Build log for r-bioc-rtracklayer (1.62.0-1) on armhf

r-bioc-rtracklayer → 1.62.0-1 → armhf → 2023-12-17 23:09:04

sbuild (Debian sbuild) 0.78.1 (09 February 2019) on test2019

+==============================================================================+
| r-bioc-rtracklayer 1.62.0-1 (armhf)          Sun, 17 Dec 2023 22:38:20 +0000 |
+==============================================================================+

Package: r-bioc-rtracklayer
Version: 1.62.0-1
Source Version: 1.62.0-1
Distribution: trixie-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-08d2e855-bdfa-4834-8254-a6246427af4a' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rtracklayer-HoZdSl/resolver-o1e8yN' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.3 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [15.0 MB]
Fetched 29.3 MB in 12s (2543 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-rtracklayer' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-rtracklayer.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-rtracklayer.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 4049 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-rtracklayer 1.62.0-1 (dsc) [2398 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-rtracklayer 1.62.0-1 (tar) [4019 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-rtracklayer 1.62.0-1 (diff) [27.2 kB]
Fetched 4049 kB in 1s (6009 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rtracklayer-HoZdSl/r-bioc-rtracklayer-1.62.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rtracklayer-HoZdSl' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomicranges, r-cran-xml, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-xvector, r-bioc-genomeinfodb, r-bioc-biostrings, r-bioc-zlibbioc, r-cran-rcurl, r-bioc-rsamtools, r-bioc-genomicalignments, r-bioc-biocio, r-cran-restfulr, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomicranges, r-cran-xml, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-xvector, r-bioc-genomeinfodb, r-bioc-biostrings, r-bioc-zlibbioc, r-cran-rcurl, r-bioc-rsamtools, r-bioc-genomicalignments, r-bioc-biocio, r-cran-restfulr, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [476 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [559 B]
Fetched 1992 B in 0s (52.0 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
  krb5-locales libpam-cap util-linux-extra
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils bsdutils
  ca-certificates cpp-13 dctrl-tools debhelper dh-autoreconf dh-r
  dh-strip-nondeterminism dwz file fontconfig fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono g++-13 gcc-13 gcc-13-base gettext
  gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
  libalgorithm-c3-perl libarchive-zip-perl libasan8 libatomic1
  libb-hooks-endofscope-perl libb-hooks-op-check-perl libblas-dev libblas3
  libblkid1 libboost1.81-dev libbrotli1 libbsd0 libbz2-dev libcairo2 libcc1-0
  libclass-c3-perl libclass-load-perl libclass-load-xs-perl libclone-perl
  libcurl3-gnutls libcurl4 libdata-optlist-perl libdatrie1 libdebhelper-perl
  libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
  libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgcc-13-dev libgcc-s1 libgfortran-13-dev
  libgfortran5 libglib2.0-0 libgomp1 libgraphite2-3 libharfbuzz0b
  libhttp-date-perl libhttp-message-perl libice6 libicu-dev libicu72
  libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo libjpeg62-turbo-dev
  liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl liblzma-dev
  liblzma5 libmagic-mgc libmagic1 libmodule-implementation-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
  libmount1 libmro-compat-perl libnamespace-clean-perl libncurses-dev
  libncurses6 libncursesw6 libnghttp2-14 libpackage-deprecationmanager-perl
  libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
  libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0
  libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3
  libpng-dev libpng16-16 libpsl5 libreadline-dev libreadline8 librtmp1
  libsharpyuv0 libsm6 libsmartcols1 libssh2-1 libstdc++-13-dev libstdc++6
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-override-perl libswitch-perl
  libtcl8.6 libthai-data libthai0 libtiff6 libtimedate-perl libtinfo6 libtk8.6
  libtool libtry-tiny-perl libubsan1 libuchardet0 liburi-perl libuuid1
  libvariable-magic-perl libwebp7 libwww-curl-perl libwww-curl-simple-perl
  libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6
  libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mount
  ncurses-base ncurses-bin openssl pkg-config pkgconf pkgconf-bin po-debconf
  r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio
  r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
  r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib
  r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
  r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
  r-cran-bh r-cran-bitops r-cran-codetools r-cran-cpp11 r-cran-crayon
  r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r
  r-cran-lattice r-cran-littler r-cran-matrix r-cran-matrixstats r-cran-rcurl
  r-cran-restfulr r-cran-rjson r-cran-snow r-cran-xml r-cran-yaml
  readline-common ucf unzip util-linux util-linux-extra x11-common xauth
  xdg-utils xz-utils zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc gcc-13-locales cpp-13-doc
  debtags dh-make postgresql-client-common gcc-13-doc gettext-doc
  libasprintf-dev libgettextpo-dev gfortran-doc gfortran-13-doc
  libcoarrays-dev groff liblapack-doc libboost1.81-doc libboost-atomic1.81-dev
  libboost-chrono1.81-dev libboost-container1.81-dev libboost-context1.81-dev
  libboost-contract1.81-dev libboost-coroutine1.81-dev
  libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev
  libboost-filesystem1.81-dev libboost-graph1.81-dev
  libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev
  libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev
  libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev
  libboost-program-options1.81-dev libboost-python1.81-dev
  libboost-random1.81-dev libboost-regex1.81-dev
  libboost-serialization1.81-dev libboost-stacktrace1.81-dev
  libboost-system1.81-dev libboost-test1.81-dev libboost-thread1.81-dev
  libboost-timer1.81-dev libboost-type-erasure1.81-dev libboost-wave1.81-dev
  libboost1.81-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.81-dev
  low-memory-monitor icu-doc liblzma-doc cryptsetup-bin ncurses-doc
  libscalar-number-perl readline-doc libstdc++-13-doc tcl8.6 tk8.6 libtool-doc
  gcj-jdk libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl
  libcurl4-gnutls-dev m4-doc apparmor less www-browser nfs-common
  libmail-box-perl elpa-ess r-doc-info | r-doc-pdf r-mathlib r-base-html
  texlive-base texlive-latex-base texlive-plain-generic
  texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
  texlive-latex-recommended texlive-latex-extra texinfo r-bioc-all
  r-cran-runit r-bioc-biocstyle r-cran-knitr r-bioc-annotationdbi r-bioc-affy
  r-bioc-deseq2 r-bioc-annotate r-cran-testthat r-cran-rmarkdown
  r-cran-foreach r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation
  r-bioc-shortread r-cran-batchtools r-cran-data.table r-bioc-bsgenome
  r-bioc-genomicfeatures r-bioc-hdf5array r-bioc-genefilter r-cran-lobstr
  r-bioc-delayedmatrixstats r-bioc-rtracklayer r-bioc-edger r-bioc-gviz
  r-bioc-annotationhub r-bioc-dexseq r-bioc-keggrest r-cran-digest
  r-bioc-sparsematrixstats r-bioc-graph r-cran-jsonlite r-bioc-rhdf5
  r-cran-rstudioapi r-cran-shiny r-cran-getopt r-cran-rmpi r-cran-rlecuyer
  dosfstools kbd util-linux-locales
Recommended packages:
  devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
  libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
  libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
  libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
  uuid-runtime libmail-sendmail-perl r-recommended r-doc-html r-cran-bench
  r-cran-brio r-cran-callr r-cran-cli r-cran-covr r-cran-decor r-cran-desc
  r-cran-ggplot2 r-cran-glue r-cran-knitr r-cran-lobstr r-cran-mockery
  r-cran-progress r-cran-rmarkdown r-cran-scales r-cran-rcpp r-cran-testthat
  r-cran-tibble r-cran-vctrs r-cran-withr r-cran-testit r-cran-survival
  r-cran-base64enc r-cran-markdown r-cran-r.devices r-cran-r.rsp r-cran-runit
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
  gettext-base gfortran gfortran-13 groff-base icu-devtools intltool-debian
  libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1
  libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
  libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
  libdata-optlist-perl libdatrie1 libdebhelper-perl libdeflate0
  libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
  libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-13-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
  libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
  liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
  libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
  libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
  libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
  libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
  libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
  libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
  libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
  libxss1 libxt6 m4 man-db openssl pkg-config pkgconf pkgconf-bin po-debconf
  r-base-core r-base-dev r-bioc-biobase r-bioc-biocgenerics r-bioc-biocio
  r-bioc-biocparallel r-bioc-biostrings r-bioc-delayedarray
  r-bioc-genomeinfodb r-bioc-genomeinfodbdata r-bioc-genomicalignments
  r-bioc-genomicranges r-bioc-iranges r-bioc-matrixgenerics r-bioc-rhtslib
  r-bioc-rsamtools r-bioc-s4arrays r-bioc-s4vectors r-bioc-sparsearray
  r-bioc-summarizedexperiment r-bioc-xvector r-bioc-zlibbioc r-cran-abind
  r-cran-bh r-cran-bitops r-cran-codetools r-cran-cpp11 r-cran-crayon
  r-cran-formatr r-cran-futile.logger r-cran-futile.options r-cran-lambda.r
  r-cran-lattice r-cran-littler r-cran-matrix r-cran-matrixstats r-cran-rcurl
  r-cran-restfulr r-cran-rjson r-cran-snow r-cran-xml r-cran-yaml
  sbuild-build-depends-main-dummy ucf unzip x11-common xauth xdg-utils zip
  zlib1g-dev
The following packages will be upgraded:
  bsdutils cpp-13 g++-13 gcc-13 gcc-13-base libasan8 libatomic1 libblkid1
  libcc1-0 libgcc-13-dev libgcc-s1 libgomp1 liblzma5 libmount1 libncursesw6
  libreadline8 libsmartcols1 libstdc++-13-dev libstdc++6 libtinfo6 libubsan1
  libuuid1 mount ncurses-base ncurses-bin readline-common util-linux
  util-linux-extra xz-utils
29 upgraded, 208 newly installed, 0 to remove and 38 not upgraded.
Need to get 204 MB of archives.
After this operation, 521 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [984 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.3-2 [86.6 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf ncurses-bin armhf 6.4+20231209-1 [422 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.3-2 [102 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf util-linux-extra armhf 2.39.3-2 [135 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.3-2 [1113 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf ncurses-base all 6.4+20231209-1 [267 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.3-2 [134 kB]
