r-bioc-rtracklayer →
1.38.3-1 →
armhf → 2018-03-20 10:47:05
sbuild (Debian sbuild) 0.72.0 (25 Oct 2016) on mb-lxc-01
+==============================================================================+
| r-bioc-rtracklayer 1.38.3-1 (armhf) Tue, 20 Mar 2018 10:35:25 +0000 |
+==============================================================================+
Package: r-bioc-rtracklayer
Version: 1.38.3-1
Source Version: 1.38.3-1
Distribution: buster-staging
Machine Architecture: armhf
Host Architecture: armhf
Build Architecture: armhf
I: NOTICE: Log filtering will replace 'var/lib/schroot/mount/buster-staging-armhf-sbuild-890bb37a-ff6a-49c8-8ada-701fefb14904' with '<<CHROOT>>'
+------------------------------------------------------------------------------+
| Update chroot |
+------------------------------------------------------------------------------+
Get:1 http://172.17.0.1/private buster-staging InRelease [11.3 kB]
Get:2 http://172.17.0.1/private buster-staging/main Sources [10.7 MB]
Get:3 http://172.17.0.1/private buster-staging/main armhf Packages [12.4 MB]
Fetched 23.1 MB in 8s (2804 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Fetch source files |
+------------------------------------------------------------------------------+
Check APT
---------
Checking available source versions...
Download source files with APT
------------------------------
Reading package lists...
NOTICE: 'r-bioc-rtracklayer' packaging is maintained in the 'Git' version control system at:
https://anonscm.debian.org/git/debian-med/r-bioc-rtracklayer.git
Please use:
git clone https://anonscm.debian.org/git/debian-med/r-bioc-rtracklayer.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 1408 kB of source archives.
Get:1 http://172.17.0.1/private buster-staging/main r-bioc-rtracklayer 1.38.3-1 (dsc) [2224 B]
Get:2 http://172.17.0.1/private buster-staging/main r-bioc-rtracklayer 1.38.3-1 (tar) [1380 kB]
Get:3 http://172.17.0.1/private buster-staging/main r-bioc-rtracklayer 1.38.3-1 (diff) [26.4 kB]
Fetched 1408 kB in 0s (4994 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rtracklayer-Z2dt0d/r-bioc-rtracklayer-1.38.3' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rtracklayer-Z2dt0d' with '<<BUILDDIR>>'
+------------------------------------------------------------------------------+
| Install build-essential |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: build-essential, fakeroot
Filtered Build-Depends: build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive/sbuild-build-depends-core-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy
dpkg-scanpackages: info: Wrote 1 entries to output Packages file.
gpg: keybox '/<<BUILDDIR>>/resolver-r3jVUJ/gpg/pubring.kbx' created
gpg: /<<BUILDDIR>>/resolver-r3jVUJ/gpg/trustdb.gpg: trustdb created
gpg: key 37145E60F90AF620: public key "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" imported
gpg: Total number processed: 1
gpg: imported: 1
gpg: key 37145E60F90AF620: "Sbuild Signer (Sbuild Build Dependency Archive Key) <buildd-tools-devel@lists.alioth.debian.org>" not changed
gpg: key 37145E60F90AF620: secret key imported
gpg: Total number processed: 1
gpg: unchanged: 1
gpg: secret keys read: 1
gpg: secret keys imported: 1
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ Release [957 B]
Get:3 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ Sources [349 B]
Get:5 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ Packages [434 B]
Fetched 2110 B in 0s (10.4 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install core build dependencies (apt-based resolver)
----------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
ca-certificates dbus dbus-user-session e2fsprogs-l10n libexpat1
libnss-systemd libpam-systemd libsasl2-modules libssl1.1 openssl
systemd-sysv
Use 'apt autoremove' to remove them.
The following NEW packages will be installed:
sbuild-build-depends-core-dummy
0 upgraded, 1 newly installed, 0 to remove and 3 not upgraded.
Need to get 848 B of archives.
After this operation, 0 B of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [848 B]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 848 B in 0s (68.6 kB/s)
Selecting previously unselected package sbuild-build-depends-core-dummy.
(Reading database ... 15650 files and directories currently installed.)
Preparing to unpack .../sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-core-dummy (0.invalid.0) ...
Setting up sbuild-build-depends-core-dummy (0.invalid.0) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Check architectures |
+------------------------------------------------------------------------------+
Arch check ok (armhf included in any)
+------------------------------------------------------------------------------+
| Install package build dependencies |
+------------------------------------------------------------------------------+
Setup apt archive
-----------------
Merged Build-Depends: debhelper (>= 11~), dh-r, r-base-dev (>= 3.3), r-cran-xml, r-cran-rcurl, r-bioc-genomicalignments (>= 1.6.0), libssl-dev, pkg-config
Filtered Build-Depends: debhelper (>= 11~), dh-r, r-base-dev (>= 3.3), r-cran-xml, r-cran-rcurl, r-bioc-genomicalignments (>= 1.6.0), libssl-dev, pkg-config
dpkg-deb: building package 'sbuild-build-depends-r-bioc-rtracklayer-dummy' in '/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive/sbuild-build-depends-r-bioc-rtracklayer-dummy.deb'.
dpkg-scanpackages: warning: Packages in archive but missing from override file:
dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-r-bioc-rtracklayer-dummy
dpkg-scanpackages: info: Wrote 2 entries to output Packages file.
gpg: using "Sbuild Signer" as default secret key for signing
Ign:1 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ InRelease
Get:2 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ Release [963 B]
Get:3 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ Release.gpg [370 B]
Get:4 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ Sources [563 B]
Get:5 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ Packages [647 B]
Fetched 2543 B in 0s (12.7 kB/s)
Reading package lists...
W: No sandbox user '_apt' on the system, can not drop privileges
Reading package lists...
Install r-bioc-rtracklayer build dependencies (apt-based resolver)
------------------------------------------------------------------
Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following packages were automatically installed and are no longer required:
dbus dbus-user-session e2fsprogs-l10n libnss-systemd libpam-systemd
libsasl2-modules systemd-sysv
Use 'apt autoremove' to remove them.
The following additional packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7
groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-dev
libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2
libharfbuzz0b libice6 libicu-dev libicu57 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1
libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl-dev libssl1.0.2
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev
libtk8.6 libtool libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1
libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges
r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector
r-cran-bitops r-cran-futile.logger r-cran-futile.options r-cran-lambda.r
r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-rcurl r-cran-snow
r-cran-xml ucf unzip x11-common xauth xdg-utils zip zlib1g-dev
Suggested packages:
autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois
vacation devscripts debtags dh-make dwz gettext-doc libasprintf-dev
libgettextpo-dev gfortran-doc gfortran-7-doc libgfortran4-dbg
libcoarrays-dev groff liblapack-doc krb5-doc krb5-user icu-doc liblzma-doc
ncurses-doc readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk m4-doc apparmor
less www-browser libmail-box-perl ess r-doc-info | r-doc-pdf r-mathlib
r-base-html texlive-base texlive-latex-base texlive-generic-recommended
texlive-fonts-recommended texlive-fonts-extra texlive-extra-utils
texlive-latex-recommended texlive-latex-extra texinfo r-cran-foreach
r-cran-batchjobs r-cran-bbmisc r-cran-doparallel r-cran-rmpi
r-bioc-variantannotation r-bioc-shortread r-cran-codetools r-cran-runit
r-cran-knitr r-bioc-bsgenome r-bioc-genomicfeatures r-bioc-affy
r-bioc-genefilter r-bioc-rtracklayer r-bioc-deseq2 r-bioc-edger
r-bioc-annotationdbi r-bioc-annotate r-bioc-gviz r-bioc-annotationhub
r-cran-digest r-bioc-graph r-cran-data.table r-cran-jsonlite r-cran-testthat
r-cran-base64enc r-cran-ggplot2 r-cran-rsprng r-cran-rlecuyer
Recommended packages:
curl | wget | lynx-cur bzip2-doc libarchive-cpio-perl libglib2.0-data
shared-mime-info xdg-user-dirs krb5-locales libpng-tools publicsuffix
libssl-doc libltdl-dev libmail-sendmail-perl r-recommended r-doc-html
libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
x11-xserver-utils
The following NEW packages will be installed:
autoconf automake autopoint autotools-dev bsdmainutils cdbs dctrl-tools
debhelper dh-autoreconf dh-r dh-strip-nondeterminism file fontconfig
fontconfig-config fonts-dejavu-core gettext gettext-base gfortran gfortran-7
groff-base icu-devtools intltool-debian libarchive-zip-perl libblas-dev
libblas3 libbsd0 libbz2-dev libcairo2 libcroco3 libcurl3 libdatrie1
libfile-stripnondeterminism-perl libfontconfig1 libfreetype6
libgfortran-7-dev libgfortran4 libglib2.0-0 libgraphite2-3 libgssapi-krb5-2
libharfbuzz0b libice6 libicu-dev libicu57 libjbig0 libjpeg-dev
libjpeg62-turbo libjpeg62-turbo-dev libk5crypto3 libkeyutils1 libkrb5-3
libkrb5support0 liblapack-dev liblapack3 liblzma-dev libmagic-mgc libmagic1
libncurses5-dev libnghttp2-14 libpango-1.0-0 libpangocairo-1.0-0
libpangoft2-1.0-0 libpaper-utils libpaper1 libpcre16-3 libpcre3-dev
libpcre32-3 libpcrecpp0v5 libpipeline1 libpixman-1-0 libpng-dev libpsl5
libreadline-dev librtmp1 libsigsegv2 libsm6 libssh2-1 libssl-dev libssl1.0.2
libtcl8.6 libthai-data libthai0 libtiff5 libtimedate-perl libtinfo-dev
libtk8.6 libtool libx11-6 libx11-data libxau6 libxcb-render0 libxcb-shm0
libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1 libxss1
libxt6 m4 man-db pkg-config po-debconf r-base-core r-base-dev r-bioc-biobase
r-bioc-biocgenerics r-bioc-biocparallel r-bioc-biostrings
r-bioc-delayedarray r-bioc-genomeinfodb r-bioc-genomeinfodbdata
r-bioc-genomicalignments r-bioc-genomicranges r-bioc-iranges
r-bioc-rsamtools r-bioc-s4vectors r-bioc-summarizedexperiment r-bioc-xvector
r-cran-bitops r-cran-futile.logger r-cran-futile.options r-cran-lambda.r
r-cran-lattice r-cran-matrix r-cran-matrixstats r-cran-rcurl r-cran-snow
r-cran-xml sbuild-build-depends-r-bioc-rtracklayer-dummy ucf unzip
x11-common xauth xdg-utils zip zlib1g-dev
0 upgraded, 138 newly installed, 0 to remove and 3 not upgraded.
Need to get 99.1 MB/139 MB of archives.
After this operation, 324 MB of additional disk space will be used.
