Raspbian Package Auto-Building

r-bioc-rsamtools → 2.14.0-1+b3 → armhf → 2023-10-06 04:43:20

sbuild (Debian sbuild) 0.85.0 (04 January 2023) on test2023

+==============================================================================+
| r-bioc-rsamtools 2.14.0-1+b3 (armhf)         Fri, 06 Oct 2023 04:40:18 +0000 |
+==============================================================================+

Package: r-bioc-rsamtools
Version: 2.14.0-1+b3
Source Version: 2.14.0-1
Distribution: trixie-staging
Machine Architecture: arm64
Host Architecture: armhf
Build Architecture: armhf
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/trixie-staging-armhf-sbuild-7afb5919-5957-4cfd-90ba-9b181188bf9f' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rsamtools-4UK5PW/resolver-Gmd23Q' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://172.17.4.1/private trixie-staging InRelease [11.3 kB]
Get:2 http://172.17.4.1/private trixie-staging/main Sources [14.1 MB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf Packages [14.8 MB]
Fetched 28.9 MB in 5s (5323 kB/s)
Reading package lists...
W: http://172.17.4.1/private/dists/trixie-staging/InRelease: Key is stored in legacy trusted.gpg keyring (/etc/apt/trusted.gpg), see the DEPRECATION section in apt-key(8) for details.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'r-bioc-rsamtools' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/r-pkg-team/r-bioc-rsamtools.git
Please use:
git clone https://salsa.debian.org/r-pkg-team/r-bioc-rsamtools.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2882 kB of source archives.
Get:1 http://172.17.4.1/private trixie-staging/main r-bioc-rsamtools 2.14.0-1 (dsc) [2319 B]
Get:2 http://172.17.4.1/private trixie-staging/main r-bioc-rsamtools 2.14.0-1 (tar) [2874 kB]
Get:3 http://172.17.4.1/private trixie-staging/main r-bioc-rsamtools 2.14.0-1 (diff) [6368 B]
Fetched 2882 kB in 0s (7209 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/r-bioc-rsamtools-4UK5PW/r-bioc-rsamtools-2.14.0' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/r-bioc-rsamtools-4UK5PW' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-xvector, r-bioc-zlibbioc, r-cran-bitops, r-bioc-biocparallel, r-bioc-rhtslib (>= 1.99.3), libcurl4-openssl-dev, build-essential, fakeroot
Filtered Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-xvector, r-bioc-zlibbioc, r-cran-bitops, r-bioc-biocparallel, r-bioc-rhtslib (>= 1.99.3), libcurl4-openssl-dev, build-essential, fakeroot
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [871 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [903 B]
Fetched 2383 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils bsdutils
  ca-certificates dctrl-tools debhelper dh-autoreconf dh-r
  dh-strip-nondeterminism dwz file fontconfig fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono gettext gettext-base gfortran
  gfortran-12 groff-base icu-devtools intltool-debian libalgorithm-c3-perl
  libarchive-zip-perl libb-hooks-endofscope-perl libb-hooks-op-check-perl
  libblas-dev libblas3 libblkid1 libboost1.81-dev libbrotli1 libbsd0
  libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
  libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
  libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl
  libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
  libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
  libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
  liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
  libmount1 libmro-compat-perl libnamespace-clean-perl libncurses-dev
  libncurses6 libnghttp2-14 libpackage-deprecationmanager-perl
  libpackage-stash-perl libpackage-stash-xs-perl libpango-1.0-0
  libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1
  libparams-classify-perl libparams-util-perl libpcre2-16-0 libpcre2-32-0
  libpcre2-dev libpcre2-posix3 libpipeline1 libpixman-1-0 libpkgconf3
  libpng-dev libpng16-16 libpsl5 libreadline-dev librtmp1 libsharpyuv0 libsm6
  libsmartcols1 libssh2-1 libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
  libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
  libuchardet0 liburi-perl libuuid1 libvariable-magic-perl libwebp7
  libwww-curl-perl libwww-curl-simple-perl libx11-6 libx11-data libxau6
  libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2
  libxmuu1 libxrender1 libxss1 libxt6 m4 man-db mount openssl pkg-config
  pkgconf pkgconf-bin po-debconf r-base-core r-base-dev r-bioc-biocgenerics
  r-bioc-biocparallel r-bioc-biostrings r-bioc-genomeinfodb
  r-bioc-genomeinfodbdata r-bioc-genomicranges r-bioc-iranges r-bioc-rhtslib
  r-bioc-s4vectors r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops
  r-cran-codetools r-cran-cpp11 r-cran-crayon r-cran-formatr
  r-cran-futile.logger r-cran-futile.options r-cran-lambda.r r-cran-rcurl
  r-cran-snow sensible-utils ucf unzip util-linux x11-common xauth xdg-utils
  zip zlib1g-dev
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc debtags dh-make
  postgresql-client-common gettext-doc libasprintf-dev libgettextpo-dev
  gfortran-doc gfortran-12-doc libcoarrays-dev groff liblapack-doc
  libboost1.81-doc libboost-atomic1.81-dev libboost-chrono1.81-dev
  libboost-container1.81-dev libboost-context1.81-dev
  libboost-contract1.81-dev libboost-coroutine1.81-dev
  libboost-date-time1.81-dev libboost-exception1.81-dev libboost-fiber1.81-dev
  libboost-filesystem1.81-dev libboost-graph1.81-dev
  libboost-graph-parallel1.81-dev libboost-iostreams1.81-dev
  libboost-locale1.81-dev libboost-log1.81-dev libboost-math1.81-dev
  libboost-mpi1.81-dev libboost-mpi-python1.81-dev libboost-numpy1.81-dev
  libboost-program-options1.81-dev libboost-python1.81-dev
  libboost-random1.81-dev libboost-regex1.81-dev
  libboost-serialization1.81-dev libboost-stacktrace1.81-dev
  libboost-system1.81-dev libboost-test1.81-dev libboost-thread1.81-dev
  libboost-timer1.81-dev libboost-type-erasure1.81-dev libboost-wave1.81-dev
  libboost1.81-tools-dev libmpfrc++-dev libntl-dev libboost-nowide1.81-dev
  libcurl4-doc libidn-dev libkrb5-dev libldap2-dev librtmp-dev libssh2-1-dev
  libssl-dev low-memory-monitor icu-doc liblzma-doc cryptsetup-bin ncurses-doc
  libscalar-number-perl readline-doc tcl8.6 tk8.6 libtool-doc gcj-jdk
  libbusiness-isbn-perl libregexp-ipv6-perl libwww-perl libcurl4-gnutls-dev
  m4-doc apparmor less www-browser nfs-common libmail-box-perl elpa-ess
  r-doc-info | r-doc-pdf r-mathlib r-base-html texlive-base texlive-latex-base
  texlive-plain-generic texlive-fonts-recommended texlive-fonts-extra
  texlive-extra-utils texlive-latex-recommended texlive-latex-extra texinfo
  r-bioc-biobase r-bioc-delayedarray r-bioc-rsamtools r-bioc-annotationdbi
  r-bioc-affy r-bioc-deseq2 r-bioc-annotate r-cran-runit r-cran-foreach
  r-cran-bbmisc r-cran-doparallel r-bioc-variantannotation
  r-bioc-genomicalignments r-bioc-shortread r-bioc-biocstyle r-cran-knitr
  r-cran-batchtools r-cran-data.table r-bioc-bsgenome r-bioc-genomicfeatures
  r-cran-matrix r-bioc-summarizedexperiment r-bioc-rtracklayer r-bioc-gviz
  r-bioc-annotationhub r-bioc-dexseq r-bioc-edger r-bioc-keggrest
  r-cran-digest r-cran-rmarkdown r-bioc-graph r-cran-rstudioapi r-cran-shiny
  r-cran-jsonlite r-cran-xml r-cran-rmpi r-cran-rlecuyer dosfstools kbd
  util-linux-extra util-linux-locales
Recommended packages:
  devscripts cme git-buildpackage curl | wget | lynx bzip2-doc
  libclass-c3-xs-perl libdevel-lexalias-perl libarchive-cpio-perl
  libglib2.0-data shared-mime-info xdg-user-dirs libio-compress-brotli-perl
  libdevel-partialdump-perl libgpm2 libpng-tools publicsuffix libltdl-dev
  uuid-runtime libmail-sendmail-perl r-recommended r-doc-html r-cran-bench
  r-cran-brio r-cran-callr r-cran-cli r-cran-covr r-cran-decor r-cran-desc
  r-cran-ggplot2 r-cran-glue r-cran-knitr r-cran-lobstr r-cran-mockery
  r-cran-progress r-cran-rmarkdown r-cran-scales r-cran-rcpp r-cran-testthat
  r-cran-tibble r-cran-vctrs r-cran-withr r-cran-testit r-cran-survival
  libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils
  x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev bsdextrautils ca-certificates
  dctrl-tools debhelper dh-autoreconf dh-r dh-strip-nondeterminism dwz file
  fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono gettext
  gettext-base gfortran gfortran-12 groff-base icu-devtools intltool-debian
  libalgorithm-c3-perl libarchive-zip-perl libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libblas-dev libblas3 libboost1.81-dev libbrotli1
  libbsd0 libbz2-dev libcairo2 libclass-c3-perl libclass-load-perl
  libclass-load-xs-perl libclone-perl libcurl3-gnutls libcurl4
  libcurl4-openssl-dev libdata-optlist-perl libdatrie1 libdebhelper-perl
  libdeflate0 libdevel-callchecker-perl libdevel-globaldestruction-perl
  libdevel-overloadinfo-perl libdevel-stacktrace-perl
  libdist-checkconflicts-perl libdynaloader-functions-perl libelf1
  libencode-locale-perl libeval-closure-perl libexpat1
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfreetype6 libfribidi0 libgfortran-12-dev libgfortran5 libglib2.0-0
  libgraphite2-3 libharfbuzz0b libhttp-date-perl libhttp-message-perl libice6
  libicu-dev libicu72 libio-html-perl libjbig0 libjpeg-dev libjpeg62-turbo
  libjpeg62-turbo-dev liblapack-dev liblapack3 liblerc4 liblwp-mediatypes-perl
  liblzma-dev libmagic-mgc libmagic1 libmodule-implementation-perl
  libmodule-runtime-conflicts-perl libmodule-runtime-perl libmoose-perl
  libmro-compat-perl libnamespace-clean-perl libncurses-dev libncurses6