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Get:11 http://172.17.4.1/private trixie-staging/main armhf libgomp1 armhf 13.2.0-7+rpi1 [104 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf gcc-13-base armhf 13.2.0-7+rpi1 [41.0 kB]
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Get:20 http://172.17.4.1/private trixie-staging/main armhf gcc-13 armhf 13.2.0-7+rpi1 [14.7 MB]
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Get:23 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.3-2 [145 kB]
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Get:31 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-3 [1033 kB]
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Get:36 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
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Get:39 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-14 [157 kB]
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Get:45 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:47 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-14 [496 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.8 [82.1 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.10-1 [10.6 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-4 [9009 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-14 [1203 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.8 [956 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:68 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.1.0-2 [280 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-2 [258 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.7-1 [328 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.7-1 [729 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.58.0-1 [61.7 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-3 [195 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.4.0-2+rpi1 [362 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.3-1 [1256 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 13.2.0-7+rpi1 [247 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-3 [188 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-3 [40.3 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-3 [30.5 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-4 [132 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-3 [299 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.2-1 [26.4 MB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf libgfortran-13-dev armhf 13.2.0-7+rpi1 [293 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf gfortran-13 armhf 13.2.0-7+rpi1 [7839 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:13.2.0-1+rpi1 [1424 B]
Get:127 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20231209-1 [80.5 kB]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20231209-1 [290 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-3 [124 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-2 [336 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.5-0.1 [278 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-4 [174 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-4 [9956 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.2-1 [4504 B]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.06-1 [10.7 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:159 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.45-1 [82.0 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:175 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:176 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:180 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:185 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:186 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:191 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.4.0-2+rpi1 [358 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20231201 [41.9 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf libboost1.81-dev armhf 1.81.0-7 [10.4 MB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.48.1-2 [597 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biobase armhf 2.62.0-1 [2118 kB]
Get:200 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4vectors armhf 0.40.2+dfsg-1 [2055 kB]
Get:201 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocio all 1.12.0+dfsg-1 [214 kB]
Get:202 http://172.17.4.1/private trixie-staging/main armhf r-cran-formatr all 1.14-1 [152 kB]
Get:203 http://172.17.4.1/private trixie-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:204 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:205 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:206 http://172.17.4.1/private trixie-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:207 http://172.17.4.1/private trixie-staging/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB]
Get:208 http://172.17.4.1/private trixie-staging/main armhf r-cran-bh all 1.81.0-1 [5776 B]
Get:209 http://172.17.4.1/private trixie-staging/main armhf r-cran-cpp11 all 0.4.6-1 [219 kB]
Get:210 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocparallel armhf 1.36.0-1 [1337 kB]
Get:211 http://172.17.4.1/private trixie-staging/main armhf r-bioc-iranges armhf 2.36.0-1 [2249 kB]
Get:212 http://172.17.4.1/private trixie-staging/main armhf r-bioc-zlibbioc all 1.48.0+dfsg-1 [9344 B]
Get:213 http://172.17.4.1/private trixie-staging/main armhf r-bioc-xvector armhf 0.42.0-1 [620 kB]
Get:214 http://172.17.4.1/private trixie-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:215 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcurl armhf 1.98-1.13+dfsg-1 [781 kB]
Get:216 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodbdata all 1.2.10-1 [12.0 MB]
Get:217 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodb all 1.38.1+dfsg-1 [3840 kB]
Get:218 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:219 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biostrings armhf 2.70.1-1 [14.2 MB]
Get:220 http://172.17.4.1/private trixie-staging/main armhf r-cran-lattice armhf 0.22-5-1 [1393 kB]
Get:221 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrix armhf 1.6-4-1 [3691 kB]
Get:222 http://172.17.4.1/private trixie-staging/main armhf r-cran-matrixstats armhf 1.1.0-1 [471 kB]
Get:223 http://172.17.4.1/private trixie-staging/main armhf r-bioc-matrixgenerics all 1.14.0-1 [407 kB]
Get:224 http://172.17.4.1/private trixie-staging/main armhf r-cran-abind all 1.4-5-2 [64.6 kB]
Get:225 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4arrays armhf 1.2.0+dfsg-1 [511 kB]
Get:226 http://172.17.4.1/private trixie-staging/main armhf r-bioc-sparsearray armhf 1.2.2+dfsg-1 [1178 kB]
Get:227 http://172.17.4.1/private trixie-staging/main armhf r-bioc-delayedarray armhf 0.28.0+dfsg-1 [1792 kB]
Get:228 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomicranges armhf 1.54.1+dfsg-1 [1827 kB]
Get:229 http://172.17.4.1/private trixie-staging/main armhf r-bioc-summarizedexperiment all 1.32.0+dfsg-1 [1139 kB]
Get:230 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhtslib armhf 2.4.0+dfsg-1 [1190 kB]
Get:231 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rsamtools armhf 2.18.0+dfsg-1 [3497 kB]
Get:232 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomicalignments armhf 1.38.0-1 [2140 kB]
Get:233 http://172.17.4.1/private trixie-staging/main armhf r-cran-littler armhf 0.3.18-2 [86.0 kB]
Get:234 http://172.17.4.1/private trixie-staging/main armhf r-cran-xml armhf 3.99-0.16-1 [1738 kB]
Get:235 http://172.17.4.1/private trixie-staging/main armhf r-cran-rjson armhf 0.2.21-1 [137 kB]
Get:236 http://172.17.4.1/private trixie-staging/main armhf r-cran-yaml armhf 2.3.7-1 [92.3 kB]
Get:237 http://172.17.4.1/private trixie-staging/main armhf r-cran-restfulr armhf 0.0.15-1 [348 kB]
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Setting up libexpat1:armhf (2.5.0-2) ...
Setting up libpipeline1:armhf (1.5.7-1) ...
Setting up libgraphite2-3:armhf (1.3.14-1) ...
Setting up libpixman-1-0:armhf (0.42.2-1) ...
Setting up libsharpyuv0:armhf (1.3.2-0.3) ...
Setting up libfile-which-perl (1.27-2) ...
Setting up libxau6:armhf (1:1.0.9-1) ...
Setting up libpsl5:armhf (0.21.2-1+b1) ...
Setting up libicu72:armhf (72.1-4) ...
Setting up liblerc4:armhf (4.0.0+ds-4) ...
Setting up bsdextrautils (2.39.3-2) ...
Setting up cpp-13 (13.2.0-7+rpi1) ...
Setting up libdynaloader-functions-perl (0.003-3) ...
Setting up libdatrie1:armhf (0.2.13-2+b2) ...
Setting up libmagic-mgc (1:5.45-2) ...
Setting up libclone-perl:armhf (0.46-1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up libsub-identify-perl (0.14-3) ...
Setting up libglib2.0-0:armhf (2.78.3-1) ...
No schema files found: doing nothing.
Setting up unzip (6.0-28) ...
Setting up libdebhelper-perl (13.11.8) ...
Setting up libbrotli1:armhf (1.1.0-2) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up x11-common (1:7.7+23) ...
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up libtry-tiny-perl (0.31-2) ...
Setting up libnghttp2-14:armhf (1.58.0-1) ...
Setting up libmagic1:armhf (1:5.45-2) ...
Setting up libdeflate0:armhf (1.18-1) ...
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Setting up libencode-locale-perl (1.05-3) ...
Setting up libboost1.81-dev:armhf (1.81.0-7) ...
Setting up file (1:5.45-2) ...
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Setting up libjbig0:armhf (2.1-6.1) ...
Setting up libpcre2-16-0:armhf (10.42-4) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up zip (3.0-13) ...
Setting up libpackage-stash-xs-perl:armhf (0.30-1+b1) ...
Setting up autotools-dev (20220109.1) ...
Setting up libpcre2-32-0:armhf (10.42-4) ...
Setting up libblas3:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpkgconf3:armhf (1.8.1-1) ...
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Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ...
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Setting up liblzma-dev:armhf (5.4.5-0.1) ...
Setting up libubsan1:armhf (13.2.0-7+rpi1) ...
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Setting up zlib1g-dev:armhf (1:1.2.13.dfsg-3) ...
Setting up libpcre2-posix3:armhf (10.42-4) ...
Setting up mount (2.39.3-2) ...
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Setting up libasan8:armhf (13.2.0-7+rpi1) ...
Setting up libuchardet0:armhf (0.0.8-1) ...
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Setting up libssh2-1:armhf (1.11.0-3) ...
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Setting up openssl (3.0.11-1) ...
Setting up libbsd0:armhf (0.11.7-4) ...
Setting up libelf1:armhf (0.188-2.1+rpi1) ...
Setting up libicu-dev:armhf (72.1-4) ...
Setting up libxml2:armhf (2.9.14+dfsg-1.3) ...
Setting up xdg-utils (1.1.3-4.1) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up libcc1-0:armhf (13.2.0-7+rpi1) ...
Setting up liburi-perl (5.21-1) ...
Setting up libblas-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up dctrl-tools (2.24-3) ...
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update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode
Setting up libfile-stripnondeterminism-perl (1.13.1-1) ...
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Setting up libpaper1:armhf (1.1.29) ...