Get:1 copy:/<<BUILDDIR>>/resolver-r3jVUJ/apt_archive ./ sbuild-build-depends-r-bioc-rtracklayer-dummy 0.invalid.0 [932 B]
Get:2 http://172.17.0.1/private buster-staging/main armhf bsdmainutils armhf 11.1.2 [182 kB]
Get:3 http://172.17.0.1/private buster-staging/main armhf groff-base armhf 1.22.3-10 [1005 kB]
Get:4 http://172.17.0.1/private buster-staging/main armhf libpipeline1 armhf 1.5.0-1 [24.6 kB]
Get:5 http://172.17.0.1/private buster-staging/main armhf man-db armhf 2.8.2-1 [1145 kB]
Get:6 http://172.17.0.1/private buster-staging/main armhf libssl1.0.2 armhf 1.0.2n-1 [887 kB]
Get:7 http://172.17.0.1/private buster-staging/main armhf gettext-base armhf 0.19.8.1-4 [117 kB]
Get:8 http://172.17.0.1/private buster-staging/main armhf libsigsegv2 armhf 2.12-1 [32.2 kB]
Get:9 http://172.17.0.1/private buster-staging/main armhf m4 armhf 1.4.18-1 [185 kB]
Get:10 http://172.17.0.1/private buster-staging/main armhf autoconf all 2.69-11 [341 kB]
Get:11 http://172.17.0.1/private buster-staging/main armhf autotools-dev all 20180224.1 [77.0 kB]
Get:12 http://172.17.0.1/private buster-staging/main armhf automake all 1:1.15.1-3 [736 kB]
Get:13 http://172.17.0.1/private buster-staging/main armhf autopoint all 0.19.8.1-4 [434 kB]
Get:14 http://172.17.0.1/private buster-staging/main armhf cdbs all 0.4.156 [83.1 kB]
Get:15 http://172.17.0.1/private buster-staging/main armhf dctrl-tools armhf 2.24-2 [94.4 kB]
Get:16 http://172.17.0.1/private buster-staging/main armhf libtool all 2.4.6-2 [545 kB]
Get:17 http://172.17.0.1/private buster-staging/main armhf dh-autoreconf all 16 [16.3 kB]
Get:18 http://172.17.0.1/private buster-staging/main armhf libarchive-zip-perl all 1.60-1 [95.6 kB]
Get:19 http://172.17.0.1/private buster-staging/main armhf libfile-stripnondeterminism-perl all 0.040-1 [18.4 kB]
Get:20 http://172.17.0.1/private buster-staging/main armhf libtimedate-perl all 2.3000-2 [42.2 kB]
Get:21 http://172.17.0.1/private buster-staging/main armhf dh-strip-nondeterminism all 0.040-1 [11.8 kB]
Get:22 http://172.17.0.1/private buster-staging/main armhf gettext armhf 0.19.8.1-4 [1218 kB]
Get:23 http://172.17.0.1/private buster-staging/main armhf intltool-debian all 0.35.0+20060710.4 [26.3 kB]
Get:24 http://172.17.0.1/private buster-staging/main armhf po-debconf all 1.0.20 [247 kB]
Get:25 http://172.17.0.1/private buster-staging/main armhf debhelper all 11.1.5 [1007 kB]
Get:26 http://172.17.0.1/private buster-staging/main armhf zip armhf 3.0-11 [212 kB]
Get:27 http://172.17.0.1/private buster-staging/main armhf unzip armhf 6.0-21 [149 kB]
Get:28 http://172.17.0.1/private buster-staging/main armhf libpaper1 armhf 1.1.24+nmu5 [20.8 kB]
Get:29 http://172.17.0.1/private buster-staging/main armhf libpaper-utils armhf 1.1.24+nmu5 [17.2 kB]
Get:30 http://172.17.0.1/private buster-staging/main armhf xdg-utils all 1.1.2-2 [72.8 kB]
Get:31 http://172.17.0.1/private buster-staging/main armhf libgfortran4 armhf 7.3.0-11 [191 kB]
Get:32 http://172.17.0.1/private buster-staging/main armhf libcurl3 armhf 7.58.0-2 [276 kB]
Get:33 http://172.17.0.1/private buster-staging/main armhf r-base-core armhf 3.4.4-1 [23.0 MB]
Get:34 http://172.17.0.1/private buster-staging/main armhf libgfortran-7-dev armhf 7.3.0-11 [232 kB]
Get:35 http://172.17.0.1/private buster-staging/main armhf gfortran-7 armhf 7.3.0-11 [5456 kB]
Get:36 http://172.17.0.1/private buster-staging/main armhf gfortran armhf 4:7.2.0-1d1 [1352 B]
Get:37 http://172.17.0.1/private buster-staging/main armhf libblas-dev armhf 3.7.1-4 [112 kB]
Get:38 http://172.17.0.1/private buster-staging/main armhf liblapack-dev armhf 3.7.1-4 [1564 kB]
Get:39 http://172.17.0.1/private buster-staging/main armhf libtinfo-dev armhf 6.1-1 [66.6 kB]
Get:40 http://172.17.0.1/private buster-staging/main armhf libncurses5-dev armhf 6.1-1 [152 kB]
Get:41 http://172.17.0.1/private buster-staging/main armhf libreadline-dev armhf 7.0-3 [109 kB]
Get:42 http://172.17.0.1/private buster-staging/main armhf libpcre16-3 armhf 2:8.39-9 [234 kB]
Get:43 http://172.17.0.1/private buster-staging/main armhf libpcre32-3 armhf 2:8.39-9 [226 kB]
Get:44 http://172.17.0.1/private buster-staging/main armhf libpcrecpp0v5 armhf 2:8.39-9 [150 kB]
Get:45 http://172.17.0.1/private buster-staging/main armhf libpcre3-dev armhf 2:8.39-9 [561 kB]
Get:46 http://172.17.0.1/private buster-staging/main armhf libbz2-dev armhf 1.0.6-8.1 [26.9 kB]
Get:47 http://172.17.0.1/private buster-staging/main armhf libxmuu1 armhf 2:1.1.2-2 [23.0 kB]
Get:48 http://172.17.0.1/private buster-staging/main armhf xauth armhf 1:1.0.10-1 [36.4 kB]
Get:49 http://172.17.0.1/private buster-staging/main armhf r-base-dev all 3.4.4-1 [4488 B]
Get:50 http://172.17.0.1/private buster-staging/main armhf dh-r all 20171201 [10.0 kB]
Get:51 http://172.17.0.1/private buster-staging/main armhf libssl-dev armhf 1.1.0g-2 [1371 kB]
Get:52 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocgenerics all 0.24.0-1 [567 kB]
Get:53 http://172.17.0.1/private buster-staging/main armhf r-bioc-biobase armhf 2.38.0-1 [2024 kB]
Get:54 http://172.17.0.1/private buster-staging/main armhf r-cran-lambda.r all 1.2-1 [86.3 kB]
Get:55 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.options all 1.0.0-3 [15.6 kB]
Get:56 http://172.17.0.1/private buster-staging/main armhf r-cran-futile.logger all 1.4.3-2 [93.8 kB]
Get:57 http://172.17.0.1/private buster-staging/main armhf r-cran-snow all 1:0.4.2-1.1 [65.4 kB]
Get:58 http://172.17.0.1/private buster-staging/main armhf r-bioc-biocparallel armhf 1.12.0-2 [765 kB]
Get:59 http://172.17.0.1/private buster-staging/main armhf r-bioc-s4vectors armhf 0.16.0-1 [1163 kB]
Get:60 http://172.17.0.1/private buster-staging/main armhf r-bioc-iranges armhf 2.12.0-2 [1467 kB]
Get:61 http://172.17.0.1/private buster-staging/main armhf r-bioc-xvector armhf 0.18.0-1 [367 kB]
Get:62 http://172.17.0.1/private buster-staging/main armhf r-bioc-biostrings armhf 2.46.0-1 [13.6 MB]
Get:63 http://172.17.0.1/private buster-staging/main armhf r-cran-matrixstats armhf 0.53.1-1 [560 kB]
Get:64 http://172.17.0.1/private buster-staging/main armhf r-bioc-delayedarray all 0.4.1-1 [615 kB]
Get:65 http://172.17.0.1/private buster-staging/main armhf r-cran-bitops armhf 1.0-6-3 [22.5 kB]
Get:66 http://172.17.0.1/private buster-staging/main armhf r-cran-rcurl armhf 1.95-4.8-4 [617 kB]
Get:67 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodbdata all 1.0.0-1 [18.0 MB]
Get:68 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomeinfodb all 1.14.0-1 [3529 kB]
Get:69 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicranges armhf 1.30.0-1 [1575 kB]
Get:70 http://172.17.0.1/private buster-staging/main armhf r-cran-lattice armhf 0.20-35-1+b1 [723 kB]
Get:71 http://172.17.0.1/private buster-staging/main armhf r-cran-matrix armhf 1.2-12-1 [2329 kB]
Get:72 http://172.17.0.1/private buster-staging/main armhf r-bioc-summarizedexperiment all 1.8.1-1 [1592 kB]
Get:73 http://172.17.0.1/private buster-staging/main armhf r-bioc-rsamtools armhf 1.30.0-1 [3278 kB]
Get:74 http://172.17.0.1/private buster-staging/main armhf r-bioc-genomicalignments armhf 1.14.1-1 [1693 kB]
Get:75 http://172.17.0.1/private buster-staging/main armhf r-cran-xml armhf 3.98-1.10-1 [1668 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 99.1 MB in 25s (3999 kB/s)
Selecting previously unselected package libbsd0:armhf.
(Reading database ... 15650 files and directories currently installed.)
Preparing to unpack .../000-libbsd0_0.8.7-1_armhf.deb ...
Unpacking libbsd0:armhf (0.8.7-1) ...
Selecting previously unselected package bsdmainutils.
Preparing to unpack .../001-bsdmainutils_11.1.2_armhf.deb ...
Unpacking bsdmainutils (11.1.2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../002-groff-base_1.22.3-10_armhf.deb ...
Unpacking groff-base (1.22.3-10) ...
Selecting previously unselected package libpipeline1:armhf.
Preparing to unpack .../003-libpipeline1_1.5.0-1_armhf.deb ...
Unpacking libpipeline1:armhf (1.5.0-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../004-man-db_2.8.2-1_armhf.deb ...
Unpacking man-db (2.8.2-1) ...
Selecting previously unselected package libfreetype6:armhf.
Preparing to unpack .../005-libfreetype6_2.8.1-2_armhf.deb ...
Unpacking libfreetype6:armhf (2.8.1-2) ...
Selecting previously unselected package ucf.
Preparing to unpack .../006-ucf_3.0038_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0038) ...
Selecting previously unselected package fonts-dejavu-core.
Preparing to unpack .../007-fonts-dejavu-core_2.37-1_all.deb ...
Unpacking fonts-dejavu-core (2.37-1) ...
Selecting previously unselected package fontconfig-config.
Preparing to unpack .../008-fontconfig-config_2.12.6-0.1_all.deb ...
Unpacking fontconfig-config (2.12.6-0.1) ...
Selecting previously unselected package libfontconfig1:armhf.
Preparing to unpack .../009-libfontconfig1_2.12.6-0.1_armhf.deb ...
Unpacking libfontconfig1:armhf (2.12.6-0.1) ...
Selecting previously unselected package fontconfig.
Preparing to unpack .../010-fontconfig_2.12.6-0.1_armhf.deb ...
Unpacking fontconfig (2.12.6-0.1) ...
Selecting previously unselected package libxau6:armhf.
Preparing to unpack .../011-libxau6_1%3a1.0.8-1+b2_armhf.deb ...
Unpacking libxau6:armhf (1:1.0.8-1+b2) ...
Selecting previously unselected package libxdmcp6:armhf.
Preparing to unpack .../012-libxdmcp6_1%3a1.1.2-3_armhf.deb ...
Unpacking libxdmcp6:armhf (1:1.1.2-3) ...
Selecting previously unselected package libxcb1:armhf.
Preparing to unpack .../013-libxcb1_1.13-1_armhf.deb ...
Unpacking libxcb1:armhf (1.13-1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../014-libx11-data_2%3a1.6.4-3_all.deb ...
Unpacking libx11-data (2:1.6.4-3) ...
Selecting previously unselected package libx11-6:armhf.