  libnghttp2-14 libpackage-deprecationmanager-perl libpackage-stash-perl
  libpackage-stash-xs-perl libpango-1.0-0 libpangocairo-1.0-0
  libpangoft2-1.0-0 libpaper-utils libpaper1 libparams-classify-perl
  libparams-util-perl libpcre2-16-0 libpcre2-32-0 libpcre2-dev libpcre2-posix3
  libpipeline1 libpixman-1-0 libpkgconf3 libpng-dev libpng16-16 libpsl5
  libreadline-dev librtmp1 libsharpyuv0 libsm6 libssh2-1 libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-override-perl libswitch-perl libtcl8.6 libthai-data
  libthai0 libtiff6 libtimedate-perl libtk8.6 libtool libtry-tiny-perl
  libuchardet0 liburi-perl libvariable-magic-perl libwebp7 libwww-curl-perl
  libwww-curl-simple-perl libx11-6 libx11-data libxau6 libxcb-render0
  libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxft2 libxml2 libxmuu1 libxrender1
  libxss1 libxt6 m4 man-db openssl pkg-config pkgconf pkgconf-bin po-debconf
  r-base-core r-base-dev r-bioc-biocgenerics r-bioc-biocparallel
  r-bioc-biostrings r-bioc-genomeinfodb r-bioc-genomeinfodbdata
  r-bioc-genomicranges r-bioc-iranges r-bioc-rhtslib r-bioc-s4vectors
  r-bioc-xvector r-bioc-zlibbioc r-cran-bh r-cran-bitops r-cran-codetools
  r-cran-cpp11 r-cran-crayon r-cran-formatr r-cran-futile.logger
  r-cran-futile.options r-cran-lambda.r r-cran-rcurl r-cran-snow
  sbuild-build-depends-main-dummy sensible-utils ucf unzip x11-common xauth
  xdg-utils zip zlib1g-dev
The following packages will be upgraded:
  bsdutils libblkid1 libmount1 libsmartcols1 libuuid1 mount util-linux
7 upgraded, 192 newly installed, 0 to remove and 8 not upgraded.
Need to get 143 MB of archives.
After this operation, 486 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [988 B]
Get:2 http://172.17.4.1/private trixie-staging/main armhf bsdutils armhf 1:2.39.2-2 [85.9 kB]
Get:3 http://172.17.4.1/private trixie-staging/main armhf util-linux armhf 2.39.2-2 [1106 kB]
Get:4 http://172.17.4.1/private trixie-staging/main armhf mount armhf 2.39.2-2 [132 kB]
Get:5 http://172.17.4.1/private trixie-staging/main armhf libblkid1 armhf 2.39.2-2 [143 kB]
Get:6 http://172.17.4.1/private trixie-staging/main armhf libmount1 armhf 2.39.2-2 [166 kB]
Get:7 http://172.17.4.1/private trixie-staging/main armhf libsmartcols1 armhf 2.39.2-2 [101 kB]
Get:8 http://172.17.4.1/private trixie-staging/main armhf libuuid1 armhf 2.39.2-2 [27.8 kB]
Get:9 http://172.17.4.1/private trixie-staging/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB]
Get:10 http://172.17.4.1/private trixie-staging/main armhf groff-base armhf 1.23.0-2 [1033 kB]
Get:11 http://172.17.4.1/private trixie-staging/main armhf bsdextrautils armhf 2.39.2-2 [80.6 kB]
Get:12 http://172.17.4.1/private trixie-staging/main armhf libpipeline1 armhf 1.5.7-1 [33.4 kB]
Get:13 http://172.17.4.1/private trixie-staging/main armhf man-db armhf 2.11.2-3 [1342 kB]
Get:14 http://172.17.4.1/private trixie-staging/main armhf sensible-utils all 0.0.20 [19.3 kB]
Get:15 http://172.17.4.1/private trixie-staging/main armhf openssl armhf 3.0.11-1 [1367 kB]
Get:16 http://172.17.4.1/private trixie-staging/main armhf ca-certificates all 20230311 [153 kB]
Get:17 http://172.17.4.1/private trixie-staging/main armhf libmagic-mgc armhf 1:5.45-2 [314 kB]
Get:18 http://172.17.4.1/private trixie-staging/main armhf libmagic1 armhf 1:5.45-2 [96.1 kB]
Get:19 http://172.17.4.1/private trixie-staging/main armhf file armhf 1:5.45-2 [41.6 kB]
Get:20 http://172.17.4.1/private trixie-staging/main armhf gettext-base armhf 0.21-13 [156 kB]
Get:21 http://172.17.4.1/private trixie-staging/main armhf ucf all 3.0043+nmu1 [55.2 kB]
Get:22 http://172.17.4.1/private trixie-staging/main armhf m4 armhf 1.4.19-4 [256 kB]
Get:23 http://172.17.4.1/private trixie-staging/main armhf autoconf all 2.71-3 [332 kB]
Get:24 http://172.17.4.1/private trixie-staging/main armhf autotools-dev all 20220109.1 [51.6 kB]
Get:25 http://172.17.4.1/private trixie-staging/main armhf automake all 1:1.16.5-1.3 [823 kB]
Get:26 http://172.17.4.1/private trixie-staging/main armhf autopoint all 0.21-13 [496 kB]
Get:27 http://172.17.4.1/private trixie-staging/main armhf dctrl-tools armhf 2.24-3 [94.2 kB]
Get:28 http://172.17.4.1/private trixie-staging/main armhf libdebhelper-perl all 13.11.6 [81.9 kB]
Get:29 http://172.17.4.1/private trixie-staging/main armhf libtool all 2.4.7-7 [517 kB]
Get:30 http://172.17.4.1/private trixie-staging/main armhf dh-autoreconf all 20 [17.1 kB]
Get:31 http://172.17.4.1/private trixie-staging/main armhf libarchive-zip-perl all 1.68-1 [104 kB]
Get:32 http://172.17.4.1/private trixie-staging/main armhf libsub-override-perl all 0.09-4 [9304 B]
Get:33 http://172.17.4.1/private trixie-staging/main armhf libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB]
Get:34 http://172.17.4.1/private trixie-staging/main armhf dh-strip-nondeterminism all 1.13.1-1 [8620 B]
Get:35 http://172.17.4.1/private trixie-staging/main armhf libelf1 armhf 0.188-2.1+rpi1 [171 kB]
Get:36 http://172.17.4.1/private trixie-staging/main armhf dwz armhf 0.15-1 [92.4 kB]
Get:37 http://172.17.4.1/private trixie-staging/main armhf libicu72 armhf 72.1-3 [9009 kB]
Get:38 http://172.17.4.1/private trixie-staging/main armhf libxml2 armhf 2.9.14+dfsg-1.3 [571 kB]
Get:39 http://172.17.4.1/private trixie-staging/main armhf gettext armhf 0.21-13 [1201 kB]
Get:40 http://172.17.4.1/private trixie-staging/main armhf intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:41 http://172.17.4.1/private trixie-staging/main armhf po-debconf all 1.0.21+nmu1 [248 kB]
Get:42 http://172.17.4.1/private trixie-staging/main armhf debhelper all 13.11.6 [952 kB]
Get:43 http://172.17.4.1/private trixie-staging/main armhf zip armhf 3.0-13 [207 kB]
Get:44 http://172.17.4.1/private trixie-staging/main armhf unzip armhf 6.0-28 [147 kB]
Get:45 http://172.17.4.1/private trixie-staging/main armhf libpaper1 armhf 1.1.29 [11.9 kB]
Get:46 http://172.17.4.1/private trixie-staging/main armhf libpaper-utils armhf 1.1.29 [8416 B]
Get:47 http://172.17.4.1/private trixie-staging/main armhf xdg-utils all 1.1.3-4.1 [75.5 kB]
Get:48 http://172.17.4.1/private trixie-staging/main armhf libblas3 armhf 3.11.0-2 [100.0 kB]
Get:49 http://172.17.4.1/private trixie-staging/main armhf libexpat1 armhf 2.5.0-2 [76.8 kB]
Get:50 http://172.17.4.1/private trixie-staging/main armhf libbrotli1 armhf 1.0.9-2+b3 [258 kB]
Get:51 http://172.17.4.1/private trixie-staging/main armhf libpng16-16 armhf 1.6.40-1 [258 kB]
Get:52 http://172.17.4.1/private trixie-staging/main armhf libfreetype6 armhf 2.13.2+dfsg-1 [366 kB]
Get:53 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-mono all 2.37-8 [489 kB]
Get:54 http://172.17.4.1/private trixie-staging/main armhf fonts-dejavu-core all 2.37-8 [840 kB]
Get:55 http://172.17.4.1/private trixie-staging/main armhf fontconfig-config armhf 2.14.2-6 [316 kB]
Get:56 http://172.17.4.1/private trixie-staging/main armhf libfontconfig1 armhf 2.14.2-6 [367 kB]
Get:57 http://172.17.4.1/private trixie-staging/main armhf libpixman-1-0 armhf 0.42.2-1 [461 kB]
Get:58 http://172.17.4.1/private trixie-staging/main armhf libxau6 armhf 1:1.0.9-1 [19.1 kB]
Get:59 http://172.17.4.1/private trixie-staging/main armhf libbsd0 armhf 0.11.7-4 [111 kB]
Get:60 http://172.17.4.1/private trixie-staging/main armhf libxdmcp6 armhf 1:1.1.2-3 [25.0 kB]
Get:61 http://172.17.4.1/private trixie-staging/main armhf libxcb1 armhf 1.15-1 [139 kB]
Get:62 http://172.17.4.1/private trixie-staging/main armhf libx11-data all 2:1.8.6-1 [323 kB]
Get:63 http://172.17.4.1/private trixie-staging/main armhf libx11-6 armhf 2:1.8.6-1 [726 kB]
Get:64 http://172.17.4.1/private trixie-staging/main armhf libxcb-render0 armhf 1.15-1 [114 kB]
Get:65 http://172.17.4.1/private trixie-staging/main armhf libxcb-shm0 armhf 1.15-1 [106 kB]
Get:66 http://172.17.4.1/private trixie-staging/main armhf libxext6 armhf 2:1.3.4-1 [48.0 kB]
Get:67 http://172.17.4.1/private trixie-staging/main armhf libxrender1 armhf 1:0.9.10-1.1 [30.0 kB]
Get:68 http://172.17.4.1/private trixie-staging/main armhf libcairo2 armhf 1.18.0-1 [425 kB]
Get:69 http://172.17.4.1/private trixie-staging/main armhf libnghttp2-14 armhf 1.56.0-1 [60.5 kB]
Get:70 http://172.17.4.1/private trixie-staging/main armhf libpsl5 armhf 0.21.2-1+b1 [57.8 kB]
Get:71 http://172.17.4.1/private trixie-staging/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [54.2 kB]
Get:72 http://172.17.4.1/private trixie-staging/main armhf libssh2-1 armhf 1.11.0-2 [195 kB]
Get:73 http://172.17.4.1/private trixie-staging/main armhf libcurl4 armhf 8.2.1-2+rpi1 [343 kB]
Get:74 http://172.17.4.1/private trixie-staging/main armhf libglib2.0-0 armhf 2.78.0-2+rpi1 [1249 kB]
Get:75 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo armhf 1:2.1.5-2 [143 kB]
Get:76 http://172.17.4.1/private trixie-staging/main armhf libgfortran5 armhf 12.2.0-14+rpi1 [238 kB]
Get:77 http://172.17.4.1/private trixie-staging/main armhf liblapack3 armhf 3.11.0-2 [1624 kB]
Get:78 http://172.17.4.1/private trixie-staging/main armhf fontconfig armhf 2.14.2-6 [461 kB]
Get:79 http://172.17.4.1/private trixie-staging/main armhf libfribidi0 armhf 1.0.13-3 [69.9 kB]
Get:80 http://172.17.4.1/private trixie-staging/main armhf libgraphite2-3 armhf 1.3.14-1 [70.3 kB]
Get:81 http://172.17.4.1/private trixie-staging/main armhf libharfbuzz0b armhf 8.0.1-1 [2098 kB]
Get:82 http://172.17.4.1/private trixie-staging/main armhf libthai-data all 0.1.29-1 [176 kB]
Get:83 http://172.17.4.1/private trixie-staging/main armhf libdatrie1 armhf 0.2.13-2+b2 [39.9 kB]
Get:84 http://172.17.4.1/private trixie-staging/main armhf libthai0 armhf 0.1.29-1 [54.5 kB]