Creating config file /etc/papersize with new version
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libncurses-dev:armhf (6.4+20231209-1) ...
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Setting up gettext (0.21-14) ...
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Setting up libtool (2.4.7-7) ...
Setting up libxcb-render0:armhf (1.15-1) ...
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Setting up libjpeg-dev:armhf (1:2.1.5-2) ...
Setting up libcurl3-gnutls:armhf (8.4.0-2+rpi1) ...
Setting up libxcb-shm0:armhf (1.15-1) ...
Setting up libpaper-utils (1.1.29) ...
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Setting up libdevel-callchecker-perl:armhf (0.008-2) ...
Setting up pkgconf:armhf (1.8.1-1) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up libthai0:armhf (0.1.29-1) ...
Setting up ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
Setting up libfreetype6:armhf (2.13.2+dfsg-1) ...
Setting up liblapack-dev:armhf (3.11.0-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
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Setting up fontconfig (2.14.2-6) ...
Regenerating fonts cache... done.
Setting up libxrender1:armhf (1:0.9.10-1.1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libparams-classify-perl:armhf (0.015-2+b1) ...
Setting up libpango-1.0-0:armhf (1.51.0+ds-3) ...
Setting up libxext6:armhf (2:1.3.4-1) ...
Setting up libwww-curl-perl:armhf (4.17-10) ...
Setting up man-db (2.12.0-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libcairo2:armhf (1.18.0-1) ...
Setting up libmodule-runtime-perl (0.016-2) ...
Setting up gcc-13 (13.2.0-7+rpi1) ...
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Setting up libpangocairo-1.0-0:armhf (1.51.0+ds-3) ...
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Setting up libxft2:armhf (2.3.6-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
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Setting up libtk8.6:armhf (8.6.13-2) ...
Setting up debhelper (13.11.8) ...
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Setting up libclass-load-perl (0.25-2) ...
Setting up gfortran-13 (13.2.0-7+rpi1) ...
Setting up r-base-core (4.3.2-1) ...

