
		 xvfb-run -a 			\
			R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-shortread/usr/lib/R/site-library --clean     \
				 .   	\
				"--built-timestamp=\"Sat, 27 Jun 2015 19:18:04 +0200\""   	        \
				;                               \
	else							\
		 R CMD INSTALL -l /«PKGBUILDDIR»/debian/r-bioc-shortread/usr/lib/R/site-library 	\
				--clean  .  \
				"--built-timestamp=\"Sat, 27 Jun 2015 19:18:04 +0200\""   	        \
				;                               \
	fi
* installing *source* package 'ShortRead' ...
checking for gcc... gcc
checking whether the C compiler works... yes
checking for C compiler default output file name... a.out
checking for suffix of executables... 
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ISO C89... none needed
checking for gzeof in -lz... yes
checking how to run the C preprocessor... gcc -E
checking for grep that handles long lines and -e... /bin/grep
checking for egrep... /bin/grep -E
checking for ANSI C header files... yes
checking for sys/types.h... yes
checking for sys/stat.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for memory.h... yes
checking for strings.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for unistd.h... yes
checking size of unsigned long... 4
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/«PKGBUILDDIR»/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c R_init_ShortRead.c -o R_init_ShortRead.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c XVector_stubs.c -o XVector_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c alphabet.c -o alphabet.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c io.c -o io.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c io_bowtie.c -o io_bowtie.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c io_soap.c -o io_soap.o
g++ -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c readBfaToc.cc -o readBfaToc.o
g++ -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -DPACKAGE_NAME=\"\" -DPACKAGE_TARNAME=\"\" -DPACKAGE_VERSION=\"\" -DPACKAGE_STRING=\"\" -DPACKAGE_BUGREPORT=\"\" -DPACKAGE_URL=\"\" -DHAVE_LIBZ=1 -DSTDC_HEADERS=1 -DHAVE_SYS_TYPES_H=1 -DHAVE_SYS_STAT_H=1 -DHAVE_STDLIB_H=1 -DHAVE_STRING_H=1 -DHAVE_MEMORY_H=1 -DHAVE_STRINGS_H=1 -DHAVE_INTTYPES_H=1 -DHAVE_STDINT_H=1 -DHAVE_UNISTD_H=1 -DSIZEOF_UNSIGNED_LONG=4 -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c read_maq_map.cc -o read_maq_map.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c sampler.c -o sampler.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c trim.c -o trim.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c util.c -o util.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG   -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -I"/usr/lib/R/site-library/Biostrings/include"  -fopenmp -fpic  -g -O2 -fstack-protector-strong -Wformat -Werror=format-security -D_FORTIFY_SOURCE=2 -g  -c xsnap.c -o xsnap.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o ShortRead.so Biostrings_stubs.o IRanges_stubs.o R_init_ShortRead.o S4Vectors_stubs.o XVector_stubs.o alphabet.o io.o io_bowtie.o io_soap.o readBfaToc.o read_maq_map.o sampler.o trim.o util.o xsnap.o -lz -fopenmp -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/«PKGBUILDDIR»/src'
make[1]: Entering directory '/«PKGBUILDDIR»/src'
make[1]: Leaving directory '/«PKGBUILDDIR»/src'
installing to /«PKGBUILDDIR»/debian/r-bioc-shortread/usr/lib/R/site-library/ShortRead/libs
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (ShortRead)
rm -vf /«PKGBUILDDIR»/debian/r-bioc-shortread/usr/lib/R/site-library/R.css 			\
		/«PKGBUILDDIR»/debian/r-bioc-shortread/usr/lib/R/site-library/ShortRead/COPYING 	\
		/«PKGBUILDDIR»/debian/r-bioc-shortread/usr/lib/R/site-library/ShortRead/LICENSE.txt
if test -f debian/overrides; then 		\
		install -d /«PKGBUILDDIR»/debian/r-bioc-shortread/usr/share/lintian/overrides ; 		\
		install -m 0644 debian/overrides 	\
			/«PKGBUILDDIR»/debian/r-bioc-shortread/usr/share/lintian/overrides/r-bioc-shortread; 	\
	fi
Adding cdbs dependencies to debian/r-bioc-shortread.substvars
dh_installdirs -pr-bioc-shortread 
dh_installdocs -pr-bioc-shortread ./NEWS 
dh_installexamples -pr-bioc-shortread 
dh_installman -pr-bioc-shortread  
dh_installinfo -pr-bioc-shortread  
dh_installmenu -pr-bioc-shortread 
dh_installcron -pr-bioc-shortread 
dh_installinit -pr-bioc-shortread  
dh_installdebconf -pr-bioc-shortread 
dh_installemacsen -pr-bioc-shortread   
dh_installcatalogs -pr-bioc-shortread 
dh_installpam -pr-bioc-shortread 
dh_installlogrotate -pr-bioc-shortread 
dh_installlogcheck -pr-bioc-shortread 
dh_installchangelogs -pr-bioc-shortread  
dh_installudev -pr-bioc-shortread 
dh_lintian -pr-bioc-shortread 
dh_bugfiles -pr-bioc-shortread 
dh_install -pr-bioc-shortread  
dh_link -pr-bioc-shortread  
dh_installmime -pr-bioc-shortread 
dh_installgsettings -pr-bioc-shortread 
dh_strip -pr-bioc-shortread  
dh_compress -pr-bioc-shortread  
dh_fixperms -pr-bioc-shortread  
dh_makeshlibs -pr-bioc-shortread  
dh_installdeb -pr-bioc-shortread 
dh_perl -pr-bioc-shortread 
dh_shlibdeps -pr-bioc-shortread    
dh_gencontrol -pr-bioc-shortread  
dpkg-gencontrol: warning: File::FcntlLock not available; using flock which is not NFS-safe
dh_md5sums -pr-bioc-shortread 
dh_builddeb -pr-bioc-shortread 
dpkg-deb: building package `r-bioc-shortread' in `../r-bioc-shortread_1.26.0-1_armhf.deb'.
 dpkg-genchanges -B -mRaspbian wandboard test autobuilder <root@raspbian.org> >../r-bioc-shortread_1.26.0-1_armhf.changes
dpkg-genchanges: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build r-bioc-shortread-1.26.0
dpkg-buildpackage: binary-only upload (no source included)
────────────────────────────────────────────────────────────────────────────────
Build finished at 20150714-2130