Get:85 http://172.17.4.1/private trixie-staging/main armhf libpango-1.0-0 armhf 1.51.0+ds-2 [187 kB]
Get:86 http://172.17.4.1/private trixie-staging/main armhf libpangoft2-1.0-0 armhf 1.51.0+ds-2 [40.4 kB]
Get:87 http://172.17.4.1/private trixie-staging/main armhf libpangocairo-1.0-0 armhf 1.51.0+ds-2 [30.0 kB]
Get:88 http://172.17.4.1/private trixie-staging/main armhf libtcl8.6 armhf 8.6.13+dfsg-2 [904 kB]
Get:89 http://172.17.4.1/private trixie-staging/main armhf libdeflate0 armhf 1.18-1 [38.3 kB]
Get:90 http://172.17.4.1/private trixie-staging/main armhf libjbig0 armhf 2.1-6.1 [27.0 kB]
Get:91 http://172.17.4.1/private trixie-staging/main armhf liblerc4 armhf 4.0.0+ds-3 [133 kB]
Get:92 http://172.17.4.1/private trixie-staging/main armhf libsharpyuv0 armhf 1.3.2-0.3 [106 kB]
Get:93 http://172.17.4.1/private trixie-staging/main armhf libwebp7 armhf 1.3.2-0.3 [261 kB]
Get:94 http://172.17.4.1/private trixie-staging/main armhf libtiff6 armhf 4.5.1+git230720-1 [298 kB]
Get:95 http://172.17.4.1/private trixie-staging/main armhf libxft2 armhf 2.3.6-1 [53.7 kB]
Get:96 http://172.17.4.1/private trixie-staging/main armhf x11-common all 1:7.7+23 [252 kB]
Get:97 http://172.17.4.1/private trixie-staging/main armhf libxss1 armhf 1:1.2.3-1 [17.3 kB]
Get:98 http://172.17.4.1/private trixie-staging/main armhf libtk8.6 armhf 8.6.13-2 [680 kB]
Get:99 http://172.17.4.1/private trixie-staging/main armhf libice6 armhf 2:1.0.10-1 [51.7 kB]
Get:100 http://172.17.4.1/private trixie-staging/main armhf libsm6 armhf 2:1.2.3-1 [32.9 kB]
Get:101 http://172.17.4.1/private trixie-staging/main armhf libxt6 armhf 1:1.2.1-1.1 [155 kB]
Get:102 http://172.17.4.1/private trixie-staging/main armhf r-base-core armhf 4.3.1-4 [26.3 MB]
Get:103 http://172.17.4.1/private trixie-staging/main armhf libgfortran-12-dev armhf 12.2.0-14+rpi1 [285 kB]
Get:104 http://172.17.4.1/private trixie-staging/main armhf gfortran-12 armhf 12.2.0-14+rpi1 [7509 kB]
Get:105 http://172.17.4.1/private trixie-staging/main armhf gfortran armhf 4:12.2.0-3+rpi1 [1424 B]
Get:106 http://172.17.4.1/private trixie-staging/main armhf libblas-dev armhf 3.11.0-2 [106 kB]
Get:107 http://172.17.4.1/private trixie-staging/main armhf liblapack-dev armhf 3.11.0-2 [3007 kB]
Get:108 http://172.17.4.1/private trixie-staging/main armhf libncurses6 armhf 6.4+20230625-2 [79.6 kB]
Get:109 http://172.17.4.1/private trixie-staging/main armhf libncurses-dev armhf 6.4+20230625-2 [290 kB]
Get:110 http://172.17.4.1/private trixie-staging/main armhf libreadline-dev armhf 8.2-1.3 [123 kB]
Get:111 http://172.17.4.1/private trixie-staging/main armhf libjpeg62-turbo-dev armhf 1:2.1.5-2 [258 kB]
Get:112 http://172.17.4.1/private trixie-staging/main armhf libjpeg-dev armhf 1:2.1.5-2 [71.8 kB]
Get:113 http://172.17.4.1/private trixie-staging/main armhf libpcre2-16-0 armhf 10.42-4 [211 kB]
Get:114 http://172.17.4.1/private trixie-staging/main armhf libpcre2-32-0 armhf 10.42-4 [201 kB]
Get:115 http://172.17.4.1/private trixie-staging/main armhf libpcre2-posix3 armhf 10.42-4 [55.1 kB]
Get:116 http://172.17.4.1/private trixie-staging/main armhf libpcre2-dev armhf 10.42-4 [648 kB]
Get:117 http://172.17.4.1/private trixie-staging/main armhf zlib1g-dev armhf 1:1.2.13.dfsg-3 [901 kB]
Get:118 http://172.17.4.1/private trixie-staging/main armhf libpng-dev armhf 1.6.40-1 [336 kB]
Get:119 http://172.17.4.1/private trixie-staging/main armhf libbz2-dev armhf 1.0.8-5+b2 [26.8 kB]
Get:120 http://172.17.4.1/private trixie-staging/main armhf liblzma-dev armhf 5.4.4-0.1 [269 kB]
Get:121 http://172.17.4.1/private trixie-staging/main armhf icu-devtools armhf 72.1-3 [175 kB]
Get:122 http://172.17.4.1/private trixie-staging/main armhf libicu-dev armhf 72.1-3 [9959 kB]
Get:123 http://172.17.4.1/private trixie-staging/main armhf libxmuu1 armhf 2:1.1.3-3 [23.3 kB]
Get:124 http://172.17.4.1/private trixie-staging/main armhf xauth armhf 1:1.1.2-1 [32.4 kB]
Get:125 http://172.17.4.1/private trixie-staging/main armhf libpkgconf3 armhf 1.8.1-1 [31.3 kB]
Get:126 http://172.17.4.1/private trixie-staging/main armhf pkgconf-bin armhf 1.8.1-1 [27.8 kB]
Get:127 http://172.17.4.1/private trixie-staging/main armhf pkgconf armhf 1.8.1-1 [25.9 kB]
Get:128 http://172.17.4.1/private trixie-staging/main armhf pkg-config armhf 1.8.1-1 [13.7 kB]
Get:129 http://172.17.4.1/private trixie-staging/main armhf r-base-dev all 4.3.1-4 [4512 B]
Get:130 http://172.17.4.1/private trixie-staging/main armhf libfile-which-perl all 1.27-2 [15.1 kB]
Get:131 http://172.17.4.1/private trixie-staging/main armhf libswitch-perl all 2.17-3 [20.3 kB]
Get:132 http://172.17.4.1/private trixie-staging/main armhf libclone-perl armhf 0.46-1 [13.2 kB]
Get:133 http://172.17.4.1/private trixie-staging/main armhf libencode-locale-perl all 1.05-3 [12.9 kB]
Get:134 http://172.17.4.1/private trixie-staging/main armhf libtimedate-perl all 2.3300-2 [39.3 kB]
Get:135 http://172.17.4.1/private trixie-staging/main armhf libhttp-date-perl all 6.05-2 [10.5 kB]
Get:136 http://172.17.4.1/private trixie-staging/main armhf libio-html-perl all 1.004-3 [16.2 kB]
Get:137 http://172.17.4.1/private trixie-staging/main armhf liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:138 http://172.17.4.1/private trixie-staging/main armhf liburi-perl all 5.21-1 [95.6 kB]
Get:139 http://172.17.4.1/private trixie-staging/main armhf libhttp-message-perl all 6.44-2 [81.8 kB]
Get:140 http://172.17.4.1/private trixie-staging/main armhf libparams-util-perl armhf 1.102-2+b1 [23.9 kB]
Get:141 http://172.17.4.1/private trixie-staging/main armhf libsub-install-perl all 0.929-1 [10.5 kB]
Get:142 http://172.17.4.1/private trixie-staging/main armhf libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:143 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-op-check-perl armhf 0.22-2+b1 [10.3 kB]
Get:144 http://172.17.4.1/private trixie-staging/main armhf libdynaloader-functions-perl all 0.003-3 [12.7 kB]
Get:145 http://172.17.4.1/private trixie-staging/main armhf libdevel-callchecker-perl armhf 0.008-2 [15.8 kB]
Get:146 http://172.17.4.1/private trixie-staging/main armhf libparams-classify-perl armhf 0.015-2+b1 [22.0 kB]
Get:147 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-perl all 0.016-2 [19.6 kB]
Get:148 http://172.17.4.1/private trixie-staging/main armhf libtry-tiny-perl all 0.31-2 [22.6 kB]
Get:149 http://172.17.4.1/private trixie-staging/main armhf libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:150 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:151 http://172.17.4.1/private trixie-staging/main armhf libclass-load-perl all 0.25-2 [15.3 kB]
Get:152 http://172.17.4.1/private trixie-staging/main armhf libclass-load-xs-perl armhf 0.10-2+b1 [13.8 kB]
Get:153 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:154 http://172.17.4.1/private trixie-staging/main armhf libdevel-globaldestruction-perl all 0.14-4 [7144 B]
Get:155 http://172.17.4.1/private trixie-staging/main armhf libalgorithm-c3-perl all 0.11-2 [10.8 kB]
Get:156 http://172.17.4.1/private trixie-staging/main armhf libclass-c3-perl all 0.35-2 [21.0 kB]
Get:157 http://172.17.4.1/private trixie-staging/main armhf libmro-compat-perl all 0.15-2 [11.8 kB]
Get:158 http://172.17.4.1/private trixie-staging/main armhf libdevel-overloadinfo-perl all 0.007-1 [7896 B]
Get:159 http://172.17.4.1/private trixie-staging/main armhf libdevel-stacktrace-perl all 2.0400-2 [26.8 kB]
Get:160 http://172.17.4.1/private trixie-staging/main armhf libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:161 http://172.17.4.1/private trixie-staging/main armhf libeval-closure-perl all 0.14-3 [11.2 kB]
Get:162 http://172.17.4.1/private trixie-staging/main armhf libdist-checkconflicts-perl all 0.11-2 [10.5 kB]
Get:163 http://172.17.4.1/private trixie-staging/main armhf libmodule-runtime-conflicts-perl all 0.003-2 [7356 B]
Get:164 http://172.17.4.1/private trixie-staging/main armhf libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB]
Get:165 http://172.17.4.1/private trixie-staging/main armhf libpackage-stash-xs-perl armhf 0.30-1+b1 [18.2 kB]
Get:166 http://172.17.4.1/private trixie-staging/main armhf libmoose-perl armhf 2.2206-1 [795 kB]
Get:167 http://172.17.4.1/private trixie-staging/main armhf libvariable-magic-perl armhf 0.63-1+b1 [41.6 kB]
Get:168 http://172.17.4.1/private trixie-staging/main armhf libb-hooks-endofscope-perl all 0.26-1 [19.6 kB]
Get:169 http://172.17.4.1/private trixie-staging/main armhf libsub-identify-perl armhf 0.14-3 [10.6 kB]
Get:170 http://172.17.4.1/private trixie-staging/main armhf libsub-name-perl armhf 0.27-1 [12.0 kB]
Get:171 http://172.17.4.1/private trixie-staging/main armhf libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:172 http://172.17.4.1/private trixie-staging/main armhf libcurl3-gnutls armhf 8.2.1-2+rpi1 [338 kB]
Get:173 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-perl armhf 4.17-10 [55.8 kB]
Get:174 http://172.17.4.1/private trixie-staging/main armhf libwww-curl-simple-perl all 0.100191-3 [12.6 kB]
Get:175 http://172.17.4.1/private trixie-staging/main armhf dh-r all 20230912 [40.8 kB]
Get:176 http://172.17.4.1/private trixie-staging/main armhf libboost1.81-dev armhf 1.81.0-6 [10.4 MB]
Get:177 http://172.17.4.1/private trixie-staging/main armhf libcurl4-openssl-dev armhf 8.2.1-2+rpi1 [425 kB]
Get:178 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocgenerics all 0.46.0-1 [594 kB]
Get:179 http://172.17.4.1/private trixie-staging/main armhf r-cran-formatr all 1.14-1 [152 kB]
Get:180 http://172.17.4.1/private trixie-staging/main armhf r-cran-lambda.r all 1.2.4-2 [118 kB]