Preparing to unpack .../015-libx11-6_2%3a1.6.4-3_armhf.deb ...
Unpacking libx11-6:armhf (2:1.6.4-3) ...
Selecting previously unselected package libxext6:armhf.
Preparing to unpack .../016-libxext6_2%3a1.3.3-1+b2_armhf.deb ...
Unpacking libxext6:armhf (2:1.3.3-1+b2) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../017-x11-common_1%3a7.7+19_all.deb ...
Unpacking x11-common (1:7.7+19) ...
Selecting previously unselected package libxss1:armhf.
Preparing to unpack .../018-libxss1_1%3a1.2.2-1_armhf.deb ...
Unpacking libxss1:armhf (1:1.2.2-1) ...
Selecting previously unselected package libssl1.0.2:armhf.
Preparing to unpack .../019-libssl1.0.2_1.0.2n-1_armhf.deb ...
Unpacking libssl1.0.2:armhf (1.0.2n-1) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../020-libmagic-mgc_1%3a5.32-2_armhf.deb ...
Unpacking libmagic-mgc (1:5.32-2) ...
Selecting previously unselected package libmagic1:armhf.
Preparing to unpack .../021-libmagic1_1%3a5.32-2_armhf.deb ...
Unpacking libmagic1:armhf (1:5.32-2) ...
Selecting previously unselected package file.
Preparing to unpack .../022-file_1%3a5.32-2_armhf.deb ...
Unpacking file (1:5.32-2) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../023-gettext-base_0.19.8.1-4_armhf.deb ...
Unpacking gettext-base (0.19.8.1-4) ...
Selecting previously unselected package libkeyutils1:armhf.
Preparing to unpack .../024-libkeyutils1_1.5.9-9.2_armhf.deb ...
Unpacking libkeyutils1:armhf (1.5.9-9.2) ...
Selecting previously unselected package libsigsegv2:armhf.
Preparing to unpack .../025-libsigsegv2_2.12-1_armhf.deb ...
Unpacking libsigsegv2:armhf (2.12-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../026-m4_1.4.18-1_armhf.deb ...
Unpacking m4 (1.4.18-1) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../027-autoconf_2.69-11_all.deb ...
Unpacking autoconf (2.69-11) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../028-autotools-dev_20180224.1_all.deb ...
Unpacking autotools-dev (20180224.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../029-automake_1%3a1.15.1-3_all.deb ...
Unpacking automake (1:1.15.1-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../030-autopoint_0.19.8.1-4_all.deb ...
Unpacking autopoint (0.19.8.1-4) ...
Selecting previously unselected package cdbs.
Preparing to unpack .../031-cdbs_0.4.156_all.deb ...
Unpacking cdbs (0.4.156) ...
Selecting previously unselected package dctrl-tools.
Preparing to unpack .../032-dctrl-tools_2.24-2_armhf.deb ...
Unpacking dctrl-tools (2.24-2) ...
Selecting previously unselected package libtool.
Preparing to unpack .../033-libtool_2.4.6-2_all.deb ...
Unpacking libtool (2.4.6-2) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../034-dh-autoreconf_16_all.deb ...
Unpacking dh-autoreconf (16) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../035-libarchive-zip-perl_1.60-1_all.deb ...
Unpacking libarchive-zip-perl (1.60-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../036-libfile-stripnondeterminism-perl_0.040-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (0.040-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../037-libtimedate-perl_2.3000-2_all.deb ...
Unpacking libtimedate-perl (2.3000-2) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../038-dh-strip-nondeterminism_0.040-1_all.deb ...
Unpacking dh-strip-nondeterminism (0.040-1) ...
Selecting previously unselected package libglib2.0-0:armhf.
Preparing to unpack .../039-libglib2.0-0_2.54.3-2_armhf.deb ...
Unpacking libglib2.0-0:armhf (2.54.3-2) ...
Selecting previously unselected package libicu57:armhf.
Preparing to unpack .../040-libicu57_57.1-9_armhf.deb ...
Unpacking libicu57:armhf (57.1-9) ...
Selecting previously unselected package libxml2:armhf.
Preparing to unpack .../041-libxml2_2.9.4+dfsg1-6.1_armhf.deb ...
Unpacking libxml2:armhf (2.9.4+dfsg1-6.1) ...
Selecting previously unselected package libcroco3:armhf.
Preparing to unpack .../042-libcroco3_0.6.12-2_armhf.deb ...
Unpacking libcroco3:armhf (0.6.12-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../043-gettext_0.19.8.1-4_armhf.deb ...
Unpacking gettext (0.19.8.1-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../044-intltool-debian_0.35.0+20060710.4_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.4) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../045-po-debconf_1.0.20_all.deb ...
Unpacking po-debconf (1.0.20) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../046-debhelper_11.1.5_all.deb ...
Unpacking debhelper (11.1.5) ...
Selecting previously unselected package zip.
Preparing to unpack .../047-zip_3.0-11_armhf.deb ...
Unpacking zip (3.0-11) ...
Selecting previously unselected package unzip.
Preparing to unpack .../048-unzip_6.0-21_armhf.deb ...
Unpacking unzip (6.0-21) ...
Selecting previously unselected package libpaper1:armhf.
Preparing to unpack .../049-libpaper1_1.1.24+nmu5_armhf.deb ...
Unpacking libpaper1:armhf (1.1.24+nmu5) ...
Selecting previously unselected package libpaper-utils.
Preparing to unpack .../050-libpaper-utils_1.1.24+nmu5_armhf.deb ...
Unpacking libpaper-utils (1.1.24+nmu5) ...
Selecting previously unselected package xdg-utils.
Preparing to unpack .../051-xdg-utils_1.1.2-2_all.deb ...
Unpacking xdg-utils (1.1.2-2) ...
Selecting previously unselected package libgfortran4:armhf.
Preparing to unpack .../052-libgfortran4_7.3.0-11_armhf.deb ...
Unpacking libgfortran4:armhf (7.3.0-11) ...
Selecting previously unselected package libblas3:armhf.
Preparing to unpack .../053-libblas3_3.7.1-4_armhf.deb ...
Unpacking libblas3:armhf (3.7.1-4) ...
Selecting previously unselected package libpixman-1-0:armhf.
Preparing to unpack .../054-libpixman-1-0_0.34.0-2_armhf.deb ...
Unpacking libpixman-1-0:armhf (0.34.0-2) ...
Selecting previously unselected package libxcb-render0:armhf.
Preparing to unpack .../055-libxcb-render0_1.13-1_armhf.deb ...
Unpacking libxcb-render0:armhf (1.13-1) ...
Selecting previously unselected package libxcb-shm0:armhf.
Preparing to unpack .../056-libxcb-shm0_1.13-1_armhf.deb ...
Unpacking libxcb-shm0:armhf (1.13-1) ...
Selecting previously unselected package libxrender1:armhf.
Preparing to unpack .../057-libxrender1_1%3a0.9.10-1_armhf.deb ...
Unpacking libxrender1:armhf (1:0.9.10-1) ...
Selecting previously unselected package libcairo2:armhf.
Preparing to unpack .../058-libcairo2_1.15.10-1_armhf.deb ...
Unpacking libcairo2:armhf (1.15.10-1) ...
Selecting previously unselected package libkrb5support0:armhf.
Preparing to unpack .../059-libkrb5support0_1.16-2_armhf.deb ...
Unpacking libkrb5support0:armhf (1.16-2) ...
Selecting previously unselected package libk5crypto3:armhf.
Preparing to unpack .../060-libk5crypto3_1.16-2_armhf.deb ...
Unpacking libk5crypto3:armhf (1.16-2) ...
Selecting previously unselected package libkrb5-3:armhf.
Preparing to unpack .../061-libkrb5-3_1.16-2_armhf.deb ...
Unpacking libkrb5-3:armhf (1.16-2) ...
Selecting previously unselected package libgssapi-krb5-2:armhf.
Preparing to unpack .../062-libgssapi-krb5-2_1.16-2_armhf.deb ...
Unpacking libgssapi-krb5-2:armhf (1.16-2) ...
Selecting previously unselected package libnghttp2-14:armhf.
Preparing to unpack .../063-libnghttp2-14_1.31.0-1_armhf.deb ...
Unpacking libnghttp2-14:armhf (1.31.0-1) ...
Selecting previously unselected package libpsl5:armhf.
Preparing to unpack .../064-libpsl5_0.19.1-5_armhf.deb ...
Unpacking libpsl5:armhf (0.19.1-5) ...
Selecting previously unselected package librtmp1:armhf.
Preparing to unpack .../065-librtmp1_2.4+20151223.gitfa8646d.1-1_armhf.deb ...
Unpacking librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Selecting previously unselected package libssh2-1:armhf.
Preparing to unpack .../066-libssh2-1_1.8.0-1_armhf.deb ...
Unpacking libssh2-1:armhf (1.8.0-1) ...
Selecting previously unselected package libcurl3:armhf.
Preparing to unpack .../067-libcurl3_7.58.0-2_armhf.deb ...
Unpacking libcurl3:armhf (7.58.0-2) ...
Selecting previously unselected package libice6:armhf.
Preparing to unpack .../068-libice6_2%3a1.0.9-2_armhf.deb ...
Unpacking libice6:armhf (2:1.0.9-2) ...
Selecting previously unselected package libjpeg62-turbo:armhf.
Preparing to unpack .../069-libjpeg62-turbo_1%3a1.5.2-2+b1_armhf.deb ...
Unpacking libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Selecting previously unselected package liblapack3:armhf.
Preparing to unpack .../070-liblapack3_3.7.1-4_armhf.deb ...
Unpacking liblapack3:armhf (3.7.1-4) ...
Selecting previously unselected package libthai-data.
Preparing to unpack .../071-libthai-data_0.1.27-2_all.deb ...
Unpacking libthai-data (0.1.27-2) ...
Selecting previously unselected package libdatrie1:armhf.
Preparing to unpack .../072-libdatrie1_0.2.10-7_armhf.deb ...
Unpacking libdatrie1:armhf (0.2.10-7) ...
Selecting previously unselected package libthai0:armhf.
Preparing to unpack .../073-libthai0_0.1.27-2_armhf.deb ...
Unpacking libthai0:armhf (0.1.27-2) ...
Selecting previously unselected package libpango-1.0-0:armhf.
Preparing to unpack .../074-libpango-1.0-0_1.40.14-1_armhf.deb ...
Unpacking libpango-1.0-0:armhf (1.40.14-1) ...
Selecting previously unselected package libgraphite2-3:armhf.
Preparing to unpack .../075-libgraphite2-3_1.3.11-2_armhf.deb ...
Unpacking libgraphite2-3:armhf (1.3.11-2) ...
Selecting previously unselected package libharfbuzz0b:armhf.
Preparing to unpack .../076-libharfbuzz0b_1.7.2-1_armhf.deb ...
Unpacking libharfbuzz0b:armhf (1.7.2-1) ...
Selecting previously unselected package libpangoft2-1.0-0:armhf.
Preparing to unpack .../077-libpangoft2-1.0-0_1.40.14-1_armhf.deb ...
Unpacking libpangoft2-1.0-0:armhf (1.40.14-1) ...
Selecting previously unselected package libpangocairo-1.0-0:armhf.
Preparing to unpack .../078-libpangocairo-1.0-0_1.40.14-1_armhf.deb ...
Unpacking libpangocairo-1.0-0:armhf (1.40.14-1) ...
Selecting previously unselected package libsm6:armhf.
Preparing to unpack .../079-libsm6_2%3a1.2.2-1+b3_armhf.deb ...