Creating config file /etc/R/Renviron with new version
Setting up r-cran-crayon (1.5.2-1) ...
Setting up r-cran-futile.options (1.0.1-3) ...
Setting up r-cran-lattice (0.22-5-1) ...
Setting up r-cran-formatr (1.14-1) ...
Setting up r-cran-xml (3.99-0.16-1) ...
Setting up libpackage-deprecationmanager-perl (0.18-1) ...
Setting up libdevel-overloadinfo-perl (0.007-1) ...
Setting up libclass-load-xs-perl (0.10-2+b1) ...
Setting up libb-hooks-endofscope-perl (0.26-1) ...
Setting up r-bioc-genomeinfodbdata (1.2.10-1) ...
Setting up r-cran-littler (0.3.18-2) ...
Setting up r-cran-codetools (0.2-19-1) ...
Setting up r-bioc-biocgenerics (0.48.1-2) ...
Setting up r-cran-matrixstats (1.1.0-1) ...
Setting up r-bioc-matrixgenerics (1.14.0-1) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up r-cran-abind (1.4-5-2) ...
Setting up r-cran-yaml (2.3.7-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up gfortran (4:13.2.0-1+rpi1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-bioc-zlibbioc (1.48.0+dfsg-1) ...
Setting up r-bioc-biobase (2.62.0-1) ...
Setting up r-cran-cpp11 (0.4.6-1) ...
Setting up r-bioc-s4vectors (0.40.2+dfsg-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-cran-matrix (1.6-4-1) ...
Setting up r-bioc-iranges (2.36.0-1) ...
Setting up r-cran-rjson (0.2.21-1) ...
Setting up r-cran-rcurl (1.98-1.13+dfsg-1) ...
Setting up r-cran-restfulr (0.0.15-1) ...
Setting up r-base-dev (4.3.2-1) ...
Setting up r-bioc-s4arrays (1.2.0+dfsg-1) ...
Setting up r-bioc-biocparallel (1.36.0-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-bioc-rhtslib (2.4.0+dfsg-1) ...
Setting up r-bioc-biocio (1.12.0+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.38.1+dfsg-1) ...
Setting up r-bioc-xvector (0.42.0-1) ...
Setting up dh-r (20231201) ...
Setting up r-bioc-sparsearray (1.2.2+dfsg-1) ...
Setting up r-bioc-genomicranges (1.54.1+dfsg-1) ...
Setting up r-bioc-biostrings (2.70.1-1) ...
Setting up r-bioc-rsamtools (2.18.0+dfsg-1) ...
Setting up r-bioc-delayedarray (0.28.0+dfsg-1) ...
Setting up r-bioc-summarizedexperiment (1.32.0+dfsg-1) ...
Setting up r-bioc-genomicalignments (1.38.0-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.37-12+rpi2) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.20-v7+ #1 SMP Mon Mar 18 11:37:02 GMT 2019 armhf (armv7l)
Toolchain package versions: binutils_2.41-6+rpi1 dpkg-dev_1.22.1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-7+rpi1 gcc-12_12.3.0-10+rpi1 gcc-13_13.2.0-7+rpi1 libc6-dev_2.37-12+rpi2 libstdc++-12-dev_12.3.0-10+rpi1 libstdc++-13-dev_13.2.0-7+rpi1 libstdc++6_13.2.0-7+rpi1 linux-libc-dev_6.5.6-1+rpi1
Package versions: adduser_3.137 apt_2.7.6 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.2 bash_5.2.15-2 binutils_2.41-6+rpi1 binutils-arm-linux-gnueabihf_2.41-6+rpi1 binutils-common_2.41-6+rpi1 bsdextrautils_2.39.3-2 bsdutils_1:2.39.3-2 build-essential_12.10 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:13.2.0-1+rpi1 cpp-12_12.3.0-10+rpi1 cpp-13_13.2.0-7+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.8 debianutils_5.14 dh-autoreconf_20 dh-r_20231201 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dirmngr_2.2.40-1.1 dpkg_1.22.1+rpi1 dpkg-dev_1.22.1+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:13.2.0-1+rpi1 g++-12_12.3.0-10+rpi1 g++-13_13.2.0-7+rpi1 gcc_4:13.2.0-1+rpi1 gcc-12_12.3.0-10+rpi1 gcc-12-base_12.3.0-10+rpi1 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ucf_3.0043+nmu1 unzip_6.0-28 usrmerge_38 util-linux_2.39.3-2 util-linux-extra_2.39.3-2 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.5-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-rtracklayer
Binary: r-bioc-rtracklayer
Architecture: any
Version: 1.62.0-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>, Charles Plessy <plessy@debian.org>
Homepage: https://bioconductor.org/packages/rtracklayer/
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-rtracklayer
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-rtracklayer.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomicranges, r-cran-xml, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-xvector, r-bioc-genomeinfodb, r-bioc-biostrings, r-bioc-zlibbioc, r-cran-rcurl, r-bioc-rsamtools, r-bioc-genomicalignments, r-bioc-biocio, r-cran-restfulr
Package-List:
 r-bioc-rtracklayer deb gnu-r optional arch=any
Checksums-Sha1:
 25d29dd3c140bc67ae9c7bff4cb3773f1e8238f8 4019225 r-bioc-rtracklayer_1.62.0.orig.tar.gz
 7c0fbc0df3045ea0c22c005227dee8557ffb5fd7 27224 r-bioc-rtracklayer_1.62.0-1.debian.tar.xz
Checksums-Sha256:
 c28217936c81248f2576af8327356324ccf7101b04f3358d049f0a839dd8b0cb 4019225 r-bioc-rtracklayer_1.62.0.orig.tar.gz
 fbb568d6d9f9f3518d1c4ffd12664cae5311dc15a5e6368aede96d657d6060c3 27224 r-bioc-rtracklayer_1.62.0-1.debian.tar.xz
Files:
 a16a9ca02e49808b38823899860abdb6 4019225 r-bioc-rtracklayer_1.62.0.orig.tar.gz
 3795851e90ee43bc822d543aee520448 27224 r-bioc-rtracklayer_1.62.0-1.debian.tar.xz

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gpgv: Signature made Thu Nov 30 17:25:54 2023 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-rtracklayer_1.62.0-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-rtracklayer in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-rtracklayer_1.62.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-rtracklayer_1.62.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying delete_configure.patch
dpkg-source: info: applying Fix_autopkgtest.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DBUS_SESSION_BUS_ADDRESS=unix:path=/run/user/112/bus
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
INVOCATION_ID=7507367173ad4858a061fdd2cf60741a
JOURNAL_STREAM=8:39174
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
PWD=/
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=117
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-08d2e855-bdfa-4834-8254-a6246427af4a
SCHROOT_UID=112
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
XDG_RUNTIME_DIR=/run/user/112
XDG_SESSION_CLASS=background
XDG_SESSION_ID=c9458
XDG_SESSION_TYPE=unspecified