Get:181 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.options all 1.0.1-3 [20.0 kB]
Get:182 http://172.17.4.1/private trixie-staging/main armhf r-cran-futile.logger all 1.4.3-4 [98.4 kB]
Get:183 http://172.17.4.1/private trixie-staging/main armhf r-cran-snow all 1:0.4.4-2 [98.9 kB]
Get:184 http://172.17.4.1/private trixie-staging/main armhf r-cran-codetools all 0.2-19-1 [90.9 kB]
Get:185 http://172.17.4.1/private trixie-staging/main armhf r-cran-bh all 1.81.0-1 [5776 B]
Get:186 http://172.17.4.1/private trixie-staging/main armhf r-cran-cpp11 all 0.4.6-1 [219 kB]
Get:187 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biocparallel armhf 1.34.2-1 [1337 kB]
Get:188 http://172.17.4.1/private trixie-staging/main armhf r-bioc-s4vectors armhf 0.38.2+dfsg-1 [2047 kB]
Get:189 http://172.17.4.1/private trixie-staging/main armhf r-bioc-iranges armhf 2.34.1-1 [2247 kB]
Get:190 http://172.17.4.1/private trixie-staging/main armhf r-bioc-zlibbioc all 1.46.0+dfsg-1 [9336 B]
Get:191 http://172.17.4.1/private trixie-staging/main armhf r-bioc-xvector armhf 0.40.0-1 [617 kB]
Get:192 http://172.17.4.1/private trixie-staging/main armhf r-cran-bitops armhf 1.0-7-1 [30.1 kB]
Get:193 http://172.17.4.1/private trixie-staging/main armhf r-cran-rcurl armhf 1.98-1.12+dfsg-1 [787 kB]
Get:194 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodbdata all 1.2.10-1 [12.0 MB]
Get:195 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomeinfodb all 1.36.3+dfsg-1 [3840 kB]
Get:196 http://172.17.4.1/private trixie-staging/main armhf r-cran-crayon all 1.5.2-1 [165 kB]
Get:197 http://172.17.4.1/private trixie-staging/main armhf r-bioc-biostrings armhf 2.68.1-1 [13.8 MB]
Get:198 http://172.17.4.1/private trixie-staging/main armhf r-bioc-genomicranges armhf 1.52.0+dfsg-1 [1831 kB]
Get:199 http://172.17.4.1/private trixie-staging/main armhf r-bioc-rhtslib armhf 2.2.0+dfsg-1 [1188 kB]
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No schema files found: doing nothing.
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invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of restart.
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update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
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Updating certificates in /etc/ssl/certs...
140 added, 0 removed; done.
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Creating config file /etc/papersize with new version
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Regenerating fonts cache... done.
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Creating config file /etc/R/Renviron with new version
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Setting up r-base-dev (4.3.1-4) ...
Setting up libmoose-perl:armhf (2.2206-1) ...
Setting up r-cran-lambda.r (1.2.4-2) ...
Setting up r-cran-snow (1:0.4.4-2) ...
Setting up r-cran-bitops (1.0-7-1) ...
Setting up r-bioc-zlibbioc (1.46.0+dfsg-1) ...
Setting up r-cran-cpp11 (0.4.6-1) ...
Setting up r-bioc-s4vectors (0.38.2+dfsg-1) ...
Setting up r-cran-futile.logger (1.4.3-4) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up r-bioc-iranges (2.34.1-1) ...
Setting up r-cran-rcurl (1.98-1.12+dfsg-1) ...
Setting up r-bioc-biocparallel (1.34.2-1) ...
Setting up libwww-curl-simple-perl (0.100191-3) ...
Setting up r-bioc-rhtslib (2.2.0+dfsg-1) ...
Setting up r-bioc-genomeinfodb (1.36.3+dfsg-1) ...
Setting up r-bioc-xvector (0.40.0-1) ...
Setting up dh-r (20230912) ...
Setting up r-bioc-genomicranges (1.52.0+dfsg-1) ...
Setting up r-bioc-biostrings (2.68.1-1) ...
Setting up sbuild-build-depends-main-dummy (0.invalid.0) ...
Processing triggers for libc-bin (2.36-9+rpi1+deb12u1) ...
Processing triggers for ca-certificates (20230311) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.47-v8+ #1 SMP PREEMPT Fri Sep  1 07:05:33 BST 2023 arm64 (aarch64)
Toolchain package versions: binutils_2.40-2+rpi2 dpkg-dev_1.21.22+rpi1 g++-12_12.2.0-14+rpi1 gcc-12_12.2.0-14+rpi1 libc6-dev_2.36-9+rpi1+deb12u1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 linux-libc-dev_6.1.38-1+rpi1
Package versions: adduser_3.137 apt_2.7.3 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-13 autotools-dev_20220109.1 base-files_13+rpi1 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2+rpi2 binutils-arm-linux-gnueabihf_2.40-2+rpi2 binutils-common_2.40-2+rpi2 bsdextrautils_2.39.2-2 bsdutils_1:2.39.2-2 build-essential_12.9 bzip2_1.0.8-5+b2 ca-certificates_20230311 coreutils_9.1-1 cpp_4:12.2.0-3+rpi1 cpp-12_12.2.0-14+rpi1 dash_0.5.12-6 dctrl-tools_2.24-3 debconf_1.5.82 debhelper_13.11.6 debianutils_5.13 dh-autoreconf_20 dh-r_20230912 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dirmngr_2.2.40-1.1 dpkg_1.21.22+rpi1 dpkg-dev_1.21.22+rpi1 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.32.1-1 file_1:5.45-2 findutils_4.9.0-5 fontconfig_2.14.2-6 fontconfig-config_2.14.2-6 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:12.2.0-3+rpi1 g++-12_12.2.0-14+rpi1 gcc_4:12.2.0-3+rpi1 gcc-10-base_10.4.0-7+rpi1 gcc-12_12.2.0-14+rpi1 gcc-12-base_12.2.0-14+rpi1 gcc-7-base_7.5.0-6+rpi1+b2 gcc-8-base_8.4.0-7+rpi1 gcc-9-base_9.4.0-2+rpi1 gettext_0.21-13 gettext-base_0.21-13 gfortran_4:12.2.0-3+rpi1 gfortran-12_12.2.0-14+rpi1 gnupg_2.2.40-1.1 gnupg-l10n_2.2.40-1.1 gnupg-utils_2.2.40-1.1 gpg_2.2.40-1.1 gpg-agent_2.2.40-1.1 gpg-wks-client_2.2.40-1.1 gpg-wks-server_2.2.40-1.1 gpgconf_2.2.40-1.1 gpgsm_2.2.40-1.1 gpgv_2.2.40-1.1 grep_3.11-3 groff-base_1.23.0-2 gzip_1.12-1 hostname_3.23+nmu1 icu-devtools_72.1-3 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libalgorithm-c3-perl_0.11-2 libapt-pkg6.0_2.7.3 libarchive-zip-perl_1.68-1 libasan8_12.2.0-14+rpi1 libassuan0_2.5.6-1 libatomic1_12.2.0-14+rpi1 libattr1_1:2.5.1-4 libaudit-common_1:3.1.1-1 libaudit1_1:3.1.1-1 libb-hooks-endofscope-perl_0.26-1 libb-hooks-op-check-perl_0.22-2+b1 libbinutils_2.40-2+rpi2 libblas-dev_3.11.0-2 libblas3_3.11.0-2 libblkid1_2.39.2-2 libboost1.81-dev_1.81.0-6 libbrotli1_1.0.9-2+b3 libbsd0_0.11.7-4 libbz2-1.0_1.0.8-5+b2 libbz2-dev_1.0.8-5+b2 libc-bin_2.36-9+rpi1+deb12u1 libc-dev-bin_2.36-9+rpi1+deb12u1 libc6_2.36-9+rpi1+deb12u1 libc6-dev_2.36-9+rpi1+deb12u1 libcairo2_1.18.0-1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.66-4 libcc1-0_12.2.0-14+rpi1 libclass-c3-perl_0.35-2 libclass-load-perl_0.25-2 libclass-load-xs-perl_0.10-2+b1 libclone-perl_0.46-1 libcom-err2_1.47.0-2 libcrypt-dev_1:4.4.36-2 libcrypt1_1:4.4.36-2 libctf-nobfd0_2.40-2+rpi2 libctf0_2.40-2+rpi2 libcurl3-gnutls_8.2.1-2+rpi1 libcurl4_8.2.1-2+rpi1 libcurl4-openssl-dev_8.2.1-2+rpi1 libdata-optlist-perl_0.114-1 libdatrie1_0.2.13-2+b2 libdb5.3_5.3.28+dfsg2-2 libdebconfclient0_0.270 libdebhelper-perl_13.11.6 libdeflate0_1.18-1 libdevel-callchecker-perl_0.008-2 libdevel-globaldestruction-perl_0.14-4 libdevel-overloadinfo-perl_0.007-1 libdevel-stacktrace-perl_2.0400-2 libdist-checkconflicts-perl_0.11-2 libdpkg-perl_1.21.22+rpi1 libdynaloader-functions-perl_0.003-3 libelf1_0.188-2.1+rpi1 libencode-locale-perl_1.05-3 libeval-closure-perl_0.14-3 libexpat1_2.5.0-2 libext2fs2_1.47.0-2 libfakeroot_1.32.1-1 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libparams-util-perl_1.102-2+b1 libpcre2-16-0_10.42-4 libpcre2-32-0_10.42-4 libpcre2-8-0_10.42-4 libpcre2-dev_10.42-4 libpcre2-posix3_10.42-4 libperl5.36_5.36.0-9 libpipeline1_1.5.7-1 libpixman-1-0_0.42.2-1 libpkgconf3_1.8.1-1 libpng-dev_1.6.40-1 libpng16-16_1.6.40-1 libpsl5_0.21.2-1+b1 libreadline-dev_8.2-1.3 libreadline8_8.2-1.3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg1-3 libsasl2-modules-db_2.1.28+dfsg1-3 libseccomp2_2.5.4-1+rpi1+b1 libselinux1_3.5-1 libsemanage-common_3.5-1 libsemanage2_3.5-1 libsepol2_3.5-1 libsharpyuv0_1.3.2-0.3 libsm6_2:1.2.3-1 libsmartcols1_2.39.2-2 libsqlite3-0_3.43.1-1 libss2_1.47.0-2 libssh2-1_1.11.0-2 libssl3_3.0.11-1 libstdc++-12-dev_12.2.0-14+rpi1 libstdc++6_12.2.0-14+rpi1 libsub-exporter-perl_0.990-1 libsub-exporter-progressive-perl_0.001013-3 libsub-identify-perl_0.14-3 libsub-install-perl_0.929-1 libsub-name-perl_0.27-1 libsub-override-perl_0.09-4 libswitch-perl_2.17-3 libsystemd0_252.12-1~deb12u1+rpi1 libtasn1-6_4.19.0-3 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make_4.3-4.1 man-db_2.11.2-3 mawk_1.3.4.20230808-1 mount_2.39.2-2 ncurses-base_6.4+20230625-2 ncurses-bin_6.4+20230625-2 openssl_3.0.11-1 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-9 perl-base_5.36.0-9 perl-modules-5.36_5.36.0-9 pinentry-curses_1.2.1-1 pkg-config_1.8.1-1 pkgconf_1.8.1-1 pkgconf-bin_1.8.1-1 po-debconf_1.0.21+nmu1 r-base-core_4.3.1-4 r-base-dev_4.3.1-4 r-bioc-biocgenerics_0.46.0-1 r-bioc-biocparallel_1.34.2-1 r-bioc-biostrings_2.68.1-1 r-bioc-genomeinfodb_1.36.3+dfsg-1 r-bioc-genomeinfodbdata_1.2.10-1 r-bioc-genomicranges_1.52.0+dfsg-1 r-bioc-iranges_2.34.1-1 r-bioc-rhtslib_2.2.0+dfsg-1 r-bioc-s4vectors_0.38.2+dfsg-1 r-bioc-xvector_0.40.0-1 r-bioc-zlibbioc_1.46.0+dfsg-1 r-cran-bh_1.81.0-1 r-cran-bitops_1.0-7-1 r-cran-codetools_0.2-19-1 r-cran-cpp11_0.4.6-1 r-cran-crayon_1.5.2-1 r-cran-formatr_1.14-1 r-cran-futile.logger_1.4.3-4 r-cran-futile.options_1.0.1-3 r-cran-lambda.r_1.2.4-2 r-cran-rcurl_1.98-1.12+dfsg-1 r-cran-snow_1:0.4.4-2 raspbian-archive-keyring_20120528.2 readline-common_8.2-1.3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.20 sysvinit-utils_3.08-1 tar_1.34+dfsg-1.2 tzdata_2023c-10 ucf_3.0043+nmu1 unzip_6.0-28 usr-is-merged_37 util-linux_2.39.2-2 x11-common_1:7.7+23 xauth_1:1.1.2-1 xdg-utils_1.1.3-4.1 xz-utils_5.4.4-0.1 zip_3.0-13 zlib1g_1:1.2.13.dfsg-3 zlib1g-dev_1:1.2.13.dfsg-3