Finished
────────

I: Built successfully

┌──────────────────────────────────────────────────────────────────────────────┐
│ Post Build Chroot                                                            │
└──────────────────────────────────────────────────────────────────────────────┘


┌──────────────────────────────────────────────────────────────────────────────┐
│ Changes                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘


r-bioc-shortread_1.26.0-1_armhf.changes:
────────────────────────────────────────

Format: 1.8
Date: Sat, 27 Jun 2015 19:18:04 +0200
Source: r-bioc-shortread
Binary: r-bioc-shortread
Architecture: armhf
Version: 1.26.0-1
Distribution: stretch-staging
Urgency: medium
Maintainer: Raspbian wandboard test autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-bioc-shortread - GNU R classes and methods for high-throughput short-read sequenci
Closes: 789985
Changes:
 r-bioc-shortread (1.26.0-1) unstable; urgency=medium
 .
   * New upstream version
     Closes: #789985
Checksums-Sha1:
 1b963726087bcf6ba21f2013264a0c457f9bb146 4176556 r-bioc-shortread_1.26.0-1_armhf.deb
Checksums-Sha256:
 d4beae63d74728cee78fc2a47d5a2af4fe4766269232ccfaa7783bb63042b2b5 4176556 r-bioc-shortread_1.26.0-1_armhf.deb
Files:
 5e584aa1b38b07e805ec04e1b967e454 4176556 gnu-r optional r-bioc-shortread_1.26.0-1_armhf.deb

┌──────────────────────────────────────────────────────────────────────────────┐
│ Package contents                                                             │
└──────────────────────────────────────────────────────────────────────────────┘


r-bioc-shortread_1.26.0-1_armhf.deb
───────────────────────────────────

 new debian package, version 2.0.
 size 4176556 bytes: control archive=4608 bytes.
     978 bytes,    16 lines      control              
   10895 bytes,   114 lines      md5sums              
 Package: r-bioc-shortread
 Version: 1.26.0-1
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 5817
 Depends: r-base-core (>= 3.2.1-4), r-api-3, libc6 (>= 2.7), libgcc1 (>= 1:4.4.0), libgomp1 (>= 4.9), libstdc++6 (>= 4.3.0), zlib1g (>= 1:1.1.4), r-cran-latticeextra, r-bioc-biobase (>= 2.26.0), r-bioc-genomicalignments (>= 1.4.1), r-cran-hwriter
 Section: gnu-r
 Priority: optional
 Homepage: http://www.bioconductor.org/packages/release/bioc/html/ShortRead.html
 Description: GNU R classes and methods for high-throughput short-read sequencing data
  This BioConductor module is a package for input, quality assessment,
  manipulation and output of high-throughput sequencing data. ShortRead is
  provided in the R and Bioconductor environments, allowing ready access
  to additional facilities for advanced statistical analysis, data
  transformation, visualization and integration with diverse genomic
  resources.

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│ Post Build                                                                   │
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│ Cleanup                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Purging /«BUILDDIR»
Not cleaning session: cloned chroot in use

┌──────────────────────────────────────────────────────────────────────────────┐
│ Summary                                                                      │
└──────────────────────────────────────────────────────────────────────────────┘

Build Architecture: armhf
Build-Space: 18652
Build-Time: 229
Distribution: stretch-staging
Host Architecture: armhf
Install-Time: 1082
Job: r-bioc-shortread_1.26.0-1
Machine Architecture: armhf
Package: r-bioc-shortread
Package-Time: 1384
Source-Version: 1.26.0-1
Space: 18652
Status: successful
Version: 1.26.0-1
────────────────────────────────────────────────────────────────────────────────
Finished at 20150714-2130
Build needed 00:23:04, 18652k disc space
Raspbian Package Auto-Building

Build log for r-bioc-shortread (1.26.0-1) on armhf