Unpacking libsm6:armhf (2:1.2.2-1+b3) ...
Selecting previously unselected package libtcl8.6:armhf.
Preparing to unpack .../080-libtcl8.6_8.6.8+dfsg-3_armhf.deb ...
Unpacking libtcl8.6:armhf (8.6.8+dfsg-3) ...
Selecting previously unselected package libjbig0:armhf.
Preparing to unpack .../081-libjbig0_2.1-3.1+b2_armhf.deb ...
Unpacking libjbig0:armhf (2.1-3.1+b2) ...
Selecting previously unselected package libtiff5:armhf.
Preparing to unpack .../082-libtiff5_4.0.9-4_armhf.deb ...
Unpacking libtiff5:armhf (4.0.9-4) ...
Selecting previously unselected package libxft2:armhf.
Preparing to unpack .../083-libxft2_2.3.2-1+b2_armhf.deb ...
Unpacking libxft2:armhf (2.3.2-1+b2) ...
Selecting previously unselected package libtk8.6:armhf.
Preparing to unpack .../084-libtk8.6_8.6.8-3_armhf.deb ...
Unpacking libtk8.6:armhf (8.6.8-3) ...
Selecting previously unselected package libxt6:armhf.
Preparing to unpack .../085-libxt6_1%3a1.1.5-1_armhf.deb ...
Unpacking libxt6:armhf (1:1.1.5-1) ...
Selecting previously unselected package r-base-core.
Preparing to unpack .../086-r-base-core_3.4.4-1_armhf.deb ...
Unpacking r-base-core (3.4.4-1) ...
Selecting previously unselected package libgfortran-7-dev:armhf.
Preparing to unpack .../087-libgfortran-7-dev_7.3.0-11_armhf.deb ...
Unpacking libgfortran-7-dev:armhf (7.3.0-11) ...
Selecting previously unselected package gfortran-7.
Preparing to unpack .../088-gfortran-7_7.3.0-11_armhf.deb ...
Unpacking gfortran-7 (7.3.0-11) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../089-gfortran_4%3a7.2.0-1d1_armhf.deb ...
Unpacking gfortran (4:7.2.0-1d1) ...
Selecting previously unselected package libblas-dev:armhf.
Preparing to unpack .../090-libblas-dev_3.7.1-4_armhf.deb ...
Unpacking libblas-dev:armhf (3.7.1-4) ...
Selecting previously unselected package liblapack-dev:armhf.
Preparing to unpack .../091-liblapack-dev_3.7.1-4_armhf.deb ...
Unpacking liblapack-dev:armhf (3.7.1-4) ...
Selecting previously unselected package libtinfo-dev:armhf.
Preparing to unpack .../092-libtinfo-dev_6.1-1_armhf.deb ...
Unpacking libtinfo-dev:armhf (6.1-1) ...
Selecting previously unselected package libncurses5-dev:armhf.
Preparing to unpack .../093-libncurses5-dev_6.1-1_armhf.deb ...
Unpacking libncurses5-dev:armhf (6.1-1) ...
Selecting previously unselected package libreadline-dev:armhf.
Preparing to unpack .../094-libreadline-dev_7.0-3_armhf.deb ...
Unpacking libreadline-dev:armhf (7.0-3) ...
Selecting previously unselected package libjpeg62-turbo-dev:armhf.
Preparing to unpack .../095-libjpeg62-turbo-dev_1%3a1.5.2-2+b1_armhf.deb ...
Unpacking libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Selecting previously unselected package libjpeg-dev.
Preparing to unpack .../096-libjpeg-dev_1%3a1.5.2-2_all.deb ...
Unpacking libjpeg-dev (1:1.5.2-2) ...
Selecting previously unselected package libpcre16-3:armhf.
Preparing to unpack .../097-libpcre16-3_2%3a8.39-9_armhf.deb ...
Unpacking libpcre16-3:armhf (2:8.39-9) ...
Selecting previously unselected package libpcre32-3:armhf.
Preparing to unpack .../098-libpcre32-3_2%3a8.39-9_armhf.deb ...
Unpacking libpcre32-3:armhf (2:8.39-9) ...
Selecting previously unselected package libpcrecpp0v5:armhf.
Preparing to unpack .../099-libpcrecpp0v5_2%3a8.39-9_armhf.deb ...
Unpacking libpcrecpp0v5:armhf (2:8.39-9) ...
Selecting previously unselected package libpcre3-dev:armhf.
Preparing to unpack .../100-libpcre3-dev_2%3a8.39-9_armhf.deb ...
Unpacking libpcre3-dev:armhf (2:8.39-9) ...
Selecting previously unselected package zlib1g-dev:armhf.
Preparing to unpack .../101-zlib1g-dev_1%3a1.2.8.dfsg-5_armhf.deb ...
Unpacking zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Selecting previously unselected package libpng-dev:armhf.
Preparing to unpack .../102-libpng-dev_1.6.34-1_armhf.deb ...
Unpacking libpng-dev:armhf (1.6.34-1) ...
Selecting previously unselected package libbz2-dev:armhf.
Preparing to unpack .../103-libbz2-dev_1.0.6-8.1_armhf.deb ...
Unpacking libbz2-dev:armhf (1.0.6-8.1) ...
Selecting previously unselected package liblzma-dev:armhf.
Preparing to unpack .../104-liblzma-dev_5.2.2-1.3_armhf.deb ...
Unpacking liblzma-dev:armhf (5.2.2-1.3) ...
Selecting previously unselected package icu-devtools.
Preparing to unpack .../105-icu-devtools_57.1-9_armhf.deb ...
Unpacking icu-devtools (57.1-9) ...
Selecting previously unselected package libicu-dev.
Preparing to unpack .../106-libicu-dev_57.1-9_armhf.deb ...
Unpacking libicu-dev (57.1-9) ...
Selecting previously unselected package libxmuu1:armhf.
Preparing to unpack .../107-libxmuu1_2%3a1.1.2-2_armhf.deb ...
Unpacking libxmuu1:armhf (2:1.1.2-2) ...
Selecting previously unselected package xauth.
Preparing to unpack .../108-xauth_1%3a1.0.10-1_armhf.deb ...
Unpacking xauth (1:1.0.10-1) ...
Selecting previously unselected package pkg-config.
Preparing to unpack .../109-pkg-config_0.29-4_armhf.deb ...
Unpacking pkg-config (0.29-4) ...
Selecting previously unselected package r-base-dev.
Preparing to unpack .../110-r-base-dev_3.4.4-1_all.deb ...
Unpacking r-base-dev (3.4.4-1) ...
Selecting previously unselected package dh-r.
Preparing to unpack .../111-dh-r_20171201_all.deb ...
Unpacking dh-r (20171201) ...
Selecting previously unselected package libssl-dev:armhf.
Preparing to unpack .../112-libssl-dev_1.1.0g-2_armhf.deb ...
Unpacking libssl-dev:armhf (1.1.0g-2) ...
Selecting previously unselected package r-bioc-biocgenerics.
Preparing to unpack .../113-r-bioc-biocgenerics_0.24.0-1_all.deb ...
Unpacking r-bioc-biocgenerics (0.24.0-1) ...
Selecting previously unselected package r-bioc-biobase.
Preparing to unpack .../114-r-bioc-biobase_2.38.0-1_armhf.deb ...
Unpacking r-bioc-biobase (2.38.0-1) ...
Selecting previously unselected package r-cran-lambda.r.
Preparing to unpack .../115-r-cran-lambda.r_1.2-1_all.deb ...
Unpacking r-cran-lambda.r (1.2-1) ...
Selecting previously unselected package r-cran-futile.options.
Preparing to unpack .../116-r-cran-futile.options_1.0.0-3_all.deb ...
Unpacking r-cran-futile.options (1.0.0-3) ...
Selecting previously unselected package r-cran-futile.logger.
Preparing to unpack .../117-r-cran-futile.logger_1.4.3-2_all.deb ...
Unpacking r-cran-futile.logger (1.4.3-2) ...
Selecting previously unselected package r-cran-snow.
Preparing to unpack .../118-r-cran-snow_1%3a0.4.2-1.1_all.deb ...
Unpacking r-cran-snow (1:0.4.2-1.1) ...
Selecting previously unselected package r-bioc-biocparallel.
Preparing to unpack .../119-r-bioc-biocparallel_1.12.0-2_armhf.deb ...
Unpacking r-bioc-biocparallel (1.12.0-2) ...
Selecting previously unselected package r-bioc-s4vectors.
Preparing to unpack .../120-r-bioc-s4vectors_0.16.0-1_armhf.deb ...
Unpacking r-bioc-s4vectors (0.16.0-1) ...
Selecting previously unselected package r-bioc-iranges.
Preparing to unpack .../121-r-bioc-iranges_2.12.0-2_armhf.deb ...
Unpacking r-bioc-iranges (2.12.0-2) ...
Selecting previously unselected package r-bioc-xvector.
Preparing to unpack .../122-r-bioc-xvector_0.18.0-1_armhf.deb ...
Unpacking r-bioc-xvector (0.18.0-1) ...
Selecting previously unselected package r-bioc-biostrings.
Preparing to unpack .../123-r-bioc-biostrings_2.46.0-1_armhf.deb ...
Unpacking r-bioc-biostrings (2.46.0-1) ...
Selecting previously unselected package r-cran-matrixstats.
Preparing to unpack .../124-r-cran-matrixstats_0.53.1-1_armhf.deb ...
Unpacking r-cran-matrixstats (0.53.1-1) ...
Selecting previously unselected package r-bioc-delayedarray.
Preparing to unpack .../125-r-bioc-delayedarray_0.4.1-1_all.deb ...
Unpacking r-bioc-delayedarray (0.4.1-1) ...
Selecting previously unselected package r-cran-bitops.
Preparing to unpack .../126-r-cran-bitops_1.0-6-3_armhf.deb ...
Unpacking r-cran-bitops (1.0-6-3) ...
Selecting previously unselected package r-cran-rcurl.
Preparing to unpack .../127-r-cran-rcurl_1.95-4.8-4_armhf.deb ...
Unpacking r-cran-rcurl (1.95-4.8-4) ...
Selecting previously unselected package r-bioc-genomeinfodbdata.
Preparing to unpack .../128-r-bioc-genomeinfodbdata_1.0.0-1_all.deb ...
Unpacking r-bioc-genomeinfodbdata (1.0.0-1) ...
Selecting previously unselected package r-bioc-genomeinfodb.
Preparing to unpack .../129-r-bioc-genomeinfodb_1.14.0-1_all.deb ...
Unpacking r-bioc-genomeinfodb (1.14.0-1) ...
Selecting previously unselected package r-bioc-genomicranges.
Preparing to unpack .../130-r-bioc-genomicranges_1.30.0-1_armhf.deb ...
Unpacking r-bioc-genomicranges (1.30.0-1) ...
Selecting previously unselected package r-cran-lattice.
Preparing to unpack .../131-r-cran-lattice_0.20-35-1+b1_armhf.deb ...
Unpacking r-cran-lattice (0.20-35-1+b1) ...
Selecting previously unselected package r-cran-matrix.
Preparing to unpack .../132-r-cran-matrix_1.2-12-1_armhf.deb ...
Unpacking r-cran-matrix (1.2-12-1) ...
Selecting previously unselected package r-bioc-summarizedexperiment.
Preparing to unpack .../133-r-bioc-summarizedexperiment_1.8.1-1_all.deb ...
Unpacking r-bioc-summarizedexperiment (1.8.1-1) ...
Selecting previously unselected package r-bioc-rsamtools.
Preparing to unpack .../134-r-bioc-rsamtools_1.30.0-1_armhf.deb ...