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: r-bioc-rsamtools
Binary: r-bioc-rsamtools
Architecture: any
Version: 2.14.0-1
Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
Uploaders: Andreas Tille <tille@debian.org>
Homepage: https://bioconductor.org/packages/Rsamtools/
Standards-Version: 4.6.1
Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-rsamtools
Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-rsamtools.git
Testsuite: autopkgtest-pkg-r
Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-genomeinfodb, r-bioc-genomicranges, r-bioc-biostrings, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-iranges, r-bioc-xvector, r-bioc-zlibbioc, r-cran-bitops, r-bioc-biocparallel, r-bioc-rhtslib (>= 1.99.3), libcurl4-openssl-dev
Package-List:
 r-bioc-rsamtools deb gnu-r optional arch=any
Checksums-Sha1:
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 7b9a211e06b7747e62cbcd1ba40f48a4dc31a3d4 6368 r-bioc-rsamtools_2.14.0-1.debian.tar.xz
Checksums-Sha256:
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Files:
 36dc928eb8aebb85ad4f2d0098c1daf6 2873806 r-bioc-rsamtools_2.14.0.orig.tar.gz
 1f263f1444d450f9ff8b0f0ee1356e5b 6368 r-bioc-rsamtools_2.14.0-1.debian.tar.xz

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gpgv: Signature made Mon Nov 21 10:23:34 2022 UTC
gpgv:                using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv:                issuer "tillea@rki.de"
gpgv: Can't check signature: No public key
dpkg-source: warning: cannot verify inline signature for ./r-bioc-rsamtools_2.14.0-1.dsc: no acceptable signature found
dpkg-source: info: extracting r-bioc-rsamtools in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking r-bioc-rsamtools_2.14.0.orig.tar.gz
dpkg-source: info: unpacking r-bioc-rsamtools_2.14.0-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying skip_test_requiring_network.patch