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -us -uc -mRaspbian pi4 based autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-rtracklayer
dpkg-buildpackage: info: source version 1.62.0-1
dpkg-buildpackage: info: source distribution unstable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
configure.ac:19: warning: AC_OUTPUT should be used without arguments.
configure.ac:19: You should run autoupdate.
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-rtracklayer/ -a -O--buildsystem=R
I: R Package: rtracklayer Version: 1.62.0
I: Building using R version 4.3.2-1
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Thu, 30 Nov 2023 18:23:42 +0100
	mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library
	R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library --clean . "--built-timestamp='Thu, 30 Nov 2023 18:23:42 +0100'"
* installing *source* package ‘rtracklayer’ ...
** using staged installation
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for openssl >= 1.0... no
configure: creating ./config.status
config.status: creating src/Makevars
** libs
using C compiler: ‘gcc (Raspbian 13.2.0-7+rpi1) 13.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c IRanges_stubs.c -o IRanges_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c R_init_rtracklayer.c -o R_init_rtracklayer.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c readGFF.c -o readGFF.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bbiHelper.c -o bbiHelper.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bigWig.c -o bigWig.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bigBedHelper.c -o bigBedHelper.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bigBed.c -o bigBed.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c chain_io.c -o chain_io.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c twoBit.c -o twoBit.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c handlers.c -o handlers.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c utils.c -o utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/memgfx.c -o ucsc/memgfx.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/aliType.c -o ucsc/aliType.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/binRange.c -o ucsc/binRange.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/htmlColor.c -o ucsc/htmlColor.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/sqlList.c -o ucsc/sqlList.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/tokenizer.c -o ucsc/tokenizer.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/asParse.c -o ucsc/asParse.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/basicBed.c -o ucsc/basicBed.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/bigBed.c -o ucsc/bigBed.o
ucsc/bigBed.c: In function ‘extractField’:
ucsc/bigBed.c:314:52: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
  314 |         warn("Not enough fields in extractField of %s", line);
      |                                                    ^~
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/bPlusTree.c -o ucsc/bPlusTree.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/bbiRead.c -o ucsc/bbiRead.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/bbiWrite.c -o ucsc/bbiWrite.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/bwgCreate.c -o ucsc/bwgCreate.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/bwgQuery.c -o ucsc/bwgQuery.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/cirTree.c -o ucsc/cirTree.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/common.c -o ucsc/common.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/dnaseq.c -o ucsc/dnaseq.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/dnautil.c -o ucsc/dnautil.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/errAbort.c -o ucsc/errAbort.o
ucsc/errAbort.c: In function ‘getThreadVars’:
ucsc/errAbort.c:331:5: warning: ignoring return value of ‘write’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  331 |     write(STDERR_FILENO, errMsg, strlen(errMsg));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/hash.c -o ucsc/hash.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/linefile.c -o ucsc/linefile.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/localmem.c -o ucsc/localmem.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/sqlNum.c -o ucsc/sqlNum.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/zlibFace.c -o ucsc/zlibFace.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/dystring.c -o ucsc/dystring.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/hmmstats.c -o ucsc/hmmstats.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/obscure.c -o ucsc/obscure.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/pipeline.c -o ucsc/pipeline.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/rangeTree.c -o ucsc/rangeTree.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/rbTree.c -o ucsc/rbTree.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/memalloc.c -o ucsc/memalloc.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/dlist.c -o ucsc/dlist.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/hex.c -o ucsc/hex.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/filePath.c -o ucsc/filePath.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/htmlPage.c -o ucsc/htmlPage.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/udc.c -o ucsc/udc.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/net.c -o ucsc/net.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/bits.c -o ucsc/bits.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/twoBit.c -o ucsc/twoBit.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/internet.c -o ucsc/internet.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/https.c -o ucsc/https.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/base64.c -o ucsc/base64.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/verbose.c -o ucsc/verbose.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/os.c -o ucsc/os.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/wildcmp.c -o ucsc/wildcmp.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-J5FNa4/r-base-4.3.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ucsc/_portimpl.c -o ucsc/_portimpl.o
gcc -shared -L/usr/lib/R/lib -Wl,-z,relro -o rtracklayer.so S4Vectors_stubs.o IRanges_stubs.o XVector_stubs.o R_init_rtracklayer.o readGFF.o bbiHelper.o bigWig.o bigBedHelper.o bigBed.o chain_io.o twoBit.o handlers.o utils.o ucsc/memgfx.o ucsc/aliType.o ucsc/binRange.o ucsc/htmlColor.o ucsc/sqlList.o ucsc/tokenizer.o ucsc/asParse.o ucsc/basicBed.o ucsc/bigBed.o ucsc/bPlusTree.o ucsc/bbiRead.o ucsc/bbiWrite.o ucsc/bwgCreate.o ucsc/bwgQuery.o ucsc/cirTree.o ucsc/common.o ucsc/dnaseq.o ucsc/dnautil.o ucsc/errAbort.o ucsc/hash.o ucsc/linefile.o ucsc/localmem.o ucsc/sqlNum.o ucsc/zlibFace.o ucsc/dystring.o ucsc/hmmstats.o ucsc/obscure.o ucsc/pipeline.o ucsc/rangeTree.o ucsc/rbTree.o ucsc/memalloc.o ucsc/dlist.o ucsc/hex.o ucsc/filePath.o ucsc/htmlPage.o ucsc/udc.o ucsc/net.o ucsc/bits.o ucsc/twoBit.o ucsc/_cheapcgi.o ucsc/internet.o ucsc/https.o ucsc/base64.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o ucsc/_portimpl.o -lz -pthread -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/00LOCK-r-bioc-rtracklayer-1.62.0/00new/rtracklayer/libs
** R
** data
** demo
** inst
** byte-compile and prepare package for lazy loading
Creating a generic function for ‘offset’ from package ‘stats’ in package ‘rtracklayer’
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rtracklayer)
	rm -f /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/LICENSE
W: Ignoring specified R dependency: R (>= 3.5.0)
I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.37.2)
I: Using r-bioc-bsgenome for Suggests:BSgenome (>= 1.33.4)
W: Cannot find a debian package for Suggests:humanStemCell
W: Cannot find a debian package for Suggests:microRNA (>= 1.1.1)
I: Using r-bioc-genefilter for Suggests:genefilter
I: Using r-bioc-limma for Suggests:limma
I: Using r-bioc-org.hs.eg.db for Suggests:org.Hs.eg.db
W: Cannot find a debian package for Suggests:hgu133plus2.db
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene
I: Using r-cran-runit for Suggests:RUnit
I: Using r-cran-xml for Imports:XML (>= 1.98-0)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.35.3)
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.23.18)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.13.13)
I: Using r-bioc-xvector for Imports:XVector (>= 0.19.7)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.15.2)
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.47.6)
I: Using r-bioc-zlibbioc for Imports:zlibbioc
I: Using r-cran-rcurl for Imports:RCurl (>= 1.4-2)
I: Using r-bioc-rsamtools for Imports:Rsamtools (>= 1.31.2)
I: Using r-bioc-genomicalignments for Imports:GenomicAlignments (>= 1.15.6)
I: Using r-bioc-biocio for Imports:BiocIO
I: Using r-cran-restfulr for Imports:restfulr (>= 0.0.13)
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: Using r-bioc-xvector for LinkingTo:XVector
I: BioConductor API version: r-api-bioc-3.18
I: Use r-bioc-rtracklayer as Debian binary package for variables substitution
   dh_installdocs -a -O--buildsystem=R
   dh_installchangelogs -a -O--buildsystem=R
   dh_installsystemduser -a -O--buildsystem=R
   dh_perl -a -O--buildsystem=R
   dh_link -a -O--buildsystem=R
   dh_strip_nondeterminism -a -O--buildsystem=R
   dh_compress -a -O--buildsystem=R
   dh_fixperms -a -O--buildsystem=R
   dh_missing -a -O--buildsystem=R
   dh_dwz -a -O--buildsystem=R
   dh_strip -a -O--buildsystem=R
   dh_makeshlibs -a -O--buildsystem=R
   dh_shlibdeps -a -O--buildsystem=R
   dh_installdeb -a -O--buildsystem=R
   dh_gencontrol -a -O--buildsystem=R
   dh_md5sums -a -O--buildsystem=R
   dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-rtracklayer-dbgsym' in '../r-bioc-rtracklayer-dbgsym_1.62.0-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-rtracklayer' in '../r-bioc-rtracklayer_1.62.0-1_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../r-bioc-rtracklayer_1.62.0-1_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian pi4 based autobuilder <root@raspbian.org> -O../r-bioc-rtracklayer_1.62.0-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-12-17T23:08:56Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-rtracklayer_1.62.0-1_armhf.changes:
------------------------------------------