Unpacking r-bioc-rsamtools (1.30.0-1) ...
Selecting previously unselected package r-bioc-genomicalignments.
Preparing to unpack .../135-r-bioc-genomicalignments_1.14.1-1_armhf.deb ...
Unpacking r-bioc-genomicalignments (1.14.1-1) ...
Selecting previously unselected package r-cran-xml.
Preparing to unpack .../136-r-cran-xml_3.98-1.10-1_armhf.deb ...
Unpacking r-cran-xml (3.98-1.10-1) ...
Selecting previously unselected package sbuild-build-depends-r-bioc-rtracklayer-dummy.
Preparing to unpack .../137-sbuild-build-depends-r-bioc-rtracklayer-dummy_0.invalid.0_armhf.deb ...
Unpacking sbuild-build-depends-r-bioc-rtracklayer-dummy (0.invalid.0) ...
Setting up cdbs (0.4.156) ...
Setting up libbz2-dev:armhf (1.0.6-8.1) ...
Setting up libjpeg62-turbo:armhf (1:1.5.2-2+b1) ...
Setting up libarchive-zip-perl (1.60-1) ...
Setting up libnghttp2-14:armhf (1.31.0-1) ...
Setting up libgfortran4:armhf (7.3.0-11) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libjbig0:armhf (2.1-3.1+b2) ...
Setting up libsigsegv2:armhf (2.12-1) ...
Setting up fonts-dejavu-core (2.37-1) ...
Setting up libpsl5:armhf (0.19.1-5) ...
Setting up libssl-dev:armhf (1.1.0g-2) ...
Setting up groff-base (1.22.3-10) ...
Setting up libglib2.0-0:armhf (2.54.3-2) ...
No schema files found: removed existing output file.
Setting up unzip (6.0-21) ...
Setting up libtinfo-dev:armhf (6.1-1) ...
Setting up dctrl-tools (2.24-2) ...
Setting up libdatrie1:armhf (0.2.10-7) ...
Setting up libtiff5:armhf (4.0.9-4) ...
Setting up gettext-base (0.19.8.1-4) ...
Setting up libpipeline1:armhf (1.5.0-1) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-1) ...
Setting up m4 (1.4.18-1) ...
Setting up libicu57:armhf (57.1-9) ...
Setting up libbsd0:armhf (0.8.7-1) ...
Setting up ucf (3.0038) ...
Setting up libxml2:armhf (2.9.4+dfsg1-6.1) ...
Setting up zip (3.0-11) ...
Setting up libfreetype6:armhf (2.8.1-2) ...
Setting up libmagic-mgc (1:5.32-2) ...
Setting up libmagic1:armhf (1:5.32-2) ...
Setting up libgraphite2-3:armhf (1.3.11-2) ...
Setting up libcroco3:armhf (0.6.12-2) ...
Setting up libncurses5-dev:armhf (6.1-1) ...
Setting up libssl1.0.2:armhf (1.0.2n-1) ...
Setting up pkg-config (0.29-4) ...
Setting up libpixman-1-0:armhf (0.34.0-2) ...
Setting up libblas3:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libssh2-1:armhf (1.8.0-1) ...
Processing triggers for libc-bin (2.27-2+rpi1) ...
Setting up autotools-dev (20180224.1) ...
Processing triggers for systemd (238-2) ...
Setting up libgfortran-7-dev:armhf (7.3.0-11) ...
Setting up libreadline-dev:armhf (7.0-3) ...
Setting up gfortran-7 (7.3.0-11) ...
Setting up libpcrecpp0v5:armhf (2:8.39-9) ...
Setting up libpcre32-3:armhf (2:8.39-9) ...
Setting up icu-devtools (57.1-9) ...
Setting up libpcre16-3:armhf (2:8.39-9) ...
Setting up libtcl8.6:armhf (8.6.8+dfsg-3) ...
Setting up libthai-data (0.1.27-2) ...
Setting up libjpeg62-turbo-dev:armhf (1:1.5.2-2+b1) ...
Setting up liblzma-dev:armhf (5.2.2-1.3) ...
Setting up libxdmcp6:armhf (1:1.1.2-3) ...
Setting up libkeyutils1:armhf (1.5.9-9.2) ...
Setting up bsdmainutils (11.1.2) ...
update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode
update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode
Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
Running in chroot, ignoring request.
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
Setting up xdg-utils (1.1.2-2) ...
Setting up libx11-data (2:1.6.4-3) ...
Setting up libxau6:armhf (1:1.0.8-1+b2) ...
Setting up autopoint (0.19.8.1-4) ...
Setting up zlib1g-dev:armhf (1:1.2.8.dfsg-5) ...
Setting up libfile-stripnondeterminism-perl (0.040-1) ...
Setting up libpaper1:armhf (1.1.24+nmu5) ...
Creating config file /etc/papersize with new version
Setting up gfortran (4:7.2.0-1d1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libpaper-utils (1.1.24+nmu5) ...
Setting up libpcre3-dev:armhf (2:8.39-9) ...
Setting up fontconfig-config (2.12.6-0.1) ...
Setting up gettext (0.19.8.1-4) ...
Setting up libblas-dev:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so to provide /usr/lib/arm-linux-gnueabihf/libblas.so (libblas.so-arm-linux-gnueabihf) in auto mode
Setting up liblapack3:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libharfbuzz0b:armhf (1.7.2-1) ...
Setting up autoconf (2.69-11) ...
Setting up libthai0:armhf (0.1.27-2) ...
Setting up libicu-dev (57.1-9) ...
Setting up file (1:5.32-2) ...
Setting up libkrb5support0:armhf (1.16-2) ...
Setting up intltool-debian (0.35.0+20060710.4) ...
Setting up libjpeg-dev (1:1.5.2-2) ...
Setting up automake (1:1.15.1-3) ...
update-alternatives: using /usr/bin/automake-1.15 to provide /usr/bin/automake (automake) in auto mode
Setting up libice6:armhf (2:1.0.9-2) ...
Setting up man-db (2.8.2-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libpng-dev:armhf (1.6.34-1) ...
Setting up libxcb1:armhf (1.13-1) ...
Setting up liblapack-dev:armhf (3.7.1-4) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so to provide /usr/lib/arm-linux-gnueabihf/liblapack.so (liblapack.so-arm-linux-gnueabihf) in auto mode
Setting up libtool (2.4.6-2) ...
Setting up libfontconfig1:armhf (2.12.6-0.1) ...
Setting up libsm6:armhf (2:1.2.2-1+b3) ...
Setting up libk5crypto3:armhf (1.16-2) ...
Setting up libxcb-render0:armhf (1.13-1) ...
Setting up po-debconf (1.0.20) ...
Setting up libx11-6:armhf (2:1.6.4-3) ...
Setting up libxmuu1:armhf (2:1.1.2-2) ...
Setting up libxcb-shm0:armhf (1.13-1) ...
Setting up libxt6:armhf (1:1.1.5-1) ...
Setting up libxrender1:armhf (1:0.9.10-1) ...
Setting up libkrb5-3:armhf (1.16-2) ...
Setting up libxft2:armhf (2.3.2-1+b2) ...
Setting up fontconfig (2.12.6-0.1) ...
Regenerating fonts cache... done.
Setting up libxext6:armhf (2:1.3.3-1+b2) ...
Setting up libxss1:armhf (1:1.2.2-1) ...
Setting up libgssapi-krb5-2:armhf (1.16-2) ...
Setting up xauth (1:1.0.10-1) ...
Setting up libpango-1.0-0:armhf (1.40.14-1) ...
Setting up libcairo2:armhf (1.15.10-1) ...
Setting up libcurl3:armhf (7.58.0-2) ...
Setting up libtk8.6:armhf (8.6.8-3) ...
Setting up libpangoft2-1.0-0:armhf (1.40.14-1) ...
Setting up libpangocairo-1.0-0:armhf (1.40.14-1) ...
Setting up r-base-core (3.4.4-1) ...
Creating config file /etc/R/Renviron with new version
Setting up r-base-dev (3.4.4-1) ...
Setting up r-bioc-biocgenerics (0.24.0-1) ...
Setting up r-bioc-biobase (2.38.0-1) ...
Setting up r-cran-bitops (1.0-6-3) ...
Setting up r-cran-futile.options (1.0.0-3) ...
Setting up r-cran-rcurl (1.95-4.8-4) ...
Setting up r-cran-lambda.r (1.2-1) ...
Setting up r-cran-matrixstats (0.53.1-1) ...
Setting up r-cran-snow (1:0.4.2-1.1) ...
Setting up r-bioc-s4vectors (0.16.0-1) ...
Setting up r-cran-xml (3.98-1.10-1) ...
Setting up r-cran-lattice (0.20-35-1+b1) ...
Setting up r-bioc-genomeinfodbdata (1.0.0-1) ...
Setting up r-cran-futile.logger (1.4.3-2) ...
Setting up r-bioc-iranges (2.12.0-2) ...
Setting up r-bioc-biocparallel (1.12.0-2) ...
Setting up r-cran-matrix (1.2-12-1) ...
Setting up r-bioc-delayedarray (0.4.1-1) ...
Setting up r-bioc-genomeinfodb (1.14.0-1) ...
Setting up r-bioc-xvector (0.18.0-1) ...
Setting up r-bioc-biostrings (2.46.0-1) ...
Setting up r-bioc-genomicranges (1.30.0-1) ...
Setting up r-bioc-summarizedexperiment (1.8.1-1) ...
Setting up r-bioc-rsamtools (1.30.0-1) ...
Setting up r-bioc-genomicalignments (1.14.1-1) ...
Setting up dh-autoreconf (16) ...
Setting up dh-strip-nondeterminism (0.040-1) ...
Setting up debhelper (11.1.5) ...
Setting up dh-r (20171201) ...
Setting up sbuild-build-depends-r-bioc-rtracklayer-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.27-2+rpi1) ...