Check disk space
----------------

Sufficient free space for build

Hack binNMU version
-------------------

Created changelog entry for binNMU version 2.14.0-1+b3

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
DEB_BUILD_OPTIONS=parallel=4
HOME=/sbuild-nonexistent
LANG=en_GB.UTF-8
LC_ALL=C.UTF-8
LOGNAME=buildd
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=trixie-staging-armhf-sbuild
SCHROOT_CHROOT_NAME=trixie-staging-armhf-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=124
SCHROOT_GROUP=buildd
SCHROOT_SESSION_ID=trixie-staging-armhf-sbuild-7afb5919-5957-4cfd-90ba-9b181188bf9f
SCHROOT_UID=114
SCHROOT_USER=buildd
SHELL=/bin/sh
USER=buildd

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -us -uc -mRaspbian pi5 test autobuilder <root@raspbian.org> -B -rfakeroot
dpkg-buildpackage: info: source package r-bioc-rsamtools
dpkg-buildpackage: info: source version 2.14.0-1+b3
dpkg-buildpackage: info: source distribution trixie-staging
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean --buildsystem R
   dh_auto_clean -O--buildsystem=R
   dh_autoreconf_clean -O--buildsystem=R
   dh_clean -O--buildsystem=R
 debian/rules binary-arch
dh binary-arch --buildsystem R
   dh_update_autotools_config -a -O--buildsystem=R
   dh_autoreconf -a -O--buildsystem=R
   dh_auto_configure -a -O--buildsystem=R
   dh_auto_build -a -O--buildsystem=R
   dh_auto_test -a -O--buildsystem=R
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a -O--buildsystem=R
   dh_prep -a -O--buildsystem=R
   dh_auto_install --destdir=debian/r-bioc-rsamtools/ -a -O--buildsystem=R
I: R Package: Rsamtools Version: 2.14.0
I: Building using R version 4.3.1-4
I: R API version: r-api-4.0
I: Using built-time from d/changelog: Fri, 06 Oct 2023 04:42:21 +0000
	mkdir -p /<<PKGBUILDDIR>>/debian/r-bioc-rsamtools/usr/lib/R/site-library
	R CMD INSTALL -l /<<PKGBUILDDIR>>/debian/r-bioc-rsamtools/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 06 Oct 2023 04:42:21 +0000'"
* installing *source* package ‘Rsamtools’ ...
** using staged installation
** libs
using C compiler: ‘gcc (Raspbian 12.2.0-14+rpi1) 12.2.0’
using C++ compiler: ‘g++ (Raspbian 12.2.0-14+rpi1) 12.2.0’
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c Biostrings_stubs.c -o Biostrings_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c COMPAT_bcf_hdr_read.c -o COMPAT_bcf_hdr_read.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c IRanges_stubs.c -o IRanges_stubs.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c PileupBuffer.cpp -o PileupBuffer.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c PosCacheColl.cpp -o PosCacheColl.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c R_init_Rsamtools.c -o R_init_Rsamtools.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c ResultManager.cpp -o ResultManager.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c S4Vectors_stubs.c -o S4Vectors_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c XVector_stubs.c -o XVector_stubs.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c as_bam.c -o as_bam.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bam_data.c -o bam_data.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bam_mate_iter.cpp -o bam_mate_iter.o
In file included from Template.h:9,
                 from BamIterator.h:10,
                 from BamRangeIterator.h:7,
                 from bam_mate_iter.cpp:2:
BamRangeIterator.h: In member function ‘virtual void BamRangeIterator::finalize_inprogress(bamFile)’:
/usr/lib/R/site-library/Rhtslib/include/samtools-1.7-compat.h:14:41: warning: ignoring return value of ‘int64_t bgzf_seek(BGZF*, int64_t, int)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir)
      |                                ~~~~~~~~~^~~~~~~~~~~~~~
BamRangeIterator.h:138:16: note: in expansion of macro ‘bam_seek’
  138 |         (void) bam_seek(bfile, pos, SEEK_SET);
      |                ^~~~~~~~
BamIterator.h: In constructor ‘BamIterator::BamIterator(bamFile, const bam_index_t*)’:
/usr/lib/R/site-library/Rhtslib/include/samtools-1.7-compat.h:14:41: warning: ignoring return value of ‘int64_t bgzf_seek(BGZF*, int64_t, int)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir)
      |                                ~~~~~~~~~^~~~~~~~~~~~~~
BamIterator.h:87:16: note: in expansion of macro ‘bam_seek’
   87 |         (void) bam_seek(bfile, 0, 0);
      |                ^~~~~~~~
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bam_plbuf.c -o bam_plbuf.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bam_sort.c -o bam_sort.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bambuffer.c -o bambuffer.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bamfile.c -o bamfile.o
bamfile.c: In function ‘bamfile_isincomplete’:
bamfile.c:168:20: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  168 |             (void) bgzf_seek(bfile->file->x.bam, offset, SEEK_SET);
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bcffile.c -o bcffile.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c bedidx.c -o bedidx.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c encode.c -o encode.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c fafile.c -o fafile.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c idxstats.c -o idxstats.o
In file included from bamfile.h:5,
                 from idxstats.c:1:
idxstats.c: In function ‘idxstats_bamfile’:
/usr/lib/R/site-library/Rhtslib/include/samtools-1.7-compat.h:14:32: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir)
      |                                ^~~~~~~~~~~~~~~~~~~~~~~
idxstats.c:20:12: note: in expansion of macro ‘bam_seek’
   20 |     (void) bam_seek(fp, 0, 0);
      |            ^~~~~~~~
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c io_sam.c -o io_sam.o
In file included from io_sam.c:2:
io_sam.c: In function ‘_scan_bam_all’:
/usr/lib/R/site-library/Rhtslib/include/samtools-1.7-compat.h:14:32: warning: ignoring return value of ‘bgzf_seek’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   14 | #define bam_seek(fp, pos, dir) bgzf_seek(fp, pos, dir)
      |                                ^~~~~~~~~~~~~~~~~~~~~~~
io_sam.c:304:12: note: in expansion of macro ‘bam_seek’
  304 |     (void) bam_seek(bfile->file->x.bam, bfile->pos0, SEEK_SET);
      |            ^~~~~~~~
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c pbuffer_wrapper.cpp -o pbuffer_wrapper.o
g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c pileup.cpp -o pileup.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c pileupbam.c -o pileupbam.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c sam_opts.c -o sam_opts.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c sam_utils.c -o sam_utils.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c samtools_patch.c -o samtools_patch.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c scan_bam_data.c -o scan_bam_data.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c tabixfile.c -o tabixfile.o
tabixfile.c: In function ‘index_tabix’:
tabixfile.c:190:5: warning: ‘bgzf_is_bgzf’ is deprecated: Use bgzf_compression() or hts_detect_format() instead [-Wdeprecated-declarations]
  190 |     if (bgzf_is_bgzf(fn) != 1)
      |     ^~
In file included from tabixfile.c:3:
/usr/lib/R/site-library/Rhtslib/include/htslib/bgzf.h:270:9: note: declared here
  270 |     int bgzf_is_bgzf(const char *fn) HTS_DEPRECATED("Use bgzf_compression() or hts_detect_format() instead");
      |         ^~~~~~~~~~~~
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c tagfilter.c -o tagfilter.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c utilities.c -o utilities.o
gcc -I"/usr/share/R/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I'/usr/lib/R/site-library/Rhtslib/include' -I'/usr/lib/R/site-library/S4Vectors/include' -I'/usr/lib/R/site-library/IRanges/include' -I'/usr/lib/R/site-library/XVector/include' -I'/usr/lib/R/site-library/Biostrings/include'     -fpic  -g -O2 -ffile-prefix-map=/build/r-base-zZwmPk/r-base-4.3.1=. -fstack-protector-strong -Wformat -Werror=format-security -g1 -Wdate-time -D_FORTIFY_SOURCE=2  -c zip_compression.c -o zip_compression.o
g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o Rsamtools.so Biostrings_stubs.o COMPAT_bcf_hdr_read.o IRanges_stubs.o PileupBuffer.o PosCacheColl.o R_init_Rsamtools.o ResultManager.o S4Vectors_stubs.o XVector_stubs.o as_bam.o bam_data.o bam_mate_iter.o bam_plbuf.o bam_sort.o bambuffer.o bamfile.o bcffile.o bedidx.o encode.o fafile.o idxstats.o io_sam.o pbuffer_wrapper.o pileup.o pileupbam.o sam_opts.o sam_utils.o samtools_patch.o scan_bam_data.o tabixfile.o tagfilter.o utilities.o zip_compression.o /usr/lib/R/site-library/Rhtslib/usrlib/libhts.a -lcurl -L/usr/lib/R/lib -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
make[1]: Entering directory '/<<PKGBUILDDIR>>/src'
make[1]: Leaving directory '/<<PKGBUILDDIR>>/src'
installing to /<<PKGBUILDDIR>>/debian/r-bioc-rsamtools/usr/lib/R/site-library/00LOCK-r-bioc-rsamtools-2.14.0/00new/Rsamtools/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (Rsamtools)
	rm -f /<<PKGBUILDDIR>>/debian/r-bioc-rsamtools/usr/lib/R/site-library/Rsamtools/LICENSE
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 300.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 302.
Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 303.
Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 306.
I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.1.3)
I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.31.8)
I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.47.6)
W: Ignoring specified R dependency: R (>= 3.5.0)
I: Using r-bioc-genomicalignments for Suggests:GenomicAlignments
I: Using r-bioc-shortread for Suggests:ShortRead (>= 1.19.10)
I: Using r-bioc-genomicfeatures for Suggests:GenomicFeatures
W: Cannot find a debian package for Suggests:TxDb.Dmelanogaster.UCSC.dm3.ensGene
W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg18.knownGene
W: Cannot find a debian package for Suggests:RNAseqData.HNRNPC.bam.chr14
W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg19
I: Using r-cran-runit for Suggests:RUnit
I: Using r-bioc-biocstyle for Suggests:BiocStyle
I: Using r-bioc-biocgenerics for Imports:BiocGenerics (>= 0.25.1)
I: Using r-bioc-s4vectors for Imports:S4Vectors (>= 0.17.25)
I: Using r-bioc-iranges for Imports:IRanges (>= 2.13.12)
I: Using r-bioc-xvector for Imports:XVector (>= 0.19.7)
I: Using r-bioc-zlibbioc for Imports:zlibbioc
I: Using r-cran-bitops for Imports:bitops
I: Using r-bioc-biocparallel for Imports:BiocParallel
I: Using r-bioc-rhtslib for LinkingTo:Rhtslib (>= 1.99.3)
I: Using r-bioc-s4vectors for LinkingTo:S4Vectors
I: Using r-bioc-iranges for LinkingTo:IRanges
I: Using r-bioc-xvector for LinkingTo:XVector
I: Using r-bioc-biostrings for LinkingTo:Biostrings
I: BioConductor API version: r-api-bioc-3.16
I: Use r-bioc-rsamtools as Debian binary package for variables substitution
   dh_installdocs -a -O--buildsystem=R
   dh_installchangelogs -a -O--buildsystem=R
   dh_installsystemduser -a -O--buildsystem=R
   dh_perl -a -O--buildsystem=R
   dh_link -a -O--buildsystem=R
   dh_strip_nondeterminism -a -O--buildsystem=R
   dh_compress -a -O--buildsystem=R
   dh_fixperms -a -O--buildsystem=R
   dh_missing -a -O--buildsystem=R
   dh_dwz -a -O--buildsystem=R
   dh_strip -a -O--buildsystem=R
   dh_makeshlibs -a -O--buildsystem=R
   dh_shlibdeps -a -O--buildsystem=R
   dh_installdeb -a -O--buildsystem=R
   dh_gencontrol -a -O--buildsystem=R
   dh_md5sums -a -O--buildsystem=R
   dh_builddeb -a -O--buildsystem=R
dpkg-deb: building package 'r-bioc-rsamtools-dbgsym' in '../r-bioc-rsamtools-dbgsym_2.14.0-1+b3_armhf.deb'.
dpkg-deb: building package 'r-bioc-rsamtools' in '../r-bioc-rsamtools_2.14.0-1+b3_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../r-bioc-rsamtools_2.14.0-1+b3_armhf.buildinfo
 dpkg-genchanges --build=any -mRaspbian pi5 test autobuilder <root@raspbian.org> -O../r-bioc-rsamtools_2.14.0-1+b3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2023-10-06T04:43:15Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


r-bioc-rsamtools_2.14.0-1+b3_armhf.changes:
-------------------------------------------