Format: 1.8
Date: Thu, 30 Nov 2023 18:23:42 +0100
Source: r-bioc-rtracklayer
Binary: r-bioc-rtracklayer r-bioc-rtracklayer-dbgsym
Architecture: armhf
Version: 1.62.0-1
Distribution: trixie-staging
Urgency: medium
Maintainer: Raspbian pi4 based autobuilder <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
 r-bioc-rtracklayer - GNU R interface to genome browsers and their annotation tracks
Changes:
 r-bioc-rtracklayer (1.62.0-1) unstable; urgency=medium
 .
   * New upstream version
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Files:
 ecf99baea9e9dabf402e2138fef4e751 155320 debug optional r-bioc-rtracklayer-dbgsym_1.62.0-1_armhf.deb
 1f61963a6600d2505d9f202fe36d1a00 11283 gnu-r optional r-bioc-rtracklayer_1.62.0-1_armhf.buildinfo
 7a3aa9dbd048529e079bf0dc6ca180d7 5059796 gnu-r optional r-bioc-rtracklayer_1.62.0-1_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: r-bioc-rtracklayer
Binary: r-bioc-rtracklayer r-bioc-rtracklayer-dbgsym
Architecture: armhf
Version: 1.62.0-1
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Sun, 17 Dec 2023 23:08:54 +0000
Build-Path: /<<PKGBUILDDIR>>
Build-Tainted-By:
 merged-usr-via-aliased-dirs
Installed-Build-Depends:
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-14),
 autotools-dev (= 20220109.1),
 base-files (= 13+rpi1),
 base-passwd (= 3.6.2),
 bash (= 5.2.15-2),
 binutils (= 2.41-6+rpi1),
 binutils-arm-linux-gnueabihf (= 2.41-6+rpi1),
 binutils-common (= 2.41-6+rpi1),
 bsdextrautils (= 2.39.3-2),
 bsdutils (= 1:2.39.3-2),
 build-essential (= 12.10),
 bzip2 (= 1.0.8-5+b2),
 ca-certificates (= 20230311),
 coreutils (= 9.1-1),
 cpp (= 4:13.2.0-1+rpi1),
 cpp-12 (= 12.3.0-10+rpi1),
 cpp-13 (= 13.2.0-7+rpi1),
 dash (= 0.5.12-6),
 dctrl-tools (= 2.24-3),
 debconf (= 1.5.82),
 debhelper (= 13.11.8),
 debianutils (= 5.14),
 dh-autoreconf (= 20),
 dh-r (= 20231201),
 dh-strip-nondeterminism (= 1.13.1-1),
 diffutils (= 1:3.10-1),
 dpkg (= 1.22.1+rpi1),
 dpkg-dev (= 1.22.1+rpi1),
 dwz (= 0.15-1),
 file (= 1:5.45-2),
 findutils (= 4.9.0-5),
 fontconfig (= 2.14.2-6),
 fontconfig-config (= 2.14.2-6),
 fonts-dejavu-core (= 2.37-8),
 fonts-dejavu-mono (= 2.37-8),
 g++ (= 4:13.2.0-1+rpi1),
 g++-13 (= 13.2.0-7+rpi1),
 gcc (= 4:13.2.0-1+rpi1),
 gcc-12 (= 12.3.0-10+rpi1),
 gcc-12-base (= 12.3.0-10+rpi1),
 gcc-13 (= 13.2.0-7+rpi1),
 gcc-13-base (= 13.2.0-7+rpi1),
 gettext (= 0.21-14),
 gettext-base (= 0.21-14),
 gfortran (= 4:13.2.0-1+rpi1),
 gfortran-13 (= 13.2.0-7+rpi1),
 grep (= 3.11-3),
 groff-base (= 1.23.0-3),
 gzip (= 1.12-1),
 hostname (= 3.23+nmu1),
 icu-devtools (= 72.1-4),
 init-system-helpers (= 1.65.2),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.1-3),
 libalgorithm-c3-perl (= 0.11-2),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 13.2.0-7+rpi1),
 libatomic1 (= 13.2.0-7+rpi1),
 libattr1 (= 1:2.5.1-4),
 libaudit-common (= 1:3.1.1-1),
 libaudit1 (= 1:3.1.1-1),
 libb-hooks-endofscope-perl (= 0.26-1),
 libb-hooks-op-check-perl (= 0.22-2+b1),
 libbinutils (= 2.41-6+rpi1),
 libblas-dev (= 3.11.0-2),
 libblas3 (= 3.11.0-2),
 libblkid1 (= 2.39.3-2),
 libboost1.81-dev (= 1.81.0-7),
 libbrotli1 (= 1.1.0-2),
 libbsd0 (= 0.11.7-4),
 libbz2-1.0 (= 1.0.8-5+b2),
 libbz2-dev (= 1.0.8-5+b2),
 libc-bin (= 2.37-12+rpi2),
 libc-dev-bin (= 2.37-12+rpi2),
 libc6 (= 2.37-12+rpi2),
 libc6-dev (= 2.37-12+rpi2),
 libcairo2 (= 1.18.0-1),
 libcap-ng0 (= 0.8.3-1+b1),
 libcap2 (= 1:2.66-4),
 libcc1-0 (= 13.2.0-7+rpi1),
 libclass-c3-perl (= 0.35-2),
 libclass-load-perl (= 0.25-2),
 libclass-load-xs-perl (= 0.10-2+b1),
 libclone-perl (= 0.46-1),
 libcom-err2 (= 1.47.0-2),
 libcrypt-dev (= 1:4.4.36-2),
 libcrypt1 (= 1:4.4.36-2),
 libctf-nobfd0 (= 2.41-6+rpi1),
 libctf0 (= 2.41-6+rpi1),
 libcurl3-gnutls (= 8.4.0-2+rpi1),
 libcurl4 (= 8.4.0-2+rpi1),
 libdata-optlist-perl (= 0.114-1),
 libdatrie1 (= 0.2.13-2+b2),
 libdb5.3 (= 5.3.28+dfsg2-2),
 libdebconfclient0 (= 0.271),
 libdebhelper-perl (= 13.11.8),
 libdeflate0 (= 1.18-1),
 libdevel-callchecker-perl (= 0.008-2),
 libdevel-globaldestruction-perl (= 0.14-4),
 libdevel-overloadinfo-perl (= 0.007-1),
 libdevel-stacktrace-perl (= 2.0400-2),
 libdist-checkconflicts-perl (= 0.11-2),
 libdpkg-perl (= 1.22.1+rpi1),
 libdynaloader-functions-perl (= 0.003-3),
 libelf1 (= 0.188-2.1+rpi1),
 libencode-locale-perl (= 1.05-3),
 libeval-closure-perl (= 0.14-3),
 libexpat1 (= 2.5.0-2),
 libffi8 (= 3.4.4-1),
 libfile-find-rule-perl (= 0.34-3),
 libfile-stripnondeterminism-perl (= 1.13.1-1),
 libfile-which-perl (= 1.27-2),
 libfontconfig1 (= 2.14.2-6),
 libfreetype6 (= 2.13.2+dfsg-1),
 libfribidi0 (= 1.0.13-3),
 libgcc-12-dev (= 12.3.0-10+rpi1),
 libgcc-13-dev (= 13.2.0-7+rpi1),
 libgcc-s1 (= 13.2.0-7+rpi1),
 libgcrypt20 (= 1.10.2-3),
 libgdbm-compat4 (= 1.23-3),
 libgdbm6 (= 1.23-3),
 libgfortran-13-dev (= 13.2.0-7+rpi1),
 libgfortran5 (= 13.2.0-7+rpi1),
 libglib2.0-0 (= 2.78.3-1),
 libgmp10 (= 2:6.3.0+dfsg-2),
 libgnutls30 (= 3.8.1-4),
 libgomp1 (= 13.2.0-7+rpi1),
 libgpg-error0 (= 1.47-2),
 libgraphite2-3 (= 1.3.14-1),
 libgssapi-krb5-2 (= 1.20.1-5),
 libharfbuzz0b (= 8.0.1-1),
 libhogweed6 (= 3.9.1-2),
 libhttp-date-perl (= 6.06-1),
 libhttp-message-perl (= 6.45-1),
 libice6 (= 2:1.0.10-1),
 libicu-dev (= 72.1-4),
 libicu72 (= 72.1-4),
 libidn2-0 (= 2.3.4-1),
 libio-html-perl (= 1.004-3),
 libisl23 (= 0.26-3),
 libjansson4 (= 2.14-2),
 libjbig0 (= 2.1-6.1),
 libjpeg-dev (= 1:2.1.5-2),
 libjpeg62-turbo (= 1:2.1.5-2),
 libjpeg62-turbo-dev (= 1:2.1.5-2),
 libk5crypto3 (= 1.20.1-5),
 libkeyutils1 (= 1.6.3-2),
 libkrb5-3 (= 1.20.1-5),
 libkrb5support0 (= 1.20.1-5),
 liblapack-dev (= 3.11.0-2),
 liblapack3 (= 3.11.0-2),
 libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1),
 liblerc4 (= 4.0.0+ds-4),
 liblwp-mediatypes-perl (= 6.04-2),
 liblz4-1 (= 1.9.4-1+rpi1+b1),
 liblzma-dev (= 5.4.5-0.1),
 liblzma5 (= 5.4.5-0.1),