W: No sandbox user '_apt' on the system, can not drop privileges
+------------------------------------------------------------------------------+
| Build environment |
+------------------------------------------------------------------------------+
Kernel: Linux 4.4.0-79-generic armhf (armv8l)
Toolchain package versions: binutils_2.30-7+rpi1 dpkg-dev_1.19.0.5 g++-7_7.3.0-11 gcc-7_7.3.0-11 libc6-dev_2.27-2+rpi1 libstdc++-7-dev_7.3.0-11 libstdc++6_8-20180218-1+rpi1 linux-libc-dev_4.15.4-1+rpi1
Package versions: adduser_3.117 apt_1.6~beta1 autoconf_2.69-11 automake_1:1.15.1-3 autopoint_0.19.8.1-4 autotools-dev_20180224.1 base-files_10.1+rpi1 base-passwd_3.5.44 bash_4.4.18-1.1 binutils_2.30-7+rpi1 binutils-arm-linux-gnueabihf_2.30-7+rpi1 binutils-common_2.30-7+rpi1 bsdmainutils_11.1.2 bsdutils_1:2.31.1-0.4 build-essential_12.4 bzip2_1.0.6-8.1 ca-certificates_20170717 cdbs_0.4.156 coreutils_8.28-1 cpio_2.12+dfsg-6 cpp_4:7.2.0-1d1 cpp-7_7.3.0-11 dash_0.5.8-2.10 dbus_1.12.6-2 dbus-user-session_1.12.6-2 dctrl-tools_2.24-2 debconf_1.5.66 debhelper_11.1.5 debianutils_4.8.4 dh-autoreconf_16 dh-r_20171201 dh-strip-nondeterminism_0.040-1 diffutils_1:3.6-1 dirmngr_2.2.5-1 dmsetup_2:1.02.145-4.1 dpkg_1.19.0.5 dpkg-dev_1.19.0.5 e2fslibs_1.44.0-1 e2fsprogs_1.44.0-1 e2fsprogs-l10n_1.44.0-1 fakeroot_1.22-2 fdisk_2.31.1-0.4 file_1:5.32-2 findutils_4.6.0+git+20170828-2 fontconfig_2.12.6-0.1 fontconfig-config_2.12.6-0.1 fonts-dejavu-core_2.37-1 g++_4:7.2.0-1d1 g++-7_7.3.0-11 gcc_4:7.2.0-1d1 gcc-4.6-base_4.6.4-5+rpi1 gcc-4.7-base_4.7.3-11+rpi1 gcc-4.8-base_4.8.5-4 gcc-4.9-base_4.9.4-2+rpi1 gcc-5-base_5.5.0-8 gcc-7_7.3.0-11 gcc-7-base_7.3.0-11 gcc-8-base_8-20180218-1+rpi1 gettext_0.19.8.1-4 gettext-base_0.19.8.1-4 gfortran_4:7.2.0-1d1 gfortran-7_7.3.0-11 gnupg_2.2.5-1 gnupg-agent_2.2.5-1 gnupg-l10n_2.2.5-1 gnupg-utils_2.2.5-1 gpg_2.2.5-1 gpg-agent_2.2.5-1 gpg-wks-client_2.2.5-1 gpg-wks-server_2.2.5-1 gpgconf_2.2.5-1 gpgsm_2.2.5-1 gpgv_2.2.5-1 grep_3.1-2 groff-base_1.22.3-10 gzip_1.6-5 hostname_3.20 icu-devtools_57.1-9 init-system-helpers_1.51 initramfs-tools_0.130 initramfs-tools-core_0.130 intltool-debian_0.35.0+20060710.4 klibc-utils_2.0.4-11+rpi1 kmod_25-1 libacl1_2.2.52-3 libapparmor1_2.12-3 libapt-pkg5.0_1.6~beta1 libarchive-zip-perl_1.60-1 libargon2-0_0~20161029-1.1 libasan4_7.3.0-11 libassuan0_2.5.1-2 libatomic1_8-20180218-1+rpi1 libattr1_1:2.4.47-2 libaudit-common_1:2.8.2-1 libaudit1_1:2.8.2-1 libbinutils_2.30-7+rpi1 libblas-dev_3.7.1-4 libblas3_3.7.1-4 libblkid1_2.31.1-0.4 libbsd0_0.8.7-1 libbz2-1.0_1.0.6-8.1 libbz2-dev_1.0.6-8.1 libc-bin_2.27-2+rpi1 libc-dev-bin_2.27-2+rpi1 libc6_2.27-2+rpi1 libc6-dev_2.27-2+rpi1 libcairo2_1.15.10-1 libcap-ng0_0.7.7-3.1+b1 libcap2_1:2.25-1.2 libcc1-0_8-20180218-1+rpi1 libcilkrts5_7.3.0-11 libcom-err2_1.44.0-1 libcroco3_0.6.12-2 libcryptsetup12_2:2.0.1-1 libcryptsetup4_2:1.7.5-1 libcurl3_7.58.0-2 libdatrie1_0.2.10-7 libdb5.3_5.3.28-13.1 libdbus-1-3_1.12.6-2 libdebconfclient0_0.241 libdevmapper1.02.1_2:1.02.145-4.1 libdpkg-perl_1.19.0.5 libdrm-common_2.4.90-1+rpi1 libdrm2_2.4.90-1+rpi1 libexpat1_2.2.5-3 libext2fs2_1.44.0-1 libfakeroot_1.22-2 libfdisk1_2.31.1-0.4 libffi6_3.2.1-8 libfile-stripnondeterminism-perl_0.040-1 libfontconfig1_2.12.6-0.1 libfreetype6_2.8.1-2 libgcc-7-dev_7.3.0-11 libgcc1_1:8-20180218-1+rpi1 libgcrypt20_1.8.1-4 libgdbm-compat4_1.14.1-4 libgdbm3_1.8.3-14 libgdbm5_1.14.1-4 libgfortran-7-dev_7.3.0-11 libgfortran4_7.3.0-11 libglib2.0-0_2.54.3-2 libgmp10_2:6.1.2+dfsg-3 libgnutls30_3.5.18-1 libgomp1_8-20180218-1+rpi1 libgpg-error0_1.27-6 libgraphite2-3_1.3.11-2 libgssapi-krb5-2_1.16-2 libharfbuzz0b_1.7.2-1 libhogweed4_3.4-1 libice6_2:1.0.9-2 libicu-dev_57.1-9 libicu57_57.1-9 libidn11_1.33-2.1 libidn2-0_2.0.4-1.1 libip4tc0_1.6.2-1 libisl15_0.18-1 libjbig0_2.1-3.1+b2 libjpeg-dev_1:1.5.2-2 libjpeg62-turbo_1:1.5.2-2+b1 libjpeg62-turbo-dev_1:1.5.2-2+b1 libjson-c3_0.12.1-1.3 libk5crypto3_1.16-2 libkeyutils1_1.5.9-9.2 libklibc_2.0.4-11+rpi1 libkmod2_25-1 libkrb5-3_1.16-2 libkrb5support0_1.16-2 libksba8_1.3.5-2 liblapack-dev_3.7.1-4 liblapack3_3.7.1-4 libldap-2.4-2_2.4.45+dfsg-1 libldap-common_2.4.45+dfsg-1 liblz4-1_0.0~r131-2 liblzma-dev_5.2.2-1.3 liblzma5_5.2.2-1.3 libmagic-mgc_1:5.32-2 libmagic1_1:5.32-2 libmount1_2.31.1-0.4 libmpc3_1.1.0-1 libmpfr6_4.0.1-1 libncurses5_6.1-1 libncurses5-dev_6.1-1 libncursesw5_6.1-1 libnettle6_3.4-1 libnghttp2-14_1.31.0-1 libnpth0_1.5-3 libnss-systemd_238-2 libp11-kit0_0.23.9-2 libpam-modules_1.1.8-3.7 libpam-modules-bin_1.1.8-3.7 libpam-runtime_1.1.8-3.7 libpam-systemd_238-2 libpam0g_1.1.8-3.7 libpango-1.0-0_1.40.14-1 libpangocairo-1.0-0_1.40.14-1 libpangoft2-1.0-0_1.40.14-1 libpaper-utils_1.1.24+nmu5 libpaper1_1.1.24+nmu5 libpcre16-3_2:8.39-9 libpcre3_2:8.39-9 libpcre3-dev_2:8.39-9 libpcre32-3_2:8.39-9 libpcrecpp0v5_2:8.39-9 libperl5.24_5.24.1-7 libperl5.26_5.26.1-5 libpipeline1_1.5.0-1 libpixman-1-0_0.34.0-2 libplymouth4_0.9.3-2 libpng-dev_1.6.34-1 libpng16-16_1.6.34-1 libprocps6_2:3.3.12-4 libpsl5_0.19.1-5 libreadline-dev_7.0-3 libreadline7_7.0-3 librtmp1_2.4+20151223.gitfa8646d.1-1 libsasl2-2_2.1.27~101-g0780600+dfsg-3 libsasl2-modules_2.1.27~101-g0780600+dfsg-3 libsasl2-modules-db_2.1.27~101-g0780600+dfsg-3 libseccomp2_2.3.1-2.1 libselinux1_2.7-2 libsemanage-common_2.7-2 libsemanage1_2.7-2 libsepol1_2.7-1 libsigsegv2_2.12-1 libsm6_2:1.2.2-1+b3 libsmartcols1_2.31.1-0.4 libsqlite3-0_3.22.0-1 libss2_1.44.0-1 libssh2-1_1.8.0-1 libssl-dev_1.1.0g-2 libssl1.0.2_1.0.2n-1 libssl1.1_1.1.0g-2 libstdc++-7-dev_7.3.0-11 libstdc++6_8-20180218-1+rpi1 libsystemd0_238-2 libtasn1-6_4.13-2 libtcl8.6_8.6.8+dfsg-3 libthai-data_0.1.27-2 libthai0_0.1.27-2 libtiff5_4.0.9-4 libtimedate-perl_2.3000-2 libtinfo-dev_6.1-1 libtinfo5_6.1-1 libtk8.6_8.6.8-3 libtool_2.4.6-2 libubsan0_7.3.0-11 libudev1_238-2 libunistring2_0.9.8-1 libustr-1.0-1_1.0.4-6 libuuid1_2.31.1-0.4 libx11-6_2:1.6.4-3 libx11-data_2:1.6.4-3 libxau6_1:1.0.8-1+b2 libxcb-render0_1.13-1 libxcb-shm0_1.13-1 libxcb1_1.13-1 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxft2_2.3.2-1+b2 libxml2_2.9.4+dfsg1-6.1 libxmuu1_2:1.1.2-2 libxrender1_1:0.9.10-1 libxss1_1:1.2.2-1 libxt6_1:1.1.5-1 linux-base_4.5 linux-libc-dev_4.15.4-1+rpi1 login_1:4.5-1 lsb-base_9.20170808+rpi1 m4_1.4.18-1 make_4.1-9.1 makedev_2.3.1-93 man-db_2.8.2-1 mawk_1.3.3-17 mount_2.31.1-0.4 multiarch-support_2.27-2+rpi1 nano_2.9.4-1 ncurses-base_6.1-1 ncurses-bin_6.1-1 openssl_1.1.0g-2 passwd_1:4.5-1 patch_2.7.6-1 perl_5.26.1-5 perl-base_5.26.1-5 perl-modules-5.24_5.24.1-7 perl-modules-5.26_5.26.1-5 pinentry-curses_1.1.0-1 pkg-config_0.29-4 plymouth_0.9.3-2 po-debconf_1.0.20 procps_2:3.3.12-4 r-base-core_3.4.4-1 r-base-dev_3.4.4-1 r-bioc-biobase_2.38.0-1 r-bioc-biocgenerics_0.24.0-1 r-bioc-biocparallel_1.12.0-2 r-bioc-biostrings_2.46.0-1 r-bioc-delayedarray_0.4.1-1 r-bioc-genomeinfodb_1.14.0-1 r-bioc-genomeinfodbdata_1.0.0-1 r-bioc-genomicalignments_1.14.1-1 r-bioc-genomicranges_1.30.0-1 r-bioc-iranges_2.12.0-2 r-bioc-rsamtools_1.30.0-1 r-bioc-s4vectors_0.16.0-1 r-bioc-summarizedexperiment_1.8.1-1 r-bioc-xvector_0.18.0-1 r-cran-bitops_1.0-6-3 r-cran-futile.logger_1.4.3-2 r-cran-futile.options_1.0.0-3 r-cran-lambda.r_1.2-1 r-cran-lattice_0.20-35-1+b1 r-cran-matrix_1.2-12-1 r-cran-matrixstats_0.53.1-1 r-cran-rcurl_1.95-4.8-4 r-cran-snow_1:0.4.2-1.1 r-cran-xml_3.98-1.10-1 raspbian-archive-keyring_20120528.2 readline-common_7.0-3 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-r-bioc-rtracklayer-dummy_0.invalid.0 sed_4.4-2 sensible-utils_0.0.12 systemd_238-2 systemd-sysv_238-2 sysvinit-utils_2.88dsf-59.10 tar_1.29b-2 tzdata_2018c-1 ucf_3.0038 udev_238-2 unzip_6.0-21 util-linux_2.31.1-0.4 x11-common_1:7.7+19 xauth_1:1.0.10-1 xdg-utils_1.1.2-2 xz-utils_5.2.2-1.3 zip_3.0-11 zlib1g_1:1.2.8.dfsg-5 zlib1g-dev_1:1.2.8.dfsg-5
+------------------------------------------------------------------------------+
| Build |
+------------------------------------------------------------------------------+
Unpack source
-------------
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Mon Mar 12 19:45:49 2018 UTC
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./r-bioc-rtracklayer_1.38.3-1.dsc
dpkg-source: info: extracting r-bioc-rtracklayer in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-rtracklayer_1.38.3.orig.tar.gz
dpkg-source: info: unpacking r-bioc-rtracklayer_1.38.3-1.debian.tar.xz
dpkg-source: info: applying use_debian_packaged_zlib.patch
dpkg-source: info: applying delete_configure.patch
Check disk space
----------------
Sufficient free space for build
User Environment
----------------
APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LC_ALL=POSIX
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=buster-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=buster-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=112
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=buster-staging-armhf-sbuild-890bb37a-ff6a-49c8-8ada-701fefb14904
SCHROOT_UID=107
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd
dpkg-buildpackage
-----------------
dpkg-buildpackage: info: source package r-bioc-rtracklayer
dpkg-buildpackage: info: source version 1.38.3-1
dpkg-buildpackage: info: source distribution unstable
dpkg-source --before-build r-bioc-rtracklayer-1.38.3
dpkg-buildpackage: info: host architecture armhf
fakeroot debian/rules clean
dh clean --buildsystem R
dh_testdir -O--buildsystem=R
dh_auto_clean -O--buildsystem=R
dh_autoreconf_clean -O--buildsystem=R
dh_clean -O--buildsystem=R
debian/rules build-arch
dh build-arch --buildsystem R
dh_testdir -a -O--buildsystem=R
dh_update_autotools_config -a -O--buildsystem=R
dh_autoreconf -a -O--buildsystem=R
dh_auto_configure -a -O--buildsystem=R
dh_auto_build -a -O--buildsystem=R
dh_auto_test -a -O--buildsystem=R
create-stamp debian/debhelper-build-stamp
fakeroot debian/rules binary-arch
dh binary-arch --buildsystem R
dh_testroot -a -O--buildsystem=R
dh_prep -a -O--buildsystem=R
dh_installdirs -a -O--buildsystem=R
dh_auto_install -a -O--buildsystem=R
I: R Package: rtracklayer Version: 1.38.3
I: Building using R version 3.4.4-1
I: R API version: r-api-3.4
I: Using built-time from d/changelog: Mon, 12 Mar 2018 20:41:34 +0100
mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library
R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 12 Mar 2018 20:41:34 +0100'"
* installing *source* package 'rtracklayer' ...