Format: 1.8
Date: Fri, 06 Oct 2023 04:42:21 +0000
Source: r-bioc-rsamtools (2.14.0-1)
Binary: r-bioc-rsamtools r-bioc-rsamtools-dbgsym
Binary-Only: yes
Architecture: armhf
Version: 2.14.0-1+b3
Distribution: trixie-staging
Urgency: low
Maintainer: Raspbian pi5 test autobuilder <root@raspbian.org>
Changed-By: Raspbian pi5 test autobuilder <root@raspbian.org>
Description:
 r-bioc-rsamtools - GNU R binary alignment (BAM), variant call (BCF), or tabix file i
Changes:
 r-bioc-rsamtools (2.14.0-1+b3) trixie-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
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 c8adb594dd2fe9acbfbce0398fb13ee7358fff378b0ee6f046a7c5871a830cdf 10786 r-bioc-rsamtools_2.14.0-1+b3_armhf.buildinfo
 7891957c426fa9f10cfa3e0e8efad0098bf9ac3fadd2169100c19147cf48b65c 3684904 r-bioc-rsamtools_2.14.0-1+b3_armhf.deb
Files:
 3bbeba22e96f65ae85f9760b741438ea 188948 debug optional r-bioc-rsamtools-dbgsym_2.14.0-1+b3_armhf.deb
 7169eac5337725c6f773c7dc481b5e49 10786 gnu-r optional r-bioc-rsamtools_2.14.0-1+b3_armhf.buildinfo
 8a5789179122ce825686324ea15b6536 3684904 gnu-r optional r-bioc-rsamtools_2.14.0-1+b3_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: r-bioc-rsamtools (2.14.0-1)
Binary: r-bioc-rsamtools r-bioc-rsamtools-dbgsym
Architecture: armhf
Version: 2.14.0-1+b3
Binary-Only-Changes:
 r-bioc-rsamtools (2.14.0-1+b3) trixie-staging; urgency=low, binary-only=yes
 .
   * Binary-only non-maintainer upload for armhf; no source changes.
   * rebuild due to debcheck failure
 .
  -- Raspbian pi5 test autobuilder <root@raspbian.org>  Fri, 06 Oct 2023 04:42:21 +0000
Checksums-Md5:
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Checksums-Sha256:
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Build-Origin: Raspbian
Build-Architecture: armhf
Build-Date: Fri, 06 Oct 2023 04:43:15 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.71-3),
 automake (= 1:1.16.5-1.3),
 autopoint (= 0.21-13),
 autotools-dev (= 20220109.1),
 base-files (= 13+rpi1),
 base-passwd (= 3.6.1),
 bash (= 5.2.15-2),
 binutils (= 2.40-2+rpi2),
 binutils-arm-linux-gnueabihf (= 2.40-2+rpi2),
 binutils-common (= 2.40-2+rpi2),
 bsdextrautils (= 2.39.2-2),
 bsdutils (= 1:2.39.2-2),
 build-essential (= 12.9),
 bzip2 (= 1.0.8-5+b2),
 ca-certificates (= 20230311),
 coreutils (= 9.1-1),
 cpp (= 4:12.2.0-3+rpi1),
 cpp-12 (= 12.2.0-14+rpi1),
 dash (= 0.5.12-6),
 dctrl-tools (= 2.24-3),
 debconf (= 1.5.82),
 debhelper (= 13.11.6),
 debianutils (= 5.13),
 dh-autoreconf (= 20),
 dh-r (= 20230912),
 dh-strip-nondeterminism (= 1.13.1-1),
 diffutils (= 1:3.8-4),
 dpkg (= 1.21.22+rpi1),
 dpkg-dev (= 1.21.22+rpi1),
 dwz (= 0.15-1),
 file (= 1:5.45-2),
 findutils (= 4.9.0-5),
 fontconfig (= 2.14.2-6),
 fontconfig-config (= 2.14.2-6),
 fonts-dejavu-core (= 2.37-8),
 fonts-dejavu-mono (= 2.37-8),
 g++ (= 4:12.2.0-3+rpi1),
 g++-12 (= 12.2.0-14+rpi1),
 gcc (= 4:12.2.0-3+rpi1),
 gcc-12 (= 12.2.0-14+rpi1),
 gcc-12-base (= 12.2.0-14+rpi1),
 gettext (= 0.21-13),
 gettext-base (= 0.21-13),
 gfortran (= 4:12.2.0-3+rpi1),
 gfortran-12 (= 12.2.0-14+rpi1),
 grep (= 3.11-3),
 groff-base (= 1.23.0-2),
 gzip (= 1.12-1),
 hostname (= 3.23+nmu1),
 icu-devtools (= 72.1-3),
 init-system-helpers (= 1.65.2),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.1-3),
 libalgorithm-c3-perl (= 0.11-2),
 libarchive-zip-perl (= 1.68-1),
 libasan8 (= 12.2.0-14+rpi1),
 libatomic1 (= 12.2.0-14+rpi1),
 libattr1 (= 1:2.5.1-4),
 libaudit-common (= 1:3.1.1-1),
 libaudit1 (= 1:3.1.1-1),
 libb-hooks-endofscope-perl (= 0.26-1),
 libb-hooks-op-check-perl (= 0.22-2+b1),
 libbinutils (= 2.40-2+rpi2),
 libblas-dev (= 3.11.0-2),
 libblas3 (= 3.11.0-2),
 libblkid1 (= 2.39.2-2),
 libboost1.81-dev (= 1.81.0-6),
 libbrotli1 (= 1.0.9-2+b3),
 libbsd0 (= 0.11.7-4),
 libbz2-1.0 (= 1.0.8-5+b2),
 libbz2-dev (= 1.0.8-5+b2),
 libc-bin (= 2.36-9+rpi1+deb12u1),
 libc-dev-bin (= 2.36-9+rpi1+deb12u1),
 libc6 (= 2.36-9+rpi1+deb12u1),
 libc6-dev (= 2.36-9+rpi1+deb12u1),
 libcairo2 (= 1.18.0-1),
 libcap-ng0 (= 0.8.3-1+b1),
 libcap2 (= 1:2.66-4),
 libcc1-0 (= 12.2.0-14+rpi1),
 libclass-c3-perl (= 0.35-2),
 libclass-load-perl (= 0.25-2),
 libclass-load-xs-perl (= 0.10-2+b1),
 libclone-perl (= 0.46-1),
 libcom-err2 (= 1.47.0-2),
 libcrypt-dev (= 1:4.4.36-2),
 libcrypt1 (= 1:4.4.36-2),
 libctf-nobfd0 (= 2.40-2+rpi2),
 libctf0 (= 2.40-2+rpi2),
 libcurl3-gnutls (= 8.2.1-2+rpi1),
 libcurl4 (= 8.2.1-2+rpi1),
 libcurl4-openssl-dev (= 8.2.1-2+rpi1),
 libdata-optlist-perl (= 0.114-1),
 libdatrie1 (= 0.2.13-2+b2),
 libdb5.3 (= 5.3.28+dfsg2-2),
 libdebconfclient0 (= 0.270),
 libdebhelper-perl (= 13.11.6),
 libdeflate0 (= 1.18-1),
 libdevel-callchecker-perl (= 0.008-2),
 libdevel-globaldestruction-perl (= 0.14-4),
 libdevel-overloadinfo-perl (= 0.007-1),
 libdevel-stacktrace-perl (= 2.0400-2),
 libdist-checkconflicts-perl (= 0.11-2),
 libdpkg-perl (= 1.21.22+rpi1),
 libdynaloader-functions-perl (= 0.003-3),
 libelf1 (= 0.188-2.1+rpi1),
 libencode-locale-perl (= 1.05-3),
 libeval-closure-perl (= 0.14-3),
 libexpat1 (= 2.5.0-2),
 libffi8 (= 3.4.4-1),
 libfile-stripnondeterminism-perl (= 1.13.1-1),
 libfile-which-perl (= 1.27-2),
 libfontconfig1 (= 2.14.2-6),
 libfreetype6 (= 2.13.2+dfsg-1),
 libfribidi0 (= 1.0.13-3),
 libgcc-12-dev (= 12.2.0-14+rpi1),
 libgcc-s1 (= 12.2.0-14+rpi1),
 libgcrypt20 (= 1.10.2-3),
 libgdbm-compat4 (= 1.23-3),
 libgdbm6 (= 1.23-3),
 libgfortran-12-dev (= 12.2.0-14+rpi1),
 libgfortran5 (= 12.2.0-14+rpi1),
 libglib2.0-0 (= 2.78.0-2+rpi1),
 libgmp10 (= 2:6.3.0+dfsg-2),
 libgnutls30 (= 3.8.1-4),
 libgomp1 (= 12.2.0-14+rpi1),
 libgpg-error0 (= 1.47-2),
 libgraphite2-3 (= 1.3.14-1),
 libgssapi-krb5-2 (= 1.20.1-4),
 libharfbuzz0b (= 8.0.1-1),
 libhogweed6 (= 3.9.1-2),
 libhttp-date-perl (= 6.05-2),
 libhttp-message-perl (= 6.44-2),
 libice6 (= 2:1.0.10-1),
 libicu-dev (= 72.1-3),
 libicu72 (= 72.1-3),
 libidn2-0 (= 2.3.4-1),
 libio-html-perl (= 1.004-3),
 libisl23 (= 0.26-3),
 libjansson4 (= 2.14-2),
 libjbig0 (= 2.1-6.1),
 libjpeg-dev (= 1:2.1.5-2),
 libjpeg62-turbo (= 1:2.1.5-2),
 libjpeg62-turbo-dev (= 1:2.1.5-2),
 libk5crypto3 (= 1.20.1-4),
 libkeyutils1 (= 1.6.3-2),
 libkrb5-3 (= 1.20.1-4),
 libkrb5support0 (= 1.20.1-4),
 liblapack-dev (= 3.11.0-2),
 liblapack3 (= 3.11.0-2),
 libldap-2.5-0 (= 2.5.13+dfsg-5+rpi1),
 liblerc4 (= 4.0.0+ds-3),
 liblwp-mediatypes-perl (= 6.04-2),
 liblz4-1 (= 1.9.4-1+rpi1+b1),
 liblzma-dev (= 5.4.4-0.1),
 liblzma5 (= 5.4.4-0.1),
 libmagic-mgc (= 1:5.45-2),
 libmagic1 (= 1:5.45-2),
 libmd0 (= 1.1.0-1),
 libmodule-implementation-perl (= 0.09-2),
 libmodule-runtime-conflicts-perl (= 0.003-2),
 libmodule-runtime-perl (= 0.016-2),
 libmoose-perl (= 2.2206-1),
 libmount1 (= 2.39.2-2),
 libmpc3 (= 1.3.1-1),
 libmpfr6 (= 4.2.0-1),
 libmro-compat-perl (= 0.15-2),
 libnamespace-clean-perl (= 0.27-2),
 libncurses-dev (= 6.4+20230625-2),
 libncurses6 (= 6.4+20230625-2),
 libncursesw6 (= 6.4+20230625-2),
 libnettle8 (= 3.9.1-2),
 libnghttp2-14 (= 1.56.0-1),
 libnsl-dev (= 1.3.0-2),
 libnsl2 (= 1.3.0-2),
 libp11-kit0 (= 0.25.0-4),
 libpackage-deprecationmanager-perl (= 0.18-1),
 libpackage-stash-perl (= 0.40-1),
 libpackage-stash-xs-perl (= 0.30-1+b1),
 libpam-modules (= 1.5.2-7),
 libpam-modules-bin (= 1.5.2-7),
 libpam-runtime (= 1.5.2-7),
 libpam0g (= 1.5.2-7),
 libpango-1.0-0 (= 1.51.0+ds-2),
 libpangocairo-1.0-0 (= 1.51.0+ds-2),
 libpangoft2-1.0-0 (= 1.51.0+ds-2),
 libpaper-utils (= 1.1.29),
 libpaper1 (= 1.1.29),
 libparams-classify-perl (= 0.015-2+b1),
 libparams-util-perl (= 1.102-2+b1),
 libpcre2-16-0 (= 10.42-4),
 libpcre2-32-0 (= 10.42-4),
 libpcre2-8-0 (= 10.42-4),
 libpcre2-dev (= 10.42-4),
 libpcre2-posix3 (= 10.42-4),
 libperl5.36 (= 5.36.0-9),
 libpipeline1 (= 1.5.7-1),
 libpixman-1-0 (= 0.42.2-1),
 libpkgconf3 (= 1.8.1-1),
 libpng-dev (= 1.6.40-1),
 libpng16-16 (= 1.6.40-1),
 libpsl5 (= 0.21.2-1+b1),
 libreadline-dev (= 8.2-1.3),
 libreadline8 (= 8.2-1.3),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2),
 libsasl2-2 (= 2.1.28+dfsg1-3),
 libsasl2-modules-db (= 2.1.28+dfsg1-3),
 libseccomp2 (= 2.5.4-1+rpi1+b1),
 libselinux1 (= 3.5-1),
 libsharpyuv0 (= 1.3.2-0.3),
 libsm6 (= 2:1.2.3-1),
 libsmartcols1 (= 2.39.2-2),
 libssh2-1 (= 1.11.0-2),
 libssl3 (= 3.0.11-1),
 libstdc++-12-dev (= 12.2.0-14+rpi1),
 libstdc++6 (= 12.2.0-14+rpi1),
 libsub-exporter-perl (= 0.990-1),
 libsub-exporter-progressive-perl (= 0.001013-3),
 libsub-identify-perl (= 0.14-3),
 libsub-install-perl (= 0.929-1),
 libsub-name-perl (= 0.27-1),
 libsub-override-perl (= 0.09-4),
 libswitch-perl (= 2.17-3),
 libsystemd0 (= 252.12-1~deb12u1+rpi1),
 libtasn1-6 (= 4.19.0-3),
 libtcl8.6 (= 8.6.13+dfsg-2),
 libthai-data (= 0.1.29-1),
 libthai0 (= 0.1.29-1),
 libtiff6 (= 4.5.1+git230720-1),
 libtimedate-perl (= 2.3300-2),
 libtinfo6 (= 6.4+20230625-2),
 libtirpc-common (= 1.3.3+ds-1),
 libtirpc-dev (= 1.3.3+ds-1),
 libtirpc3 (= 1.3.3+ds-1),
 libtk8.6 (= 8.6.13-2),
 libtool (= 2.4.7-7),
 libtry-tiny-perl (= 0.31-2),
 libubsan1 (= 12.2.0-14+rpi1),
 libuchardet0 (= 0.0.7-1),
 libudev1 (= 252.12-1~deb12u1+rpi1),
 libunistring5 (= 1.1-2),
 liburi-perl (= 5.21-1),
 libuuid1 (= 2.39.2-2),
 libvariable-magic-perl (= 0.63-1+b1),
 libwebp7 (= 1.3.2-0.3),
 libwww-curl-perl (= 4.17-10),
 libwww-curl-simple-perl (= 0.100191-3),
 libx11-6 (= 2:1.8.6-1),
 libx11-data (= 2:1.8.6-1),
 libxau6 (= 1:1.0.9-1),
 libxcb-render0 (= 1.15-1),
 libxcb-shm0 (= 1.15-1),
 libxcb1 (= 1.15-1),
 libxdmcp6 (= 1:1.1.2-3),
 libxext6 (= 2:1.3.4-1),
 libxft2 (= 2.3.6-1),
 libxml2 (= 2.9.14+dfsg-1.3),
 libxmuu1 (= 2:1.1.3-3),
 libxrender1 (= 1:0.9.10-1.1),
 libxss1 (= 1:1.2.3-1),
 libxt6 (= 1:1.2.1-1.1),
 libzstd1 (= 1.5.5+dfsg2-1),
 linux-libc-dev (= 6.1.38-1+rpi1),
 login (= 1:4.13+dfsg1-1),
 lsb-base (= 11.6+rpi1),
 m4 (= 1.4.19-4),
 make (= 4.3-4.1),
 man-db (= 2.11.2-3),
 mawk (= 1.3.4.20230808-1),
 ncurses-base (= 6.4+20230625-2),
 ncurses-bin (= 6.4+20230625-2),
 openssl (= 3.0.11-1),
 patch (= 2.7.6-7),
 perl (= 5.36.0-9),
 perl-base (= 5.36.0-9),
 perl-modules-5.36 (= 5.36.0-9),
 pkg-config (= 1.8.1-1),
 pkgconf (= 1.8.1-1),
 pkgconf-bin (= 1.8.1-1),
 po-debconf (= 1.0.21+nmu1),
 r-base-core (= 4.3.1-4),
 r-base-dev (= 4.3.1-4),
 r-bioc-biocgenerics (= 0.46.0-1),
 r-bioc-biocparallel (= 1.34.2-1),
 r-bioc-biostrings (= 2.68.1-1),
 r-bioc-genomeinfodb (= 1.36.3+dfsg-1),
 r-bioc-genomeinfodbdata (= 1.2.10-1),
 r-bioc-genomicranges (= 1.52.0+dfsg-1),
 r-bioc-iranges (= 2.34.1-1),
 r-bioc-rhtslib (= 2.2.0+dfsg-1),
 r-bioc-s4vectors (= 0.38.2+dfsg-1),
 r-bioc-xvector (= 0.40.0-1),
 r-bioc-zlibbioc (= 1.46.0+dfsg-1),
 r-cran-bh (= 1.81.0-1),
 r-cran-bitops (= 1.0-7-1),
 r-cran-codetools (= 0.2-19-1),
 r-cran-cpp11 (= 0.4.6-1),
 r-cran-crayon (= 1.5.2-1),
 r-cran-formatr (= 1.14-1),
 r-cran-futile.logger (= 1.4.3-4),
 r-cran-futile.options (= 1.0.1-3),
 r-cran-lambda.r (= 1.2.4-2),
 r-cran-rcurl (= 1.98-1.12+dfsg-1),
 r-cran-snow (= 1:0.4.4-2),
 readline-common (= 8.2-1.3),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-1),
 sensible-utils (= 0.0.20),
 sysvinit-utils (= 3.08-1),
 tar (= 1.34+dfsg-1.2),
 tzdata (= 2023c-10),
 ucf (= 3.0043+nmu1),
 unzip (= 6.0-28),
 usr-is-merged (= 37),
 util-linux (= 2.39.2-2),
 x11-common (= 1:7.7+23),
 xauth (= 1:1.1.2-1),
 xdg-utils (= 1.1.3-4.1),
 xz-utils (= 5.4.4-0.1),
 zip (= 3.0-13),
 zlib1g (= 1:1.2.13.dfsg-3),
 zlib1g-dev (= 1:1.2.13.dfsg-3)
Environment:
 DEB_BUILD_OPTIONS="parallel=4"
 LANG="en_GB.UTF-8"
 LC_ALL="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 SOURCE_DATE_EPOCH="1696567341"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