 libmagic-mgc (= 1:5.45-2),
 libmagic1 (= 1:5.45-2),
 libmd0 (= 1.1.0-1),
 libmodule-implementation-perl (= 0.09-2),
 libmodule-runtime-conflicts-perl (= 0.003-2),
 libmodule-runtime-perl (= 0.016-2),
 libmoose-perl (= 2.2206-1),
 libmount1 (= 2.39.3-2),
 libmpc3 (= 1.3.1-1),
 libmpfr6 (= 4.2.1-1),
 libmro-compat-perl (= 0.15-2),
 libnamespace-clean-perl (= 0.27-2),
 libncurses-dev (= 6.4+20231209-1),
 libncurses6 (= 6.4+20231209-1),
 libncursesw6 (= 6.4+20231209-1),
 libnettle8 (= 3.9.1-2),
 libnghttp2-14 (= 1.58.0-1),
 libnsl-dev (= 1.3.0-3),
 libnsl2 (= 1.3.0-3),
 libnumber-compare-perl (= 0.03-3),
 libp11-kit0 (= 0.25.0-5),
 libpackage-deprecationmanager-perl (= 0.18-1),
 libpackage-stash-perl (= 0.40-1),
 libpackage-stash-xs-perl (= 0.30-1+b1),
 libpam-modules (= 1.5.2-9.1),
 libpam-modules-bin (= 1.5.2-9.1),
 libpam-runtime (= 1.5.2-9.1),
 libpam0g (= 1.5.2-9.1),
 libpango-1.0-0 (= 1.51.0+ds-3),
 libpangocairo-1.0-0 (= 1.51.0+ds-3),
 libpangoft2-1.0-0 (= 1.51.0+ds-3),
 libpaper-utils (= 1.1.29),
 libpaper1 (= 1.1.29),
 libparams-classify-perl (= 0.015-2+b1),
 libparams-util-perl (= 1.102-2+b1),
 libpcre2-16-0 (= 10.42-4),
 libpcre2-32-0 (= 10.42-4),
 libpcre2-8-0 (= 10.42-4),
 libpcre2-dev (= 10.42-4),
 libpcre2-posix3 (= 10.42-4),
 libperl5.36 (= 5.36.0-9),
 libpipeline1 (= 1.5.7-1),
 libpixman-1-0 (= 0.42.2-1),
 libpkgconf3 (= 1.8.1-1),
 libpng-dev (= 1.6.40-2),
 libpng16-16 (= 1.6.40-2),
 libpsl5 (= 0.21.2-1+b1),
 libreadline-dev (= 8.2-3),
 libreadline8 (= 8.2-3),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libsasl2-2 (= 2.1.28+dfsg1-3),
 libsasl2-modules-db (= 2.1.28+dfsg1-3),
 libseccomp2 (= 2.5.4-1+rpi1+b1),
 libselinux1 (= 3.5-1),
 libsframe1 (= 2.41-6+rpi1),
 libsharpyuv0 (= 1.3.2-0.3),
 libsm6 (= 2:1.2.3-1),
 libsmartcols1 (= 2.39.3-2),
 libssh2-1 (= 1.11.0-3),
 libssl3 (= 3.0.11-1),
 libstdc++-12-dev (= 12.3.0-10+rpi1),
 libstdc++-13-dev (= 13.2.0-7+rpi1),
 libstdc++6 (= 13.2.0-7+rpi1),
 libsub-exporter-perl (= 0.990-1),
 libsub-exporter-progressive-perl (= 0.001013-3),
 libsub-identify-perl (= 0.14-3),
 libsub-install-perl (= 0.929-1),
 libsub-name-perl (= 0.27-1),
 libsub-override-perl (= 0.10-1),
 libswitch-perl (= 2.17-3),
 libsystemd0 (= 254.5-1+rpi1),
 libtasn1-6 (= 4.19.0-3),
 libtcl8.6 (= 8.6.13+dfsg-2),
 libtext-glob-perl (= 0.11-3),
 libthai-data (= 0.1.29-1),
 libthai0 (= 0.1.29-1),
 libtiff6 (= 4.5.1+git230720-3),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.4+20231209-1),
 libtirpc-common (= 1.3.3+ds-1),
 libtirpc-dev (= 1.3.3+ds-1),
 libtirpc3 (= 1.3.3+ds-1),
 libtk8.6 (= 8.6.13-2),
 libtool (= 2.4.7-7),
 libtry-tiny-perl (= 0.31-2),
 libubsan1 (= 13.2.0-7+rpi1),
 libuchardet0 (= 0.0.8-1),
 libudev1 (= 254.5-1+rpi1),
 libunistring5 (= 1.1-2),
 liburi-perl (= 5.21-1),
 libuuid1 (= 2.39.3-2),
 libvariable-magic-perl (= 0.63-1+b1),
 libwebp7 (= 1.3.2-0.3),
 libwww-curl-perl (= 4.17-10),
 libwww-curl-simple-perl (= 0.100191-3),
 libx11-6 (= 2:1.8.7-1),
 libx11-data (= 2:1.8.7-1),
 libxau6 (= 1:1.0.9-1),
 libxcb-render0 (= 1.15-1),
 libxcb-shm0 (= 1.15-1),
 libxcb1 (= 1.15-1),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.4-1),
 libxft2 (= 2.3.6-1),
 libxml2 (= 2.9.14+dfsg-1.3),
 libxmuu1 (= 2:1.1.3-3),
 libxrender1 (= 1:0.9.10-1.1),
 libxss1 (= 1:1.2.3-1),
 libxt6 (= 1:1.2.1-1.1),
 libzstd1 (= 1.5.5+dfsg2-2),
 linux-libc-dev (= 6.5.6-1+rpi1),
 login (= 1:4.13+dfsg1-3),
 lsb-base (= 11.6+rpi1),
 m4 (= 1.4.19-4),
 make (= 4.3-4.1),
 man-db (= 2.12.0-1),
 mawk (= 1.3.4.20230808-1),
 ncurses-base (= 6.4+20231209-1),
 ncurses-bin (= 6.4+20231209-1),
 openssl (= 3.0.11-1),
 patch (= 2.7.6-7),
 perl (= 5.36.0-9),
 perl-base (= 5.36.0-9),
 perl-modules-5.36 (= 5.36.0-9),
 pkg-config (= 1.8.1-1),
 pkgconf (= 1.8.1-1),
 pkgconf-bin (= 1.8.1-1),
 po-debconf (= 1.0.21+nmu1),
 r-base-core (= 4.3.2-1),
 r-base-dev (= 4.3.2-1),
 r-bioc-biobase (= 2.62.0-1),
 r-bioc-biocgenerics (= 0.48.1-2),
 r-bioc-biocio (= 1.12.0+dfsg-1),
 r-bioc-biocparallel (= 1.36.0-1),
 r-bioc-biostrings (= 2.70.1-1),
 r-bioc-delayedarray (= 0.28.0+dfsg-1),
 r-bioc-genomeinfodb (= 1.38.1+dfsg-1),
 r-bioc-genomeinfodbdata (= 1.2.10-1),
 r-bioc-genomicalignments (= 1.38.0-1),
 r-bioc-genomicranges (= 1.54.1+dfsg-1),
 r-bioc-iranges (= 2.36.0-1),
 r-bioc-matrixgenerics (= 1.14.0-1),
 r-bioc-rhtslib (= 2.4.0+dfsg-1),
 r-bioc-rsamtools (= 2.18.0+dfsg-1),
 r-bioc-s4arrays (= 1.2.0+dfsg-1),
 r-bioc-s4vectors (= 0.40.2+dfsg-1),
 r-bioc-sparsearray (= 1.2.2+dfsg-1),
 r-bioc-summarizedexperiment (= 1.32.0+dfsg-1),
 r-bioc-xvector (= 0.42.0-1),
 r-bioc-zlibbioc (= 1.48.0+dfsg-1),
 r-cran-abind (= 1.4-5-2),
 r-cran-bh (= 1.81.0-1),
 r-cran-bitops (= 1.0-7-1),
 r-cran-codetools (= 0.2-19-1),
 r-cran-cpp11 (= 0.4.6-1),
 r-cran-crayon (= 1.5.2-1),
 r-cran-formatr (= 1.14-1),
 r-cran-futile.logger (= 1.4.3-4),
 r-cran-futile.options (= 1.0.1-3),
 r-cran-lambda.r (= 1.2.4-2),
 r-cran-lattice (= 0.22-5-1),
 r-cran-littler (= 0.3.18-2),
 r-cran-matrix (= 1.6-4-1),
 r-cran-matrixstats (= 1.1.0-1),
 r-cran-rcurl (= 1.98-1.13+dfsg-1),
 r-cran-restfulr (= 0.0.15-1),
 r-cran-rjson (= 0.2.21-1),
 r-cran-snow (= 1:0.4.4-2),
 r-cran-xml (= 3.99-0.16-1),
 r-cran-yaml (= 2.3.7-1),
 readline-common (= 8.2-3),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-1),
 sensible-utils (= 0.0.20),
 sysvinit-utils (= 3.08-3),
 tar (= 1.34+dfsg-1.2),
 tzdata (= 2023c-10),
 ucf (= 3.0043+nmu1),
 unzip (= 6.0-28),
 usrmerge (= 38),
 util-linux (= 2.39.3-2),
 x11-common (= 1:7.7+23),
 xauth (= 1:1.1.2-1),
 xdg-utils (= 1.1.3-4.1),
 xz-utils (= 5.4.5-0.1),
 zip (= 3.0-13),
 zlib1g (= 1:1.2.13.dfsg-3),
 zlib1g-dev (= 1:1.2.13.dfsg-3)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1701365022"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-rtracklayer-dbgsym_1.62.0-1_armhf.deb
--------------------------------------------