checking for pkg-config... /usr/bin/pkg-config
checking pkg-config is at least version 0.9.0... yes
checking for OPENSSL... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IRanges_stubs.c -o IRanges_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c XVector_stubs.c -o XVector_stubs.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c R_init_rtracklayer.c -o R_init_rtracklayer.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c readGFF.c -o readGFF.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c bigWig.c -o bigWig.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chain_io.c -o chain_io.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c twoBit.c -o twoBit.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c handlers.c -o handlers.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c utils.c -o utils.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bPlusTree.c -o ucsc/bPlusTree.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bbiRead.c -o ucsc/bbiRead.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bbiWrite.c -o ucsc/bbiWrite.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bwgCreate.c -o ucsc/bwgCreate.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bwgQuery.c -o ucsc/bwgQuery.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/cirTree.c -o ucsc/cirTree.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/common.c -o ucsc/common.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dnaseq.c -o ucsc/dnaseq.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dnautil.c -o ucsc/dnautil.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/errAbort.c -o ucsc/errAbort.o
ucsc/errAbort.c: In function 'getThreadVars':
ucsc/errAbort.c:331:5: warning: ignoring return value of 'write', declared with attribute warn_unused_result [-Wunused-result]
write(STDERR_FILENO, errMsg, strlen(errMsg));
^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/hash.c -o ucsc/hash.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/linefile.c -o ucsc/linefile.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/localmem.c -o ucsc/localmem.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/sqlNum.c -o ucsc/sqlNum.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/zlibFace.c -o ucsc/zlibFace.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dystring.c -o ucsc/dystring.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/hmmstats.c -o ucsc/hmmstats.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/obscure.c -o ucsc/obscure.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/pipeline.c -o ucsc/pipeline.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/rangeTree.c -o ucsc/rangeTree.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/rbTree.c -o ucsc/rbTree.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/memalloc.c -o ucsc/memalloc.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/dlist.c -o ucsc/dlist.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/udc.c -o ucsc/udc.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/net.c -o ucsc/net.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/bits.c -o ucsc/bits.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/twoBit.c -o ucsc/twoBit.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/_cheapcgi.c -o ucsc/_cheapcgi.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/internet.c -o ucsc/internet.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/https.c -o ucsc/https.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/base64.c -o ucsc/base64.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/verbose.c -o ucsc/verbose.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/os.c -o ucsc/os.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/wildcmp.c -o ucsc/wildcmp.o
gcc -std=gnu99 -I/usr/share/R/include -DNDEBUG -DUSE_SSL -D_FILE_OFFSET_BITS=64 -I"/usr/lib/R/site-library/S4Vectors/include" -I"/usr/lib/R/site-library/IRanges/include" -I"/usr/lib/R/site-library/XVector/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-1Z1lf8/r-base-3.4.4=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c ucsc/_portimpl.c -o ucsc/_portimpl.o
g++ -shared -L/usr/lib/R/lib -Wl,-z,relro -o rtracklayer.so S4Vectors_stubs.o IRanges_stubs.o XVector_stubs.o R_init_rtracklayer.o readGFF.o bigWig.o chain_io.o twoBit.o handlers.o utils.o ucsc/bPlusTree.o ucsc/bbiRead.o ucsc/bbiWrite.o ucsc/bwgCreate.o ucsc/bwgQuery.o ucsc/cirTree.o ucsc/common.o ucsc/dnaseq.o ucsc/dnautil.o ucsc/errAbort.o ucsc/hash.o ucsc/linefile.o ucsc/localmem.o ucsc/sqlNum.o ucsc/zlibFace.o ucsc/dystring.o ucsc/hmmstats.o ucsc/obscure.o ucsc/pipeline.o ucsc/rangeTree.o ucsc/rbTree.o ucsc/memalloc.o ucsc/dlist.o ucsc/udc.o ucsc/net.o ucsc/bits.o ucsc/twoBit.o ucsc/_cheapcgi.o ucsc/internet.o ucsc/https.o ucsc/base64.o ucsc/verbose.o ucsc/os.o ucsc/wildcmp.o ucsc/_portimpl.o -lz -pthread -lssl -lcrypto -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
Creating a generic function for 'offset' from package 'stats' in package 'rtracklayer'
Creating a generic function from function 'uri' in package 'rtracklayer'
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded
* DONE (rtracklayer)
rm -f /<<PKGBUILDDIR>>/debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/LICENSE
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 290.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 291.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 294.
W: Ignoring specified R dependency: R (>= 3.3)
I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.21.20)
I: Using r-bioc-bsgenome for Suggests:BSgenome (>= 1.33.4)
W: Cannot find a debian package for Suggests:humanStemCell
W: Cannot find a debian package for Suggests:microRNA (>= 1.1.1)
I: Using r-bioc-genefilter for Suggests:genefilter
I: Using r-bioc-limma for Suggests:limma
W: Cannot find a debian package for Suggests:org.Hs.eg.db
W: Cannot find a debian package for Suggests:hgu133plus2.db
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg19.knownGene
I: Using r-cran-runit for Suggests:RUnit
I: Using r-cran-xml for Imports:XML (>= 1.98-0)
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.13.8)
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.13.13)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.11.12)
I: Using r-bioc-xvector for Imports:XVector (>= 0.9.4)
I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb (>= 1.3.14)
I: Using r-bioc-biostrings for Imports:Biostrings (>= 2.43.7)
I: Using r-cran-rcurl for Imports:RCurl (>= 1.4-2)
I: Using r-bioc-rsamtools for Imports:Rsamtools (>= 1.17.8)
I: Using r-bioc-genomicalignments for Imports:GenomicAlignments (>= 1.5.4)
dh_install -a -O--buildsystem=R
dh_installdocs -a -O--buildsystem=R
dh_installchangelogs -a -O--buildsystem=R
dh_installexamples -a -O--buildsystem=R
dh_installman -a -O--buildsystem=R
dh_installcatalogs -a -O--buildsystem=R
dh_installcron -a -O--buildsystem=R
dh_installdebconf -a -O--buildsystem=R
dh_installemacsen -a -O--buildsystem=R
dh_installifupdown -a -O--buildsystem=R
dh_installinfo -a -O--buildsystem=R
dh_installinit -a -O--buildsystem=R
dh_installsystemd -a -O--buildsystem=R
dh_installmenu -a -O--buildsystem=R
dh_installmime -a -O--buildsystem=R
dh_installmodules -a -O--buildsystem=R
dh_installlogcheck -a -O--buildsystem=R
dh_installlogrotate -a -O--buildsystem=R
dh_installpam -a -O--buildsystem=R
dh_installppp -a -O--buildsystem=R
dh_installudev -a -O--buildsystem=R
dh_installgsettings -a -O--buildsystem=R
dh_bugfiles -a -O--buildsystem=R
dh_ucf -a -O--buildsystem=R
dh_lintian -a -O--buildsystem=R
dh_gconf -a -O--buildsystem=R
dh_icons -a -O--buildsystem=R
dh_perl -a -O--buildsystem=R
dh_usrlocal -a -O--buildsystem=R
dh_link -a -O--buildsystem=R
dh_installwm -a -O--buildsystem=R
dh_installxfonts -a -O--buildsystem=R
dh_strip_nondeterminism -a -O--buildsystem=R
dh_compress -a -O--buildsystem=R
dh_fixperms -a -O--buildsystem=R
dh_missing -a -O--buildsystem=R
dh_strip -a -O--buildsystem=R
dh_makeshlibs -a -O--buildsystem=R
dh_shlibdeps -a -O--buildsystem=R
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/r-bioc-rtracklayer/usr/lib/R/site-library/rtracklayer/libs/rtracklayer.so was not linked against libstdc++.so.6 (it uses none of the library's symbols)
dh_installdeb -a -O--buildsystem=R
dh_gencontrol -a -O--buildsystem=R
dh_md5sums -a -O--buildsystem=R
dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-rtracklayer-dbgsym' in '../r-bioc-rtracklayer-dbgsym_1.38.3-1_armhf.deb'.
dpkg-deb: building package 'r-bioc-rtracklayer' in '../r-bioc-rtracklayer_1.38.3-1_armhf.deb'.
dpkg-genbuildinfo --build=any
dpkg-genchanges --build=any -mRaspbian mythic lxc autobuilder 1 <root@raspbian.org> >../r-bioc-rtracklayer_1.38.3-1_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
dpkg-source --after-build r-bioc-rtracklayer-1.38.3
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2018-03-20T10:47:03Z
Finished
--------
I: Built successfully
+------------------------------------------------------------------------------+
| Post Build Chroot |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Changes |
+------------------------------------------------------------------------------+
r-bioc-rtracklayer_1.38.3-1_armhf.changes:
------------------------------------------
Format: 1.8
Date: Mon, 12 Mar 2018 20:41:34 +0100
Source: r-bioc-rtracklayer
Binary: r-bioc-rtracklayer
Architecture: armhf
Version: 1.38.3-1
Distribution: buster-staging
Urgency: medium
Maintainer: Raspbian mythic lxc autobuilder 1 <root@raspbian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
r-bioc-rtracklayer - GNU R interface to genome browsers and their annotation tracks
Changes:
r-bioc-rtracklayer (1.38.3-1) unstable; urgency=medium
.