r-bioc-rsamtools-dbgsym_2.14.0-1+b3_armhf.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 188948 bytes: control archive=544 bytes.
     419 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: r-bioc-rsamtools-dbgsym
 Source: r-bioc-rsamtools (2.14.0-1)
 Version: 2.14.0-1+b3
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 292
 Depends: r-bioc-rsamtools (= 2.14.0-1+b3)
 Section: debug
 Priority: optional
 Description: debug symbols for r-bioc-rsamtools
 Build-Ids: 6b43b552bfe12c6dc1e85a4f135683ea8fc14b4f

drwxr-xr-x root/root         0 2023-10-06 04:42 ./
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/lib/
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/lib/debug/
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/lib/debug/.build-id/6b/
-rw-r--r-- root/root    288584 2023-10-06 04:42 ./usr/lib/debug/.build-id/6b/43b552bfe12c6dc1e85a4f135683ea8fc14b4f.debug
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/share/
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/share/doc/
lrwxrwxrwx root/root         0 2023-10-06 04:42 ./usr/share/doc/r-bioc-rsamtools-dbgsym -> r-bioc-rsamtools


r-bioc-rsamtools_2.14.0-1+b3_armhf.deb
--------------------------------------

 new Debian package, version 2.0.
 size 3684904 bytes: control archive=3836 bytes.
    1131 bytes,    16 lines      control              
    9969 bytes,   109 lines      md5sums              
 Package: r-bioc-rsamtools
 Source: r-bioc-rsamtools (2.14.0-1)
 Version: 2.14.0-1+b3
 Architecture: armhf
 Maintainer: Debian R Packages Maintainers <r-pkg-team@alioth-lists.debian.net>
 Installed-Size: 5607
 Depends: r-api-4.0, r-api-bioc-3.16, r-bioc-genomeinfodb (>= 1.1.3), r-bioc-genomicranges (>= 1.31.8), r-bioc-biostrings (>= 2.47.6), r-bioc-biocgenerics (>= 0.25.1), r-bioc-s4vectors (>= 0.17.25), r-bioc-iranges (>= 2.13.12), r-bioc-xvector (>= 0.19.7), r-bioc-zlibbioc, r-cran-bitops, r-bioc-biocparallel, r-bioc-rhtslib (>= 1.99.3), libc6 (>= 2.34), libcurl4 (>= 7.18.0), libgcc-s1 (>= 3.5), libstdc++6 (>= 11)
 Suggests: r-bioc-genomicalignments, r-bioc-shortread (>= 1.19.10), r-bioc-genomicfeatures, r-cran-runit, r-bioc-biocstyle
 Section: gnu-r
 Priority: optional
 Homepage: https://bioconductor.org/packages/Rsamtools/
 Description: GNU R binary alignment (BAM), variant call (BCF), or tabix file import
  This package provides an interface to the 'samtools', 'bcftools', and
  'tabix' utilities for manipulating SAM (Sequence Alignment / Map),
  binary variant call (BCF) and compressed indexed tab-delimited (tabix)
  files.

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-rw-r--r-- root/root      2303 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/INDEX
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-rw-r--r-- root/root      2466 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/Meta/links.rds
-rw-r--r-- root/root       790 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/Meta/nsInfo.rds
-rw-r--r-- root/root      1757 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/Meta/package.rds
-rw-r--r-- root/root       247 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/Meta/vignette.rds
-rw-r--r-- root/root      1431 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/NAMESPACE
-rw-r--r-- root/root     15994 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/NEWS
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/R/
-rw-r--r-- root/root      1058 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/R/Rsamtools
-rw-r--r-- root/root    857836 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdb
-rw-r--r-- root/root      6746 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/R/Rsamtools.rdx
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-rw-r--r-- root/root     10341 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.R
-rw-r--r-- root/root     20661 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.Rnw
-rw-r--r-- root/root    185080 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/doc/Rsamtools-Overview.pdf
-rw-r--r-- root/root      1459 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/doc/index.html
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/
-rw-r--r-- root/root       176 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa
-rw-r--r-- root/root       112 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/ce2dict1.fa.fai
-rw-r--r-- root/root    126539 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/ex1.bam
-rw-r--r-- root/root       176 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/ex1.bam.bai
-rw-r--r-- root/root     79176 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf.gz
-rw-r--r-- root/root       110 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/ex1.bcf.gz.csi
-rw-r--r-- root/root    559422 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/ex1.sam
-rw-r--r-- root/root     74987 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/ex1.vcf.gz
-rw-r--r-- root/root       143 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/ex1.vcf.gz.csi
-rw-r--r-- root/root      3778 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz
-rw-r--r-- root/root       259 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/example.gtf.gz.tbi
-rw-r--r-- root/root       348 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam
-rw-r--r-- root/root        96 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.bam.bai
-rw-r--r-- root/root       368 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/example_from_SAM_Spec.sam
-rw-r--r-- root/root       203 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.bam
-rw-r--r-- root/root       176 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.bam.bai
-rw-r--r-- root/root       240 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/no_which_buffered_pileup.sam
-rw-r--r-- root/root       198 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.bam
-rw-r--r-- root/root       176 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.bam.bai
-rw-r--r-- root/root       168 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/no_which_whole_file.sam
-rw-r--r-- root/root   1626553 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/olaps.Rda
-rw-r--r-- root/root    138598 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/pileup.txt
-rw-r--r-- root/root       181 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/querybins.bam
-rw-r--r-- root/root        96 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/querybins.bam.bai
-rw-r--r-- root/root       117 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/querybins.sam
-rw-r--r-- root/root       381 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/revbins.bam
-rw-r--r-- root/root       416 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/revbins.bam.bai
-rw-r--r-- root/root       770 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/revbins.sam
-rw-r--r-- root/root        31 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/samtools-github.txt
-rw-r--r-- root/root      2808 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/slxMaq09_urls.txt
-rw-r--r-- root/root       333 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/tagfilter.bam
-rw-r--r-- root/root       656 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/tagfilter.bam.bai
-rw-r--r-- root/root       804 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/tagfilter.sam
-rw-r--r-- root/root      1167 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/tiny.bam
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-rw-r--r-- root/root      4102 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/tiny.sam
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/tophat/
-rw-r--r-- root/root        36 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/tophat/README
-rw-r--r-- root/root     36039 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/tophat/accepted_hits.sam
-rw-r--r-- root/root      4381 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/tophat/coverage.wig
-rw-r--r-- root/root       196 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/extdata/tophat/junctions.bed
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-rw-r--r-- root/root     11579 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/help/AnIndex
-rw-r--r-- root/root    176090 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdb
-rw-r--r-- root/root       778 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/help/Rsamtools.rdx
-rw-r--r-- root/root      2516 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/help/aliases.rds
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-rw-r--r-- root/root      1844 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/html/R.css
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-rw-r--r-- root/root   1024688 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/libs/Rsamtools.so
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/scripts/
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-rw-r--r-- root/root      1000 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/scripts/features.R
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-rw-r--r-- root/root      1175 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/unitTests/test_readPileup.R
-rw-r--r-- root/root       343 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/unitTests/test_scanBamFlag.R
-rw-r--r-- root/root       710 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/unitTests/test_sortBam_test.R
-rw-r--r-- root/root      3569 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/unitTests/test_tagfilter.R
-rw-r--r-- root/root       183 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/unitTests/test_testPairedEndBam.R
-rw-r--r-- root/root       645 2023-10-06 04:42 ./usr/lib/R/site-library/Rsamtools/unitTests/test_utilities.R
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/share/
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/share/doc/
drwxr-xr-x root/root         0 2023-10-06 04:42 ./usr/share/doc/r-bioc-rsamtools/
-rw-r--r-- root/root       222 2023-10-06 04:42 ./usr/share/doc/r-bioc-rsamtools/changelog.Debian.armhf.gz
-rw-r--r-- root/root       943 2023-10-06 04:42 ./usr/share/doc/r-bioc-rsamtools/changelog.Debian.gz
-rw-r--r-- root/root      5340 2022-11-21 10:21 ./usr/share/doc/r-bioc-rsamtools/copyright


+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: armhf
Build Type: any
Build-Space: 14564
Build-Time: 54
Distribution: trixie-staging
Host Architecture: armhf
Install-Time: 113
Job: r-bioc-rsamtools_2.14.0-1
Machine Architecture: arm64
Package: r-bioc-rsamtools
Package-Time: 177
Source-Version: 2.14.0-1
Space: 14564
Status: successful
Version: 2.14.0-1+b3
--------------------------------------------------------------------------------
Finished at 2023-10-06T04:43:15Z
Build needed 00:02:57, 14564k disk space

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