 new Debian package, version 2.0.
 size 155320 bytes: control archive=544 bytes.
     410 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: r-bioc-rtracklayer-dbgsym
 Source: r-bioc-rtracklayer
 Version: 1.62.0-1
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 233
 Depends: r-bioc-rtracklayer (= 1.62.0-1)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-rtracklayer
 Build-Ids: 3e4409f4e90f59361479a4374251381440b2bc18

drwxr-xr-x root/root         0 2023-11-30 17:23 ./
drwxr-xr-x root/root         0 2023-11-30 17:23 ./usr/
drwxr-xr-x root/root         0 2023-11-30 17:23 ./usr/lib/
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drwxr-xr-x root/root         0 2023-11-30 17:23 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2023-11-30 17:23 ./usr/lib/debug/.build-id/3e/
-rw-r--r-- root/root    227520 2023-11-30 17:23 ./usr/lib/debug/.build-id/3e/4409f4e90f59361479a4374251381440b2bc18.debug
drwxr-xr-x root/root         0 2023-11-30 17:23 ./usr/share/
drwxr-xr-x root/root         0 2023-11-30 17:23 ./usr/share/doc/
lrwxrwxrwx root/root         0 2023-11-30 17:23 ./usr/share/doc/r-bioc-rtracklayer-dbgsym -> r-bioc-rtracklayer


r-bioc-rtracklayer_1.62.0-1_armhf.deb
-------------------------------------

 new Debian package, version 2.0.
 size 5059796 bytes: control archive=3164 bytes.
    1300 bytes,    17 lines      control
    7253 bytes,    81 lines      md5sums
 Package: r-bioc-rtracklayer
 Version: 1.62.0-1
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 6595
 Depends: r-api-4.0, r-api-bioc-3.18, r-bioc-genomicranges (>= 1.37.2), r-cran-xml (>= 1.98-0), r-bioc-biocgenerics (>= 0.35.3), r-bioc-s4vectors (>= 0.23.18), r-bioc-iranges (>= 2.13.13), r-bioc-xvector (>= 0.19.7), r-bioc-genomeinfodb (>= 1.15.2), r-bioc-biostrings (>= 2.47.6), r-bioc-zlibbioc, r-cran-rcurl (>= 1.4-2), r-bioc-rsamtools (>= 1.31.2), r-bioc-genomicalignments (>= 1.15.6), r-bioc-biocio, r-cran-restfulr (>= 0.0.13), libc6 (>= 2.34), zlib1g (>= 1:1.1.4)
 Suggests: r-bioc-bsgenome (>= 1.33.4), r-bioc-genefilter, r-bioc-limma, r-bioc-org.hs.eg.db, r-bioc-genomicfeatures, r-cran-runit
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/rtracklayer/
 Description: GNU R interface to genome browsers and their annotation tracks
  Extensible framework for interacting with multiple genome browsers
  (currently UCSC built-in) and manipulating annotation tracks in various
  formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit
  built-in). The user may export/import tracks to/from the supported
  browsers, as well as query and modify the browser state, such as the
  current viewport.

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+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 19092
Build-Time: 183
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 1616
Job: r-bioc-rtracklayer_1.62.0-1
Machine Architecture: armhf
Package: r-bioc-rtracklayer
Package-Time: 1836
Source-Version: 1.62.0-1
Space: 19092
Status: successful
Version: 1.62.0-1
--------------------------------------------------------------------------------
Finished at 2023-12-17T23:08:56Z
Build needed 00:30:36, 19092k disk space
Raspbian Package Auto-Building

Build log for r-bioc-rtracklayer (1.62.0-1) on armhf