* New upstream version
* Preparation of data package moved from SVN to Git
* Standards-Version: 4.1.3
* debhelper 11
Checksums-Sha1:
79ff7a05933a6a995a8c703c731252660c019d47 364468 r-bioc-rtracklayer-dbgsym_1.38.3-1_armhf.deb
9bab6166be14ff45ea4e67cf3f2ec09504619f38 8195 r-bioc-rtracklayer_1.38.3-1_armhf.buildinfo
4b872c9554e88ddfde53b6e55a4c0605e158306e 1849808 r-bioc-rtracklayer_1.38.3-1_armhf.deb
Checksums-Sha256:
3305f55e3b3ecd7d5c468d8ed038889c4a4eb8ec07756fb9ed196f9bba4207ba 364468 r-bioc-rtracklayer-dbgsym_1.38.3-1_armhf.deb
8b6cf3ef0df9301933afd7c485824f83e906060ddb4a8a0961658a5543a49ef9 8195 r-bioc-rtracklayer_1.38.3-1_armhf.buildinfo
9bba2f61d9df6218aec8a82eb8555279a5adb8a0d2ff51df20a15286858e4791 1849808 r-bioc-rtracklayer_1.38.3-1_armhf.deb
Files:
b40aa9200d5a60011738f514f2ca7424 364468 debug optional r-bioc-rtracklayer-dbgsym_1.38.3-1_armhf.deb
f13bdee2fc2d50db85d1092c278c351b 8195 gnu-r optional r-bioc-rtracklayer_1.38.3-1_armhf.buildinfo
283b707d66cfa2d01cf4546865794a06 1849808 gnu-r optional r-bioc-rtracklayer_1.38.3-1_armhf.deb
+------------------------------------------------------------------------------+
| Package contents |
+------------------------------------------------------------------------------+
r-bioc-rtracklayer-dbgsym_1.38.3-1_armhf.deb
--------------------------------------------
new Debian package, version 2.0.
size 364468 bytes: control archive=544 bytes.
416 bytes, 12 lines control
106 bytes, 1 lines md5sums
Package: r-bioc-rtracklayer-dbgsym
Source: r-bioc-rtracklayer
Version: 1.38.3-1
Auto-Built-Package: debug-symbols
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 430
Depends: r-bioc-rtracklayer (= 1.38.3-1)
Section: debug
Priority: optional
Description: debug symbols for r-bioc-rtracklayer
Build-Ids: 8432c5d9da22b8528e32a1d19152698121008972
drwxr-xr-x root/root 0 2018-03-12 19:41 ./
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/debug/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/debug/.build-id/84/
-rw-r--r-- root/root 429424 2018-03-12 19:41 ./usr/lib/debug/.build-id/84/32c5d9da22b8528e32a1d19152698121008972.debug
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/share/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/share/doc/
lrwxrwxrwx root/root 0 2018-03-12 19:41 ./usr/share/doc/r-bioc-rtracklayer-dbgsym -> r-bioc-rtracklayer
r-bioc-rtracklayer_1.38.3-1_armhf.deb
-------------------------------------
new Debian package, version 2.0.
size 1849808 bytes: control archive=2984 bytes.
1297 bytes, 17 lines control
6550 bytes, 74 lines md5sums
Package: r-bioc-rtracklayer
Version: 1.38.3-1
Architecture: armhf
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Installed-Size: 2741
Depends: r-base-core (>= 3.4.4-1), r-api-3.4, r-bioc-genomicranges (>= 1.21.20), r-cran-xml (>= 1.98-0), r-bioc-biocgenerics (>= 0.13.8), r-bioc-s4vectors (>= 0.13.13), r-bioc-iranges (>= 2.11.12), r-bioc-xvector (>= 0.9.4), r-bioc-genomeinfodb (>= 1.3.14), r-bioc-biostrings (>= 2.43.7), r-cran-rcurl (>= 1.4-2), r-bioc-rsamtools (>= 1.17.8), r-bioc-genomicalignments (>= 1.5.4), libc6 (>= 2.15), libgcc1 (>= 1:3.5), libssl1.1 (>= 1.1.0), libstdc++6 (>= 4.1.1), zlib1g (>= 1:1.1.4)
Suggests: r-bioc-bsgenome (>= 1.33.4), r-bioc-genefilter, r-bioc-limma, r-bioc-genomicfeatures, r-cran-runit
Section: gnu-r
Priority: optional
Homepage: https://bioconductor.org/packages/rtracklayer/
Description: GNU R interface to genome browsers and their annotation tracks
Extensible framework for interacting with multiple genome browsers
(currently UCSC built-in) and manipulating annotation tracks in various
formats (currently GFF, BED, bedGraph, BED15, WIG, BigWig and 2bit
built-in). The user may export/import tracks to/from the supported
browsers, as well as query and modify the browser state, such as the
current viewport.
drwxr-xr-x root/root 0 2018-03-12 19:41 ./
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/
-rw-r--r-- root/root 808 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/CITATION
-rw-r--r-- root/root 1697 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/DESCRIPTION
-rw-r--r-- root/root 2450 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/INDEX
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/Meta/
-rw-r--r-- root/root 3899 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/Meta/Rd.rds
-rw-r--r-- root/root 115 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/Meta/data.rds
-rw-r--r-- root/root 131 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/Meta/demo.rds
-rw-r--r-- root/root 112 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/Meta/features.rds
-rw-r--r-- root/root 4030 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/Meta/hsearch.rds
-rw-r--r-- root/root 3157 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/Meta/links.rds
-rw-r--r-- root/root 1826 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/Meta/nsInfo.rds
-rw-r--r-- root/root 1655 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/Meta/package.rds
-rw-r--r-- root/root 196 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/Meta/vignette.rds
-rw-r--r-- root/root 5100 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/NAMESPACE
-rw-r--r-- root/root 4702 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/NEWS
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/R/
-rw-r--r-- root/root 1056 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/R/rtracklayer
-rw-r--r-- root/root 791113 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/R/rtracklayer.rdb
-rw-r--r-- root/root 9969 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/R/rtracklayer.rdx
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/data/
-rw-r--r-- root/root 600528 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/data/cpneTrack.rda
-rw-r--r-- root/root 61392 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/data/targets.rda
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/demo/
-rw-r--r-- root/root 1335 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/demo/targets.R
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/doc/
-rw-r--r-- root/root 1365 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/doc/index.html
-rw-r--r-- root/root 12141 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/doc/rtracklayer.R
-rw-r--r-- root/root 27875 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/doc/rtracklayer.Rnw
-rw-r--r-- root/root 311293 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/doc/rtracklayer.pdf
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/extdata/
-rw-r--r-- root/root 217 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/extdata/demo.narrowPeak.gz
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/help/
-rw-r--r-- root/root 16573 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/help/AnIndex
-rw-r--r-- root/root 3179 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/help/aliases.rds
-rw-r--r-- root/root 588 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/help/paths.rds
-rw-r--r-- root/root 212391 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/help/rtracklayer.rdb
-rw-r--r-- root/root 1314 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/help/rtracklayer.rdx
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/html/
-rw-r--r-- root/root 43341 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/html/00Index.html
-rw-r--r-- root/root 1335 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/html/R.css
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/libs/
-rw-r--r-- root/root 300264 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/libs/rtracklayer.so
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/notes/
-rw-r--r-- root/root 9656 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/notes/design.org
-rw-r--r-- root/root 14634 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/notes/requirements.tex
-rw-r--r-- root/root 6804 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/notes/use-cases.tex
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/scripts/
-rw-r--r-- root/root 318 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/scripts/cpneTrack.R
-rw-r--r-- root/root 366 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/scripts/twobit.R
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/
-rw-r--r-- root/root 74484 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/bed.bw
-rw-r--r-- root/root 386 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/bed.wig
-rw-r--r-- root/root 2014 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/genes.gff3
-rw-r--r-- root/root 1344 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/gtf.gff
-rw-r--r-- root/root 1775 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/multi.wig
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/quickload/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/
-rw-r--r-- root/root 66 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/T_species_Oct_2011.2bit
-rw-r--r-- root/root 167 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/annots.xml
-rw-r--r-- root/root 285 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/bedData.bed.gz
-rw-r--r-- root/root 181 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/bedData.bed.gz.tbi
-rw-r--r-- root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/bedGraphData.bw
-rw-r--r-- root/root 9 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/quickload/T_species_Oct_2011/mod_chromInfo.txt
-rw-r--r-- root/root 38 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/quickload/contents.txt
-rw-r--r-- root/root 432 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/step.wig
-rw-r--r-- root/root 186 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/test.2bit
-rw-r--r-- root/root 321 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/test.R
-rw-r--r-- root/root 731 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/test.bed
-rw-r--r-- root/root 428 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/test.bed15
-rw-r--r-- root/root 455 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/test.bedGraph
-rw-r--r-- root/root 239 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/test.bedpe
-rw-r--r-- root/root 74326 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/test.bw
-rw-r--r-- root/root 294 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/test.gtf
-rw-r--r-- root/root 145 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/test.xmfa
-rw-r--r-- root/root 165 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/v1.gff
-rw-r--r-- root/root 1208 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/v2.gff
-rw-r--r-- root/root 948 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/v3.gff
-rw-r--r-- root/root 74501 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/variableStep.bw
-rw-r--r-- root/root 448 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/tests/variableStep.wig
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/unitTests/
-rw-r--r-- root/root 11622 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/unitTests/test_bed.R
-rw-r--r-- root/root 4692 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/unitTests/test_bedGraph.R
-rw-r--r-- root/root 2971 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/unitTests/test_bw.R
-rw-r--r-- root/root 8474 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/unitTests/test_gff.R
-rw-r--r-- root/root 1984 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/unitTests/test_twoBit.R
-rw-r--r-- root/root 5617 2018-03-12 19:41 ./usr/lib/R/site-library/rtracklayer/unitTests/test_wig.R
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/share/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/share/doc/
drwxr-xr-x root/root 0 2018-03-12 19:41 ./usr/share/doc/r-bioc-rtracklayer/
-rw-r--r-- root/root 846 2018-03-12 19:41 ./usr/share/doc/r-bioc-rtracklayer/README.test
-rw-r--r-- root/root 1066 2018-03-12 19:41 ./usr/share/doc/r-bioc-rtracklayer/changelog.Debian.gz
-rw-r--r-- root/root 7820 2018-03-12 19:41 ./usr/share/doc/r-bioc-rtracklayer/copyright
+------------------------------------------------------------------------------+
| Post Build |
+------------------------------------------------------------------------------+
+------------------------------------------------------------------------------+
| Cleanup |
+------------------------------------------------------------------------------+
Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
+------------------------------------------------------------------------------+
| Summary |
+------------------------------------------------------------------------------+
Build Architecture: armhf
Build-Space: 9580
Build-Time: 86
Distribution: buster-staging
Host Architecture: armhf
Install-Time: 598
Job: r-bioc-rtracklayer_1.38.3-1
Machine Architecture: armhf
Package: r-bioc-rtracklayer
Package-Time: 698
Source-Version: 1.38.3-1
Space: 9580
Status: successful
Version: 1.38.3-1
--------------------------------------------------------------------------------
Finished at 2018-03-20T10:47:03Z
Build needed 00:11:38, 9580k disk space